RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18119
(263 letters)
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 148
Score = 118 bits (297), Expect = 3e-34
Identities = 62/140 (44%), Positives = 89/140 (63%), Gaps = 1/140 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ ELR I+ LGV +DGSA E GNTK +AAVYGP+ + + + + +
Sbjct: 10 GKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAV 69
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FST ERK R+ E+S +R+A+ +A++ E+ PR+ ID+F E+LQAD
Sbjct: 70 LRVRYHMTPFSTDERKNPAP-SRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 128
Query: 130 GGNFCACVNAATLALIDAGI 149
G+ + AA+LAL DAGI
Sbjct: 129 AGSRLVSLMAASLALADAGI 148
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 117 bits (293), Expect = 1e-33
Identities = 92/141 (65%), Positives = 113/141 (80%), Gaps = 1/141 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSV 68
G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +++ +
Sbjct: 5 GYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRA 64
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQIDI+V+VLQA
Sbjct: 65 LVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 124
Query: 129 DGGNFCACVNAATLALIDAGI 149
DGG + ACVNAATLA++DAGI
Sbjct: 125 DGGTYAACVNAATLAVLDAGI 145
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 144
Score = 114 bits (285), Expect = 2e-32
Identities = 72/140 (51%), Positives = 97/140 (69%), Gaps = 1/140 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR+ ELR I+ V ++DGS Y+E G KV+AAV+GPR V + ++ +
Sbjct: 6 GLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAI 65
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I ++Y+MA FS ERK RP DR++ EIS ++A A IM E+ PRS IDIFVEVLQAD
Sbjct: 66 IRYRYNMAPFSVEERK-RPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQAD 124
Query: 130 GGNFCACVNAATLALIDAGI 149
G+ AC+NAA++AL+DAG+
Sbjct: 125 AGSRTACLNAASVALVDAGV 144
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 151
Score = 109 bits (272), Expect = 2e-30
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESG-VPRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQ----LRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M STGER R K +L+ + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDAGIPMRE 153
ADGG A + AT+ALIDA +++
Sbjct: 122 ADGGTRTASITGATVALIDALAVLKK 147
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 176
Score = 108 bits (271), Expect = 5e-30
Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 5/152 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
R DGR E RK+ V +++GSA ++ G+T+V+ V G ++
Sbjct: 19 NERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPYPDTPDRGVII 78
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPR-----SQIDIFVE 124
+N + T E + + + + + A +S++ + + +
Sbjct: 79 VNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIH 138
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVV 156
L DG A AA AL++ +P + +
Sbjct: 139 ALDDDGNLLDASALAAIAALMNTKVPAERFDL 170
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domains 1 and 4
{Streptomyces antibioticus [TaxId: 1890]}
Length = 137
Score = 107 bits (268), Expect = 5e-30
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 3/136 (2%)
Query: 20 ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVF 79
++R + + + GSA E+G T++L + + V F
Sbjct: 2 DIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNF 61
Query: 80 ---STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
S GE R+ +A+ + + I E L ++G
Sbjct: 62 PPYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGS 121
Query: 137 VNAATLALIDAGIPMR 152
V A+T++L++AG+P++
Sbjct: 122 VCASTMSLLNAGVPLK 137
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 109 bits (272), Expect = 6e-30
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 11/149 (7%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
LR DGR + R + V S + GSA ++ G+T +L V G
Sbjct: 17 DLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEG--Y 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEV--------HPRSQIDI 121
+ F + +T E + R D +EI+ L + + ++ + +
Sbjct: 75 LEFFVDCSASATPEFEGRGGDDL-GTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYV 133
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIP 150
V +L+ G F A A AL + IP
Sbjct: 134 DVLLLECGGNLFDAISIAVKAALFNTRIP 162
>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 106 bits (266), Expect = 8e-30
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMA 77
G LR C + S+ DGSA QG+T VLA VYGP V+ ++ A
Sbjct: 1 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKV----------SKEIFNKA 50
Query: 78 VFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACV 137
R +R A ++ +HPR+ I + ++V+ G C+
Sbjct: 51 TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 110
Query: 138 NAATLALIDAGI 149
NAA +AL+DAG+
Sbjct: 111 NAACMALVDAGV 122
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 106 bits (264), Expect = 7e-29
Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 17/174 (9%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
R DGR E R +G S +DGSA ++ GNT V+ V + G
Sbjct: 15 NCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKG--Y 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLR-------QAVSAAIMSEVHPRSQIDIF 122
+ + + ++ P G+ +S +
Sbjct: 73 VVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCD 132
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEE 176
+ L DG AC A AL + +P ++ +T L +++ ++
Sbjct: 133 LICLDYDGNILDACTFALLAALKNVQLPE--------VTINEETALAEVNLKKK 178
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 101 bits (251), Expect = 2e-27
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 15 GRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK-----------SIK 63
R LR + R G+ SQ+ GSAY+E G TKVL AV GPR
Sbjct: 2 TRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAP 61
Query: 64 VHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+ + A F+ R+ P G + E++L L++A+ A+ +PR+Q+++
Sbjct: 62 AALRGRLLCDFRRAPFAGRRRR-APPGGCEERELALALQEALEPAVRLGRYPRAQLEVSA 120
Query: 124 EVLQADGGNFCACVNAATLALIDAGI 149
+L+ G A + AA LAL DAG+
Sbjct: 121 LLLEDGGSALAAALTAAALALADAGV 146
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex
aeolicus [TaxId: 63363]}
Length = 149
Score = 98.8 bits (245), Expect = 1e-26
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 5/146 (3%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R+DGR+ +LR + + +GS I G TKV+ V N +K G I
Sbjct: 1 RSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNW-LKGKGQGWIT 59
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVH----PRSQIDIFVEVLQ 127
+YSM +T +R R + + ++++ + A+ + V I + +V+Q
Sbjct: 60 AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 119
Query: 128 ADGGNFCACVNAATLALIDAGIPMRE 153
ADGG A + A +A+ DA I + +
Sbjct: 120 ADGGTATAAITGAFVAVADAIIKLHK 145
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus
subtilis [TaxId: 1423]}
Length = 151
Score = 97.3 bits (241), Expect = 7e-26
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 3/146 (2%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI---KVHGS 67
+R+DGR+ ELR I L S +GS I GNTKV+ V K +
Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ T + ++ + +T EI + +A+ A + E I I +V+Q
Sbjct: 61 AEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 128 ADGGNFCACVNAATLALIDAGIPMRE 153
ADGG A + A LA+ A + +
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIK 146
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 98.3 bits (244), Expect = 7e-26
Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 14/150 (9%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
R DGR+ ++ R IR G G +E G T+VL V + +
Sbjct: 21 KKRLDGRQTYDYRNIRISFGT---DYGCCIVELGKTRVLGQVSCELVSPKLNRA--TEGI 75
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQA--------VSAAIMSEVHPRSQIDI 121
+ F ++ + + R +++ + + + + QI +
Sbjct: 76 LFFNLELSQMAAPAFE-PGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRV 134
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPM 151
+ +L DG A AA +AL P
Sbjct: 135 DLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 191
Score = 92.2 bits (228), Expect = 1e-23
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 5/153 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG-SV 68
G+R DGR+ + R + L ++DGSA ++ G T VLA + G +
Sbjct: 26 GIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLI 85
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEIS----LQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +A + + ++ ++ + + V
Sbjct: 86 VNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVY 145
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVA 157
VL G AC A+ AL + + E
Sbjct: 146 VLDYGGNVLDACTLASVAALYNTKVYKVEQHSN 178
>d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domains 1 and 4
{Streptomyces antibioticus [TaxId: 1890]}
Length = 149
Score = 72.9 bits (178), Expect = 1e-16
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 3/132 (2%)
Query: 22 RKIRCRLGVFS-QSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFS 80
R IR G + Q+ GSA + ++ + + + + A
Sbjct: 18 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 77
Query: 81 TGERKTRPRG--DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVN 138
R G + + + + + Q+ + L D +N
Sbjct: 78 IPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVVAIN 137
Query: 139 AATLALIDAGIP 150
AA+ + AG+P
Sbjct: 138 AASASTQLAGLP 149
>d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 66.6 bits (162), Expect = 5e-15
Identities = 41/89 (46%), Positives = 61/89 (68%)
Query: 150 PMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLP 209
PMR++V ACSA T L D+SH+EE GGP L +A LP SG++A++E+ +LH DHL
Sbjct: 1 PMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLE 60
Query: 210 RVLDCALKGCADIHAILDTAIKQHLIKVA 238
RVL+ A + D+H +LD ++QH+ + +
Sbjct: 61 RVLEAAAQAARDVHTLLDRVVRQHVREAS 89
>d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 65.0 bits (158), Expect = 2e-14
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 151 MREYVVACSASLA---GDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHL-D 206
M + VV C SLA T L+D + LEE LTVA +P+ +VA + S + L +
Sbjct: 1 MYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTE 60
Query: 207 HLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240
+ L+GC ++ +L ++ + + A
Sbjct: 61 SWAEAVRLGLEGCQRLYPVLQQSLVRAARRRGAA 94
>d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 86
Score = 59.5 bits (144), Expect = 2e-12
Identities = 19/82 (23%), Positives = 40/82 (48%)
Query: 150 PMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLP 209
PMR+ + + A ++D++ E G ++ +A +P +V + +L+ + D
Sbjct: 1 PMRDLIAGVAVGKADGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFR 60
Query: 210 RVLDCALKGCADIHAILDTAIK 231
+ D A+KG I+ + A+K
Sbjct: 61 QAFDLAVKGINIIYNLEREALK 82
>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 58.8 bits (142), Expect = 4e-12
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 150 PMREYVVACSASLAGDTP-LVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHL 208
PMR + +L D ++D + +E LT A + K+ + L
Sbjct: 1 PMRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTEL 60
Query: 209 PRVLDCALKGCADIHAILDTAIKQHLIK 236
+ L A + ++++ K
Sbjct: 61 QQCLAAAQAASQHVFRFYRESLQRRYSK 88
>d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 99
Score = 50.1 bits (119), Expect = 7e-09
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 150 PMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP---LSGKVAVMELSQKLHLD 206
PM+ + + + A ++D E+ G ++ A L +A++++ ++ D
Sbjct: 1 PMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRD 60
Query: 207 HLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+ + ++ A KG I+ + AI + I+V
Sbjct: 61 EVKQAIELAKKGALQIYEMQREAILRRYIEVG 92
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 79
Score = 47.1 bits (112), Expect = 4e-08
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 150 PMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQK--LHLDH 207
P+R+ V+ ++ + G+ LVD S E ++G LT+ V M+ S L
Sbjct: 1 PVRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDK-DDNVVAMQKSGGYLLDEKL 59
Query: 208 LPRVLDCALKGCADIHAIL 226
+LD ++ +
Sbjct: 60 FDELLDVSINCARKLREKF 78
>d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 88
Score = 46.9 bits (111), Expect = 8e-08
Identities = 17/88 (19%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 148 GIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQK---LH 204
G P+++ V A S + P++D+ +LE++ +L V + +G ++ + +
Sbjct: 2 GNPLKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDLNV-VMTDAGGFIEVQGTAEGAPFR 60
Query: 205 LDHLPRVLDCALKGCADIHAILDTAIKQ 232
L +L+ A +G ++ + A+ +
Sbjct: 61 PAELNAMLELAQQGMQELFELQRAALAE 88
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 45.6 bits (108), Expect = 2e-07
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 151 MREYVVACSASLAGDTP-LVDISHLEETLGGPNLTVAALPLSGKVAV-MELSQKLHLDHL 208
+R + VA S ++ DT +VD + EE L LT+ + L L
Sbjct: 2 IRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLTGAKL 61
Query: 209 PRVLDCALKGCADIHAILDTAIK 231
+ A+ ++ ++D IK
Sbjct: 62 QDCMSRAVTRHKEVKKLMDEVIK 84
>d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex
aeolicus [TaxId: 63363]}
Length = 105
Score = 45.0 bits (106), Expect = 6e-07
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 149 IPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQK---LHL 205
P++++V A S + D L+D++ E++ ++ V SG+++ + +
Sbjct: 3 TPIKDFVAAVSVGIVNDRILLDLNFEEDSAAQVDMNVVGTG-SGRLSEVHTMGEEYSFTK 61
Query: 206 DHLPRVLDCALKGCADIHAI 225
D L ++LD A KG ++ +
Sbjct: 62 DELIKMLDLAQKGINELIEL 81
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 44.5 bits (105), Expect = 1e-06
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 150 PMREYVVACSASL--AGDTPLVDISHLEETLGGPNLTVAALPLSGKVAV-MELSQKLHLD 206
+ + S + G LVD + EE + L +A + L D
Sbjct: 2 SIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKD 61
Query: 207 HLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+ R A A+I ++ A++
Sbjct: 62 QVLRCSKIAGVKVAEITELILKALENDQKV 91
>d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus
subtilis [TaxId: 1423]}
Length = 86
Score = 39.6 bits (92), Expect = 2e-05
Identities = 14/86 (16%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 149 IPMREYVVACSASL-AGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQK---LH 204
P+ +++ A S + L+D+++ E++ ++ V SG+ ++ + +
Sbjct: 2 NPITDFLAAISVGIDKEQGILLDLNYEEDSSAEVDMNVIMTG-SGRFVELQGTGEEATFS 60
Query: 205 LDHLPRVLDCALKGCADIHAILDTAI 230
+ L +L A KG ++ +
Sbjct: 61 REDLNGLLGLAEKGIQELIDKQKEVL 86
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 84
Score = 38.8 bits (90), Expect = 4e-05
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 150 PMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQK--LHLDH 207
P+ VV S + +VD EE++ ++ + P K+ ++ S K + L
Sbjct: 1 PLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTP-DLKIVGIQKSGKGSMSLQD 59
Query: 208 LPRVLDCALKGCADIHAILDTAI 230
+ + + A + L +
Sbjct: 60 IDQAENTARSTAVKLLEELKKHL 82
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 37.2 bits (86), Expect = 2e-04
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 149 IPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELS--QKLHLD 206
+ + + G +VD + EE +L V+ G V M L +
Sbjct: 1 LSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTS-KGVVTCMRKVGKGSLDPE 59
Query: 207 HLPRVLDCALKGCADIHAILDTAIKQH 233
+ +++ + +HA L + + +
Sbjct: 60 SIFEMMETGKRVGKVLHASLQSVVHKE 86
>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 320
Score = 28.3 bits (62), Expect = 0.88
Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 13/183 (7%)
Query: 73 QYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGN 132
+ VF GE K ++ + +A + S+ D+ V +
Sbjct: 142 EALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRKPV 201
Query: 133 FCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSG 192
A + G L +VD + G N+ V+ +
Sbjct: 202 VKAEWVEEGTHINAIGADGPGKQELDVEILKKAKIVVDDLEQAKHGGEINVAVSKGVIGV 261
Query: 193 KVAVMELSQKLHLDHLPRVLDCALKGCADI-------HAILDTAIKQHLIKVAGARGLGR 245
+ + + + R D +I AI D A+ + + + A ++ +G
Sbjct: 262 EDVHATIGEVIAGLKDGRESD------EEITIFDSTGLAIQDVAVAKVVYENALSKNVGS 315
Query: 246 KFQ 248
K +
Sbjct: 316 KIK 318
>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 186
Score = 27.4 bits (61), Expect = 1.6
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 117 SQIDIFVEVLQADGGNFCACVNAATLALIDAG-IPMREYVVACSASLAG-DTPLV 169
+ ++I E L+ F CV A +A DAG IP+ E V+A + G DT LV
Sbjct: 110 TPVEIMAETLRMVSQGFKVCVEIAIMAA-DAGLIPVDEEVIAIGGTAWGADTALV 163
>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida
[TaxId: 303]}
Length = 340
Score = 26.6 bits (58), Expect = 3.1
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 224 AILDTAIKQHLIKVAGARGLGRKFQL 249
A+ D + +++++ A RG+G K L
Sbjct: 296 ALEDYTVLRYVLQQAEKRGMGTKIDL 321
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 24.9 bits (54), Expect = 6.0
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 111 SEVHPRSQIDIFVEVLQA--DGGNFCACVNAATLALIDAGIPMREYVVACSA---SLAGD 165
E+ PR + ++Q A G + A +L +
Sbjct: 26 FELCPREHTQRILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAE 85
Query: 166 TPLVDISHLE 175
P++ +S L
Sbjct: 86 LPMIGVSTLM 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.387
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 911,004
Number of extensions: 39288
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 34
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)