BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18120
(392 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Homo sapiens
GN=SMARCD1 PE=1 SV=2
Length = 515
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/359 (64%), Positives = 253/359 (70%), Gaps = 43/359 (11%)
Query: 34 AMQPRPGFTP----TPPGPRPGGPGVP--PNQQPPYTGMRPSGPVNPNIANKRPSDARPP 87
A PRPG P TP GP G PG P+ +P G+ SG +
Sbjct: 56 AAYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRP---GLAQSGMDQSRKRPAPQQIQQVQ 112
Query: 88 NNLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKR 147
+ H KKKK+ADKILPQ++R+LVPESQAYMDLLAFERKLD TIMRKR
Sbjct: 113 QQAVQNRNHNA-------KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKR 165
Query: 148 LDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNK 207
LDIQEALKRP+KQKRKLRIFISNTF PAK E EG+VASWELRVEGRLLEDS
Sbjct: 166 LDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSAL---- 221
Query: 208 SGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEW 267
SK D K KRKFSSFFKSLVIELDKDLYGPDNHLVEW
Sbjct: 222 -----------------------SKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEW 258
Query: 268 HRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISA 327
HRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLARLLG+HTQTRPVII A
Sbjct: 259 HRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQA 318
Query: 328 LWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
LWQYIKTHKLQD HEREF+ CDK+ +QIF RMKF+EIPQRL+ LL PP+PI+INH+I
Sbjct: 319 LWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVI 377
>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1
PE=2 SV=1
Length = 515
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 235/359 (65%), Positives = 259/359 (72%), Gaps = 43/359 (11%)
Query: 34 AMQPRPGFTP----TPPGPRPGGPGVP--PNQQPPYTGMRPSGPVNPNIANKRPSDARPP 87
A PRPG P TP GP G PG P+ +P G+ SG + + KRP+ P
Sbjct: 56 AAYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRP---GLAQSG---MDQSLKRPA----P 105
Query: 88 NNLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKR 147
+K Q KKKK+ADKILPQ++R+LVPESQ YMDLLAFERKLD TIMRKR
Sbjct: 106 QQIKQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQDYMDLLAFERKLDQTIMRKR 165
Query: 148 LDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNK 207
LDIQEALKRP+KQKRKLRIFISNTF PAK E EG+VASWELRVEGRLLEDS
Sbjct: 166 LDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSAL---- 221
Query: 208 SGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEW 267
SK D K KRKFSSFFKSLVIELDKDLYGPDNHLVEW
Sbjct: 222 -----------------------SKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEW 258
Query: 268 HRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISA 327
HRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLARLLG+HTQTRPVII A
Sbjct: 259 HRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQA 318
Query: 328 LWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
LWQYIKTHKLQD HEREF+ CDK+ +QIF RMKF+EIPQRL+ LL PP+PI+INH+I
Sbjct: 319 LWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVI 377
>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Mus musculus
GN=Smarcd1 PE=1 SV=3
Length = 515
Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/359 (64%), Positives = 253/359 (70%), Gaps = 43/359 (11%)
Query: 34 AMQPRPGFTP----TPPGPRPGGPGVP--PNQQPPYTGMRPSGPVNPNIANKRPSDARPP 87
A PRPG P TP GP G PG P+ +P G+ SG +
Sbjct: 56 AAYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRP---GLAQSGMDQSRKRPAPQQIQQVQ 112
Query: 88 NNLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKR 147
+ H KKKK+ADKILPQ++R+LVPESQAYMDLLAFERKLD TIMRKR
Sbjct: 113 QQAVQNRNHNA-------KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKR 165
Query: 148 LDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNK 207
LDIQEALKRP+KQKRKLRIFISNTF PAK E EG+VASWELRVEGRLLED+
Sbjct: 166 LDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDAAL---- 221
Query: 208 SGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEW 267
SK D K KRKFSSFFKSLVIELDKDLYGPDNHLVEW
Sbjct: 222 -----------------------SKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEW 258
Query: 268 HRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISA 327
HRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLARLLG+HTQTRPVII A
Sbjct: 259 HRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQA 318
Query: 328 LWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
LWQYIKTHKLQD HEREF+ CDK+ +QIF RMKF+EIPQRL+ LL PP+PI+INH+I
Sbjct: 319 LWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVI 377
>sp|Q6P9Z1|SMRD3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Mus musculus
GN=Smarcd3 PE=1 SV=2
Length = 483
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/357 (61%), Positives = 255/357 (71%), Gaps = 46/357 (12%)
Query: 38 RPGFTPTPPGPRPGGPGVPPNQQPPYTG---MRPS-GPVNPNIANKRPSDARPPNNLKND 93
RPG P G P PP PY G +RP P A KR A PP +
Sbjct: 27 RPGMPSGARMPHQGAPMGPPGS--PYMGSPAVRPGLAPAGMEPARKRA--APPPGQSQAQ 82
Query: 94 YQHGPPGPGPIK----KKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLD 149
Q P P + K++K+ADKILPQ++R+LVPESQAYMDLLAFERKLD TIMRKR+D
Sbjct: 83 GQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVD 142
Query: 150 IQEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSG 209
IQEALKRPMKQKRKLR++ISNTF PAK
Sbjct: 143 IQEALKRPMKQKRKLRLYISNTFNPAK------------------------------PDA 172
Query: 210 EGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHR 269
E +GS+ASWELRVEG+LL +DP+K KRKFSSFFKSLVIELDKDLYGPDNHLVEWHR
Sbjct: 173 EDSDGSIASWELRVEGKLL----DDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHR 228
Query: 270 TPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALW 329
TPTTQETDGFQVKRPGD +VRCT+LL+LDYQP QFKLDPRLARLLG+HTQ+R I+ ALW
Sbjct: 229 TPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALW 288
Query: 330 QYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
QY+KT++LQD+H++E+IN DK+F+QIF CPR+KF+EIPQRL LL PPDPIVINH+I
Sbjct: 289 QYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVI 345
>sp|Q6STE5|SMRD3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Homo sapiens
GN=SMARCD3 PE=1 SV=1
Length = 483
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/357 (61%), Positives = 255/357 (71%), Gaps = 46/357 (12%)
Query: 38 RPGFTPTPPGPRPGGPGVPPNQQPPYTG---MRPS-GPVNPNIANKRPSDARPPNNLKND 93
RPG P G P PP PY G +RP P A KR A PP +
Sbjct: 27 RPGMPSGARMPHQGAPMGPPGS--PYMGSPAVRPGLAPAGMEPARKRA--APPPGQSQAQ 82
Query: 94 YQHGPPGPGPIK----KKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLD 149
Q P P + K++K+ADKILPQ++R+LVPESQAYMDLLAFERKLD TIMRKR+D
Sbjct: 83 SQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVD 142
Query: 150 IQEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSG 209
IQEALKRPMKQKRKLR++ISNTF PAK
Sbjct: 143 IQEALKRPMKQKRKLRLYISNTFNPAK------------------------------PDA 172
Query: 210 EGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHR 269
E +GS+ASWELRVEG+LL +DP+K KRKFSSFFKSLVIELDKDLYGPDNHLVEWHR
Sbjct: 173 EDSDGSIASWELRVEGKLL----DDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHR 228
Query: 270 TPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALW 329
TPTTQETDGFQVKRPGD +VRCT+LL+LDYQP QFKLDPRLARLLG+HTQ+R I+ ALW
Sbjct: 229 TPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALW 288
Query: 330 QYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
QY+KT++LQD+H++E+IN DK+F+QIF CPR+KF+EIPQRL LL PPDPIVINH+I
Sbjct: 289 QYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVI 345
>sp|O54772|SMRD2_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Rattus norvegicus
GN=Smarcd2 PE=2 SV=3
Length = 531
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 209/383 (54%), Positives = 255/383 (66%), Gaps = 43/383 (11%)
Query: 16 LRYPPPSGPPMRYGNQNMAMQPRPGFTPT-PPGPRPG--GPGVPPNQQPPYTGMRPSGPV 72
LR P PSG M + F P P GP PG+ P + P G++ P
Sbjct: 42 LRGPGPSG--------GMGVPGAAAFRPMGPAGPAAQYQRPGMSPGSRMPMAGLQVGPPA 93
Query: 73 NPNIANKRPSDARPPNNLKNDY-------QHGPPGPGPIK--KKKKLADKILPQKVRDLV 123
P P + + + Q PP P + K++K+ADK+LPQ++R+LV
Sbjct: 94 GSPFGTAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELV 153
Query: 124 PESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGEE 183
PESQAYMDLLAFERKLD TI RKR++IQEA+K+P+ QKRKLRI+ISNTF P+K G+
Sbjct: 154 PESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKADGD--- 210
Query: 184 GSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFS 243
+S G VASWELRVEG+LL +DP+K KRKFS
Sbjct: 211 ----------------NSGTAGTPGGTPAADKVASWELRVEGKLL----DDPSKQKRKFS 250
Query: 244 SFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQ 303
SFFKSLVIELDK+LYGPDNHLVEWHR PTTQETDGFQVKRPGD NV+CT+LL+LD+QP Q
Sbjct: 251 SFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQ 310
Query: 304 FKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKF 363
+KLDPRLARLLGVHTQTR I+ ALW YIK ++LQD HERE+INC+++F QIFSC R++F
Sbjct: 311 YKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRF 370
Query: 364 AEIPQRLNPLLHPPDPIVINHII 386
+EIP +L LL PDPIVINH+I
Sbjct: 371 SEIPMKLAGLLQHPDPIVINHVI 393
>sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Homo sapiens
GN=SMARCD2 PE=1 SV=3
Length = 531
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/353 (56%), Positives = 249/353 (70%), Gaps = 32/353 (9%)
Query: 43 PTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDY-------Q 95
P P + PG+ P + P G++ P P P + + + Q
Sbjct: 64 PAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQ 123
Query: 96 HGPPGPGPIK--KKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEA 153
PP P + K++K+ADK+LPQ++R+LVPESQAYMDLLAFERKLD TI RKR++IQEA
Sbjct: 124 AQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEA 183
Query: 154 LKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEE 213
+K+P+ QKRKLRI+ISNTF P+K EG+ A P + G++
Sbjct: 184 IKKPLTQKRKLRIYISNTFSPSK--AEGDSAGTA---------------GTPGGTPAGDK 226
Query: 214 GSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTT 273
VASWELRVEG+LL +DP+K KRKFSSFFKSLVIELDK+LYGPDNHLVEWHR PTT
Sbjct: 227 --VASWELRVEGKLL----DDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTT 280
Query: 274 QETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIK 333
QETDGFQVKRPGD NV+CT+LL+LD+QP Q+KLDPRLARLLGVHTQTR I+ ALW YIK
Sbjct: 281 QETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIK 340
Query: 334 THKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
++LQD HERE+INC+++F QIFSC R++F+EIP +L LL PDPIVINH+I
Sbjct: 341 HNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVI 393
>sp|Q99JR8|SMRD2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Mus musculus
GN=Smarcd2 PE=2 SV=2
Length = 531
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/383 (54%), Positives = 255/383 (66%), Gaps = 43/383 (11%)
Query: 16 LRYPPPSGPPMRYGNQNMAMQPRPGFTPT-PPGPRPG--GPGVPPNQQPPYTGMRPSGPV 72
LR P PSG M + F P P GP PG+ P + P G++ P
Sbjct: 42 LRGPGPSG--------GMGVPGAAAFRPMGPAGPAAQYQRPGMSPGSRMPMAGLQVGPPA 93
Query: 73 NPNIANKRPSDARPPNNLKNDY-------QHGPPGPGPIK--KKKKLADKILPQKVRDLV 123
P P + + + Q PP P + K++K+ADK+LPQ++R+LV
Sbjct: 94 GSPFGTAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELV 153
Query: 124 PESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGEE 183
PESQAYMDLLAFERKLD TI RKR++IQEA+K+P+ QKRKLRI+ISNTF P+K G+
Sbjct: 154 PESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKADGD--- 210
Query: 184 GSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFS 243
++ G VASWELRVEG+LL +DP+K KRKFS
Sbjct: 211 ----------------NAGTAGTPGGTPAADKVASWELRVEGKLL----DDPSKQKRKFS 250
Query: 244 SFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQ 303
SFFKSLVIELDK+LYGPDNHLVEWHR PTTQETDGFQVKRPGD NV+CT+LL+LD+QP Q
Sbjct: 251 SFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQ 310
Query: 304 FKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKF 363
+KLDPRLARLLGVHTQTR I+ ALW YIK ++LQD HERE+INC+++F QIFSC R++F
Sbjct: 311 YKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRF 370
Query: 364 AEIPQRLNPLLHPPDPIVINHII 386
+EIP +L LL PDPIVINH+I
Sbjct: 371 SEIPMKLAGLLQHPDPIVINHVI 393
>sp|E1BJD1|SMRD2_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Bos taurus GN=SMARCD2
PE=3 SV=1
Length = 531
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/353 (55%), Positives = 244/353 (69%), Gaps = 32/353 (9%)
Query: 43 PTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDY-------Q 95
P P + PG+ P + P G++ P P P + + + Q
Sbjct: 64 PAGPAAQYQRPGMSPGSRMPMAGLQVGPPAGSPFGTAAPLRPGMPPTMMDPFRKRLLVPQ 123
Query: 96 HGPPGPGPIK--KKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEA 153
PP P + K++K+ADK+LPQ++R+LVPESQAYMDLLAFERKLD TI RKR++IQEA
Sbjct: 124 AQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEA 183
Query: 154 LKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEE 213
+K+P+ QKRKLRI+ISNTF P+K G+ + +
Sbjct: 184 IKKPLTQKRKLRIYISNTFSPSKAEGDTAGTTGTPGGTPAGDK----------------- 226
Query: 214 GSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTT 273
VASWELRVEG+LL +DP+K KRKFSSFFKSLVIELDK+LYGPDNHLVEWHR PTT
Sbjct: 227 --VASWELRVEGKLL----DDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTT 280
Query: 274 QETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIK 333
QETDGFQVKRPGD NV+CT+LL+LD+QP Q+KLDPRLARLLGVHTQTR I+ ALW YIK
Sbjct: 281 QETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIK 340
Query: 334 THKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
++LQD HERE+INC+++F QIFSC R++F+EIP +L LL PDPIVINH+I
Sbjct: 341 HNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVI 393
>sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana
GN=At5g14170 PE=1 SV=1
Length = 534
Score = 188 bits (477), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 174/311 (55%), Gaps = 28/311 (9%)
Query: 80 RPSDARPPNNLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKL 139
RP A NN + + P KKK+KL +K L ++V ++PES Y LL FE ++
Sbjct: 117 RPPGAPASNNTISPMRTMELTPAARKKKQKLPEKSLQERVAAILPESALYTQLLEFESRV 176
Query: 140 DSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGE-EGSVASWELRVEGRLL 198
D+ + RK++DIQEALK P ++ LRI++ N+F + G +W L++ GR+L
Sbjct: 177 DAALTRKKVDIQEALKNPPCIQKTLRIYVFNSFANQNNTIPGNPNADPPTWTLKIIGRIL 236
Query: 199 EDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLY 258
ED DP++ G ++ N + KFSSFFK + + LD+ LY
Sbjct: 237 EDGV-DPDQPGFVQKA---------------------NPLHPKFSSFFKRVTVSLDQRLY 274
Query: 259 GPDNHLVEWH--RTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGV 316
P+N L+ W R+P QE GF++KR G++ +I L ++Y P +FKL L +LG+
Sbjct: 275 -PENPLIIWENARSPAPQE--GFEIKRKGNQEFAASIRLEMNYVPEKFKLSTALMDVLGI 331
Query: 317 HTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHP 376
+TRP II+A+W Y+K KLQ+ ++ F NCD +++F ++KF + Q+++ L P
Sbjct: 332 EVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSP 391
Query: 377 PDPIVINHIIR 387
P PI + H I+
Sbjct: 392 PPPIHLEHKIK 402
>sp|Q9P7S3|SSR3_SCHPO SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1
Length = 425
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 163/301 (54%), Gaps = 26/301 (8%)
Query: 91 KNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDI 150
+N Q G +KK ++ ++ +P + + +PE++ Y+ L ERKLDS I+RKR D+
Sbjct: 9 ENGVQSGNGEDAELKKSMRIIEREIPDSLLEKIPEAEDYIALQDLERKLDSLIVRKRFDL 68
Query: 151 QEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGE 210
Q++L R + R LR++I +T + SW+ + E N N SG+
Sbjct: 69 QDSLSRNSHKTRILRMYIHSTV------------ANQSWQQKGE--------NQENNSGD 108
Query: 211 GEEGSVASWELRVEGRLLEDSKNDPNKVKRK--FSSFFKSLVIEL--DKDLYGPDNHLVE 266
+ W L +EGRLL + ++ +K F++FF+ + I++ DLY P + VE
Sbjct: 109 INSLPIPEWTLHIEGRLLVNPDDEDDKAFELAPFTNFFRKIAIQILRSDDLY-PSGNYVE 167
Query: 267 WHRTPTTQET-DGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVII 325
W++ P T +G V R GD++V I+L + P ++KL A +LG+ TRP I+
Sbjct: 168 WNKLPDNSNTSNGITVTRKGDQSVDVKIMLYPEEHPERYKLSKAFANILGIREGTRPDIV 227
Query: 326 SALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHI 385
S LWQYIK H+LQD E+ INCDK +F R+ F IP+ +N L P DPIVI +
Sbjct: 228 SYLWQYIKFHRLQDMEEKRLINCDKALRDLFEADRLYFPRIPELMNRFLEPIDPIVIPYT 287
Query: 386 I 386
I
Sbjct: 288 I 288
>sp|Q556Z0|SNF12_DICDI SWI/SNF complex component SNF12 homolog OS=Dictyostelium discoideum
GN=snf12-1 PE=3 SV=1
Length = 456
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 154/285 (54%), Gaps = 45/285 (15%)
Query: 117 QKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKR-PMKQKRKLRIFISNTFYPA 175
+++ PE + LL FE KLD++I ++ +DIQEA +R +K R LR+ I NT+
Sbjct: 68 EELISFAPECLLFSQLLEFEEKLDASINKRLIDIQEASRRNSIKNIRTLRLSIYNTY--- 124
Query: 176 KESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKND- 234
S S ++ + L + P SW LRVEG+LL++S+++
Sbjct: 125 ---------SNQSAYYHLDNKSLNSVQERP------------SWSLRVEGKLLDESQDEL 163
Query: 235 PNKV------------KRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVK 282
NK KRKFSSFFK + I++ EW ++ T ETDGF++K
Sbjct: 164 VNKSIKSSSSSSSTANKRKFSSFFKKVFIQIGH------RDTCEWDKSQTFTETDGFEIK 217
Query: 283 RPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHE 342
R G++ V IL+ LD+ P ++K+ L++LL +HT T+P II ALW YIK++ L DA
Sbjct: 218 RNGNQEVDIKILMYLDHVPQKYKVLGGLSQLLNIHTDTKPRIILALWHYIKSNTLLDAET 277
Query: 343 REFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHIIR 387
++ I CD+ + IFS ++F +IPQ L L PPDP+ + +
Sbjct: 278 KK-ITCDENLKNIFSLEELQFNQIPQLLREHLSPPDPLEFQYTLH 321
>sp|P25632|RSC6_YEAST Chromatin structure-remodeling complex protein RSC6
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC6 PE=1 SV=1
Length = 483
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 50/243 (20%)
Query: 132 LLAFERKLDSTIMRKRLDIQEALKRPMK------QKRKLRIFISNTF--YPAKESGEGEE 183
L+ + +LD + R+RLD L K K LRI++ NT P +SG +
Sbjct: 36 LIEMDSRLDLYLTRRRLDTSINLPTNTKTKDHPPNKEMLRIYVYNTTESSPRSDSGTPAD 95
Query: 184 GSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWE-LRVEGRLLEDSKNDPNKVKRKF 242
+W LR+EG+LL +S N + E EG ++ L+ G K +++
Sbjct: 96 SGKTTWTLRIEGKLLHESANGKHPFSEFLEGVAVDFKRLKPLGM---------GKKRKRD 146
Query: 243 SSFFKSLVIEL------DKDLYGPDN------------------HLVEW-HRTPTTQETD 277
SS SL + L D+D DN +EW + E D
Sbjct: 147 SSL--SLPLNLQQPEYNDQDSTMGDNDNGEDEDSAEAESREEIVDALEWNYDENNVVEFD 204
Query: 278 GFQVKRPGDKNVRCTILLLL---DYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKT 334
G +KR G N+RC+I + L D +Q+ P LA L+G+ T + + ++++YI
Sbjct: 205 GIDIKRQGKDNLRCSITIQLRGVDGGKVQYS--PNLATLIGMQTGSVNDAVYSIYKYILI 262
Query: 335 HKL 337
+ L
Sbjct: 263 NNL 265
>sp|P53628|SNF12_YEAST Transcription regulatory protein SNF12 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNF12 PE=1 SV=1
Length = 566
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 120/296 (40%), Gaps = 58/296 (19%)
Query: 111 ADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQK--------- 161
+D ++P + +L+PE ++ L+ E++LD I + L ++ + + + K
Sbjct: 57 SDMVIPDHLAELIPELYSFQQLVDSEKRLDHFIHLRNLHMKRMVAQWERSKLSQEFLYPH 116
Query: 162 ------RKLRIFISNTF----YPAKESGEGEEGSV--ASWELRVEGRLLE---------- 199
+ LRIFISN + + E + ++ A+W +R+EGRLL+
Sbjct: 117 LNFPNVKFLRIFISNVSENQPWQMDTNNEADLMALENATWTMRIEGRLLDNVQANDPARE 176
Query: 200 -----------DSKNDPNKSGEGEEGSVASWELRVEG----RL---------LEDSKNDP 235
D KN N + + + A E EG +L L + N
Sbjct: 177 KFSSFIESIVVDFKNKENDNVPSTKFNAAPEENATEGPSDKKLNLNLPLQFSLPNGDNST 236
Query: 236 NKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTT-QETDGFQVKRPGDKNVRCTIL 294
+ ++ + D P V+W P + DG +KR G +NV CTI
Sbjct: 237 TTNTDQNNATMGEETAKKDMSSTTPKLESVKWQYDPNNPVDFDGLDIKRVGSENVECTIS 296
Query: 295 LLLDYQPLQ--FKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINC 348
+L P + P+L ++G+ + T I ++++YI ++L E F N
Sbjct: 297 ILRKSSPEEPFMSYSPQLTAIIGLKSGTSHDAIFSIYKYIHLNELLTNDESAFENL 352
>sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
Length = 233
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 304 FKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKF 363
KL P+LA LG+ +RP + LW+YIK H LQD +++ I CD + +F +
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHM 180
Query: 364 AEIPQRLNPLL 374
+ + L L+
Sbjct: 181 FTMNKYLTNLM 191
>sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1
SV=1
Length = 228
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 303 QFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIF 356
+ L LA LLG H TR ++ LW YIK H LQ+ + ++ I CD+ E I
Sbjct: 123 KVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELIL 176
>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRI1 PE=1 SV=1
Length = 226
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 310 LARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQR 369
L + LG R ++ +WQYIK H LQ+ +R I CD+ E IF +M + +
Sbjct: 130 LQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG-KKMTMFSMNKL 188
Query: 370 LNPLLHPPDPIV 381
L L PD IV
Sbjct: 189 LTKHLFNPDEIV 200
>sp|A9BCI5|IF2_PROM4 Translation initiation factor IF-2 OS=Prochlorococcus marinus
(strain MIT 9211) GN=infB PE=3 SV=1
Length = 1113
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 26/127 (20%)
Query: 13 QAPLRYPPPSGPPMR---YGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYT----G 65
+AP+R P P MR + M +Q +P PP PR G PP+Q+ T G
Sbjct: 324 KAPIRQRPGMPPGMRKPVAPGELMQLQ-KPTGRSQPPAPRRVGAPAPPSQRADSTKDRQG 382
Query: 66 MRPSG--PVN---PNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKKLADKILPQKVR 120
P PVN P A K+PS H PPG GP K++ D + +R
Sbjct: 383 KSPGAKQPVNRPTPATAPKKPS-------------HRPPGSGPTKRRSDWDDAAKLEALR 429
Query: 121 DLVPESQ 127
+ P+ Q
Sbjct: 430 NKAPQKQ 436
>sp|Q4V7K4|PATL2_XENLA Protein PAT1 homolog 2 OS=Xenopus laevis GN=patl2 PE=1 SV=1
Length = 733
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 2 SQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPR---PGFTPTPPGPRPGGPGVPPN 58
SQR QG + +P Y P R+ Q + PR P + TPP R G PN
Sbjct: 220 SQRLQGPEMGAMSPKPYRP------RFMRQQSPLVPRSMRPSYPFTPP--RRGPSVFAPN 271
Query: 59 QQPPYTGMRPSGPVNPNIAN 78
Q P + P P++PN++
Sbjct: 272 QSPGFVSQTPFRPMSPNVST 291
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,693,061
Number of Sequences: 539616
Number of extensions: 9523734
Number of successful extensions: 46384
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 1249
Number of HSP's that attempted gapping in prelim test: 32580
Number of HSP's gapped (non-prelim): 8245
length of query: 392
length of database: 191,569,459
effective HSP length: 119
effective length of query: 273
effective length of database: 127,355,155
effective search space: 34767957315
effective search space used: 34767957315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)