Your job contains 1 sequence.
>psy18119
MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK
SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID
IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG
PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA
RGLGRKFQLGQLTGKKKEEESKS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy18119
(263 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q9NPD3 - symbol:EXOSC4 "Exosome complex compone... 715 1.3e-70 1
UNIPROTKB|F1RSL0 - symbol:EXOSC4 "Uncharacterized protein... 714 1.6e-70 1
RGD|1310986 - symbol:Exosc4 "exosome component 4" species... 714 1.6e-70 1
FB|FBgn0032487 - symbol:Ski6 "Ski6" species:7227 "Drosoph... 712 2.6e-70 1
UNIPROTKB|Q7YRA3 - symbol:EXOSC4 "Exosome complex compone... 712 2.6e-70 1
UNIPROTKB|E2RIM3 - symbol:EXOSC4 "Uncharacterized protein... 710 4.3e-70 1
MGI|MGI:1923576 - symbol:Exosc4 "exosome component 4" spe... 708 7.0e-70 1
ZFIN|ZDB-GENE-040426-1702 - symbol:exosc4 "exosome compon... 706 1.1e-69 1
TAIR|locus:2076710 - symbol:RRP41 "AT3G61620" species:370... 538 7.2e-52 1
WB|WBGene00007201 - symbol:exos-4.1 species:6239 "Caenorh... 501 6.0e-48 1
UNIPROTKB|Q17533 - symbol:exos-4.1 "Putative exosome comp... 501 6.0e-48 1
POMBASE|SPAC3G9.10c - symbol:rrp41 "exosomal 3'-to-5' pho... 417 4.8e-39 1
CGD|CAL0002905 - symbol:orf19.4582 species:5476 "Candida ... 411 2.1e-38 1
SGD|S000003427 - symbol:SKI6 "Exosome non-catalytic core ... 351 4.7e-32 1
ASPGD|ASPL0000013004 - symbol:AN3812 species:162425 "Emer... 271 1.6e-30 2
UNIPROTKB|G4MM07 - symbol:MGG_06785 "Exosome complex exon... 331 6.2e-30 1
GENEDB_PFALCIPARUM|PF14_0256 - symbol:PF14_0256 "exosome ... 285 4.6e-25 1
UNIPROTKB|Q8ILI7 - symbol:PF14_0256 "Exosome complex exon... 285 4.6e-25 1
ZFIN|ZDB-GENE-050522-362 - symbol:exosc6 "exosome compone... 281 1.2e-24 1
UNIPROTKB|Q95Z13 - symbol:RRP41A "Rrp41p homologue" speci... 280 1.6e-24 1
UNIPROTKB|Q5RKV6 - symbol:EXOSC6 "Exosome complex compone... 276 4.2e-24 1
RGD|1309832 - symbol:Exosc6 "exosome component 6" species... 275 5.3e-24 1
MGI|MGI:1919794 - symbol:Exosc6 "exosome component 6" spe... 263 1.0e-22 1
TAIR|locus:2124024 - symbol:RRP41L "AT4G27490" species:37... 248 3.9e-21 1
UNIPROTKB|Q28F19 - symbol:exosc6 "Exosome complex compone... 235 9.2e-20 1
UNIPROTKB|F1S435 - symbol:EXOSC6 "Uncharacterized protein... 219 4.6e-18 1
TAIR|locus:2075351 - symbol:AT3G46210 "AT3G46210" species... 209 5.3e-17 1
UNIPROTKB|Q9NQT4 - symbol:EXOSC5 "Exosome complex compone... 204 1.8e-16 1
UNIPROTKB|E1BAG2 - symbol:EXOSC5 "Uncharacterized protein... 201 3.7e-16 1
MGI|MGI:107889 - symbol:Exosc5 "exosome component 5" spec... 198 7.7e-16 1
ZFIN|ZDB-GENE-060503-675 - symbol:exosc5 "exosome compone... 198 7.7e-16 1
RGD|1307861 - symbol:Exosc5 "exosome component 5" species... 197 9.8e-16 1
POMBASE|SPBC211.08c - symbol:SPBC211.08c "exosomal 3'-5' ... 184 6.4e-14 1
UNIPROTKB|Q9KVD6 - symbol:rph "Ribonuclease PH" species:2... 175 2.1e-13 1
TIGR_CMR|VC_0210 - symbol:VC_0210 "ribonuclease PH" speci... 175 2.1e-13 1
UNIPROTKB|Q84T68 - symbol:RRP46 "Exosome complex exonucle... 171 3.1e-12 1
TIGR_CMR|CHY_1758 - symbol:CHY_1758 "polyribonucleotide n... 182 8.9e-12 1
TIGR_CMR|BA_3944 - symbol:BA_3944 "polyribonucleotide nuc... 180 1.7e-11 1
UNIPROTKB|Q95Z09 - symbol:RRP41B "Rrp41p homologue" speci... 170 1.7e-11 1
FB|FBgn0037815 - symbol:Rrp46 "Rrp46" species:7227 "Droso... 165 2.5e-11 1
FB|FBgn0036916 - symbol:Mtr3 "Mtr3" species:7227 "Drosoph... 171 4.9e-11 1
TIGR_CMR|GSU_1795 - symbol:GSU_1795 "ribonuclease PH" spe... 163 8.4e-11 1
GENEDB_PFALCIPARUM|PFB0415c - symbol:PFB0415c "hypothetic... 166 1.0e-10 1
UNIPROTKB|O96177 - symbol:PFB0415c "3' exoribonuclease, p... 166 1.0e-10 1
UNIPROTKB|Q8IEW0 - symbol:EAP4 "Exosome-associated protei... 153 1.4e-09 1
UNIPROTKB|P50849 - symbol:pnp "Polyribonucleotide nucleot... 163 2.4e-09 1
TIGR_CMR|CPS_0112 - symbol:CPS_0112 "ribonuclease PH" spe... 150 5.5e-09 1
UNIPROTKB|P0CG19 - symbol:rph "RNase PH monomer" species:... 149 5.7e-09 1
UNIPROTKB|Q10628 - symbol:rph "Ribonuclease PH" species:1... 151 6.9e-09 1
TIGR_CMR|CHY_0314 - symbol:CHY_0314 "ribonuclease PH" spe... 150 8.3e-09 1
UNIPROTKB|P28619 - symbol:rph "Ribonuclease PH" species:2... 147 1.7e-08 1
POMBASE|SPBC115.01c - symbol:rrp46 "exosome subunit Rrp46... 145 1.8e-08 1
UNIPROTKB|Q2GJV5 - symbol:pnp "Polyribonucleotide nucleot... 156 2.1e-08 1
TIGR_CMR|APH_0767 - symbol:APH_0767 "polyribonucleotide n... 156 2.1e-08 1
TIGR_CMR|NSE_0057 - symbol:NSE_0057 "polyribonucleotide n... 155 2.4e-08 1
TIGR_CMR|BA_4715 - symbol:BA_4715 "ribonuclease PH" speci... 142 7.2e-08 1
TIGR_CMR|CBU_0299 - symbol:CBU_0299 "ribonuclease PH" spe... 141 8.1e-08 1
TIGR_CMR|SO_4256 - symbol:SO_4256 "ribonuclease PH" speci... 141 8.1e-08 1
TIGR_CMR|SPO_0008 - symbol:SPO_0008 "ribonuclease PH" spe... 141 8.1e-08 1
TAIR|locus:2222662 - symbol:AT5G14580 "AT5G14580" species... 151 1.0e-07 1
TIGR_CMR|DET_0970 - symbol:DET_0970 "polyribonucleotide n... 148 1.5e-07 1
TIGR_CMR|SO_1209 - symbol:SO_1209 "polyribonucleotide nuc... 144 4.1e-07 1
TIGR_CMR|DET_1289 - symbol:DET_1289 "ribonuclease PH" spe... 134 6.4e-07 1
TIGR_CMR|SPO_3389 - symbol:SPO_3389 "polyribonucleotide n... 142 7.2e-07 1
TIGR_CMR|ECH_0726 - symbol:ECH_0726 "polyribonucleotide n... 142 8.4e-07 1
UNIPROTKB|G4MSP2 - symbol:MGG_07084 "3' exoribonuclease" ... 120 1.5e-06 2
UNIPROTKB|P05055 - symbol:pnp "polynucleotide phosphoryla... 139 1.6e-06 1
WB|WBGene00000798 - symbol:crn-5 species:6239 "Caenorhabd... 129 1.6e-06 1
UNIPROTKB|Q9KU76 - symbol:pnp "Polyribonucleotide nucleot... 137 2.7e-06 1
TIGR_CMR|VC_0647 - symbol:VC_0647 "polyribonucleotide nuc... 137 2.7e-06 1
TAIR|locus:2079429 - symbol:RIF10 "AT3G03710" species:370... 138 2.9e-06 1
TIGR_CMR|GSU_1593 - symbol:GSU_1593 "polyribonucleotide n... 135 4.5e-06 1
TIGR_CMR|CPS_2207 - symbol:CPS_2207 "polyribonucleotide n... 134 5.9e-06 1
FB|FBgn0039846 - symbol:CG11337 species:7227 "Drosophila ... 134 6.7e-06 1
UNIPROTKB|Q3IJ73 - symbol:pnp "Polyribonucleotide nucleot... 132 1.0e-05 1
TIGR_CMR|CBU_0852 - symbol:CBU_0852 "polyribonucleotide n... 129 2.2e-05 1
SGD|S000003327 - symbol:RRP46 "Exosome non-catalytic core... 116 7.7e-05 1
UNIPROTKB|F1NU18 - symbol:PNPT1 "Uncharacterized protein"... 124 8.2e-05 1
UNIPROTKB|O33325 - symbol:pnp "Polyribonucleotide nucleot... 122 0.00015 1
TIGR_CMR|CJE_1390 - symbol:CJE_1390 "polyribonucleotide n... 120 0.00024 1
RGD|1307987 - symbol:Pnpt1 "polyribonucleotide nucleotidy... 117 0.00027 1
MGI|MGI:1918951 - symbol:Pnpt1 "polyribonucleotide nucleo... 119 0.00034 1
CGD|CAL0003194 - symbol:orf19.168 species:5476 "Candida a... 80 0.00039 2
UNIPROTKB|Q0BWM9 - symbol:pnp "Polyribonucleotide nucleot... 117 0.00051 1
UNIPROTKB|G3V6G7 - symbol:Pnpt1 "Polyribonucleotide nucle... 117 0.00057 1
ASPGD|ASPL0000041827 - symbol:AN2153 species:162425 "Emer... 92 0.00080 3
>UNIPROTKB|Q9NPD3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9606 "Homo sapiens" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0006364 "rRNA
processing" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IMP] [GO:0045006
"DNA deamination" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0051607
"defense response to virus" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0030307 GO:GO:0005730
GO:GO:0051607 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460
GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006
CTD:54512 eggNOG:COG0689 HOGENOM:HOG000229515 HOVERGEN:HBG051519
OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:AF281133 EMBL:AK000598 EMBL:AC109322
EMBL:BC002777 IPI:IPI00745613 RefSeq:NP_061910.1 UniGene:Hs.632041
ProteinModelPortal:Q9NPD3 SMR:Q9NPD3 IntAct:Q9NPD3 STRING:Q9NPD3
PhosphoSite:Q9NPD3 DMDM:14285756 SWISS-2DPAGE:Q9NPD3 PaxDb:Q9NPD3
PRIDE:Q9NPD3 DNASU:54512 Ensembl:ENST00000316052
Ensembl:ENST00000568113 GeneID:54512 KEGG:hsa:54512 UCSC:uc003zau.3
GeneCards:GC08P145133 HGNC:HGNC:18189 HPA:HPA024792 MIM:606491
neXtProt:NX_Q9NPD3 PharmGKB:PA134867931 InParanoid:Q9NPD3
PhylomeDB:Q9NPD3 EvolutionaryTrace:Q9NPD3 GenomeRNAi:54512
NextBio:56896 ArrayExpress:Q9NPD3 Bgee:Q9NPD3 CleanEx:HS_EXOSC4
Genevestigator:Q9NPD3 GermOnline:ENSG00000178896 Uniprot:Q9NPD3
Length = 245
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 135/235 (57%), Positives = 176/235 (74%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 61 SIK-VHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL RVL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHV 236
>UNIPROTKB|F1RSL0 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0045006 "DNA
deamination" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0030307 "positive regulation of cell
growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:FP085471 RefSeq:XP_003125499.1
UniGene:Ssc.8432 Ensembl:ENSSSCT00000006505 GeneID:100511875
KEGG:ssc:100511875 Uniprot:F1RSL0
Length = 245
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 135/235 (57%), Positives = 178/235 (75%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQA AAI++++HPRSQI
Sbjct: 62 RSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVN ATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGIYAACVNVATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTVLDRVVRQHV 236
>RGD|1310986 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA;ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=IEA;ISO] [GO:0030307 "positive regulation of cell growth"
evidence=IEA;ISO] [GO:0035327 "transcriptionally active chromatin"
evidence=IEA;ISO] [GO:0045006 "DNA deamination" evidence=IEA;ISO]
[GO:0051607 "defense response to virus" evidence=IEA;ISO]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA;ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=IEA;ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1310986
GO:GO:0005634 GO:GO:0030307 GO:GO:0051607 GO:GO:0017091
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512
GeneTree:ENSGT00550000074804 OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 IPI:IPI00366418 RefSeq:NP_001128332.1
UniGene:Rn.28481 PRIDE:D4A4Y0 Ensembl:ENSRNOT00000016464
GeneID:300045 KEGG:rno:300045 UCSC:RGD:1310986 NextBio:646189
Uniprot:D4A4Y0
Length = 245
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 135/235 (57%), Positives = 178/235 (75%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQHV 236
>FB|FBgn0032487 [details] [associations]
symbol:Ski6 "Ski6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005652 "nuclear lamina"
evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0005652 GO:GO:0000176 eggNOG:COG0689
SUPFAM:SSF55666 EMBL:AY071632 ProteinModelPortal:Q8SYC8 SMR:Q8SYC8
IntAct:Q8SYC8 STRING:Q8SYC8 PaxDb:Q8SYC8 PRIDE:Q8SYC8
FlyBase:FBgn0032487 InParanoid:Q8SYC8 OrthoDB:EOG4Z08NJ
ArrayExpress:Q8SYC8 Bgee:Q8SYC8 Uniprot:Q8SYC8
Length = 246
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 144/240 (60%), Positives = 181/240 (75%)
Query: 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS 61
DLL+E G LR DGRR HELR+I+C+LGVF Q DGSAY+EQGNTKVLAAVYGP +
Sbjct: 6 DLLSEQG--LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQ 63
Query: 62 IKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
+ SV IN QYS A FST ERK RPRGDRK+ E L L+QA+SAAI SE++PRSQIDI
Sbjct: 64 TE---SV-INCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDI 119
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETLGG 180
+VEVLQ DG N+ +NAATLALIDAGI + E++VAC+ASL+ + PL DIS EE GG
Sbjct: 120 YVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGG 179
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240
P LTVAALP + K+A +E+S++ H+DHL V++ A+ GC +I IL+ A+K+HL+ + A
Sbjct: 180 PKLTVAALPTAEKIAFLEMSERFHIDHLGTVIETAMAGCREIRDILEAAVKEHLLHMGSA 239
>UNIPROTKB|Q7YRA3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0071044 "histone mRNA catabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0051607
GO:GO:0017091 GO:GO:0004527 GO:GO:0090305 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 EMBL:AJ518955 EMBL:BC109819
IPI:IPI00697313 RefSeq:NP_001071554.1 UniGene:Bt.16597 HSSP:Q9UXC2
ProteinModelPortal:Q7YRA3 SMR:Q7YRA3 STRING:Q7YRA3
Ensembl:ENSBTAT00000019451 GeneID:618292 KEGG:bta:618292 CTD:54512
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 InParanoid:Q7YRA3 OMA:DVFIEVL OrthoDB:EOG4PC9T0
NextBio:20901104 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
Uniprot:Q7YRA3
Length = 245
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 134/235 (57%), Positives = 176/235 (74%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 61 SIK-VHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHV 236
>UNIPROTKB|E2RIM3 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045006
"DNA deamination" evidence=IEA] [GO:0035327 "transcriptionally
active chromatin" evidence=IEA] [GO:0030307 "positive regulation of
cell growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
CTD:54512 GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:AAEX03008955 RefSeq:XP_539207.1
Ensembl:ENSCAFT00000002371 GeneID:482086 KEGG:cfa:482086
NextBio:20856762 Uniprot:E2RIM3
Length = 245
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 133/235 (56%), Positives = 176/235 (74%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 61 SIK-VHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+ + L+N QYS A FSTGERK RP GDRK+ E+ L LRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA +T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDNTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTVLDRVVRQHV 236
>MGI|MGI:1923576 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:0071028 "nuclear mRNA
surveillance" evidence=ISO] [GO:0071044 "histone mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
MGI:MGI:1923576 Pfam:PF01138 GO:GO:0005737 GO:GO:0030307
GO:GO:0005730 GO:GO:0051607 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC012277 IPI:IPI00310857
RefSeq:NP_780608.1 UniGene:Mm.322752 ProteinModelPortal:Q921I9
SMR:Q921I9 STRING:Q921I9 PhosphoSite:Q921I9 PaxDb:Q921I9
PRIDE:Q921I9 Ensembl:ENSMUST00000059045 GeneID:109075
KEGG:mmu:109075 InParanoid:Q921I9 ChiTaRS:EXOSC4 NextBio:361620
Bgee:Q921I9 CleanEx:MM_EXOSC4 Genevestigator:Q921I9
GermOnline:ENSMUSG00000034259 Uniprot:Q921I9
Length = 245
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 135/243 (55%), Positives = 181/243 (74%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
GP L +A LP SG++A++E+ +LH DHL +VL+ A + +H +LD ++QH+ + +
Sbjct: 182 GPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQEASV 241
Query: 240 ARG 242
+ G
Sbjct: 242 SLG 244
>ZFIN|ZDB-GENE-040426-1702 [details] [associations]
symbol:exosc4 "exosome component 4" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-040426-1702 GO:GO:0004527 InterPro:IPR020568
SUPFAM:SSF54211 KO:K11600 CTD:54512 HOGENOM:HOG000229515
HOVERGEN:HBG051519 Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC059525
EMBL:BC153617 EMBL:AY576990 IPI:IPI00485513 RefSeq:NP_957033.1
UniGene:Dr.107456 SMR:Q6PBZ8 DNASU:393712 GeneID:393712
KEGG:dre:393712 InParanoid:Q6PBZ8 NextBio:20814714 Uniprot:Q6PBZ8
Length = 245
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 131/239 (54%), Positives = 181/239 (75%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGR+ ELRK++ R+ VF+Q+DGSAY+EQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S +H +IN QYSMA FST ERK RP GDRK+SE+SL L+Q AA+++E++PRSQI
Sbjct: 62 RSKSLHDRAIINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V++LQADGGN+ ACVNAATLAL+DAGIPMR+YV ACSA DTPL D+ H EE+ G
Sbjct: 122 DIYVKILQADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVEDTPLADLCHAEESGG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
G L +A LP SG +A++++ +LH DHL +++ A+ C + +LD+ ++QHL +V+
Sbjct: 182 GTALALALLPRSGNIALLQMDARLHQDHLDTLMEAAMTACKEFSKVLDSVVRQHLEEVS 240
>TAIR|locus:2076710 [details] [associations]
symbol:RRP41 "AT3G61620" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0004527 EMBL:AL132959
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
HOGENOM:HOG000229515 OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666
HSSP:P50597 EMBL:AF191741 EMBL:BT005485 EMBL:AK118846
IPI:IPI00547870 PIR:T47954 RefSeq:NP_001118878.1 RefSeq:NP_191721.1
UniGene:At.20638 ProteinModelPortal:Q9SP08 SMR:Q9SP08 IntAct:Q9SP08
STRING:Q9SP08 PaxDb:Q9SP08 PRIDE:Q9SP08 DNASU:825335
EnsemblPlants:AT3G61620.1 EnsemblPlants:AT3G61620.2 GeneID:825335
KEGG:ath:AT3G61620 TAIR:At3g61620 InParanoid:Q9SP08
PhylomeDB:Q9SP08 ProtClustDB:CLSN2685258 ArrayExpress:Q9SP08
Genevestigator:Q9SP08 Uniprot:Q9SP08
Length = 241
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 108/214 (50%), Positives = 155/214 (72%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI-KVHGSV 68
GLR DGRR +E+R+I +GV S++DGSA E GNTKV+AAVYGPR ++NKS K +
Sbjct: 8 GLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHA 67
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +YSMA FSTG+R+ R + DR+++E+SL +RQ + A I++E+ P SQIDIF++VLQA
Sbjct: 68 VVLCEYSMAQFSTGDRR-RQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQA 126
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NAATLAL DAGIPMR+ V+CSA TPL+D++++E++ GG ++TV L
Sbjct: 127 DGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGIL 186
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
P KV+++++ KL ++ V A +GC I
Sbjct: 187 PKLDKVSLLQMDAKLPMETFETVFALASEGCKAI 220
>WB|WBGene00007201 [details] [associations]
symbol:exos-4.1 species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0008406
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 106/234 (45%), Positives = 148/234 (63%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M++++E+G R DGRR ++R I RLG+ ++GS Y+E GNTKVL AVYGP ++
Sbjct: 1 MNIISEHG--FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKS- 57
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S ++ I QYS FS ERK R RGDRK++EIS L +A + I++E PRSQ+D
Sbjct: 58 SKRIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLD 117
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
IF EV+Q DG N ACVNA +LAL DAGIPM+ A + + P+VD++ EET
Sbjct: 118 IFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLL 177
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P +T+A + +V ++EL +LH+DHL V+D A CAD++ L +QHL
Sbjct: 178 PRVTLATICGRDEVILVELQNRLHIDHLSTVMDAAKATCADVYECLAVVAQQHL 231
>UNIPROTKB|Q17533 [details] [associations]
symbol:exos-4.1 "Putative exosome complex component RRP41"
species:6239 "Caenorhabditis elegans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0002119 GO:GO:0010171
GO:GO:0040018 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 106/234 (45%), Positives = 148/234 (63%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M++++E+G R DGRR ++R I RLG+ ++GS Y+E GNTKVL AVYGP ++
Sbjct: 1 MNIISEHG--FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKS- 57
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S ++ I QYS FS ERK R RGDRK++EIS L +A + I++E PRSQ+D
Sbjct: 58 SKRIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLD 117
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
IF EV+Q DG N ACVNA +LAL DAGIPM+ A + + P+VD++ EET
Sbjct: 118 IFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLL 177
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P +T+A + +V ++EL +LH+DHL V+D A CAD++ L +QHL
Sbjct: 178 PRVTLATICGRDEVILVELQNRLHIDHLSTVMDAAKATCADVYECLAVVAQQHL 231
>POMBASE|SPAC3G9.10c [details] [associations]
symbol:rrp41 "exosomal 3'-to-5' phosphorolytic
exoribonuclease Rrp41 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=ISO] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=ISO] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
PomBase:SPAC3G9.10c Pfam:PF01138 GO:GO:0005829 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0044732 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666
EMBL:D89141 PIR:T11646 PIR:T11740 RefSeq:NP_594082.1
ProteinModelPortal:O42872 IntAct:O42872 STRING:O42872
EnsemblFungi:SPAC3G9.10c.1 GeneID:2543451 KEGG:spo:SPAC3G9.10c
OMA:AIMPKTG OrthoDB:EOG45MRFG NextBio:20804464 Uniprot:O42872
Length = 242
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 91/224 (40%), Positives = 136/224 (60%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGSV 68
GLRNDGRR E+R +CR+G+ +GSA+IE GNTKVL V GP PV + +
Sbjct: 11 GLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRT- 69
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+N + ++A FST + K R + DR+ L L+ I +E++PRSQI +++ VLQ
Sbjct: 70 FVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQD 129
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG +C+NA TLALIDAGIP++++V +A + L+D++ LEE+ LTVA L
Sbjct: 130 DGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALSW-LTVAVL 188
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
KV M+L +HLD+L V++ A+ G I+ + +A++Q
Sbjct: 189 GNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQ 232
>CGD|CAL0002905 [details] [associations]
symbol:orf19.4582 species:5476 "Candida albicans" [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0034473 "U1
snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR001247 CGD:CAL0002905
InterPro:IPR015847 Pfam:PF01138 EMBL:AACQ01000005 EMBL:AACQ01000006
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 RefSeq:XP_722654.1 RefSeq:XP_722799.1
ProteinModelPortal:Q5AMR4 STRING:Q5AMR4 GeneID:3635514
GeneID:3635642 KEGG:cal:CaO19.12051 KEGG:cal:CaO19.4582
Uniprot:Q5AMR4
Length = 240
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 94/227 (41%), Positives = 136/227 (59%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGP-RP-VRNKSIKVHG 66
GLR DGRR +ELR+ CR+ + SDGS+Y+EQGNTKV+ V GP P +R++
Sbjct: 8 GLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERA 67
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
++ +N ++A FST ERK R R +R+ E+ L + ++M ++PR+ I I V+VL
Sbjct: 68 NIEVNL--NIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVL 125
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
DGG A +N+ TLALIDAGI M +YV S L TPL+D+++LEE LTV
Sbjct: 126 CQDGGMLAAVINSITLALIDAGISMYDYVSGVSCGLYDQTPLLDVNNLEEH-DMSCLTVG 184
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K+A+M L K+ LD L VL + G I ++D +++H
Sbjct: 185 VIGKSEKLALMLLEDKMPLDRLESVLSIGIAGSHKIRELMDQEVRKH 231
>SGD|S000003427 [details] [associations]
symbol:SKI6 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=IC] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IMP]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IDA] [GO:0016075 "rRNA catabolic process"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034427 "nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'" evidence=IMP] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IGI;IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0070651 "nonfunctional rRNA decay" evidence=IC]
InterPro:IPR001247 SGD:S000003427 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0071039
GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211 RefSeq:NP_011711.3
GeneID:853109 KEGG:sce:YGR195W KO:K11600 GO:GO:0000176
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 GO:GO:0071051 KO:K03233 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 EMBL:X82775 EMBL:Z72981
GO:GO:0034475 GO:GO:0034476 GO:GO:0034473 OrthoDB:EOG45MRFG
EMBL:Z72980 EMBL:AY558509 PIR:S59180 RefSeq:NP_011717.4 PDB:2WP8
PDBsum:2WP8 ProteinModelPortal:P46948 SMR:P46948 DIP:DIP-2083N
IntAct:P46948 MINT:MINT-555587 STRING:P46948 PaxDb:P46948
EnsemblFungi:YGR195W GeneID:853115 KEGG:sce:YGR201C CYGD:YGR195w
EvolutionaryTrace:P46948 NextBio:973121 Genevestigator:P46948
GermOnline:YGR195W Uniprot:P46948
Length = 246
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 81/229 (35%), Positives = 126/229 (55%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ + + DGS+Y+EQGN K++ V GP+ R KS
Sbjct: 11 GLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L+N ++ FS ER K+ + +R+ EI L + +M ++PR+ IDI + VL+
Sbjct: 71 LLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLE 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + +N TLALIDAGI M +Y+ S L TPL+D + LEE +T+
Sbjct: 131 QDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMS-TVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+ S K++++ + K+ LD L VL + G + ++D +++H K
Sbjct: 190 VGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQK 238
>ASPGD|ASPL0000013004 [details] [associations]
symbol:AN3812 species:162425 "Emericella nidulans"
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004519 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 eggNOG:COG0689 HOGENOM:HOG000229515 RefSeq:XP_661416.1
ProteinModelPortal:Q5B6L8 STRING:Q5B6L8
EnsemblFungi:CADANIAT00004900 GeneID:2873233 KEGG:ani:AN3812.2
OMA:GCKQVRE OrthoDB:EOG4H1F52 Uniprot:Q5B6L8
Length = 265
Score = 271 (100.5 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 77/204 (37%), Positives = 111/204 (54%)
Query: 1 MDLLTEYG-GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN 59
+D T Y LR DGRR +ELR ++ ++ S GS+Y+ GNT +L +V+GP R
Sbjct: 3 LDTSTTYPLTKLRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRR 62
Query: 60 KSIK--VHGS--VLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVH 114
GS ++ ++A F++ +RK R G DR++ I+ LR A + + + ++
Sbjct: 63 GDATGGSAGSSGAVVEVDVNIAGFASVDRKRRAGGSDRQSGRIASTLRSAFQSHLHTYLY 122
Query: 115 PRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG---------- 164
P S I I V VL +DG A VNA TLAL+DAGIPM + C+A ++G
Sbjct: 123 PHSTISIHVSVLSSDGSVLAAAVNACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPMN 182
Query: 165 DT--PLVDISHLEETLGGPNLTVA 186
DT PL+D+S L E P LTVA
Sbjct: 183 DTLDPLLDVS-LPEEQELPFLTVA 205
Score = 81 (33.6 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 167 PLVDISHLEETLGGPNLTVA-----ALPLSG-----KVAVMELSQKLHLDHLPRVLDCAL 216
PL+D+S L E P LTVA A+ G KV+++ + K+H ++ +L +
Sbjct: 187 PLLDVS-LPEEQELPFLTVATTSAPAVMTDGDEDDMKVSMLTMDSKVHYSYIETMLAVGV 245
Query: 217 KGCADIHAILDTAIK 231
GC + ILD+ IK
Sbjct: 246 DGCKQVREILDSVIK 260
>UNIPROTKB|G4MM07 [details] [associations]
symbol:MGG_06785 "Exosome complex exonuclease RRP41"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 EMBL:CM001231
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 SUPFAM:SSF55666
RefSeq:XP_003709504.1 ProteinModelPortal:G4MM07
EnsemblFungi:MGG_06785T0 GeneID:2684958 KEGG:mgr:MGG_06785
Uniprot:G4MM07
Length = 280
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 87/246 (35%), Positives = 128/246 (52%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV----RNKSIKVHG 66
LR DGRR +ELR+ ++ + +DGS+Y+E G+TKV+ V GP R + +
Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITA 72
Query: 67 SVLINFQ----------YSMAV--FSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVH 114
+ Q S+ V FS+ +RK R RGD++ E+ + A+SA + + +
Sbjct: 73 TATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLF 132
Query: 115 PRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS-----LAGDT--- 166
S I + VL DG A +NAATLA +DAGIPM +YVVACSA A D
Sbjct: 133 QHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSYAAADESAD 192
Query: 167 PLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
PL+D++ EET P LT A L + +V V+ ++ L +L A+ GC + IL
Sbjct: 193 PLLDLNQQEET-ELPGLTAATLGATDRVVVLSCESRVQASRLEGMLAVAVDGCKQVREIL 251
Query: 227 DTAIKQ 232
D +K+
Sbjct: 252 DRVVKE 257
>GENEDB_PFALCIPARUM|PF14_0256 [details] [associations]
symbol:PF14_0256 "exosome complex exonuclease
rrp41, putative" species:5833 "Plasmodium falciparum" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE014187 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 KO:K11600
HOGENOM:HOG000229515 OMA:DVFIEVL SUPFAM:SSF55666
RefSeq:XP_001348430.1 ProteinModelPortal:Q8ILI7
EnsemblProtists:PF14_0256:mRNA GeneID:811838 KEGG:pfa:PF14_0256
EuPathDB:PlasmoDB:PF3D7_1427800 ProtClustDB:CLSZ2432000
Uniprot:Q8ILI7
Length = 246
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 71/231 (30%), Positives = 119/231 (51%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS---DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
G R DGR+ E R I+ LG ++ DG ++ E GNTK+ A + GP R K
Sbjct: 11 GYRIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNEYRRPDEKC-- 68
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
L+ ++ F+ E+K + D T EIS +R + I+ +++ S+I+IF+ ++
Sbjct: 69 --LVKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEINIFLYII 126
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
+ DGG A VN LALIDAGI ++ ++ A S + +VD + E G P LT+A
Sbjct: 127 ERDGGLKAAAVNTCILALIDAGIAIKYFISASSVLYLQNNIIVDGNQFEVNSGSPELTLA 186
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
S + ++E ++ +D +L + C + I+ +IK++ IK+
Sbjct: 187 IDMSSNNIVLLEFDAEVPIDIFQSMLKTCAQACIHVGNIMKLSIKENAIKL 237
>UNIPROTKB|Q8ILI7 [details] [associations]
symbol:PF14_0256 "Exosome complex exonuclease rrp41,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE014187 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 KO:K11600
HOGENOM:HOG000229515 OMA:DVFIEVL SUPFAM:SSF55666
RefSeq:XP_001348430.1 ProteinModelPortal:Q8ILI7
EnsemblProtists:PF14_0256:mRNA GeneID:811838 KEGG:pfa:PF14_0256
EuPathDB:PlasmoDB:PF3D7_1427800 ProtClustDB:CLSZ2432000
Uniprot:Q8ILI7
Length = 246
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 71/231 (30%), Positives = 119/231 (51%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS---DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
G R DGR+ E R I+ LG ++ DG ++ E GNTK+ A + GP R K
Sbjct: 11 GYRIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNEYRRPDEKC-- 68
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
L+ ++ F+ E+K + D T EIS +R + I+ +++ S+I+IF+ ++
Sbjct: 69 --LVKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEINIFLYII 126
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
+ DGG A VN LALIDAGI ++ ++ A S + +VD + E G P LT+A
Sbjct: 127 ERDGGLKAAAVNTCILALIDAGIAIKYFISASSVLYLQNNIIVDGNQFEVNSGSPELTLA 186
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
S + ++E ++ +D +L + C + I+ +IK++ IK+
Sbjct: 187 IDMSSNNIVLLEFDAEVPIDIFQSMLKTCAQACIHVGNIMKLSIKENAIKL 237
>ZFIN|ZDB-GENE-050522-362 [details] [associations]
symbol:exosc6 "exosome component 6" species:7955
"Danio rerio" [GO:0000178 "exosome (RNase complex)"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138
ZFIN:ZDB-GENE-050522-362 GO:GO:0005737 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
HSSP:Q9UXC2 eggNOG:COG0689 GeneTree:ENSGT00550000074804
HOGENOM:HOG000229515 EMBL:BC065602 EMBL:BC095173 IPI:IPI00483784
RefSeq:NP_001018322.1 UniGene:Dr.80144 ProteinModelPortal:Q6P0I8
STRING:Q6P0I8 Ensembl:ENSDART00000052348 GeneID:326786
KEGG:dre:326786 CTD:118460 HOVERGEN:HBG057826 InParanoid:Q6P0I8
KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K NextBio:20809731
Bgee:Q6P0I8 Uniprot:Q6P0I8
Length = 271
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 75/235 (31%), Positives = 129/235 (54%)
Query: 15 GRRGH-ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV--RNKSIKVHGSVLIN 71
G RG+ ++R + R G+ SQ+ GSAYIE GNTK++ +VYGP+ R+++ G ++ +
Sbjct: 35 GVRGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCD 94
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
F+ +A FS +R +G + ++S L +++ + +PRSQID+ V VL+ DG
Sbjct: 95 FR--LAPFSCVKRGAWIQGSEER-DLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGS 151
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG-----GPN---L 183
V A++AL DAGI M + V+ C+ +G+ LVD S+ EE G N +
Sbjct: 152 VLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCV 211
Query: 184 TVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
T+A LP +V+ + ++ D L + + GC ++ ++ A+ + + K A
Sbjct: 212 TLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQALTRAVKKKA 266
>UNIPROTKB|Q95Z13 [details] [associations]
symbol:RRP41A "Rrp41p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 SUPFAM:SSF55666 EMBL:AJ308997
ProteinModelPortal:Q95Z13 IntAct:Q95Z13 STRING:Q95Z13
EuPathDB:TriTrypDB:Tb427.10.7450 EuPathDB:TriTrypDB:Tb927.10.7450
Uniprot:Q95Z13
Length = 252
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 75/241 (31%), Positives = 118/241 (48%)
Query: 1 MDLLTEY--GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR 58
M ++ EY GLR DGRR +E R++ G S DG + G + V A VYGPR V
Sbjct: 1 MPVIKEYINPAGLRLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVS 60
Query: 59 NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ 118
N+ + V I +A F+ R+ + R R + +IS + + ++ +P SQ
Sbjct: 61 NRLDGKYNEVTITCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQ 120
Query: 119 IDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
I I +EVL+ DG + AC+NAA LALIDA I MR+ V + L +VD++ E
Sbjct: 121 IHICIEVLKQDGSDKAACINAACLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHS 180
Query: 179 GGPNLTVAALPLSG-KVAVMELSQKLHLDHLPRVLDCALKGCADI-HAILDTAIKQHLIK 236
P++ + + ME + +L + + R++ A K D+ L +++H
Sbjct: 181 QCPSICITVQGHDPTNIVWMESNSRLAPEVITRLVKVAQKASTDVFETALRGPLEEHAAT 240
Query: 237 V 237
V
Sbjct: 241 V 241
>UNIPROTKB|Q5RKV6 [details] [associations]
symbol:EXOSC6 "Exosome complex component MTR3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000178 "exosome (RNase complex)" evidence=IDA]
[GO:0045190 "isotype switching" evidence=ISS] [GO:0045006 "DNA
deamination" evidence=IDA] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0010467 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 GO:GO:0045190 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
GO:GO:0045006 HOGENOM:HOG000229515 SUPFAM:SSF55666 CTD:118460
HOVERGEN:HBG057826 KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K
EMBL:AC009060 EMBL:BC052252 IPI:IPI00073602 RefSeq:NP_478126.1
UniGene:Hs.660633 UniGene:Hs.740491 ProteinModelPortal:Q5RKV6
SMR:Q5RKV6 IntAct:Q5RKV6 STRING:Q5RKV6 PhosphoSite:Q5RKV6
DMDM:74736141 PaxDb:Q5RKV6 PeptideAtlas:Q5RKV6 PRIDE:Q5RKV6
Ensembl:ENST00000435634 GeneID:118460 KEGG:hsa:118460
UCSC:uc002eym.1 GeneCards:GC16M070284 HGNC:HGNC:19055 MIM:606490
neXtProt:NX_Q5RKV6 PharmGKB:PA134932096 eggNOG:NOG303282
InParanoid:Q5RKV6 PhylomeDB:Q5RKV6 ChiTaRS:EXOSC6
EvolutionaryTrace:Q5RKV6 GenomeRNAi:118460 NextBio:80292
Bgee:Q5RKV6 CleanEx:HS_EXOSC6 Genevestigator:Q5RKV6 Uniprot:Q5RKV6
Length = 272
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 81/239 (33%), Positives = 124/239 (51%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-------------IKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A F+ G R+ P G + E++L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTP--LVDISHLEETLGGPNLT 184
G A + AA LAL DAG+ M + VV C SLA G P L+D + LEE LT
Sbjct: 153 DGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLT 212
Query: 185 VAALPLSGKVAVMELSQKLHL-DHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
VA +P+ +VA + S + L + + L+GC ++ +L +Q L++ A RG
Sbjct: 213 VALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVL----QQSLVRAARRRG 267
>RGD|1309832 [details] [associations]
symbol:Exosc6 "exosome component 6" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0045006 "DNA deamination" evidence=IEA;ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0045830 "positive regulation
of isotype switching" evidence=ISO] [GO:0004532 "exoribonuclease
activity" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 RGD:1309832 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0045006 GeneTree:ENSGT00550000074804
SUPFAM:SSF55666 CTD:118460 KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K
IPI:IPI00359650 RefSeq:XP_003751927.1 RefSeq:XP_003753157.1
PRIDE:D3ZW38 Ensembl:ENSRNOT00000025179 GeneID:307850
KEGG:rno:307850 UCSC:RGD:1309832 Uniprot:D3ZW38
Length = 272
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 79/239 (33%), Positives = 123/239 (51%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-------------IKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A FS G R+ P+G + E+ L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFS-GRRRRAPQGSSEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTP--LVDISHLEETLGGPNLT 184
G A + AA LAL DAG+ M + VV C SL G +P L+D + LEE LT
Sbjct: 153 DGGSALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEEHSEAGLT 212
Query: 185 VAALPLSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
VA +P+ +VA ++ + + + L+GC ++ +L +Q L++ A RG
Sbjct: 213 VALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRLYPVL----QQCLVRAARRRG 267
>MGI|MGI:1919794 [details] [associations]
symbol:Exosc6 "exosome component 6" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0045006 "DNA deamination" evidence=ISO]
[GO:0045190 "isotype switching" evidence=IMP] [GO:0045830 "positive
regulation of isotype switching" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:1919794 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 GO:GO:0045190
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 HSSP:Q9UXC2
eggNOG:COG0689 HOGENOM:HOG000229515 SUPFAM:SSF55666 CTD:118460
HOVERGEN:HBG057826 KO:K12587 OrthoDB:EOG4D7Z6K EMBL:AK012102
EMBL:AK088532 EMBL:BC116985 EMBL:BC119082 IPI:IPI00466593
RefSeq:NP_082550.1 UniGene:Mm.24174 UniGene:Mm.334810
ProteinModelPortal:Q8BTW3 SMR:Q8BTW3 IntAct:Q8BTW3 STRING:Q8BTW3
PhosphoSite:Q8BTW3 PaxDb:Q8BTW3 PRIDE:Q8BTW3 GeneID:72544
KEGG:mmu:72544 UCSC:uc009nlp.1 InParanoid:Q8BTW3 NextBio:336459
CleanEx:MM_EXOSC6 Genevestigator:Q8BTW3 Uniprot:Q8BTW3
Length = 273
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 79/240 (32%), Positives = 123/240 (51%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-------------IKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDR-KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+L +F+ A FS G R+ P+G + E+ L L++A+ A+ +PR+Q+++ +L
Sbjct: 96 LLCDFR--RAPFS-GRRRRAPQGGGGEDRELGLALQEALEPAVRLGRYPRAQLEVSALLL 152
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTP--LVDISHLEETLGGPNL 183
+ G A + AA LAL DAG+ M + VV C SL G +P L+D + LEE L
Sbjct: 153 EDGGCALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEEHSAAGL 212
Query: 184 TVAALPLSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
TVA +P+ +VA ++ + + + L+GC ++ +L +Q L++ A RG
Sbjct: 213 TVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRLYPVL----QQCLVRAARRRG 268
>TAIR|locus:2124024 [details] [associations]
symbol:RRP41L "AT4G27490" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0034968 "histone lysine methylation" evidence=RCA] [GO:0048449
"floral organ formation" evidence=RCA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0009845 "seed germination" evidence=IMP]
[GO:0090351 "seedling development" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009845 GO:GO:0008408
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 KO:K12587
OMA:GRLLCDF EMBL:BT029998 EMBL:BT030054 IPI:IPI00544536
RefSeq:NP_194479.2 UniGene:At.46035 ProteinModelPortal:A2RVK7
SMR:A2RVK7 IntAct:A2RVK7 STRING:A2RVK7 PaxDb:A2RVK7 PRIDE:A2RVK7
EnsemblPlants:AT4G27490.1 GeneID:828858 KEGG:ath:AT4G27490
TAIR:At4g27490 InParanoid:A2RVK7 PhylomeDB:A2RVK7
ProtClustDB:CLSN2680990 Genevestigator:A2RVK7 Uniprot:A2RVK7
Length = 256
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 66/223 (29%), Positives = 111/223 (49%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV-LI 70
R DGR H+ R + G S + GSAY E GNTKV+ +V+GPR +K V+ V +
Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPR--ESKKAMVYSDVGRL 91
Query: 71 NFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
N S F++ T +G D K E S L +A+ IM E P++ +D+F VL++
Sbjct: 92 NCNVSYTNFAS---PTLGQGTDHK--EYSSMLHKALEGVIMMETFPKTTVDVFALVLESG 146
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G + ++ A+LAL DAGI M + + A S S G + ++D EE + + +P
Sbjct: 147 GSDLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMP 206
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
++ + ++ + ++ + L + + I+ +KQ
Sbjct: 207 SRYEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCLKQ 249
>UNIPROTKB|Q28F19 [details] [associations]
symbol:exosc6 "Exosome complex component MTR3" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000178 "exosome (RNase
complex)" evidence=ISS] InterPro:IPR001247 Pfam:PF01138
GO:GO:0005737 GO:GO:0005730 GO:GO:0003723 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG057826 KO:K12587 OrthoDB:EOG4D7Z6K EMBL:CR762221
EMBL:BC136080 RefSeq:NP_001017016.1 UniGene:Str.4704
ProteinModelPortal:Q28F19 SMR:Q28F19 STRING:Q28F19
Ensembl:ENSXETT00000016677 GeneID:549770 KEGG:xtr:549770 CTD:5916
Xenbase:XB-GENE-998313 OMA:LANCHSS Bgee:Q28F19 Uniprot:Q28F19
Length = 270
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 74/235 (31%), Positives = 125/235 (53%)
Query: 3 LLTEYGGGLRNDGRRGH---ELRKIRCRLGVFSQSDGSAYIEQGN--TKVLAAVYGPRP- 56
+L+E GG + GRRG E R + R G+ SQ+ GSAY+E G+ TKVL AV+GPR
Sbjct: 21 VLSEEGG--KAAGRRGRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRER 78
Query: 57 -VRNKSIKVHGSVLINFQYSMAVFST-GERK-TRPRGDRKTSEISLQLRQAVSAAIMSEV 113
+ + + G +L + ++ A FS G + P G + LQL++++ A+ +
Sbjct: 79 GMGGERAETRGRLLCDLRW--APFSRRGPWSGSCPAGP-SPRQAGLQLQESLEPAVRLDR 135
Query: 114 HPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDIS 172
+PR+++ ++V VL+ G A V+ A+LAL DAGI M + + C S G L+D
Sbjct: 136 YPRAEVIVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPD 195
Query: 173 HLEETLG-GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
EE G G ++++ LP +V+ + S + + + ++GC ++ +L
Sbjct: 196 DDEEEAGSGGTMSLSLLPTLNQVSGLISSGEWEGESSEEAVRLCMEGCQRLYPVL 250
>UNIPROTKB|F1S435 [details] [associations]
symbol:EXOSC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045006 "DNA deamination" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
Pfam:PF01138 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0045006 GeneTree:ENSGT00550000074804 OMA:GRLLCDF
EMBL:CU929739 Ensembl:ENSSSCT00000003013 Uniprot:F1S435
Length = 254
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 68/224 (30%), Positives = 108/224 (48%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-------------IKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGTGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A FS G R+ P G + E++L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFS-GRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
G A + AA LAL DAGI M + VV C +EE +LTVA
Sbjct: 153 DGGSALAAALTAAALALADAGIEMYDLVVGC---------------VEEERAAASLTVAL 197
Query: 188 LPLSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+P+ +VA ++ + + + L+GC ++ +L +
Sbjct: 198 MPVLNQVAGLLGSGEGGPTESWAEAVRLGLEGCQRLYPVLQQCL 241
>TAIR|locus:2075351 [details] [associations]
symbol:AT3G46210 "AT3G46210" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
[GO:0051604 "protein maturation" evidence=RCA] InterPro:IPR001247
Pfam:PF01138 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 KO:K12590 OMA:VRETCEA ProtClustDB:CLSN2684812
EMBL:AL355775 EMBL:BT003125 EMBL:AK228171 EMBL:AK317261
EMBL:AK317537 IPI:IPI00521571 PIR:T49262 RefSeq:NP_001030817.1
RefSeq:NP_001030818.1 RefSeq:NP_001030819.1 RefSeq:NP_001078250.1
RefSeq:NP_001190019.1 RefSeq:NP_190207.1 UniGene:At.43331
ProteinModelPortal:Q9LX74 SMR:Q9LX74 IntAct:Q9LX74 STRING:Q9LX74
PaxDb:Q9LX74 PRIDE:Q9LX74 EnsemblPlants:AT3G46210.1
EnsemblPlants:AT3G46210.2 EnsemblPlants:AT3G46210.3
EnsemblPlants:AT3G46210.4 EnsemblPlants:AT3G46210.5
EnsemblPlants:AT3G46210.6 GeneID:823766 KEGG:ath:AT3G46210
TAIR:At3g46210 InParanoid:Q9LX74 PhylomeDB:Q9LX74
Genevestigator:Q9LX74 Uniprot:Q9LX74
Length = 239
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 62/192 (32%), Positives = 91/192 (47%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR ++LR + C + + GSA QG+TKVLAAVYGP+ K N
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKK----------N 54
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
A F + + + E + L++ + + + V+P + + ++V+ DG
Sbjct: 55 ENAEKACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGS 114
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEET-------LGGPNL 183
+NAA AL+DAGIPM+ VA LA + LV D + LEE L PN
Sbjct: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNT 174
Query: 184 TVAALPLSGKVA 195
T++ LP VA
Sbjct: 175 TLSVLPEGSSVA 186
>UNIPROTKB|Q9NQT4 [details] [associations]
symbol:EXOSC5 "Exosome complex component RRP46"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=NAS]
[GO:0006364 "rRNA processing" evidence=NAS] [GO:0005737 "cytoplasm"
evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS] [GO:0000178
"exosome (RNase complex)" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IMP;TAS] [GO:0045006 "DNA
deamination" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 GO:GO:0051607
GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 EMBL:AC011462 GO:GO:0006364 GO:GO:0000175
GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 EMBL:AF281134
EMBL:AF285785 EMBL:BC007742 EMBL:BC107696 IPI:IPI00644775
RefSeq:NP_064543.3 UniGene:Hs.283741 ProteinModelPortal:Q9NQT4
SMR:Q9NQT4 DIP:DIP-29846N IntAct:Q9NQT4 MINT:MINT-1479651
STRING:Q9NQT4 PhosphoSite:Q9NQT4 DMDM:14285757 PaxDb:Q9NQT4
PRIDE:Q9NQT4 DNASU:56915 Ensembl:ENST00000221233 GeneID:56915
KEGG:hsa:56915 UCSC:uc002oqo.3 CTD:56915 GeneCards:GC19M041892
HGNC:HGNC:24662 MIM:606492 neXtProt:NX_Q9NQT4 PharmGKB:PA134890468
HOVERGEN:HBG051520 InParanoid:Q9NQT4 KO:K12590 OMA:VRETCEA
OrthoDB:EOG4PZJ7M PhylomeDB:Q9NQT4 EvolutionaryTrace:Q9NQT4
GenomeRNAi:56915 NextBio:62403 Bgee:Q9NQT4 CleanEx:HS_EXOSC5
Genevestigator:Q9NQT4 GermOnline:ENSG00000077348 Uniprot:Q9NQT4
Length = 235
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 65/203 (32%), Positives = 99/203 (48%)
Query: 6 EYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKV 64
E G G G G LR C + S+ DGSA QG+T VLA VYGP V+ +K I
Sbjct: 14 ENGTGSSPRGP-GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFN 72
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
++ + + + + E K+R R R T E A ++ +HPR+ I + ++
Sbjct: 73 KATLEVILRPKIGLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQ 121
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEETLGGPNL 183
V+ G C+NAA +AL+DAG+PMR + +L D LV D + +E L
Sbjct: 122 VVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAVL 181
Query: 184 TVAALPLSGKVAVMELSQKLHLD 206
T A + K+ +M ++ L+ D
Sbjct: 182 TFALDSVERKL-LMSSTKGLYSD 203
>UNIPROTKB|E1BAG2 [details] [associations]
symbol:EXOSC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0051607 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928
GO:GO:0045006 Pfam:PF03725 SUPFAM:SSF55666 OMA:VRETCEA
GeneTree:ENSGT00550000075002 EMBL:DAAA02047109 IPI:IPI00710844
Ensembl:ENSBTAT00000021338 Uniprot:E1BAG2
Length = 235
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 60/191 (31%), Positives = 95/191 (49%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVILRPKT 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 85 GLPGVAE-KSRERLIRNTCE----------AVVLGALHPRTSITVVLQVVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEETLGGPNLTVAALPLSGKVA 195
+NAA +AL+DAG+PMR + +L D T ++D + +E LT A + K+
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDSDGTLMLDPTAKQEKEARAVLTFALDSVERKL- 192
Query: 196 VMELSQKLHLD 206
+M ++ L+ D
Sbjct: 193 LMSTTKGLYSD 203
>MGI|MGI:107889 [details] [associations]
symbol:Exosc5 "exosome component 5" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006401 "RNA catabolic process" evidence=IMP]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:107889 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0051607 GO:GO:0003723 GO:GO:0006401
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0006364 GO:GO:0043928 GO:GO:0045006 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 CTD:56915
HOVERGEN:HBG051520 KO:K12590 OMA:VRETCEA OrthoDB:EOG4PZJ7M
EMBL:AK007372 EMBL:AK006475 EMBL:BC034358 IPI:IPI00133532
RefSeq:NP_613052.1 UniGene:Mm.207484 UniGene:Mm.27853
ProteinModelPortal:Q9CRA8 SMR:Q9CRA8 IntAct:Q9CRA8 STRING:Q9CRA8
PhosphoSite:Q9CRA8 PaxDb:Q9CRA8 PRIDE:Q9CRA8
Ensembl:ENSMUST00000079634 GeneID:27998 KEGG:mmu:27998
UCSC:uc009fti.2 GeneTree:ENSGT00550000075002 InParanoid:Q9CRA8
NextBio:306496 Bgee:Q9CRA8 CleanEx:MM_EXOSC5 Genevestigator:Q9CRA8
GermOnline:ENSMUSG00000061286 Uniprot:Q9CRA8
Length = 235
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 60/188 (31%), Positives = 94/188 (50%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
E K+R R R T E A ++ +HPR+ I + ++V+ G C+NA
Sbjct: 88 GVAE-KSRERLVRNTCE----------AVVLGALHPRTSITVVLQVVSDAGSLLACCLNA 136
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEETLGGPNLTVAALPLSGKVAVME 198
A +AL+DAG+PMR + +L D LV D + +E LT A L + + +M
Sbjct: 137 ACMALVDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFA-LDSAEQKLLMS 195
Query: 199 LSQKLHLD 206
++ L+ D
Sbjct: 196 TTKGLYSD 203
>ZFIN|ZDB-GENE-060503-675 [details] [associations]
symbol:exosc5 "exosome component 5" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-060503-675 InterPro:IPR020568 SUPFAM:SSF54211
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00550000075002
EMBL:BX649594 IPI:IPI00483802 Ensembl:ENSDART00000125931
ArrayExpress:F1REL3 Bgee:F1REL3 Uniprot:F1REL3
Length = 243
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 63/220 (28%), Positives = 102/220 (46%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR+ + S+ DGS+ QG+T +LA VYGP V+ +K I +V + Q M +
Sbjct: 35 LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLP 94
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
S ER R + R+T E AA++ +HPRS + + ++V+ DG C+NA
Sbjct: 95 SVRER-AREQCVRETCE----------AALLLTLHPRSSLTVILQVVHDDGSLLSCCLNA 143
Query: 140 ATLALIDAGIPMREYV--VACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVM 197
A +AL+DAG+PM V C+ S G + D + +E LT A V +
Sbjct: 144 ACMALMDAGLPMSRLFCSVTCAISKEGQI-ITDPTARQEKESRALLTFAIDSNERNVLMS 202
Query: 198 ELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+ + L + + + K I ++K+ K+
Sbjct: 203 STTGSFSVQELQQCIAISQKASEQIFQFYRDSVKRRYSKM 242
>RGD|1307861 [details] [associations]
symbol:Exosc5 "exosome component 5" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0035327
"transcriptionally active chromatin" evidence=IEA;ISO] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA;ISO] [GO:0045006
"DNA deamination" evidence=IEA;ISO] [GO:0051607 "defense response
to virus" evidence=IEA;ISO] [GO:0004532 "exoribonuclease activity"
evidence=ISO] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
RGD:1307861 GO:GO:0051607 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928 GO:GO:0045006
Pfam:PF03725 SUPFAM:SSF55666 CTD:56915 KO:K12590 OMA:VRETCEA
GeneTree:ENSGT00550000075002 IPI:IPI00201730 RefSeq:NP_001100963.2
UniGene:Rn.7400 Ensembl:ENSRNOT00000028026 GeneID:308441
KEGG:rno:308441 UCSC:RGD:1307861 NextBio:658885 ArrayExpress:F1LSX7
Uniprot:F1LSX7
Length = 235
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 60/188 (31%), Positives = 94/188 (50%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
E K+R R R T E A ++ +HPR+ I + ++V+ G C+NA
Sbjct: 88 GVAE-KSRERLIRNTCE----------AVVLGALHPRTSITVVLQVVSDTGSLLACCLNA 136
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEETLGGPNLTVAALPLSGKVAVME 198
A +AL+DAG+PMR + +L D LV D + +E LT A L + + +M
Sbjct: 137 ACMALVDAGVPMRALFCGVTCALDPDGNLVLDPTTKQEKEARAILTFA-LDSAEQKLLMS 195
Query: 199 LSQKLHLD 206
++ L+ D
Sbjct: 196 ATKGLYSD 203
>POMBASE|SPBC211.08c [details] [associations]
symbol:SPBC211.08c "exosomal 3'-5' exoribonuclease,
PH-like (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISM]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISO]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISO]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0034661
"ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 Pfam:PF01138
PomBase:SPBC211.08c GO:GO:0005829 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 HSSP:Q9UXC2 eggNOG:COG0689
HOGENOM:HOG000229515 PROSITE:PS01277 KO:K12587 PIR:T50343
RefSeq:NP_596618.1 ProteinModelPortal:Q9P7R3 STRING:Q9P7R3
EnsemblFungi:SPBC211.08c.1 GeneID:2540412 KEGG:spo:SPBC211.08c
OMA:ADANIDC OrthoDB:EOG415KPS NextBio:20801539 Uniprot:Q9P7R3
Length = 257
Score = 184 (69.8 bits), Expect = 6.4e-14, P = 6.4e-14
Identities = 45/159 (28%), Positives = 85/159 (53%)
Query: 22 RKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFST 81
RKI +LG +++ GS+Y E K+ V GPRP +K+ S +N ++ ++ FST
Sbjct: 36 RKIYLKLGWATKAVGSSYFESEKIKIACTVSGPRP--SKTFAFRSSAKLNCEFRLSPFST 93
Query: 82 GERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG--NFCACVNA 139
R+ + + S S + A+S +I+ ++P+S ID++++V+++DG A ++
Sbjct: 94 SVRQGHVQTVEEKS-YSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGALATLAAAISC 152
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTP--LVDISHLEE 176
A+ A+ DA I + V S +T +D +++E
Sbjct: 153 ASSAIADANIDCIDLVTGSSVLFNPNTDEYWIDPDYVDE 191
>UNIPROTKB|Q9KVD6 [details] [associations]
symbol:rph "Ribonuclease PH" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0004540 "ribonuclease
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006401
GO:GO:0008033 GO:GO:0000049 GO:GO:0004540 InterPro:IPR020568
SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725 SUPFAM:SSF55666
InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549 KO:K00989
OMA:MLPRATG ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 PIR:D82350 RefSeq:NP_229867.2
ProteinModelPortal:Q9KVD6 SMR:Q9KVD6 DNASU:2614709 GeneID:2614709
KEGG:vch:VC0210 PATRIC:20079464 Uniprot:Q9KVD6
Length = 238
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 61/232 (26%), Positives = 103/232 (44%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R D R ++R I+ + ++GS +E GNTKVL V + +K G +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVP-RWLKGQGKGWV 59
Query: 71 NFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+Y M +T R R + K T EI + +++ A + E I + +V+
Sbjct: 60 TAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVI 119
Query: 127 QADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISHLE 175
QADGG A + A++AL DA PM+ +V A S + G+ L D+ ++E
Sbjct: 120 QADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVE 179
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAI 225
++ ++ V + + ++ H L +L A KG ADI A+
Sbjct: 180 DSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAV 231
>TIGR_CMR|VC_0210 [details] [associations]
symbol:VC_0210 "ribonuclease PH" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
[GO:0008033 "tRNA processing" evidence=ISS] InterPro:IPR002381
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006401 GO:GO:0008033 GO:GO:0000049
GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 KO:K00989 OMA:MLPRATG ProtClustDB:PRK00173
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 PIR:D82350
RefSeq:NP_229867.2 ProteinModelPortal:Q9KVD6 SMR:Q9KVD6
DNASU:2614709 GeneID:2614709 KEGG:vch:VC0210 PATRIC:20079464
Uniprot:Q9KVD6
Length = 238
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 61/232 (26%), Positives = 103/232 (44%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R D R ++R I+ + ++GS +E GNTKVL V + +K G +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVP-RWLKGQGKGWV 59
Query: 71 NFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+Y M +T R R + K T EI + +++ A + E I + +V+
Sbjct: 60 TAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVI 119
Query: 127 QADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISHLE 175
QADGG A + A++AL DA PM+ +V A S + G+ L D+ ++E
Sbjct: 120 QADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVE 179
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAI 225
++ ++ V + + ++ H L +L A KG ADI A+
Sbjct: 180 DSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAV 231
>UNIPROTKB|Q84T68 [details] [associations]
symbol:RRP46 "Exosome complex exonuclease RRP46 homolog"
species:39947 "Oryza sativa Japonica Group" [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0004536
"deoxyribonuclease activity" evidence=IDA] [GO:0004540
"ribonuclease activity" evidence=IDA] [GO:0042802 "identical
protein binding" evidence=IPI] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005730 GO:GO:0003727
EMBL:DP000009 EMBL:AP008209 GO:GO:0003690 GO:GO:0004527
GO:GO:0000178 GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0004536 GO:GO:0006364 eggNOG:COG0689 SUPFAM:SSF55666
KO:K12590 EMBL:AC120506 EMBL:AK069107 RefSeq:NP_001051936.1
UniGene:Os.47503 PDB:3HKM PDBsum:3HKM ProteinModelPortal:Q84T68
STRING:Q84T68 EnsemblPlants:LOC_Os03g63720.1 GeneID:4334824
KEGG:dosa:Os03t0854200-01 KEGG:osa:4334824 Gramene:Q84T68
OMA:EKACIEV ProtClustDB:CLSN2684812 EvolutionaryTrace:Q84T68
Uniprot:Q84T68
Length = 238
Score = 171 (65.3 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 48/166 (28%), Positives = 78/166 (46%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR ++LR C ++ GSA QG+T VLAAVYGP+P K + +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
M TG+ ++ E + L++ + + + VHP + + ++V+ DG
Sbjct: 65 VWKPM----TGQI------GKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGS 114
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEE 176
+NA AL+ AGIP++ VA + D ++ D + EE
Sbjct: 115 LLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEE 160
>TIGR_CMR|CHY_1758 [details] [associations]
symbol:CHY_1758 "polyribonucleotide
nucleotidyltransferase" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006401 "RNA
catabolic process" evidence=ISS] [GO:0006402 "mRNA catabolic
process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:Q9UXC2 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824
RefSeq:YP_360578.1 ProteinModelPortal:Q3ABA6 STRING:Q3ABA6
GeneID:3727728 KEGG:chy:CHY_1758 PATRIC:21276631
BioCyc:CHYD246194:GJCN-1757-MONOMER Uniprot:Q3ABA6
Length = 731
Score = 182 (69.1 bits), Expect = 8.9e-12, P = 8.9e-12
Identities = 59/186 (31%), Positives = 90/186 (48%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV----YGPRPVRNKSIKVH 65
G+R DGR+ E+R I C +G+ ++ GS +G T+VL+ V G + + + +
Sbjct: 324 GIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTLGAVGDVQILD-DLGIE 382
Query: 66 GSVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
S Y+ +S GE R R G R+ +L R EV P + I I E
Sbjct: 383 ESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHGALAERALEPVIPPEEVFPYT-IRIVSE 441
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--GDTP--LVDISHLEETLGG 180
VL+++G V +TLAL+DAG+P++ V + L GD L DI +E+ LG
Sbjct: 442 VLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDEVAILTDIQGIEDALGD 501
Query: 181 PNLTVA 186
+ VA
Sbjct: 502 MDFKVA 507
>TIGR_CMR|BA_3944 [details] [associations]
symbol:BA_3944 "polyribonucleotide nucleotidyltransferase"
species:198094 "Bacillus anthracis str. Ames" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:NP_846188.1 RefSeq:YP_020583.1
RefSeq:YP_029909.1 ProteinModelPortal:Q81WM8 IntAct:Q81WM8
DNASU:1086877 EnsemblBacteria:EBBACT00000009810
EnsemblBacteria:EBBACT00000017999 EnsemblBacteria:EBBACT00000024497
GeneID:1086877 GeneID:2814451 GeneID:2852317 KEGG:ban:BA_3944
KEGG:bar:GBAA_3944 KEGG:bat:BAS3658
BioCyc:BANT260799:GJAJ-3716-MONOMER
BioCyc:BANT261594:GJ7F-3832-MONOMER Uniprot:Q81WM8
Length = 712
Score = 180 (68.4 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 65/217 (29%), Positives = 105/217 (48%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA----AVYGPRPVRNKSIKVHG 66
+R DGR+G E+R + +G+ S++ GS +G T+ L+ G + + + V
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILD-GLGVEE 373
Query: 67 SVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
S Y+ FS GE R R G R+ +L R A+ I SE + + EV
Sbjct: 374 SKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGER-ALEPVIPSEKDFPYTVRLVSEV 432
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--GD--TPLVDISHLEETLGGP 181
L+++G A + +TLA++DAG+P++ V + L G+ T L DI +E+ LG
Sbjct: 433 LESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDHLGDM 492
Query: 182 NLTVAALPLSGKVAVMELSQKLHLDHLPR-VLDCALK 217
+ VA G A L + +D L R +L+ AL+
Sbjct: 493 DFKVAGTA-HGVTA---LQMDIKIDGLSREILEEALQ 525
>UNIPROTKB|Q95Z09 [details] [associations]
symbol:RRP41B "Rrp41p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR001247 Pfam:PF01138 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AJ309001 ProteinModelPortal:Q95Z09
IntAct:Q95Z09 STRING:Q95Z09 GenomeReviews:AE017150_GR
eggNOG:NOG277594 ProtClustDB:CLSZ2438846 Uniprot:Q95Z09
Length = 256
Score = 170 (64.9 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 51/155 (32%), Positives = 69/155 (44%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-------IKV 64
R DGR E+R R SQ DGSA+ QG T V A+ GP R ++ I V
Sbjct: 6 RRDGRTAREMRGKELRTSDLSQFDGSAWYSQGLTAVTVAINGPTAARQENYRRCTTCIHV 65
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ + I + ER+ R R + E+ L V A + + PR ++ V
Sbjct: 66 NRAARIPQEGGTGRLIMMERRERERCE--DGELKQFLTSLVEAIVCLDRFPRCVLEAHVT 123
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACS 159
VL DG F NA AL+DAG+P R + A S
Sbjct: 124 VLMDDGALFAVASNAIMCALLDAGVPCRSTIAAVS 158
>FB|FBgn0037815 [details] [associations]
symbol:Rrp46 "Rrp46" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IMP] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000176 eggNOG:COG0689 SUPFAM:SSF55666
EMBL:AY058481 ProteinModelPortal:Q95TW1 SMR:Q95TW1 STRING:Q95TW1
PaxDb:Q95TW1 PRIDE:Q95TW1 FlyBase:FBgn0037815 InParanoid:Q95TW1
OrthoDB:EOG4BRV2M ArrayExpress:Q95TW1 Bgee:Q95TW1 Uniprot:Q95TW1
Length = 233
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 43/143 (30%), Positives = 76/143 (53%)
Query: 20 ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL-INFQYSMAV 78
+LR++ C S+ DGS QG T ++ AV GP V+ +++ + GS L N++ +
Sbjct: 13 KLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAGL 72
Query: 79 FSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC-V 137
P+ + E ++ R + A++SE HPRS++ + ++ L+ D G+ AC V
Sbjct: 73 ---------PQVTDRIREAAI--RDVLELALLSEAHPRSKMSVQIQELE-DRGSIDACAV 120
Query: 138 NAATLALIDAGIPMREYVVACSA 160
N A LA++ G+P++ A A
Sbjct: 121 NCACLAMLIGGLPLKYSFAAVHA 143
>FB|FBgn0036916 [details] [associations]
symbol:Mtr3 "Mtr3" species:7227 "Drosophila melanogaster"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010468 "regulation of
gene expression" evidence=IMP] InterPro:IPR001247 Pfam:PF01138
GO:GO:0005737 EMBL:AE014296 GO:GO:0016787 GO:GO:0010468
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176
GeneTree:ENSGT00550000074804 KO:K12587 FlyBase:FBgn0036916
UniGene:Dm.13639 EMBL:BT030767 RefSeq:NP_649157.1 UniGene:Dm.27179
SMR:Q9VW53 IntAct:Q9VW53 MINT:MINT-905327 STRING:Q9VW53
EnsemblMetazoa:FBtr0074918 GeneID:40173 KEGG:dme:Dmel_CG8025
UCSC:CG8025-RA CTD:40173 InParanoid:Q9VW53 OMA:STAINCC
GenomeRNAi:40173 NextBio:817403 Uniprot:Q9VW53
Length = 326
Score = 171 (65.3 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 48/153 (31%), Positives = 76/153 (49%)
Query: 27 RLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKT 86
R GV + GSAY+E GNTKVLA V P+ + S + ++N + A FSTG+ +
Sbjct: 53 RAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFSTGDLDS 112
Query: 87 RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALID 146
P +R +S L +A+ + Q+DI V +L DG +N +AL++
Sbjct: 113 VPERER---HLSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVE 169
Query: 147 AGIPMREYVVACSASLAGDTPLVDIS-HLEETL 178
GI + + A +A + D ++ S +EE L
Sbjct: 170 CGISTYDLITASTACIYRDHVFLNPSAKVEELL 202
>TIGR_CMR|GSU_1795 [details] [associations]
symbol:GSU_1795 "ribonuclease PH" species:243231
"Geobacter sulfurreducens PCA" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033
GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:NP_952845.1 ProteinModelPortal:Q74C79
SMR:Q74C79 GeneID:2686347 KEGG:gsu:GSU1795 PATRIC:22026445
BioCyc:GSUL243231:GH27-1829-MONOMER Uniprot:Q74C79
Length = 238
Score = 163 (62.4 bits), Expect = 8.4e-11, P = 8.4e-11
Identities = 56/183 (30%), Positives = 89/183 (48%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R+DGR LR IR ++GS +E G+TKVL V ++ G +
Sbjct: 1 MRSDGRNPASLRNIRITRKYLKHAEGSVLVEFGDTKVLCTASVEESVP-PFLRGKGGGWV 59
Query: 71 NFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAI-MSEVHPRSQIDIFVEV 125
+YSM +T R R K T EI + +++ A ++ + RS + I +V
Sbjct: 60 TAEYSMLPRATHTRSPREAAKGKLGGRTHEIQRLIGRSLRAVTDLTLLGERSVL-IDCDV 118
Query: 126 LQADGGNFCACVNAATLALIDA-------G----IPMREYVVACSASLAGDTPLVDISHL 174
LQADGG A + A +AL+DA G +P+RE V A S + G L+D++++
Sbjct: 119 LQADGGTRTASITGAYVALVDAFQWLVSQGTIATLPVREAVAAVSVGIVGGEVLLDLNYI 178
Query: 175 EET 177
E++
Sbjct: 179 EDS 181
>GENEDB_PFALCIPARUM|PFB0415c [details] [associations]
symbol:PFB0415c "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AE001362 RefSeq:XP_001349602.2
ProteinModelPortal:O96177 EnsemblProtists:PFB0415c:mRNA
GeneID:812684 KEGG:pfa:PFB0415c EuPathDB:PlasmoDB:PF3D7_0209200
HOGENOM:HOG000284275 ProtClustDB:CLSZ2446608 Uniprot:O96177
Length = 275
Score = 166 (63.5 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 51/175 (29%), Positives = 86/175 (49%)
Query: 8 GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS 67
G R + R+ +E+R + +LG S + GNTK+L VYGP P + G
Sbjct: 28 GSFKRINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNPDSKYATYSKGK 87
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
V ++ + S+ + + G R R D +I L + +S I+ E +P+ I I ++Q
Sbjct: 88 VFLDVK-SLNINTIGA-SDRQRDD----DIKSLLIECISNIILLEKYPQCSIKIKCLIIQ 141
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSAS--LAGDTP----LVDISHLEE 176
DGG A + +LALI A I M++ +++ + + + T LVD+ +EE
Sbjct: 142 DDGGCLSATLTCISLALIKAQIQMKDIIISININSIICPVTKKMYHLVDLDGMEE 196
>UNIPROTKB|O96177 [details] [associations]
symbol:PFB0415c "3' exoribonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AE001362 RefSeq:XP_001349602.2
ProteinModelPortal:O96177 EnsemblProtists:PFB0415c:mRNA
GeneID:812684 KEGG:pfa:PFB0415c EuPathDB:PlasmoDB:PF3D7_0209200
HOGENOM:HOG000284275 ProtClustDB:CLSZ2446608 Uniprot:O96177
Length = 275
Score = 166 (63.5 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 51/175 (29%), Positives = 86/175 (49%)
Query: 8 GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS 67
G R + R+ +E+R + +LG S + GNTK+L VYGP P + G
Sbjct: 28 GSFKRINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNPDSKYATYSKGK 87
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
V ++ + S+ + + G R R D +I L + +S I+ E +P+ I I ++Q
Sbjct: 88 VFLDVK-SLNINTIGA-SDRQRDD----DIKSLLIECISNIILLEKYPQCSIKIKCLIIQ 141
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSAS--LAGDTP----LVDISHLEE 176
DGG A + +LALI A I M++ +++ + + + T LVD+ +EE
Sbjct: 142 DDGGCLSATLTCISLALIKAQIQMKDIIISININSIICPVTKKMYHLVDLDGMEE 196
>UNIPROTKB|Q8IEW0 [details] [associations]
symbol:EAP4 "Exosome-associated protein 4" species:5691
"Trypanosoma brucei" [GO:0000178 "exosome (RNase complex)"
evidence=IDA] InterPro:IPR001247 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AJ516002
ProteinModelPortal:Q8IEW0 IntAct:Q8IEW0 STRING:Q8IEW0
EuPathDB:TriTrypDB:Tb11.01.2820 EuPathDB:TriTrypDB:Tb427tmp.01.2820
Uniprot:Q8IEW0
Length = 227
Score = 153 (58.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 54/186 (29%), Positives = 83/186 (44%)
Query: 12 RNDGRRG-HELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
R+ GRR E+R L V QS SA IE G+T+V+ AV+ P+ + ++ G V
Sbjct: 3 RSHGRRSPDEVRYPHIVLNVLGQSYSSACIEVGSTRVVCAVHHPQQLIDEYRGSRGRVAC 62
Query: 71 NFQYSMAVFSTGERKTRPRGD-RKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ S + + R D +++L L V A++ E P+ +++ VE+L D
Sbjct: 63 TVRRSSRA---QKHELAFRADVTPEKDLALALEGVVEQAVVLEKIPQLLVEVVVEILAED 119
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEETLGGPNLTVAAL 188
GG + A AL G M + AC A+L D +V D S E A+
Sbjct: 120 GGLWDAIATGVCAALASGGFEMYDTFSACGAALLPDGSIVTDPSATEWNTAKATAVTCAM 179
Query: 189 PLSGKV 194
SG +
Sbjct: 180 LNSGNM 185
>UNIPROTKB|P50849 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 GO:GO:0030420 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 EMBL:U29668 EMBL:Z80835 PIR:S70691
RefSeq:NP_389551.1 ProteinModelPortal:P50849 SMR:P50849
IntAct:P50849 EnsemblBacteria:EBBACT00000003076 GeneID:939646
KEGG:bsu:BSU16690 PATRIC:18975145 GenoList:BSU16690
BioCyc:BSUB:BSU16690-MONOMER Uniprot:P50849
Length = 705
Score = 163 (62.4 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 66/237 (27%), Positives = 111/237 (46%)
Query: 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA----VYGPRPVR 58
L+TE +R DGR ++R + +G+ ++ GS +G T+ L+ G +
Sbjct: 309 LITEEK--VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQIL 366
Query: 59 NKSIKVHGSVLINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRS 117
+ + V S Y+ FS GE R G R+ +L R A+ I SE
Sbjct: 367 D-GLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGER-ALEPVIPSEKDFPY 424
Query: 118 QIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASL--AGD--TPLVDISH 173
+ + EVL+++G A + A+TLA++DAG+P++ V + L +G+ T L DI
Sbjct: 425 TVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVLTDIQG 484
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELS-QKLHLDHLPRVLDCALKGCADI-HAILDT 228
+E+ LG + VA M++ + L + L L A KG +I +++L T
Sbjct: 485 MEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLAT 541
>TIGR_CMR|CPS_0112 [details] [associations]
symbol:CPS_0112 "ribonuclease PH" species:167879
"Colwellia psychrerythraea 34H" [GO:0004549 "tRNA-specific
ribonuclease activity" evidence=ISS] [GO:0042780 "tRNA 3'-end
processing" evidence=ISS] InterPro:IPR002381 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 HSSP:O29756
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 RefSeq:YP_266880.1
ProteinModelPortal:Q48AN3 SMR:Q48AN3 STRING:Q48AN3 GeneID:3519509
KEGG:cps:CPS_0112 PATRIC:21463641
BioCyc:CPSY167879:GI48-215-MONOMER Uniprot:Q48AN3
Length = 237
Score = 150 (57.9 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 55/237 (23%), Positives = 103/237 (43%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R GR ++R + + ++GS IE G+TKV+ V + +K G +
Sbjct: 1 MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATVEVGVP-RFLKGQGKGWV 59
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTS----EISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+Y M ST R R K S EIS + +A+ AA+ + + I + +V+
Sbjct: 60 TAEYGMLPRSTHTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISVDCDVI 119
Query: 127 QADGGNFCACVNAATLALIDA-------GI----PMREYVVACSASLAGDTPLVDISHLE 175
QADGG A + A +AL+DA I P++ + A S + P+ D+ + E
Sbjct: 120 QADGGTRTAAITGACVALVDALNYMRAKDIIKTNPLKHMIAAVSVGIYKGEPVADLDYPE 179
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQK--LHLDHLPRVLDCALKGCADIHAILDTAI 230
++ ++ V + V +++ + + +L+ A G ++ + A+
Sbjct: 180 DSAADTDMNVVMTDTGKLIEVQGTAEEEPFSFEEMQAMLELAKNGINELFDLQKAAL 236
>UNIPROTKB|P0CG19 [details] [associations]
symbol:rph "RNase PH monomer" species:83333 "Escherichia
coli K-12" [GO:0004549 "tRNA-specific ribonuclease activity"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IDA] [GO:0042780 "tRNA 3'-end
processing" evidence=IDA] [GO:0009022 "tRNA nucleotidyltransferase
activity" evidence=IEA;IDA] [GO:0006399 "tRNA metabolic process"
evidence=EXP] InterPro:IPR002381 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0004527
EMBL:L10328 GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211
EMBL:V01578 Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336
PROSITE:PS01277 GO:GO:0042780 GO:GO:0004549 KO:K00989 GO:GO:0009022
HAMAP:MF_00564 TIGRFAMs:TIGR01966 EMBL:X72920 PIR:A04470
RefSeq:YP_001491547.1 ProteinModelPortal:P0CG19 SMR:P0CG19
IntAct:P0CG19 EnsemblBacteria:EBESCT00000003143
EnsemblBacteria:EBESCT00000018485 GeneID:948156 KEGG:eco:b3643
PATRIC:32122773 EcoGene:EG10863 BioCyc:EcoCyc:EG10863-MONOMER
BioCyc:MetaCyc:EG10863-MONOMER Uniprot:P0CG19
Length = 228
Score = 149 (57.5 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 52/190 (27%), Positives = 87/190 (45%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R GR +++R + ++GS +E G+TKVL V + +K G I
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVP-RFLKGQGQGWI 59
Query: 71 NFQYSMAVFSTGERKTRP--RGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+Y M ST R R +G + +T EI + +A+ AA+ + I + +VL
Sbjct: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119
Query: 127 QADGGNFCACVNAATLALIDA-------GI----PMREYVVACSASLAGDTPLVDISHLE 175
QADGG A + A +AL+DA G PM+ V A S + + D+ ++E
Sbjct: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179
Query: 176 ETLGGPNLTV 185
++ ++ V
Sbjct: 180 DSAAETDMNV 189
>UNIPROTKB|Q10628 [details] [associations]
symbol:rph "Ribonuclease PH" species:1773 "Mycobacterium
tuberculosis" [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549
HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG ProtClustDB:PRK00173
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 PIR:C70739
RefSeq:NP_215856.1 RefSeq:NP_335832.1 RefSeq:YP_006514718.1
PDB:3B4T PDBsum:3B4T ProteinModelPortal:Q10628 SMR:Q10628
PRIDE:Q10628 EnsemblBacteria:EBMYCT00000003516
EnsemblBacteria:EBMYCT00000071385 GeneID:13319926 GeneID:886864
GeneID:924657 KEGG:mtc:MT1381 KEGG:mtu:Rv1340 KEGG:mtv:RVBD_1340
PATRIC:18124810 TubercuList:Rv1340 EvolutionaryTrace:Q10628
Uniprot:Q10628
Length = 259
Score = 151 (58.2 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 65/231 (28%), Positives = 96/231 (41%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR HELR + G GS IE G+TKVL V K G +
Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWR-KATGLGWLT 62
Query: 72 FQYSM---AVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y+M A S +R++ R R +T EIS + +++ A I + I I +VLQ
Sbjct: 63 AEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQ 122
Query: 128 ADGGNFCACVNAATLALIDAGI------------PMREYVVACSASLAGDTPLVDISHLE 175
ADGG A + A +AL DA P+ + A S + VD+ + E
Sbjct: 123 ADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHA 224
++ ++ V A V + + L ++LD AL C + A
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFA 233
>TIGR_CMR|CHY_0314 [details] [associations]
symbol:CHY_0314 "ribonuclease PH" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004549
"tRNA-specific ribonuclease activity" evidence=ISS] [GO:0008033
"tRNA processing" evidence=ISS] InterPro:IPR002381
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 HSSP:O29756
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:YP_359184.1 ProteinModelPortal:Q3AFA0
SMR:Q3AFA0 STRING:Q3AFA0 GeneID:3726312 KEGG:chy:CHY_0314
PATRIC:21273799 BioCyc:CHYD246194:GJCN-315-MONOMER Uniprot:Q3AFA0
Length = 254
Score = 150 (57.9 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 53/229 (23%), Positives = 106/229 (46%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR +LR ++ ++GS IE G+T+V+ V + K G I
Sbjct: 1 MRIDGREKDQLRTVKITTNYIKHAEGSVLIEMGDTRVVCTATVEDKVPPFA-KGEGKGWI 59
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRS--QIDIFVE--VL 126
+Y M ST R R + S +L++++ + A+ V ++ + ++++ V+
Sbjct: 60 TAEYGMLPRSTETRNVREATKGRQSGRTLEIQRLIGRALRGVVDLKALGERTLWIDCDVI 119
Query: 127 QADGGNFCACVNAATLAL-------IDAGI----PMREYVVACSASLAGDTPLVDISHLE 175
QADGG A + + +AL ++ GI P++++V A S + ++D++ E
Sbjct: 120 QADGGTRTAAITGSFVALALALNKLVEEGILPVIPLKDFVAAVSVGIVDGEEILDLNFEE 179
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQK--LHLDHLPRVLDCALKGCADI 222
++ ++ V + V V ++ ++ L R+L A KG ++
Sbjct: 180 DSKALVDMNVVMTGSNRFVEVQGTGEEATFSMEELQRLLTLAQKGIREL 228
>UNIPROTKB|P28619 [details] [associations]
symbol:rph "Ribonuclease PH" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0031125 "rRNA 3'-end
processing" evidence=IMP] InterPro:IPR002381 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0008033 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0000049 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0031125 EMBL:Z75208 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 EMBL:M85163 PIR:A44914 RefSeq:NP_390715.1
PDB:1OYP PDB:1OYR PDB:1OYS PDBsum:1OYP PDBsum:1OYR PDBsum:1OYS
ProteinModelPortal:P28619 SMR:P28619
EnsemblBacteria:EBBACT00000001457 GeneID:937463 KEGG:bsu:BSU28370
PATRIC:18977558 GenoList:BSU28370 BioCyc:BSUB:BSU28370-MONOMER
EvolutionaryTrace:P28619 Uniprot:P28619
Length = 245
Score = 147 (56.8 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 54/193 (27%), Positives = 96/193 (49%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R+DGR+ ELR I L S +GS I GNTKV+ A+V P ++ G
Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVP---PFLRGGGKG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMS--EVHPRSQIDIFVE-- 124
I +YSM +T +R R K S ++++++ + A+ + ++ + I+++
Sbjct: 58 WITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCD 117
Query: 125 VLQADGGNFCACVNAATLA-------LIDAGI----PMREYVVACSASLAGDTP-LVDIS 172
V+QADGG A + A LA LI AG P+ +++ A S + + L+D++
Sbjct: 118 VIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQGILLDLN 177
Query: 173 HLEETLGGPNLTV 185
+ E++ ++ V
Sbjct: 178 YEEDSSAEVDMNV 190
>POMBASE|SPBC115.01c [details] [associations]
symbol:rrp46 "exosome subunit Rrp46 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPBC115.01c Pfam:PF01138 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 KO:K12590 PIR:T39298 RefSeq:NP_595260.1
ProteinModelPortal:O42894 STRING:O42894 EnsemblFungi:SPBC115.01c.1
GeneID:2539660 KEGG:spo:SPBC115.01c OMA:YPRQLIQ OrthoDB:EOG4HDX3Z
NextBio:20800814 Uniprot:O42894
Length = 226
Score = 145 (56.1 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 54/198 (27%), Positives = 101/198 (51%)
Query: 27 RLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH-GSVLINFQYSMAVFSTGERK 85
R+G+ S+SDGS+ +QG+ +V+ V GP V+ + +++ +V + Q V T E+
Sbjct: 3 RIGILSRSDGSSEWKQGSARVICGVNGPIDVKIRDERLNKATVEVLVQPVSGVAETLEKM 62
Query: 86 TRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGN-FCACVNAATLAL 144
IS ++ + AI +PR+ I + +++++ DG + A +N A LAL
Sbjct: 63 -----------ISSRIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVLAL 111
Query: 145 IDAGIPMREYV---VAC--SASLAGDTPLVD--ISHLEETLGGPNLTVAALPLSGKVAVM 197
+DAGI ++ Y+ + C + D P VD I+ LE + ++++ P K+ +
Sbjct: 112 LDAGISLK-YIPCAINCHWKNKITQDEPDVDGTINKLESIIT-ICYSISSEP--AKLIFL 167
Query: 198 ELSQKLHLDHLPRVLDCA 215
E + + + RVL+ A
Sbjct: 168 ETAGPIPEEDFFRVLETA 185
>UNIPROTKB|Q2GJV5 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003729
GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS RefSeq:YP_505346.1
ProteinModelPortal:Q2GJV5 STRING:Q2GJV5 GeneID:3930955
KEGG:aph:APH_0767 PATRIC:20950226 HOGENOM:HOG000218326
ProtClustDB:PRK11824 BioCyc:APHA212042:GHPM-783-MONOMER
Uniprot:Q2GJV5
Length = 838
Score = 156 (60.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 65/231 (28%), Positives = 103/231 (44%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK-VHGSVLI 70
R DGR ++R I + + S++ GSA +G+T+ L P + + G
Sbjct: 323 RIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQDEQIVDGFDGDKRE 382
Query: 71 NF--QYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
F Y+ ++ GE RP G R+ L R A+ + S+ I + E+ +
Sbjct: 383 RFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWR-AIHPVLPSKADFPYTIRVVSEITE 441
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--GD--TPLVDISHLEETLGGPNL 183
+DG + A V A+LAL+D G+P++ V + L GD L DI E+ LG +
Sbjct: 442 SDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAILSDILGDEDYLGDMDF 501
Query: 184 TVAALPLSGKVAV-MELSQK-LHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
VA G A+ M++ K + L LD A +G I +D IK+
Sbjct: 502 KVAGTR-EGITALQMDMKVKGIDFAVLGTALDQAKEGRFFIIEKMDRVIKE 551
>TIGR_CMR|APH_0767 [details] [associations]
symbol:APH_0767 "polyribonucleotide
nucleotidyltransferase" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
GO:GO:0003729 GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS RefSeq:YP_505346.1
ProteinModelPortal:Q2GJV5 STRING:Q2GJV5 GeneID:3930955
KEGG:aph:APH_0767 PATRIC:20950226 HOGENOM:HOG000218326
ProtClustDB:PRK11824 BioCyc:APHA212042:GHPM-783-MONOMER
Uniprot:Q2GJV5
Length = 838
Score = 156 (60.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 65/231 (28%), Positives = 103/231 (44%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK-VHGSVLI 70
R DGR ++R I + + S++ GSA +G+T+ L P + + G
Sbjct: 323 RIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQDEQIVDGFDGDKRE 382
Query: 71 NF--QYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
F Y+ ++ GE RP G R+ L R A+ + S+ I + E+ +
Sbjct: 383 RFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWR-AIHPVLPSKADFPYTIRVVSEITE 441
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--GD--TPLVDISHLEETLGGPNL 183
+DG + A V A+LAL+D G+P++ V + L GD L DI E+ LG +
Sbjct: 442 SDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAILSDILGDEDYLGDMDF 501
Query: 184 TVAALPLSGKVAV-MELSQK-LHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
VA G A+ M++ K + L LD A +G I +D IK+
Sbjct: 502 KVAGTR-EGITALQMDMKVKGIDFAVLGTALDQAKEGRFFIIEKMDRVIKE 551
>TIGR_CMR|NSE_0057 [details] [associations]
symbol:NSE_0057 "polyribonucleotide
nucleotidyltransferase" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_505958.1
ProteinModelPortal:Q2GEY8 STRING:Q2GEY8 GeneID:3931805
KEGG:nse:NSE_0057 PATRIC:22680229 BioCyc:NSEN222891:GHFU-94-MONOMER
Uniprot:Q2GEY8
Length = 757
Score = 155 (59.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 68/237 (28%), Positives = 110/237 (46%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA-AVYGPRPVRNKSIKVHG-- 66
G+R DGR E+R I L + GSA +G T+ L A G + G
Sbjct: 316 GIRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGER 375
Query: 67 --SVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMS-EVHPRSQIDIF 122
SVL++ Y+ ++ GE R G R+ L L+ AV A + EV P + + +
Sbjct: 376 RESVLLH--YNFLPYAVGEVGALRAPGRREIGHGRLALK-AVKAVLPGKEVFPYT-LRLV 431
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETL 178
E+ ++DG + A V ++LAL+D G+P+ ++V + L D L DIS E+ L
Sbjct: 432 SEITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLITDGVRSAVLSDISGDEDML 491
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
G + VA +G VA +++ K+ + + D + A IL+ +H+I
Sbjct: 492 GDMDFKVAGTR-NGIVA-LQMDMKVRGISIATIRDALNQALAGRLHILEKM--EHVI 544
>TIGR_CMR|BA_4715 [details] [associations]
symbol:BA_4715 "ribonuclease PH" species:198094 "Bacillus
anthracis str. Ames" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549
RefSeq:NP_846927.1 RefSeq:YP_021364.1 RefSeq:YP_030624.1 PDB:3DD6
PDBsum:3DD6 ProteinModelPortal:Q81LA9 SMR:Q81LA9 IntAct:Q81LA9
DNASU:1088544 EnsemblBacteria:EBBACT00000011295
EnsemblBacteria:EBBACT00000015124 EnsemblBacteria:EBBACT00000023463
GeneID:1088544 GeneID:2815981 GeneID:2851699 KEGG:ban:BA_4715
KEGG:bar:GBAA_4715 KEGG:bat:BAS4377 HOGENOM:HOG000229516 KO:K00989
OMA:MLPRATG ProtClustDB:PRK00173
BioCyc:BANT260799:GJAJ-4434-MONOMER
BioCyc:BANT261594:GJ7F-4584-MONOMER EvolutionaryTrace:Q81LA9
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 Uniprot:Q81LA9
Length = 245
Score = 142 (55.0 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 53/205 (25%), Positives = 94/205 (45%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR ELR I +GS IE G+TKV+ + V ++ G +
Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVP-PFMRGEGKGWV 59
Query: 71 NFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+Y+M +T +R R K T EI + +A+ A + E + I +V+
Sbjct: 60 TAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVI 119
Query: 127 QADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLV-DISHL 174
QADGG A + A +A++ A IP+++Y+ A S + + +V D+++
Sbjct: 120 QADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYA 179
Query: 175 EETLGGPNLTVAALPLSGKVAVMEL 199
E++ ++ V ++GK +E+
Sbjct: 180 EDSKADVDMNVI---MTGKGQFVEV 201
>TIGR_CMR|CBU_0299 [details] [associations]
symbol:CBU_0299 "ribonuclease PH" species:227377 "Coxiella
burnetii RSA 493" [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0008033 "tRNA processing" evidence=ISS] InterPro:IPR002381
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549
HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG ProtClustDB:PRK00173
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 RefSeq:NP_819342.2
ProteinModelPortal:Q83EL9 SMR:Q83EL9 PRIDE:Q83EL9 GeneID:1208181
KEGG:cbu:CBU_0299 PATRIC:17929293
BioCyc:CBUR227377:GJ7S-306-MONOMER Uniprot:Q83EL9
Length = 237
Score = 141 (54.7 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 59/233 (25%), Positives = 105/233 (45%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL---AAVYG-PRPVRNKSIKVHG 66
+R R +ELR + ++GS + GNTKV+ + V G PR ++N G
Sbjct: 1 MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKNSE---QG 57
Query: 67 SVLINFQYSMAVFSTGERKTRP--RGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ +Y M ST R R RG + +T EI + +++ AA+ ++ I I
Sbjct: 58 --WLTAEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITID 115
Query: 123 VEVLQADGGNFCACVNAATLALIDA-------GI----PMREYVVACSASLAGDTPLVDI 171
+V+QADGG A +N + +A+I+A GI P++ V A S + P++D+
Sbjct: 116 CDVIQADGGTRTAAINGSCIAMIEALRHLQRKGILQTDPLKHKVAAVSVGIYKGVPVLDL 175
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADI 222
+ E++ ++ V + + ++ H L +++ A G I
Sbjct: 176 DYAEDSNAHTDMNVVMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQI 228
>TIGR_CMR|SO_4256 [details] [associations]
symbol:SO_4256 "ribonuclease PH" species:211586 "Shewanella
oneidensis MR-1" [GO:0004549 "tRNA-specific ribonuclease activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008033
GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:NP_719783.1 ProteinModelPortal:Q8E9L4
SMR:Q8E9L4 GeneID:1171859 KEGG:son:SO_4256 PATRIC:23528152
Uniprot:Q8E9L4
Length = 237
Score = 141 (54.7 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 52/199 (26%), Positives = 90/199 (45%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R R + R I + ++GS +E G TKVL V + +K G +
Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVP-RFLKGQGQGWV 59
Query: 71 NFQYSMAVFSTGERKTRP--RGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+Y M ST R R RG + +T EI + +A+ A + + + I I +V+
Sbjct: 60 TAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVI 119
Query: 127 QADGGNFCACVNAATLALIDA-------GI----PMREYVVACSASLAGDTPLVDISHLE 175
QADGG A + A +AL+DA GI P++ + A S + + D+ ++E
Sbjct: 120 QADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYVE 179
Query: 176 ETLGGPNLTVAALPLSGKV 194
++ ++ V + +GK+
Sbjct: 180 DSAAETDMNVV-MTETGKI 197
>TIGR_CMR|SPO_0008 [details] [associations]
symbol:SPO_0008 "ribonuclease PH" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0004549 "tRNA-specific ribonuclease activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008033
GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:YP_165281.1 HSSP:P28619
ProteinModelPortal:Q5LWF6 SMR:Q5LWF6 GeneID:3193125
KEGG:sil:SPO0008 PATRIC:23373245 Uniprot:Q5LWF6
Length = 237
Score = 141 (54.7 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 60/232 (25%), Positives = 101/232 (43%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R GR E+R + G ++GS I+ G+T VL V IK G +
Sbjct: 1 MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVP-PFIKGSGLGWV 59
Query: 71 NFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+Y M +T R R K T EI + +A+ A + QI + +V+
Sbjct: 60 TAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVI 119
Query: 127 QADGGNFCACVNAATLAL-------IDAGI----PMREYVVACSASLAGDTPLVDISHLE 175
QADGG CA + +AL + AG P+ + V A S + P++D+ + E
Sbjct: 120 QADGGTRCASITGGWVALRLAVNKLMKAGDVISDPLVDPVAAVSCGIYAGQPVLDLDYPE 179
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKGCADIHA 224
++ G + + SGK+ +++S + + L ++L A KG ++ A
Sbjct: 180 DSEAGVDGNFI-MTGSGKLIEVQMSAEGSVFNRAQLDQLLGLAEKGVGELVA 230
>TAIR|locus:2222662 [details] [associations]
symbol:AT5G14580 "AT5G14580" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0000957 "mitochondrial RNA catabolic process"
evidence=IGI] [GO:0000963 "mitochondrial RNA processing"
evidence=IGI] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IGI] [GO:0042991
"transcription factor import into nucleus" evidence=RCA]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00575 Pfam:PF03726
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005739 EMBL:CP002688
GO:GO:0006397 GO:GO:0003723 GO:GO:0008033 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0000963
GO:GO:0000175 InterPro:IPR022967 SMART:SM00316 EMBL:AL163792
HSSP:P05055 GO:GO:0000957 Pfam:PF03725 SUPFAM:SSF55666
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 EMBL:Y14685
EMBL:Y14686 IPI:IPI00534639 PIR:T48631 RefSeq:NP_196962.1
UniGene:At.427 ProteinModelPortal:Q9S7G6 SMR:Q9S7G6 STRING:Q9S7G6
PRIDE:Q9S7G6 EnsemblPlants:AT5G14580.1 GeneID:831309
KEGG:ath:AT5G14580 GeneFarm:4118 TAIR:At5g14580 InParanoid:Q9S7G6
OMA:RDKTLMI PhylomeDB:Q9S7G6 ProtClustDB:CLSN2687232
Genevestigator:Q9S7G6 Uniprot:Q9S7G6
Length = 991
Score = 151 (58.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 59/192 (30%), Positives = 84/192 (43%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI-KVHGSV 68
G R DGR E+R I C GSA +G+T+VL V P +S+ + G
Sbjct: 362 GFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGPP 421
Query: 69 LINFQ--YSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIM-SEVHPRSQIDIFVEV 125
F YS + T E R +R+ +A+ A + E P + I I EV
Sbjct: 422 KKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYT-IRINSEV 480
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT-P----------LVDISHL 174
+ +DG A V ++AL+DAGIP+R +V S L D P + DI L
Sbjct: 481 MSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIVTDILGL 540
Query: 175 EETLGGPNLTVA 186
E+ LG + +A
Sbjct: 541 EDHLGDMDFKIA 552
>TIGR_CMR|DET_0970 [details] [associations]
symbol:DET_0970 "polyribonucleotide
nucleotidyltransferase" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
HSSP:Q91WJ8 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_181693.1 ProteinModelPortal:Q3Z7V6
SMR:Q3Z7V6 STRING:Q3Z7V6 GeneID:3229678 KEGG:det:DET0970
PATRIC:21608989 BioCyc:DETH243164:GJNF-971-MONOMER Uniprot:Q3Z7V6
Length = 720
Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 58/233 (24%), Positives = 107/233 (45%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA-AVYGPRPVRNK--SIKVHGS 67
+R +GR +LR++ G+ + GSA +G+T+V+A G + + +
Sbjct: 311 IRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAITTLGSLQEAQQLDGLSAEDT 370
Query: 68 VLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
Y+ A FSTGE +++ G R+ +L R V E P + I + +V+
Sbjct: 371 KRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEEFPYT-IRMVADVV 429
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLA---GDT--PLVDISHLEETLGGP 181
+ G V +++L+L+DAG+P+++ V S L DT + DI +E+ G
Sbjct: 430 GSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTITDIEGIEDNYGDM 489
Query: 182 NLTVAALPLSGKVAV-MELSQK-LHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ VA G A+ +++ K + D + + A + I ++D A+ Q
Sbjct: 490 DFKVAGTR-DGITAIQVDMKVKGISFDVIRDAIYQAKEARYTILEVMDKALAQ 541
>TIGR_CMR|SO_1209 [details] [associations]
symbol:SO_1209 "polyribonucleotide nucleotidyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_716833.2
ProteinModelPortal:Q8EHL1 SMR:Q8EHL1 GeneID:1169037
KEGG:son:SO_1209 PATRIC:23522076 Uniprot:Q8EHL1
Length = 699
Score = 144 (55.7 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 65/237 (27%), Positives = 108/237 (45%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA-VYGPRPVRNKSIKVHGSVLI 70
R DGR +R + GV ++ GSA +G T+ L G K + G
Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 71 NFQ--YSMAVFSTGERKTRPRGDRKTSEISL-QLR-QAVSAAIMS-EVHPRSQIDIFVEV 125
F Y+ +S GE T G K EI +L + ++A + S E P S + + E+
Sbjct: 374 RFMLHYNFPPYSVGE--TGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYS-VRVVSEI 430
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--GDTPLV--DISHLEETLGGP 181
+++G + A V +LAL+DAG+P++ V + L GD +V DI E+ LG
Sbjct: 431 TESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDHLGDM 490
Query: 182 NLTVAALPLSGKVAVMELSQKLHLDHLPR-VLDCALKGC--ADIHA--ILDTAIKQH 233
+ VA + V L + ++ + + +++ AL+ A +H ++D AI H
Sbjct: 491 DFKVAGT----RDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543
>TIGR_CMR|DET_1289 [details] [associations]
symbol:DET_1289 "ribonuclease PH" species:243164
"Dehalococcoides ethenogenes 195" [GO:0008033 "tRNA processing"
evidence=ISS] [GO:0009022 "tRNA nucleotidyltransferase activity"
evidence=ISS] InterPro:IPR002381 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 HSSP:O29756
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:YP_182001.1 ProteinModelPortal:Q3Z6Z8
STRING:Q3Z6Z8 GeneID:3229379 KEGG:det:DET1289 PATRIC:21609609
BioCyc:DETH243164:GJNF-1290-MONOMER Uniprot:Q3Z6Z8
Length = 239
Score = 134 (52.2 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 55/181 (30%), Positives = 85/181 (46%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR ++LR I G S ++GS IEQG T+V+ +V V + ++ G+ +
Sbjct: 3 RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDKVP-QFLRNSGTGWVT 61
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVH-----PRSQIDIFVEVL 126
+YSM ST R R K S S ++++ + ++ S V RS I I +V+
Sbjct: 62 AEYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLAALGERSFI-IDCDVI 120
Query: 127 QADGGNFCACVNAATLAL-------IDAGI----PMREYVVACSASLAGDTPLVDISHLE 175
QAD G A + A +AL +D GI P V A S S+ ++D + E
Sbjct: 121 QADAGTRTASITGAYIALYLAFKKMVDMGILSKMPFTSQVAAVSVSIFKGNIVLDPCYDE 180
Query: 176 E 176
+
Sbjct: 181 D 181
>TIGR_CMR|SPO_3389 [details] [associations]
symbol:SPO_3389 "polyribonucleotide
nucleotidyltransferase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_168585.1
ProteinModelPortal:Q5LN23 GeneID:3195958 KEGG:sil:SPO3389
PATRIC:23380231 Uniprot:Q5LN23
Length = 714
Score = 142 (55.0 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 60/223 (26%), Positives = 100/223 (44%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTK-VLAAVYGPRPVRNKSIKVHGS 67
GG R DGR +R I G+ ++ GSA +G T+ ++ G +HG+
Sbjct: 315 GGKRIDGRDTTTVRPIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGN 374
Query: 68 VLINF--QYSMAVFSTGE--RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
NF Y+ +S GE R P G R+ L R A+ A + + I +
Sbjct: 375 FKSNFLLHYNFPPYSVGEVGRVGSP-GRREIGHGKLAWR-ALQAVLPAPTDFPYTIRVVS 432
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYV--VACSASLAGD---TPLVDISHLEETL 178
E+ +++G + A V +L+++DAG+P++ V VA L D L DI E+ L
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGSYAVLTDILGDEDHL 492
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCAD 221
G + VA +G + +++ K+ P +++ AL D
Sbjct: 493 GDMDFKVAGTE-NG-ITSLQMDIKV-AGITPEIMEKALSQAKD 532
>TIGR_CMR|ECH_0726 [details] [associations]
symbol:ECH_0726 "polyribonucleotide
nucleotidyltransferase" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_507529.1
ProteinModelPortal:Q2GGA4 STRING:Q2GGA4 GeneID:3927271
KEGG:ech:ECH_0726 PATRIC:20576896
BioCyc:ECHA205920:GJNR-729-MONOMER Uniprot:Q2GGA4
Length = 796
Score = 142 (55.0 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 60/232 (25%), Positives = 102/232 (43%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK-VHGSVLI 70
R DGR E+R I + V ++ GSA +GNT+ L P + + + G
Sbjct: 319 RIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 378
Query: 71 NF--QYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
NF Y+ ++ GE R G R+ L R A+ + + I + E+ +
Sbjct: 379 NFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWR-AIRYVLPEKSDFPYTIRVVSEITE 437
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP----LVDISHLEETLGGPNL 183
+DG + A V A+LAL+D G+P++ V + L + L DI E+ LG +
Sbjct: 438 SDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEDDRFIILSDILGDEDHLGDMDF 497
Query: 184 TVAALPLSGKVAVMELSQKLH---LDHLPRVLDCALKGCADIHAILDTAIKQ 232
VA G V +++ K+ +D + + L A G I + ++ I++
Sbjct: 498 KVAGTA-EG-VTALQMDMKISGIDIDIIEKALLQAKDGRMHILSKMNAVIQE 547
>UNIPROTKB|G4MSP2 [details] [associations]
symbol:MGG_07084 "3' exoribonuclease" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:CM001232 KO:K12587 RefSeq:XP_003715270.1
ProteinModelPortal:G4MSP2 EnsemblFungi:MGG_07084T0 GeneID:2682969
KEGG:mgr:MGG_07084 Uniprot:G4MSP2
Length = 302
Score = 120 (47.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 37/135 (27%), Positives = 67/135 (49%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIE---------QGNT-----KVLAAVYGPR 55
G R R + +RKI + G+ + GSAY+E +G T K+ V+GPR
Sbjct: 29 GPRTRSRPPNAIRKIFLKTGITPSASGSAYLEIENPVVSGKEGETSTSGLKLSCTVHGPR 88
Query: 56 PV-RNKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVH 114
+ R+ H ++++ A F+T +R+ R D ++S+ L A+ I+++
Sbjct: 89 ALPRSTPFSPH--IILSTHIKYAPFATKQRRGYIR-DSTERDLSVHLETALRGVIIADRW 145
Query: 115 PRSQIDIFVEVLQAD 129
P+S +D+ V V++ D
Sbjct: 146 PKSGVDVIVSVIEGD 160
Score = 51 (23.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 136 CVNAATLALIDAGIPMREYVVACSASLAGD 165
C+ A+ AL DAGI + V A+L D
Sbjct: 186 CITVASAALADAGIDCVDMVAGGVAALVRD 215
>UNIPROTKB|P05055 [details] [associations]
symbol:pnp "polynucleotide phosphorylase monomer"
species:83333 "Escherichia coli K-12" [GO:0006402 "mRNA catabolic
process" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0035438 "cyclic-di-GMP binding" evidence=IDA] [GO:0042802
"identical protein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016020 "membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA;IDA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=IEA;IDA] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005829 GO:GO:0006950 GO:GO:0016020 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666 EMBL:J02638
eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS BRENDA:2.7.7.8 ProtClustDB:PRK11824
EMBL:X00761 EMBL:M14425 PIR:H65106 RefSeq:NP_417633.4
RefSeq:YP_491351.1 PDB:1SRO PDB:3CDI PDB:3CDJ PDB:3H1C PDBsum:1SRO
PDBsum:3CDI PDBsum:3CDJ PDBsum:3H1C ProteinModelPortal:P05055
SMR:P05055 DIP:DIP-10522N IntAct:P05055 MINT:MINT-244786
PhosSite:P0810422 SWISS-2DPAGE:P05055 PaxDb:P05055 PRIDE:P05055
EnsemblBacteria:EBESCT00000001884 EnsemblBacteria:EBESCT00000002008
EnsemblBacteria:EBESCT00000002009 EnsemblBacteria:EBESCT00000002010
EnsemblBacteria:EBESCT00000015515 GeneID:12933437 GeneID:947672
KEGG:ecj:Y75_p3086 KEGG:eco:b3164 PATRIC:32121746 EchoBASE:EB0736
EcoGene:EG10743 BioCyc:EcoCyc:EG10743-MONOMER
BioCyc:ECOL316407:JW5851-MONOMER BioCyc:MetaCyc:EG10743-MONOMER
EvolutionaryTrace:P05055 Genevestigator:P05055 Uniprot:P05055
Length = 711
Score = 139 (54.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 65/238 (27%), Positives = 111/238 (46%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA-AVYGPRPVRNKSIKVHG- 66
G R DGR +R + R GV ++ GSA +G T+ L A G ++ G
Sbjct: 312 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGE 371
Query: 67 -SVLINFQYSMAVFSTGERKTRPRGDRKTSEISL-QLRQAVSAAIMSEVH--PRSQIDIF 122
+ F Y+ +S GE T G K EI +L + A+M ++ P + + +
Sbjct: 372 RTDTFLFHYNFPPYSVGE--TGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVV 428
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--GDTPLV--DISHLEETL 178
E+ +++G + A V A+LAL+DAG+P++ V + L GD +V DI E+ L
Sbjct: 429 SEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHL 488
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPR-VLDCAL---KGCADIH--AILDTAI 230
G + VA + + L + ++ + + ++ AL KG A +H +++ AI
Sbjct: 489 GDMDFKVAG----SRDGISALQMDIKIEGITKEIMQVALNQAKG-ARLHILGVMEQAI 541
>WB|WBGene00000798 [details] [associations]
symbol:crn-5 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0006309 "apoptotic DNA fragmentation"
evidence=IMP] [GO:0006396 "RNA processing" evidence=IMP]
[GO:0000178 "exosome (RNase complex)" evidence=IMP] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0032077 "positive regulation of
deoxyribonuclease activity" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0008340 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0006396 GO:GO:0003690
GO:GO:0000178 GO:GO:0006309 GO:GO:0008408 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:Z49909 SUPFAM:SSF55666 KO:K12590
GeneTree:ENSGT00550000075002 GO:GO:0032077 EMBL:AY303579 PIR:T19247
RefSeq:NP_496284.1 UniGene:Cel.23323 ProteinModelPortal:G5EG59
SMR:G5EG59 IntAct:G5EG59 EnsemblMetazoa:C14A4.5 GeneID:174634
KEGG:cel:CELE_C14A4.5 CTD:174634 WormBase:C14A4.5 OMA:CGDNKFN
EvolutionaryTrace:G5EG59 NextBio:884842 Uniprot:G5EG59
Length = 214
Score = 129 (50.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 43/158 (27%), Positives = 70/158 (44%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFS 80
LR++RC L +DGSA QG T + A+ GP V + S ++ ++ Y
Sbjct: 5 LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDV-HASKASDEAMTLDISYRANC-- 61
Query: 81 TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAA 140
GD K + ++ + +S AI E+ P + I + V +Q DG +N A
Sbjct: 62 ---------GDNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGA 112
Query: 141 TLALIDAGIPMREYVVACSASLAG--DTPLVDISHLEE 176
AL+D G+P V C + D ++D + +E
Sbjct: 113 CFALLDNGMPFE--TVFCGVLIVRVKDELIIDPTAKQE 148
>UNIPROTKB|Q9KU76 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR009019 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 137 (53.3 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 68/239 (28%), Positives = 113/239 (47%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA-AVYGPRPVRNKSI--KVH 65
G R DGR +R + R GV ++ GSA +G T+ L A G + R+ I ++
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ--RDAQIIDELT 370
Query: 66 GSVLINF--QYSMAVFSTGERKTRPRGDRKTSEISL-QLRQAVSAAIMS--EVHPRSQID 120
G +F Y+ + GE T G K EI +L + AA+M E P + +
Sbjct: 371 GEKKDHFLLHYNFPPYCVGE--TGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYT-VR 427
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEE 176
+ E+ +++G + A V ++LAL+DAG+P++ V + L + L DI E+
Sbjct: 428 VVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSDILGDED 487
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCAL---KGCADIH--AILDTAI 230
LG + VA +G V +++ K+ ++ AL KG A +H +++D AI
Sbjct: 488 HLGDMDFKVAGTA-TG-VTALQMDIKIE-GITKEIMQIALNQAKG-ARLHILSVMDQAI 542
>TIGR_CMR|VC_0647 [details] [associations]
symbol:VC_0647 "polyribonucleotide nucleotidyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 137 (53.3 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 68/239 (28%), Positives = 113/239 (47%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA-AVYGPRPVRNKSI--KVH 65
G R DGR +R + R GV ++ GSA +G T+ L A G + R+ I ++
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ--RDAQIIDELT 370
Query: 66 GSVLINF--QYSMAVFSTGERKTRPRGDRKTSEISL-QLRQAVSAAIMS--EVHPRSQID 120
G +F Y+ + GE T G K EI +L + AA+M E P + +
Sbjct: 371 GEKKDHFLLHYNFPPYCVGE--TGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYT-VR 427
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEE 176
+ E+ +++G + A V ++LAL+DAG+P++ V + L + L DI E+
Sbjct: 428 VVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSDILGDED 487
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCAL---KGCADIH--AILDTAI 230
LG + VA +G V +++ K+ ++ AL KG A +H +++D AI
Sbjct: 488 HLGDMDFKVAGTA-TG-VTALQMDIKIE-GITKEIMQIALNQAKG-ARLHILSVMDQAI 542
>TAIR|locus:2079429 [details] [associations]
symbol:RIF10 "AT3G03710" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=IGI]
[GO:0006401 "RNA catabolic process" evidence=IGI] [GO:0031425
"chloroplast RNA processing" evidence=IGI] [GO:0009507
"chloroplast" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0010323 "negative regulation of isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=IMP] [GO:0015995 "chlorophyll biosynthetic process"
evidence=IMP] [GO:0016120 "carotene biosynthetic process"
evidence=IMP] [GO:0016123 "xanthophyll biosynthetic process"
evidence=IMP] [GO:0016036 "cellular response to phosphate
starvation" evidence=IMP] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0009570 EMBL:CP002686 GO:GO:0006397
GO:GO:0003723 GO:GO:0006401 GO:GO:0008033 GO:GO:0006402
GO:GO:0016036 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC009540 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC009327
GO:GO:0016123 GO:GO:0006364 GO:GO:0015995 GO:GO:0000175
GO:GO:0016120 InterPro:IPR022967 SMART:SM00316 Pfam:PF03725
SUPFAM:SSF55666 EMBL:AJ252123 EMBL:AF450480 IPI:IPI00534675
RefSeq:NP_187021.2 UniGene:At.26536 HSSP:Q53597
ProteinModelPortal:Q8GZQ3 SMR:Q8GZQ3 STRING:Q8GZQ3 PRIDE:Q8GZQ3
EnsemblPlants:AT3G03710.1 GeneID:821181 KEGG:ath:AT3G03710
GeneFarm:4127 TAIR:At3g03710 HOGENOM:HOG000218327 InParanoid:Q8GZQ3
KO:K00962 OMA:AQRIDNL PhylomeDB:Q8GZQ3 ProtClustDB:PLN00207
ArrayExpress:Q8GZQ3 Genevestigator:Q8GZQ3 GO:GO:0004654
GO:GO:0031425 GO:GO:0010323 Gene3D:1.10.10.400 PANTHER:PTHR11252
SUPFAM:SSF46915 TIGRFAMs:TIGR03591 Uniprot:Q8GZQ3
Length = 922
Score = 138 (53.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 52/192 (27%), Positives = 84/192 (43%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV-YGPRPVRNKSIKVHGS 67
GG R+DGR E+R I R G+ ++ GS +G T+ LA V G + + + + GS
Sbjct: 444 GGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGS 503
Query: 68 ---VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
QY+ S GE R+ +A+ + S+ I +
Sbjct: 504 DEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVEST 563
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT--------PLV--DISHL 174
V++++G + A V LAL DAG+P++ V + + DT PL+ DI+
Sbjct: 564 VIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITGA 623
Query: 175 EETLGGPNLTVA 186
E+ G + VA
Sbjct: 624 EDASGDMDFKVA 635
>TIGR_CMR|GSU_1593 [details] [associations]
symbol:GSU_1593 "polyribonucleotide
nucleotidyltransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
ProtClustDB:PRK11824 RefSeq:NP_952644.4 ProteinModelPortal:Q74CS9
GeneID:2687125 KEGG:gsu:GSU1593 PATRIC:22026031
BioCyc:GSUL243231:GH27-1537-MONOMER Uniprot:Q74CS9
Length = 697
Score = 135 (52.6 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 52/195 (26%), Positives = 86/195 (44%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSV 68
G R DGR +R I + + ++ GSA +G T+ L A+ G + ++G
Sbjct: 311 GYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGET 370
Query: 69 LINF--QYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMS-EVHPRSQIDIFVEV 125
F Y+ FS GE R R+ + +A+ + E P + I I ++
Sbjct: 371 RKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPYT-IRIVSDI 429
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA----GDTPLVDISHLEETLGGP 181
L+++G + A V LA++DAG+P++ V + L G L DI E+ LG
Sbjct: 430 LESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKEGEGIAILSDILGDEDHLGDM 489
Query: 182 NLTVAALPLSGKVAV 196
+ VA +G A+
Sbjct: 490 DFKVAGTE-AGVTAI 503
>TIGR_CMR|CPS_2207 [details] [associations]
symbol:CPS_2207 "polyribonucleotide
nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
Length = 705
Score = 134 (52.2 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 62/238 (26%), Positives = 107/238 (44%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA-AVYGPRPVRNKSIKVHGS 67
G R DGR +R + GV ++ GSA +G T+ L A G + + + G
Sbjct: 312 GNPRIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTATLGTQRDAQRLDTLMGD 371
Query: 68 VLINFQ--YSMAVFSTGERKTRPRGDRKTSEISL-QLRQAVSAAIMS--EVHPRSQIDIF 122
F Y+ + GE T G K EI +L + A+M E P + + +
Sbjct: 372 KTDPFMLHYNFPPYCVGE--TGFVGSPKRREIGHGRLAKRGMLAVMPSLEEFPYA-VRVV 428
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--GDTPLV--DISHLEETL 178
E+ +++G + A V +LAL+DAG+P++ V + L G+ +V DI E+ L
Sbjct: 429 SEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGEKFVVLSDILGDEDHL 488
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLH--LDHLPRV-LDCALKGCADIHAILDTAIKQH 233
G + VA +G + +++ K+ + ++ L+ A I +++D AI H
Sbjct: 489 GDMDFKVAGT--TGGITALQMDIKIEGITQEIMQIALNQAKAARTHILSVMDEAIGGH 544
>FB|FBgn0039846 [details] [associations]
symbol:CG11337 species:7227 "Drosophila melanogaster"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
FlyBase:FBgn0039846 EMBL:BT015961 ProteinModelPortal:Q5U1D1
SMR:Q5U1D1 STRING:Q5U1D1 PRIDE:Q5U1D1 InParanoid:Q5U1D1
ArrayExpress:Q5U1D1 Bgee:Q5U1D1 Uniprot:Q5U1D1
Length = 771
Score = 134 (52.2 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 48/176 (27%), Positives = 82/176 (46%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVY---GPRPVRNKSIKV-- 64
GLR DGR +LR I C++ ++ GSA ++G T+V V ++ S+
Sbjct: 353 GLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALD 412
Query: 65 HGSVLI-NFQ--YSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
G + NF Y ++TGE + P G R+ +L R + + +P + +
Sbjct: 413 SGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERSLLPT--LPNDYPFT-VR 469
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEE 176
+ EVL+++G + A V +LAL+DAG+P+ + L D HL++
Sbjct: 470 LTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQD 525
>UNIPROTKB|Q3IJ73 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
KEGG:pha:PSHAa1001 PATRIC:32295529
BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
Length = 708
Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 64/236 (27%), Positives = 105/236 (44%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA-AVYGPRPVRNKSIKVHGS 67
G R DGR +R + GV ++ GSA +G T+ L A G + G+
Sbjct: 314 GEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGT 373
Query: 68 VLINFQ--YSMAVFSTGERKTRPRGDRKTSEISL-QLRQAVSAAIMSEV--HPRSQIDIF 122
+F Y+ F GE T G K EI L + AA+M + P S I +
Sbjct: 374 HKNHFMLNYNFPPFCVGE--TGFVGSPKRREIGHGNLAKRGIAAVMPTLTEFPYS-IRVV 430
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG-DTPLVDISHL---EETL 178
E+ +++G + A V +LAL++AG+P++ V + L D V +S + E+ L
Sbjct: 431 SEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVLSDILGDEDHL 490
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGC--ADIHA--ILDTAI 230
G + VA +G + +++ K+ ++ ALK A +H ++D AI
Sbjct: 491 GDMDFKVAGT--AGGITALQMDIKIE-GITQEIMQIALKQAKAARLHILEVMDKAI 543
>TIGR_CMR|CBU_0852 [details] [associations]
symbol:CBU_0852 "polyribonucleotide
nucleotidyltransferase" species:227377 "Coxiella burnetii RSA 493"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_819872.1
ProteinModelPortal:Q83D87 SMR:Q83D87 PRIDE:Q83D87 GeneID:1208745
KEGG:cbu:CBU_0852 PATRIC:17930401
BioCyc:CBUR227377:GJ7S-847-MONOMER Uniprot:Q83D87
Length = 696
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 61/234 (26%), Positives = 100/234 (42%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV-YGPRPVRNKSIKVHGS 67
G R DGR +R I ++GV +S GSA +G T+ L G + G
Sbjct: 315 GQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGD 374
Query: 68 VLINF--QYSMAVFSTGER--KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
F Y+ F GE + P+ R+ L R V + P I +
Sbjct: 375 RQEEFIFHYNFPPFCVGEVGFMSGPKR-REIGHGRLAKRAVVPVVPTLDKFPYV-IRVVS 432
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP----LVDISHLEETLG 179
E+L+++G + A V ++LAL+DAG+P + V + L + L DI E+ LG
Sbjct: 433 EILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAVLSDILGDEDHLG 492
Query: 180 GPNLTVAALPLSGKVAVMELSQKLH---LDHLPRVLDCALKGCADIHAILDTAI 230
+ VA S V +++ K+ + + + LD A +G I +I++ +
Sbjct: 493 DMDFKVAGT--SNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMNKVL 544
>SGD|S000003327 [details] [associations]
symbol:RRP46 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0000177 "cytoplasmic exosome
(RNase complex)" evidence=IDA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IDA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay" evidence=IC]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IC] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0070481 "nuclear-transcribed
mRNA catabolic process, non-stop decay" evidence=IC] [GO:0043628
"ncRNA 3'-end processing" evidence=IC] [GO:0034427
"nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'"
evidence=IC] InterPro:IPR001247 SGD:S000003327 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000176 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 GO:GO:0071051
eggNOG:COG0689 Pfam:PF03725 SUPFAM:SSF55666 KO:K12590
GeneTree:ENSGT00550000075002 OMA:YPRQLIQ OrthoDB:EOG4HDX3Z
EMBL:Z72880 EMBL:AY389297 PIR:S64390 RefSeq:NP_011609.2
ProteinModelPortal:P53256 SMR:P53256 DIP:DIP-6838N IntAct:P53256
MINT:MINT-614217 STRING:P53256 PaxDb:P53256 PeptideAtlas:P53256
EnsemblFungi:YGR095C GeneID:852987 KEGG:sce:YGR095C CYGD:YGR095c
HOGENOM:HOG000248419 NextBio:972806 Genevestigator:P53256
GermOnline:YGR095C Uniprot:P53256
Length = 223
Score = 116 (45.9 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 50/215 (23%), Positives = 94/215 (43%)
Query: 24 IRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGSVLINFQYSMAVFSTG 82
++ +G+ DGS+ +TKV+ +V GP P + + ++ I + + V +T
Sbjct: 3 VQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTR 62
Query: 83 ERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA--DGGNFC-----A 135
E+ + LR ++ I +PR I ++L++ D F
Sbjct: 63 EKVLEDK-----------LRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSC 111
Query: 136 CVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLS---- 191
C+NAA LAL+DAGI + + ++ DT + + E L +L+V L L
Sbjct: 112 CINAAFLALVDAGIALNSMCASIPIAIIKDTSDIIVDPTAEQLK-ISLSVHTLALEFVNG 170
Query: 192 GKVA----VMELSQKLHLDHLPRVLDCALKGCADI 222
GKV +++ + + D L +L+ + C ++
Sbjct: 171 GKVVKNVLLLDSNGDFNEDQLFSLLELGEQKCQEL 205
>UNIPROTKB|F1NU18 [details] [associations]
symbol:PNPT1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0000958 "mitochondrial mRNA catabolic process" evidence=IEA]
[GO:0000962 "positive regulation of mitochondrial RNA catabolic
process" evidence=IEA] [GO:0000964 "mitochondrial RNA 5'-end
processing" evidence=IEA] [GO:0000965 "mitochondrial RNA 3'-end
processing" evidence=IEA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IEA] [GO:0005758
"mitochondrial intermembrane space" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
[GO:0034599 "cellular response to oxidative stress" evidence=IEA]
[GO:0035198 "miRNA binding" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0035928 "rRNA import
into mitochondrion" evidence=IEA] [GO:0043457 "regulation of
cellular respiration" evidence=IEA] [GO:0045025 "mitochondrial
degradosome" evidence=IEA] [GO:0045926 "negative regulation of
growth" evidence=IEA] [GO:0061014 "positive regulation of mRNA
catabolic process" evidence=IEA] [GO:0070207 "protein
homotrimerization" evidence=IEA] [GO:0070584 "mitochondrion
morphogenesis" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071850 "mitotic cell cycle arrest" evidence=IEA] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=IEA] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=IEA]
[GO:2000772 "regulation of cellular senescence" evidence=IEA]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
GO:GO:0034599 GO:GO:0006378 GO:GO:0045926 GO:GO:0035198
GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046
GO:GO:0000958 GO:GO:0071850 GO:GO:0000175 GO:GO:0043457
GO:GO:0071042 InterPro:IPR022967 SMART:SM00316 GO:GO:0045025
Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS GO:GO:0000965 GO:GO:0000964
GO:GO:2000627 GO:GO:0000962 GO:GO:0035928
GeneTree:ENSGT00390000014001 EMBL:AADN02046838 IPI:IPI00587631
Ensembl:ENSGALT00000012892 Uniprot:F1NU18
Length = 714
Score = 124 (48.7 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 49/168 (29%), Positives = 75/168 (44%)
Query: 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR---PVRN 59
+L EY R DGR LR I+C + +F GSA ++G T+VL V V++
Sbjct: 282 ILNEYR---RCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKS 338
Query: 60 KSIK--VHGSVLINFQ--YSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVH 114
I V G NF Y ++T E K R+ +A+ I +
Sbjct: 339 DLISTAVSGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHAGALAERALKPVIPQDF- 397
Query: 115 PRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASL 162
P + I + EVL+++G + A +LAL+DAG+P+ V + L
Sbjct: 398 PFT-IRVTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGL 444
>UNIPROTKB|O33325 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR014069 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005829 GO:GO:0005886 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842580
GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 PIR:F70883 RefSeq:NP_217299.1
RefSeq:NP_337358.1 RefSeq:YP_006516229.1 ProteinModelPortal:O33325
SMR:O33325 PRIDE:O33325 EnsemblBacteria:EBMYCT00000001176
EnsemblBacteria:EBMYCT00000071784 GeneID:13317568 GeneID:888467
GeneID:925429 KEGG:mtc:MT2853 KEGG:mtu:Rv2783c KEGG:mtv:RVBD_2783c
PATRIC:18128028 TubercuList:Rv2783c TIGRFAMs:TIGR02696
Uniprot:O33325
Length = 752
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 50/169 (29%), Positives = 75/169 (44%)
Query: 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI 62
+LT++ R DGR ++R + + V ++ GSA E+G T++L + I
Sbjct: 340 ILTDH---FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMIKMAQQI 396
Query: 63 KVHG---SVLINFQYSMAVFSTGERKTRPRGDRKTSEI---SLQLRQAVSAAIMSEVHPR 116
G S Y+ FSTGE T G K EI +L R V E P
Sbjct: 397 DSLGPETSKRYMHHYNFPPFSTGE--TGRVGSPKRREIGHGALAERALVPVLPSVEEFPY 454
Query: 117 SQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD 165
+ I E L ++G V A+TLAL++AG+P++ V + L D
Sbjct: 455 A-IRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSD 502
>TIGR_CMR|CJE_1390 [details] [associations]
symbol:CJE_1390 "polyribonucleotide
nucleotidyltransferase" species:195099 "Campylobacter jejuni
RM1221" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:Q9UXC2 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_179377.1 ProteinModelPortal:Q5HTK8
STRING:Q5HTK8 GeneID:3231896 KEGG:cjr:CJE1390 PATRIC:20044580
BioCyc:CJEJ195099:GJC0-1417-MONOMER Uniprot:Q5HTK8
Length = 719
Score = 120 (47.3 bits), Expect = 0.00024, P = 0.00024
Identities = 63/239 (26%), Positives = 107/239 (44%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTK--VLAAVYGPRPVRNKSIKVHGS 67
G R DGR +E+R I + + GS +G T+ V+A + G + + +
Sbjct: 334 GKRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKN 393
Query: 68 VLIN-FQ--YSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+ F Y+ FS GE + G R+ +L R A+ ++ E +P I +
Sbjct: 394 PISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKR-ALYPSV-DENYPYV-IRLVS 450
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLG 179
E+L+++G + A V +LAL AG+P + V + L + L DI LE+ G
Sbjct: 451 EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDG 510
Query: 180 GPNLTVAALPLSGKVAVMELSQKLH-LDH--LPRVLDCALKGCADIHAILDTAIKQHLI 235
+ VA G V +++ KL +D L + L A +G I I++ A K+ ++
Sbjct: 511 DMDFKVAGSK-DG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIMEEAAKEIIV 567
>RGD|1307987 [details] [associations]
symbol:Pnpt1 "polyribonucleotide nucleotidyltransferase 1"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000957
"mitochondrial RNA catabolic process" evidence=ISO] [GO:0000958
"mitochondrial mRNA catabolic process" evidence=ISO] [GO:0000962
"positive regulation of mitochondrial RNA catabolic process"
evidence=ISO] [GO:0000964 "mitochondrial RNA 5'-end processing"
evidence=ISO] [GO:0000965 "mitochondrial RNA 3'-end processing"
evidence=ISO] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005758 "mitochondrial intermembrane space" evidence=ISO]
[GO:0005886 "plasma membrane" evidence=ISO] [GO:0006401 "RNA
catabolic process" evidence=ISO] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008266 "poly(U) RNA binding"
evidence=ISO] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
[GO:0034599 "cellular response to oxidative stress" evidence=ISO]
[GO:0035198 "miRNA binding" evidence=ISO] [GO:0035458 "cellular
response to interferon-beta" evidence=ISO] [GO:0035927 "RNA import
into mitochondrion" evidence=ISO] [GO:0035928 "rRNA import into
mitochondrion" evidence=ISO] [GO:0043457 "regulation of cellular
respiration" evidence=ISO] [GO:0043631 "RNA polyadenylation"
evidence=ISO] [GO:0045025 "mitochondrial degradosome" evidence=ISO]
[GO:0045926 "negative regulation of growth" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO] [GO:0061014
"positive regulation of mRNA catabolic process" evidence=ISO]
[GO:0070207 "protein homotrimerization" evidence=ISO] [GO:0070584
"mitochondrion morphogenesis" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
[GO:0071850 "mitotic cell cycle arrest" evidence=ISO] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=ISO] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=ISO]
[GO:2000772 "regulation of cellular senescence" evidence=ISO]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 RGD:1307987 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
GO:GO:0034599 GO:GO:0006378 GO:GO:0045926 GO:GO:0035198
GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046
GO:GO:0070584 GO:GO:0000958 GO:GO:0071850 GO:GO:0000175
GO:GO:0043457 GO:GO:0071042 InterPro:IPR022967 SMART:SM00316
GO:GO:0045025 Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014
GO:GO:2000772 HOGENOM:HOG000218327 GO:GO:0004654 PANTHER:PTHR11252
HOVERGEN:HBG053625 GO:GO:0000965 GO:GO:0000964 GO:GO:2000627
GO:GO:0000962 GO:GO:0035928 UniGene:Rn.23118 EMBL:BC092603
IPI:IPI00777805 ProteinModelPortal:Q562B9 STRING:Q562B9
PRIDE:Q562B9 UCSC:RGD:1307987 InParanoid:Q562B9 ArrayExpress:Q562B9
Genevestigator:Q562B9 Uniprot:Q562B9
Length = 452
Score = 117 (46.2 bits), Expect = 0.00027, P = 0.00027
Identities = 46/167 (27%), Positives = 75/167 (44%)
Query: 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR---PVRN 59
+L EY R DGR LR I C + +F GSA ++G T+VL V +++
Sbjct: 20 ILNEYK---RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKS 76
Query: 60 KSI--KVHGSVLINFQ--YSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHP 115
I ++G NF Y ++T E +R+ +A+ I + P
Sbjct: 77 DQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIPKDF-P 135
Query: 116 RSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASL 162
+ I + EVL+++G + A +LAL+DAG+P+ V + L
Sbjct: 136 FT-IRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGL 181
>MGI|MGI:1918951 [details] [associations]
symbol:Pnpt1 "polyribonucleotide nucleotidyltransferase 1"
species:10090 "Mus musculus" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000957 "mitochondrial RNA catabolic
process" evidence=ISO] [GO:0000958 "mitochondrial mRNA catabolic
process" evidence=ISO;IMP] [GO:0000962 "positive regulation of
mitochondrial RNA catabolic process" evidence=ISO] [GO:0000964
"mitochondrial RNA 5'-end processing" evidence=ISO] [GO:0000965
"mitochondrial RNA 3'-end processing" evidence=ISO] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO;IDA] [GO:0005758 "mitochondrial
intermembrane space" evidence=ISO;IDA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=ISO]
[GO:0016020 "membrane" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
[GO:0034599 "cellular response to oxidative stress" evidence=ISO]
[GO:0035198 "miRNA binding" evidence=ISO] [GO:0035458 "cellular
response to interferon-beta" evidence=ISO] [GO:0035927 "RNA import
into mitochondrion" evidence=ISO] [GO:0035928 "rRNA import into
mitochondrion" evidence=ISO] [GO:0043457 "regulation of cellular
respiration" evidence=IMP] [GO:0043631 "RNA polyadenylation"
evidence=ISO] [GO:0045025 "mitochondrial degradosome" evidence=ISO]
[GO:0045926 "negative regulation of growth" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO] [GO:0061014
"positive regulation of mRNA catabolic process" evidence=ISO]
[GO:0070207 "protein homotrimerization" evidence=ISO] [GO:0070584
"mitochondrion morphogenesis" evidence=IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
[GO:0071850 "mitotic cell cycle arrest" evidence=ISO] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=ISO] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=ISO]
[GO:2000772 "regulation of cellular senescence" evidence=ISO]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 MGI:MGI:1918951
Pfam:PF01138 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
GO:GO:0034599 GO:GO:0045926 GO:GO:0035198 GO:GO:0070207
GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584
GO:GO:0000958 GO:GO:0071850 GO:GO:0000175 GO:GO:0043457
GO:GO:0071042 InterPro:IPR022967 SMART:SM00316 GO:GO:0045025
Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772
eggNOG:COG1185 EMBL:BX000351 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:RDKTLMI CTD:87178 HOVERGEN:HBG053625
OrthoDB:EOG4T4CTT GO:GO:0097222 GO:GO:0000965 GO:GO:0000964
GO:GO:2000627 GO:GO:0000962 GO:GO:0035928 EMBL:AJ507387
EMBL:AF465249 EMBL:AK004563 EMBL:AK149419 EMBL:BC027228
EMBL:BC049283 EMBL:BC055826 IPI:IPI00321923 IPI:IPI00556889
RefSeq:NP_082145.1 RefSeq:XP_003689309.1 UniGene:Mm.211131 PDB:1WHU
PDBsum:1WHU ProteinModelPortal:Q8K1R3 SMR:Q8K1R3 STRING:Q8K1R3
PhosphoSite:Q8K1R3 PaxDb:Q8K1R3 PRIDE:Q8K1R3
Ensembl:ENSMUST00000020756 GeneID:71701 KEGG:mmu:71701
UCSC:uc007igp.1 GeneTree:ENSGT00390000014001 InParanoid:Q8K1R3
EvolutionaryTrace:Q8K1R3 NextBio:334263 Bgee:Q8K1R3
Genevestigator:Q8K1R3 GermOnline:ENSMUSG00000020464 Uniprot:Q8K1R3
Length = 783
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 47/171 (27%), Positives = 76/171 (44%)
Query: 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR---PVRN 59
+L EY R DGR LR I C + +F GSA ++G T+VL V +++
Sbjct: 352 ILNEYK---RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKS 408
Query: 60 KSI--KVHGSVLINFQ--YSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHP 115
I ++G NF Y ++T E +R+ +A+ I + P
Sbjct: 409 DQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIPKDF-P 467
Query: 116 RSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT 166
+ I + EVL+++G + A +LAL+DAG+P+ V + L T
Sbjct: 468 FT-IRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKT 517
>CGD|CAL0003194 [details] [associations]
symbol:orf19.168 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0071035
"nuclear polyadenylation-dependent rRNA catabolic process"
evidence=IEA] [GO:0071039 "nuclear polyadenylation-dependent CUT
catabolic process" evidence=IEA] [GO:0071028 "nuclear mRNA
surveillance" evidence=IEA] [GO:0071051 "polyadenylation-dependent
snoRNA 3'-end processing" evidence=IEA] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR001247 CGD:CAL0003194 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AACQ01000245 RefSeq:XP_710705.1 GeneID:3647689
KEGG:cal:CaO19.168 Uniprot:Q59LV6
Length = 291
Score = 80 (33.2 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 30 VFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI 62
+ ++GSAY+E NT + +++GPRP+R I
Sbjct: 47 IIDNANGSAYLEINNTIIEVSIFGPRPIRGSFI 79
Score = 73 (30.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD----GGN--- 132
S+ R R + ++S L V ++++ E +P+S IDI V ++ D GG+
Sbjct: 115 SSSNRGYRTGMNNIEHKLSSYLETCVLSSLILEKYPKSTIDIQVSIISIDKEIGGGHSLL 174
Query: 133 ----FCACVNAATLALIDAGIPMREYV 155
+ C +LAL+D+GI M++ +
Sbjct: 175 WLLQWITC--CCSLALVDSGIEMKDII 199
>UNIPROTKB|Q0BWM9 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_762114.1 ProteinModelPortal:Q0BWM9
STRING:Q0BWM9 GeneID:4288000 KEGG:hne:HNE_3441 PATRIC:32219759
BioCyc:HNEP228405:GI69-3443-MONOMER Uniprot:Q0BWM9
Length = 713
Score = 117 (46.2 bits), Expect = 0.00051, P = 0.00051
Identities = 49/185 (26%), Positives = 80/185 (43%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA-AVYGPRPVRNKSIKVHGSV 68
G R DGR+ ++R I G ++ GS+ +G T+ + A G + G+
Sbjct: 315 GQRIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVATLGTSDDEQYIDGLDGTK 374
Query: 69 LINFQ--YSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
F Y+ +S GE + G R+ L R + E P + I + E+
Sbjct: 375 KEKFMLHYNFPPYSVGETGRMGGAGRREIGHGKLAWRALKAVLPKHEDFPYT-IRMVSEI 433
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYV--VACSASLAGD--TPLVDISHLEETLGGP 181
+++G + A V +LA++DAG+P+ V +A L G L DI E+ LG
Sbjct: 434 TESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEGSEFAVLSDILGDEDHLGDM 493
Query: 182 NLTVA 186
+ VA
Sbjct: 494 DFKVA 498
>UNIPROTKB|G3V6G7 [details] [associations]
symbol:Pnpt1 "Polyribonucleotide nucleotidyltransferase 1"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000958
"mitochondrial mRNA catabolic process" evidence=IEA] [GO:0000962
"positive regulation of mitochondrial RNA catabolic process"
evidence=IEA] [GO:0000964 "mitochondrial RNA 5'-end processing"
evidence=IEA] [GO:0000965 "mitochondrial RNA 3'-end processing"
evidence=IEA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IEA] [GO:0005758
"mitochondrial intermembrane space" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
[GO:0034599 "cellular response to oxidative stress" evidence=IEA]
[GO:0035198 "miRNA binding" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0035928 "rRNA import
into mitochondrion" evidence=IEA] [GO:0043457 "regulation of
cellular respiration" evidence=IEA] [GO:0045025 "mitochondrial
degradosome" evidence=IEA] [GO:0045926 "negative regulation of
growth" evidence=IEA] [GO:0061014 "positive regulation of mRNA
catabolic process" evidence=IEA] [GO:0070207 "protein
homotrimerization" evidence=IEA] [GO:0070584 "mitochondrion
morphogenesis" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071850 "mitotic cell cycle arrest" evidence=IEA] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=IEA] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=IEA]
[GO:2000772 "regulation of cellular senescence" evidence=IEA]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
RGD:1307987 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 CTD:87178 GeneTree:ENSGT00390000014001
EMBL:CH473996 RefSeq:NP_001135843.1 UniGene:Rn.23118
ProteinModelPortal:G3V6G7 Ensembl:ENSRNOT00000004919 GeneID:360992
KEGG:rno:360992 NextBio:674815 Uniprot:G3V6G7
Length = 784
Score = 117 (46.2 bits), Expect = 0.00057, P = 0.00057
Identities = 46/167 (27%), Positives = 75/167 (44%)
Query: 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR---PVRN 59
+L EY R DGR LR I C + +F GSA ++G T+VL V +++
Sbjct: 352 ILNEYK---RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKS 408
Query: 60 KSI--KVHGSVLINFQ--YSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHP 115
I ++G NF Y ++T E +R+ +A+ I + P
Sbjct: 409 DQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIPKDF-P 467
Query: 116 RSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASL 162
+ I + EVL+++G + A +LAL+DAG+P+ V + L
Sbjct: 468 FT-IRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGL 513
>ASPGD|ASPL0000041827 [details] [associations]
symbol:AN2153 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
InterPro:IPR001247 Pfam:PF01138 EMBL:BN001307 InterPro:IPR020568
SUPFAM:SSF54211 eggNOG:COG0689 KO:K12587 OrthoDB:EOG415KPS
EMBL:AACD01000034 RefSeq:XP_659757.1 ProteinModelPortal:Q5BBC7
STRING:Q5BBC7 EnsemblFungi:CADANIAT00008831 GeneID:2875444
KEGG:ani:AN2153.2 HOGENOM:HOG000167506 OMA:NVLAGCI Uniprot:Q5BBC7
Length = 324
Score = 92 (37.4 bits), Expect = 0.00080, Sum P(3) = 0.00080
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 46 KVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAV 105
K+ V+GP+P+ +S ++++ A F+ +RK R D ++ + L A+
Sbjct: 89 KLACTVHGPKPLP-RSATFSPNLVLTTHVKYAPFAARKRKGHIR-DASERDLGVHLETAL 146
Query: 106 SAAIMSEVHPRSQIDIFVEVLQAD 129
I++E P+S +DI + +L+A+
Sbjct: 147 RGVIVAERWPKSGLDITITILEAE 170
Score = 48 (22.0 bits), Expect = 0.00080, Sum P(3) = 0.00080
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
+ K AV Q L D L +D A+ H++L A+++ ++ AG
Sbjct: 273 NSKAAVGTTDQNLSHDAL---IDGAVVAARGAHSVLAEAVRESAMRFAG 318
Score = 42 (19.8 bits), Expect = 0.00080, Sum P(3) = 0.00080
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 136 CVNAATLALIDAGIPMREYVVACSASLAGD 165
C+ AA+ A+ DA I + V A++ D
Sbjct: 195 CITAASAAIADARIDCLDLVAGGVAAVVVD 224
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 263 263 0.00091 114 3 11 22 0.47 33
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 86
No. of states in DFA: 579 (62 KB)
Total size of DFA: 164 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.65u 0.08s 21.73t Elapsed: 00:00:14
Total cpu time: 21.67u 0.08s 21.75t Elapsed: 00:00:14
Start: Thu Aug 15 13:30:43 2013 End: Thu Aug 15 13:30:57 2013