Query psy18120
Match_columns 392
No_of_seqs 205 out of 631
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 23:01:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2570|consensus 100.0 2.2E-79 4.7E-84 611.6 23.7 255 104-389 39-294 (420)
2 COG5531 SWIB-domain-containing 99.9 1E-23 2.2E-28 200.5 7.8 158 215-389 32-203 (237)
3 smart00151 SWIB SWI complex, B 99.9 3.1E-23 6.6E-28 166.5 6.8 76 301-376 2-77 (77)
4 PF02201 SWIB: SWIB/MDM2 domai 99.9 1.2E-23 2.6E-28 168.5 1.2 74 301-374 2-75 (76)
5 KOG1946|consensus 99.7 1.2E-18 2.7E-23 166.7 6.6 80 302-381 102-181 (240)
6 PRK14724 DNA topoisomerase III 99.7 2.4E-17 5.2E-22 184.1 6.5 73 303-375 915-987 (987)
7 PRK06319 DNA topoisomerase I/S 99.1 2.5E-11 5.4E-16 134.8 4.4 74 302-375 786-859 (860)
8 KOG1924|consensus 96.6 0.031 6.8E-07 61.9 13.0 31 300-330 875-905 (1102)
9 KOG1924|consensus 95.3 0.057 1.2E-06 59.9 8.3 16 159-174 688-703 (1102)
10 KOG2893|consensus 81.2 11 0.00024 37.2 9.3 7 292-298 313-319 (341)
11 KOG0487|consensus 72.8 4.2 9.1E-05 41.2 3.9 52 101-171 232-286 (308)
12 KOG2522|consensus 71.5 4 8.7E-05 43.4 3.6 60 317-376 380-448 (560)
13 KOG0428|consensus 52.3 17 0.00036 36.0 3.7 56 261-316 36-119 (314)
14 PRK05350 acyl carrier protein; 50.7 8.4 0.00018 30.8 1.2 54 319-375 2-55 (82)
15 KOG4594|consensus 50.3 94 0.002 31.6 8.6 10 74-83 206-215 (354)
16 PF03366 YEATS: YEATS family; 49.3 29 0.00063 28.5 4.2 61 218-299 3-63 (84)
17 KOG1923|consensus 42.4 1E+02 0.0022 35.1 8.2 40 104-146 360-400 (830)
18 KOG2893|consensus 42.4 3.7E+02 0.0079 27.0 11.8 6 38-43 162-167 (341)
19 KOG4849|consensus 40.5 1.7E+02 0.0037 30.7 8.9 10 4-13 206-215 (498)
20 KOG0307|consensus 40.2 4.6E+02 0.01 31.2 13.1 16 130-145 972-987 (1049)
21 PF09804 DUF2347: Uncharacteri 38.8 32 0.00069 34.4 3.5 44 250-297 3-48 (280)
22 PF13545 HTH_Crp_2: Crp-like h 35.1 44 0.00096 25.5 3.1 42 308-353 32-74 (76)
23 PF13950 Epimerase_Csub: UDP-g 34.4 93 0.002 24.0 4.7 38 298-335 19-58 (62)
24 PRK05828 acyl carrier protein; 32.1 37 0.00081 27.8 2.3 54 319-375 1-54 (84)
25 PF07898 DUF1676: Protein of u 31.5 40 0.00087 27.8 2.5 53 275-338 17-69 (106)
26 TIGR03697 NtcA_cyano global ni 31.2 52 0.0011 29.2 3.3 44 308-355 147-191 (193)
27 PRK13918 CRP/FNR family transc 31.0 57 0.0012 29.3 3.6 47 308-358 153-200 (202)
28 KOG4849|consensus 30.6 3.1E+02 0.0067 28.9 9.0 13 104-116 335-347 (498)
29 KOG1984|consensus 26.1 6.4E+02 0.014 29.7 11.1 7 1-7 1-7 (1007)
30 COG1654 BirA Biotin operon rep 25.4 56 0.0012 26.7 2.2 26 302-334 17-42 (79)
31 KOG3895|consensus 25.1 4.4E+02 0.0095 27.9 8.9 8 1-8 390-397 (488)
32 cd04762 HTH_MerR-trunc Helix-T 24.3 1.2E+02 0.0025 20.4 3.5 24 308-338 4-27 (49)
33 CHL00124 acpP acyl carrier pro 23.1 47 0.001 26.2 1.3 54 319-375 1-54 (82)
34 PRK09392 ftrB transcriptional 22.4 1.1E+02 0.0024 28.4 3.9 45 308-357 177-222 (236)
35 PF06668 ITI_HC_C: Inter-alpha 22.1 2.8E+02 0.0061 26.1 6.5 91 221-315 4-128 (188)
36 PF01047 MarR: MarR family; I 21.9 31 0.00068 25.2 0.1 38 309-346 22-59 (59)
37 KOG0921|consensus 20.6 1.7E+02 0.0037 34.4 5.5 10 60-69 1205-1214(1282)
38 PRK12449 acyl carrier protein; 20.5 86 0.0019 24.5 2.4 53 319-374 1-53 (80)
39 TIGR01764 excise DNA binding d 20.1 95 0.0021 21.1 2.3 24 308-338 5-28 (49)
No 1
>KOG2570|consensus
Probab=100.00 E-value=2.2e-79 Score=611.56 Aligned_cols=255 Identities=73% Similarity=1.152 Sum_probs=239.3
Q ss_pred ccccCCccccC-CchHHHhhcccHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCccccceEEEEEEEeecCCCCCCCCC
Q psy18120 104 IKKKKKLADKI-LPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGE 182 (392)
Q Consensus 104 ~~k~rKptDk~-iP~~v~~lvPes~~Y~~L~d~ErrLD~tI~RKrlDiqesl~rp~k~kR~LRIfIsNT~~~q~~~~e~~ 182 (392)
..||+|..||. ||+.|.+++||++.|++|++||+|||++|+|||+||||++++|.+.+|+|||||||||++|+|+..+.
T Consensus 39 ~~kk~kl~dk~~i~~~~~~~ipes~~y~~Ll~~e~Kld~~i~Rk~~diqealK~p~~~kk~LRIyI~ntf~~~~~~~~~~ 118 (420)
T KOG2570|consen 39 ELKKKKLADKLNIPQRILELIPESQAYMDLLAFERKLDSTIIRKRLDIQEALKRPPKIKKKLRIYISNTFENQKPSTKDT 118 (420)
T ss_pred hhhhhhcchhcccCHHHHhhCccHHHHHHHHHHHHHhhhHHHHhhhhHHHHhcCCccccceEEEEEEecccCCCCCCCCC
Confidence 36888888888 99999999999999999999999999999999999999999999999999999999999988754331
Q ss_pred CCCccchhhhhccccccCCCCCCCCCCCCCCCCccccceeecCcccccCCCCCccccccccccchheEEEcccCCCCCCC
Q psy18120 183 EGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDN 262 (392)
Q Consensus 183 ~~~~~~wq~kieGrlldd~~~d~~~~~~~~~~~~~sWtLrIeGrlL~d~~~d~~~~~~KFSsFfksI~VelD~~l~~p~~ 262 (392)
. +...++||||||||||++...+. . ++|||||||+|+||||+++|+|++
T Consensus 119 ~-----------------------------~a~~~sWtLriEGrLLd~~~~~~-~-krkFSsFfkslvIelDk~~y~P~~ 167 (420)
T KOG2570|consen 119 P-----------------------------EADLPSWTLRIEGRLLDDPVDDW-G-KRKFSSFFKSLVIELDKDLYGPDN 167 (420)
T ss_pred C-----------------------------CCCCcceeeeeeeeecccCcccc-c-cccchHHHhhhhhhhhhhhccCcc
Confidence 0 11289999999999999962211 1 899999999999999999999999
Q ss_pred ceeEeccCCCCCCCCCceeecCCCceeeEEEEEeecCCCCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCC
Q psy18120 263 HLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHE 342 (392)
Q Consensus 263 ~~VEW~k~~~~~efDGfeiKR~G~~nv~~tI~L~~d~~P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~d 342 (392)
|.||||++++++++|||+|||+|+.|+.|||+|+++|+|++|+|||.||.+||++++||++||.+||+|||.|+|||++|
T Consensus 168 ~lvEW~r~~~~~etdGf~VKR~Gd~~v~ctIll~l~~~P~~fklsp~La~lLGi~t~Trp~iI~alWqYIk~n~Lqd~~e 247 (420)
T KOG2570|consen 168 HLVEWHRDPNTNETDGFQVKRPGDRNVRCTILLLLDYQPEEFKLSPRLANLLGIHTGTRPDIVTALWQYIKTNKLQDPED 247 (420)
T ss_pred ceeeeeecCCCCCcCceeeeccCCCccceEEEEeeccCCcccccCHHHHHHhhhccCcchHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecchhHHhhcCCCccccccHHHHhhcCCCCCCCceEeEEEEee
Q psy18120 343 REFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHIIRYL 389 (392)
Q Consensus 343 k~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~P~~PI~I~YtIrv~ 389 (392)
+.+|+||.+|++|||+++++|.+|+.+|++||.|++||+|+|+|+|+
T Consensus 248 ~~~incD~~l~qif~~~rl~F~elp~~l~~lL~P~dPIvi~h~I~v~ 294 (420)
T KOG2570|consen 248 SDFINCDKALEQIFGVDRLKFPELPQLLNPLLSPPDPIVIDHTISVD 294 (420)
T ss_pred chhhcchHHHHHhhcccccccccchhhhhhccCCCCCeeecceeccC
Confidence 99999999999999999999999999999999999999999999886
No 2
>COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]
Probab=99.89 E-value=1e-23 Score=200.52 Aligned_cols=158 Identities=27% Similarity=0.443 Sum_probs=123.6
Q ss_pred CccccceeecCcccccCCCCCccccccccccchheEEEcccC-------CCCCCCceeEeccCCC-------CCCCCCce
Q psy18120 215 SVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKD-------LYGPDNHLVEWHRTPT-------TQETDGFQ 280 (392)
Q Consensus 215 ~~~sWtLrIeGrlL~d~~~d~~~~~~KFSsFfksI~VelD~~-------l~~p~~~~VEW~k~~~-------~~efDGfe 280 (392)
..+.|+++|+||+..- . ...+.+|.++.....+++... .+-.+....||...++ ..++++..
T Consensus 32 ~~~~~~~~l~~r~k~~--~--~~~~~~~~s~~~~~~~~~~~k~~~~r~~~~~~~~~~~~~~~~~s~k~~~n~~te~k~~~ 107 (237)
T COG5531 32 LFSEWTVRLEGRFKDN--N--DLIRDKFDSLAEEPRVLRKEKYNITRKTTGKNDLPKEEDSSLPSSKETENGDTEGKETD 107 (237)
T ss_pred cchhhheehhhhhhhc--c--chhhhhhhhhcccchhhhhhhhccCcccccccccccccccccCcchhhhcCcccccccc
Confidence 4789999999999873 2 234789999988887776432 1223445666765432 35678888
Q ss_pred eecCCCceeeEEEEEeecCCCCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCc
Q psy18120 281 VKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPR 360 (392)
Q Consensus 281 iKR~G~~nv~~tI~L~~d~~P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~ 360 (392)
.+|.++.+ .......+.|+||+.||.|||..++||++||+.||+|||.|||||++||++|.||+.|+.|||.+.
T Consensus 108 ~~k~~~~~------~~~~~~~~~~~lS~~La~ilG~~~~tr~~~v~~lw~YIk~h~lq~~~nkr~I~~D~~L~~v~g~~p 181 (237)
T COG5531 108 KKKKSSTI------SKNSPSGEKVKLSPKLAAILGLEPGTRPEAVKKLWKYIKKHNLQDPNNKRLILCDSKLKKVLGSDP 181 (237)
T ss_pred cccccccc------ccccCCCCceecCHHHHHHhCCCCCCccHHHHHHHHHHHHhcCCCccccceecccHHHHHHhCCCc
Confidence 88777643 233446779999999999999999999999999999999999999999999999999999999889
Q ss_pred cccccHHHHhhcCCCCCCCceEeEEEEee
Q psy18120 361 MKFAEIPQRLNPLLHPPDPIVINHIIRYL 389 (392)
Q Consensus 361 i~f~eI~~lL~~HL~P~~PI~I~YtIrv~ 389 (392)
+.|++|.+.|.+|| |+|+|+|+
T Consensus 182 ~~mf~~~k~l~~hl-------~~~~~~vs 203 (237)
T COG5531 182 IDMFELTKPLSPHL-------IKYTIDVS 203 (237)
T ss_pred hhhhhhhcccccce-------ecCccccc
Confidence 99999986666665 55665554
No 3
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=99.88 E-value=3.1e-23 Score=166.52 Aligned_cols=76 Identities=42% Similarity=0.676 Sum_probs=74.0
Q ss_pred CCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCCC
Q psy18120 301 PLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHP 376 (392)
Q Consensus 301 P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~P 376 (392)
+++|+||++|++|+|..+.||++|+++||+|||.|||||++|++.|+||+.|++|||++++.|++|+++|++||.|
T Consensus 2 ~~~~~ls~~L~~~lg~~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~~~~v~~~~~~~ll~~Hl~~ 77 (77)
T smart00151 2 TKKVTLSPELAKVLGAPEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGKDRMDMFEMNKLLTPHLIK 77 (77)
T ss_pred CCcccCCHHHHHHhCCCcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHCcCeecHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999975
No 4
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=99.87 E-value=1.2e-23 Score=168.50 Aligned_cols=74 Identities=41% Similarity=0.792 Sum_probs=70.6
Q ss_pred CCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCC
Q psy18120 301 PLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLL 374 (392)
Q Consensus 301 P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL 374 (392)
|++|+||++|++++|..++||++|+++||+|||.|||||++|++.|+||+.|++|||++++.|++|+++|++||
T Consensus 2 ~k~~~ls~~L~~~lg~~~~sr~~v~~~lw~YIk~~~L~dp~~k~~I~cD~~L~~lf~~~~v~~~~i~~~l~~hl 75 (76)
T PF02201_consen 2 PKRFKLSPELAEFLGEDELSRSEVVKRLWQYIKENNLQDPKDKRIIICDEKLKKLFGKDSVNFFEIPKLLKPHL 75 (76)
T ss_dssp EEEEHHHHHHHHHTT-SCEEHHHHHHHHHHHHHHTTSBESSSTTEEE-TTSHHHHHHTSECSEEETTHHHHHHH
T ss_pred CCCccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCCcccCceEecCHHHHHHhCCCeecHhhHHHHHHHhc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999997
No 5
>KOG1946|consensus
Probab=99.75 E-value=1.2e-18 Score=166.75 Aligned_cols=80 Identities=30% Similarity=0.539 Sum_probs=76.3
Q ss_pred CcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCCCCCCce
Q psy18120 302 LQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIV 381 (392)
Q Consensus 302 ~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~P~~PI~ 381 (392)
+.+.||+.|++++|.++.+|.+|++.||+|||+||||||.|++.|.||+.|+.|||..+|.+++|.++|.+||.......
T Consensus 102 kl~~ls~~L~~~~G~~~lsR~~vvk~iw~YIke~nLqDP~nkr~IlCDekL~~iF~~k~v~~fem~KLL~~H~~~~~d~~ 181 (240)
T KOG1946|consen 102 KLIPLSPSLARFVGTSELSRTDVVKKIWAYIKEHNLQDPKNKREILCDEKLKSIFGKKRVGMFEMLKLLTKHFLKNQDMV 181 (240)
T ss_pred cccccCHHHHhhcccccccHHHHHHHHHHHHHHhccCCccccCeeeeHHHHHHHhccCccceeeHHHHHHHhccCccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999887653
No 6
>PRK14724 DNA topoisomerase III; Provisional
Probab=99.68 E-value=2.4e-17 Score=184.09 Aligned_cols=73 Identities=29% Similarity=0.525 Sum_probs=71.7
Q ss_pred cccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCC
Q psy18120 303 QFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLH 375 (392)
Q Consensus 303 r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~ 375 (392)
.|+|||+||+|||..++||++||++||+|||.||||||+|++.|+||+.|+.|||++++.|++|+++|++||.
T Consensus 915 ~~~ls~~La~~lg~~~~~r~~v~~~lW~YIK~~~Lqdp~~k~~i~cD~~L~~vfg~~~~~~~~~~~~l~~hl~ 987 (987)
T PRK14724 915 GLKPSAALAAVIGAEPVARPEVIKKLWDYIKANNLQDPADKRAINADAKLRPVFGKDQVTMFELAGIVGKHLS 987 (987)
T ss_pred ccCCCHHHHHHhCCCcCCHHHHHHHHHHHHHHccCCCcccCCeeccchHHHHHhCCCcccHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999984
No 7
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=99.14 E-value=2.5e-11 Score=134.81 Aligned_cols=74 Identities=22% Similarity=0.413 Sum_probs=71.6
Q ss_pred CcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCC
Q psy18120 302 LQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLH 375 (392)
Q Consensus 302 ~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~ 375 (392)
..|.+|++|+.++|..+.+|.++++.||+|||.|+|||+++++.|+||+.|+++||++.+.|++++++|+.||.
T Consensus 786 ~~~~~S~~La~~~g~~~~sr~~~~~~lw~yIk~~~lqdp~~Kr~i~~d~kl~kvf~~~~~~~~~~~k~l~~hl~ 859 (860)
T PRK06319 786 PLYTPSPALAAMIGAEPVGRGEATKKVWDYIKEHGLQSPENKKLIIPDSKLQGVIGPDPIDMFQLSKKLSQHLI 859 (860)
T ss_pred cccccccccccccCcCccCchHHHHHHHHHHHHhcccCccccccCCCchhhhhhhCcCccchhhhHHHHHhhhc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999985
No 8
>KOG1924|consensus
Probab=96.55 E-value=0.031 Score=61.88 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=18.3
Q ss_pred CCCcccCCHHHHHhhCCCccCHHHHHHHHHH
Q psy18120 300 QPLQFKLDPRLARLLGVHTQTRPVIISALWQ 330 (392)
Q Consensus 300 ~P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~ 330 (392)
+|...+.-.+|+.+.-.+..+-.+|-+.+-+
T Consensus 875 ypd~l~F~ddl~hv~kaSrvnad~ikK~~~~ 905 (1102)
T KOG1924|consen 875 YPDILKFPDDLEHVEKASRVNADEIKKNLQQ 905 (1102)
T ss_pred ChhhhcchhhHHHHHhhccccHHHHHHHHHH
Confidence 5666666667777665555555555444443
No 9
>KOG1924|consensus
Probab=95.35 E-value=0.057 Score=59.93 Aligned_cols=16 Identities=38% Similarity=0.384 Sum_probs=9.9
Q ss_pred cccceEEEEEEEeecC
Q psy18120 159 KQKRKLRIFISNTFYP 174 (392)
Q Consensus 159 k~kR~LRIfIsNT~~~ 174 (392)
|..+-|||.=|-|+.|
T Consensus 688 Kk~kel~ilDsKtaQn 703 (1102)
T KOG1924|consen 688 KKVKELRILDSKTAQN 703 (1102)
T ss_pred hhhhhheecchHHHHH
Confidence 3445677777766643
No 10
>KOG2893|consensus
Probab=81.19 E-value=11 Score=37.20 Aligned_cols=7 Identities=43% Similarity=0.368 Sum_probs=2.8
Q ss_pred EEEEeec
Q psy18120 292 TILLLLD 298 (392)
Q Consensus 292 tI~L~~d 298 (392)
|++++.|
T Consensus 313 tklihpd 319 (341)
T KOG2893|consen 313 TKLIHPD 319 (341)
T ss_pred eeeeCCc
Confidence 3444333
No 11
>KOG0487|consensus
Probab=72.79 E-value=4.2 Score=41.23 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=38.2
Q ss_pred CCcccccCCccccCCchHHHhhcccHHHHHHHHHHHHH--HHHHHHH-hhhhHHHHhcCCccccceEEEEEEEe
Q psy18120 101 PGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERK--LDSTIMR-KRLDIQEALKRPMKQKRKLRIFISNT 171 (392)
Q Consensus 101 ~~~~~k~rKptDk~iP~~v~~lvPes~~Y~~L~d~Err--LD~tI~R-KrlDiqesl~rp~k~kR~LRIfIsNT 171 (392)
..+.||||+|.-|. |++|+|++ ...+|+| ||++|.-.|+-. -|-.-||..|-
T Consensus 232 ~~~~RKKRcPYTK~----------------QtlELEkEFlfN~YitkeKR~ElSr~lNLT---eRQVKIWFQNR 286 (308)
T KOG0487|consen 232 ARRGRKKRCPYTKH----------------QTLELEKEFLFNMYITKEKRLELSRTLNLT---ERQVKIWFQNR 286 (308)
T ss_pred ccccccccCCchHH----------------HHHHHHHHHHHHHHHhHHHHHHHHHhcccc---hhheeeeehhh
Confidence 45689999997663 67888887 5888887 788999888743 34555776664
No 12
>KOG2522|consensus
Probab=71.47 E-value=4 Score=43.35 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=44.2
Q ss_pred CccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCC---------CccccccHHHHhhcCCCC
Q psy18120 317 HTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSC---------PRMKFAEIPQRLNPLLHP 376 (392)
Q Consensus 317 ~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~---------~~i~f~eI~~lL~~HL~P 376 (392)
.-.|-++|-..+-+||+.|||-|..||..|+.|..|-..... .......|..++..-|.|
T Consensus 380 ~lyt~seir~~V~kYi~knnLad~~nKg~VrLDpILfd~~~k~~K~~~a~~~~~pw~~l~~~~~~rmtp 448 (560)
T KOG2522|consen 380 TLYTSSEIRSAVSKYISKNNLADTKNKGKVRLDPILFDMVNKKKKVLNASRIIAPWEILHPLLTNRMTP 448 (560)
T ss_pred ceeeHHHHHHHHHHHhhhhhccccccCCcEEeccHHHHHHHhhhhccccccccccHHHHHHHHHhcCCc
Confidence 346789999999999999999999999999988887655532 223444555555554444
No 13
>KOG0428|consensus
Probab=52.26 E-value=17 Score=36.04 Aligned_cols=56 Identities=29% Similarity=0.548 Sum_probs=41.3
Q ss_pred CCceeEeccC---CCCCCCCCc--------------------eeecCCCceeeEEEEEeec-CCCCcc----cCCHHHHH
Q psy18120 261 DNHLVEWHRT---PTTQETDGF--------------------QVKRPGDKNVRCTILLLLD-YQPLQF----KLDPRLAR 312 (392)
Q Consensus 261 ~~~~VEW~k~---~~~~efDGf--------------------eiKR~G~~nv~~tI~L~~d-~~P~r~----kLSpeLa~ 312 (392)
+.|++|||.+ +...+|+|= -..-+|-.+++-+|.|-+. |+|+.. .+-..|-.
T Consensus 36 EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlA 115 (314)
T KOG0428|consen 36 EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFEVNKKICLSISGYHPETWQPSWSIRTALLA 115 (314)
T ss_pred hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCceeeCceEEEEecCCCccccCcchhHHHHHHH
Confidence 5689999974 566788762 2334688899999999887 668864 45578888
Q ss_pred hhCC
Q psy18120 313 LLGV 316 (392)
Q Consensus 313 ~LG~ 316 (392)
+||.
T Consensus 116 lIgF 119 (314)
T KOG0428|consen 116 LIGF 119 (314)
T ss_pred HHcc
Confidence 8873
No 14
>PRK05350 acyl carrier protein; Provisional
Probab=50.67 E-value=8.4 Score=30.79 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=44.4
Q ss_pred cCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCC
Q psy18120 319 QTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLH 375 (392)
Q Consensus 319 ~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~ 375 (392)
+||.++...|.++|... +- .+...|..|..|..-+|.|++.+.+|.-.|..+|.
T Consensus 2 m~~~~i~~~v~~ii~~~-~~--~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fg 55 (82)
T PRK05350 2 MTREEILERLRAILVEL-FE--IDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTG 55 (82)
T ss_pred CCHHHHHHHHHHHHHHH-hC--CCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHC
Confidence 68999999999999886 42 12346899999988889999999999998887764
No 15
>KOG4594|consensus
Probab=50.32 E-value=94 Score=31.65 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=5.6
Q ss_pred CCCCCCCCCC
Q psy18120 74 PNIANKRPSD 83 (392)
Q Consensus 74 ~~~~~~~~~~ 83 (392)
|.+...|+-+
T Consensus 206 mg~~~~rp~~ 215 (354)
T KOG4594|consen 206 MGPGGGRPWP 215 (354)
T ss_pred cccccCCCCC
Confidence 5665566553
No 16
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=49.27 E-value=29 Score=28.51 Aligned_cols=61 Identities=21% Similarity=0.417 Sum_probs=38.2
Q ss_pred ccceeecCcccccCCCCCccccccccccchheEEEcccCCCCCCCceeEeccCCCCCCCCCceeecCCCceeeEEEEEee
Q psy18120 218 SWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLL 297 (392)
Q Consensus 218 sWtLrIeGrlL~d~~~d~~~~~~KFSsFfksI~VelD~~l~~p~~~~VEW~k~~~~~efDGfeiKR~G~~nv~~tI~L~~ 297 (392)
.||+.|-| +++ . ..|+|+++++..|.+...+| ...=+++ =|+|.+.|=-...+.|.+++
T Consensus 3 ~W~v~Vr~--~~~--------~-d~~~~i~kV~f~LHpsF~~p---~r~v~~p-------PFevte~GWGeF~i~I~i~f 61 (84)
T PF03366_consen 3 KWTVYVRG--LDN--------E-DLSYFIKKVTFKLHPSFPNP---VRVVTKP-------PFEVTETGWGEFEIPIKIHF 61 (84)
T ss_dssp EEEEEEEE--CCC--------T---TTTEEEEEEES-TTSSS----EEECSST-------TEEEEEEESS--EEEEEEEC
T ss_pred EEEEEEEe--CCC--------C-CccceEEEEEEECCCCCCCC---ceEecCC-------CCEEEEeEeccEEEEEEEEE
Confidence 58888855 222 1 47999999999999765421 2222222 48999998777777888777
Q ss_pred cC
Q psy18120 298 DY 299 (392)
Q Consensus 298 d~ 299 (392)
..
T Consensus 62 ~~ 63 (84)
T PF03366_consen 62 KD 63 (84)
T ss_dssp CC
T ss_pred eC
Confidence 76
No 17
>KOG1923|consensus
Probab=42.43 E-value=1e+02 Score=35.12 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=17.1
Q ss_pred ccccCCccccCCch-HHHhhcccHHHHHHHHHHHHHHHHHHHHh
Q psy18120 104 IKKKKKLADKILPQ-KVRDLVPESQAYMDLLAFERKLDSTIMRK 146 (392)
Q Consensus 104 ~~k~rKptDk~iP~-~v~~lvPes~~Y~~L~d~ErrLD~tI~RK 146 (392)
.-||.-||-..+|- -..++-|.-.. . -.|+.-+|++|.++
T Consensus 360 ~ik~~~~tk~~~p~lnW~alKP~qv~--~-tvf~~~~De~Il~~ 400 (830)
T KOG1923|consen 360 TIKKPTPTKTKSPSLNWLALKPIQVK--G-TVFHELNDEKILEA 400 (830)
T ss_pred hhcCCCcccccCCCccccccCccccc--c-chhhhhhHHHHHHh
Confidence 44555555544443 12333342111 0 33444456666653
No 18
>KOG2893|consensus
Probab=42.42 E-value=3.7e+02 Score=26.95 Aligned_cols=6 Identities=33% Similarity=0.977 Sum_probs=2.4
Q ss_pred CCCCCC
Q psy18120 38 RPGFTP 43 (392)
Q Consensus 38 ~~~~~~ 43 (392)
.+||++
T Consensus 162 p~g~pp 167 (341)
T KOG2893|consen 162 PRGYPP 167 (341)
T ss_pred CCCCCC
Confidence 344443
No 19
>KOG4849|consensus
Probab=40.46 E-value=1.7e+02 Score=30.68 Aligned_cols=10 Identities=0% Similarity=-0.187 Sum_probs=5.1
Q ss_pred cCCCCCCCCC
Q psy18120 4 RFQGSQNTNQ 13 (392)
Q Consensus 4 ~~~~~~~~~~ 13 (392)
||++..|.+|
T Consensus 206 ~~~~~sG~~G 215 (498)
T KOG4849|consen 206 TGTSVSGRSG 215 (498)
T ss_pred cCCCCCCCCC
Confidence 5666444444
No 20
>KOG0307|consensus
Probab=40.16 E-value=4.6e+02 Score=31.16 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy18120 130 MDLLAFERKLDSTIMR 145 (392)
Q Consensus 130 ~~L~d~ErrLD~tI~R 145 (392)
++|.|.+|||-.+-.|
T Consensus 972 rkl~d~~kRL~~L~~~ 987 (1049)
T KOG0307|consen 972 RKLKDVTKRLEILFDK 987 (1049)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 21
>PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function.
Probab=38.83 E-value=32 Score=34.35 Aligned_cols=44 Identities=16% Similarity=0.434 Sum_probs=31.3
Q ss_pred EEEcccCCCCCCCceeEeccCCCCCCCCCceeecC--CCceeeEEEEEee
Q psy18120 250 VIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRP--GDKNVRCTILLLL 297 (392)
Q Consensus 250 ~VelD~~l~~p~~~~VEW~k~~~~~efDGfeiKR~--G~~nv~~tI~L~~ 297 (392)
.|+||.. .+++|+|.++....++||+|+|=- |--++.-.+..+.
T Consensus 3 l~~FD~k----~Gn~i~W~~~~~~i~L~gVEfKsLPSGlH~v~~D~VyF~ 48 (280)
T PF09804_consen 3 LVKFDVK----KGNTIVWSRPAPDIDLEGVEFKSLPSGLHEVDEDVVYFV 48 (280)
T ss_pred EEEecCC----CCcEEEEeccCCCCccCCeeEecCCcccccccccEEEEe
Confidence 4778753 358999999877789999999974 6555544444444
No 22
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=35.09 E-value=44 Score=25.48 Aligned_cols=42 Identities=24% Similarity=0.353 Sum_probs=31.4
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecch-hHH
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDK-FFE 353 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe-~Lr 353 (392)
.+||+++|++..|-..+++ -.+..|+.+-..+.++..|. .|+
T Consensus 32 ~~iA~~~g~sr~tv~r~l~----~l~~~g~I~~~~~~i~I~d~~~L~ 74 (76)
T PF13545_consen 32 EEIADMLGVSRETVSRILK----RLKDEGIIEVKRGKIIILDPERLE 74 (76)
T ss_dssp HHHHHHHTSCHHHHHHHHH----HHHHTTSEEEETTEEEESSHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH----HHHHCCCEEEcCCEEEECCHHHHh
Confidence 5899999998877555554 55778888888888888883 443
No 23
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=34.37 E-value=93 Score=23.98 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=23.4
Q ss_pred cCCCCcccCCHHHH-HhhC-CCccCHHHHHHHHHHHHHhc
Q psy18120 298 DYQPLQFKLDPRLA-RLLG-VHTQTRPVIISALWQYIKTH 335 (392)
Q Consensus 298 d~~P~r~kLSpeLa-~~LG-~~e~TR~eiv~aLW~YIK~n 335 (392)
...+..+-.+...| +.|| ..+-+..+++...|++.+.|
T Consensus 19 ~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~n 58 (62)
T PF13950_consen 19 PGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKN 58 (62)
T ss_dssp TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHS
T ss_pred CCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHC
Confidence 33344445555555 7888 45669999999999999887
No 24
>PRK05828 acyl carrier protein; Validated
Probab=32.08 E-value=37 Score=27.77 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=41.7
Q ss_pred cCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCC
Q psy18120 319 QTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLH 375 (392)
Q Consensus 319 ~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~ 375 (392)
+||.+|+..|=+-|...++.-+ ...|.+|..|.. +|-|++.+.+|...|...+.
T Consensus 1 m~~~eI~~~i~~ii~e~~~~~~--~d~i~~~~~~~d-Lg~DSLd~velv~~lE~~f~ 54 (84)
T PRK05828 1 MQEMEILLKIKEIAKKKNFAVT--LDESNINKPYRE-LKIDSLDMFSIIVSLESEFN 54 (84)
T ss_pred CCHHHHHHHHHHHHHHhccCCC--cccccCCCCHHh-cCCCHHHHHHHHHHHHHHHC
Confidence 6899999999999987554322 234677888877 89999999998888876653
No 25
>PF07898 DUF1676: Protein of unknown function (DUF1676); InterPro: IPR012464 This family contains sequences derived from proteins of unknown function expressed by Drosophila melanogaster and Anopheles gambiae.
Probab=31.48 E-value=40 Score=27.83 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCCCceeecCCCceeeEEEEEeecCCCCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCC
Q psy18120 275 ETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQ 338 (392)
Q Consensus 275 efDGfeiKR~G~~nv~~tI~L~~d~~P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQ 338 (392)
=+||+.|.|.++.+....- +.-...++.-. ..+.--.-+..++|.|+..|.|+
T Consensus 17 l~dgv~lvr~~~~~~~~~~-------~~~~~~~~~~~----~~~~l~~~l~~k~~~fl~th~L~ 69 (106)
T PF07898_consen 17 LTDGVSLVRNPEAAERSSE-------AESRSVDEEDS----REEELDNLLLDKVERFLQTHSLR 69 (106)
T ss_pred ecCCEEEEECCCCcccccc-------ccccccccccc----hhhHHHHHHHHHHHHHHHhceEE
Confidence 3799999999876443211 11111111100 12222345788999999999987
No 26
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=31.18 E-value=52 Score=29.18 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=33.0
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhh
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQI 355 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~L 355 (392)
.+||++||++..|-..+++. .+..|+..-..++++++| +.|++.
T Consensus 147 ~~iA~~lG~tretvsR~l~~----l~~~g~I~~~~~~i~I~d~~~L~~~ 191 (193)
T TIGR03697 147 QAIAEAIGSTRVTITRLLGD----LRKKKLISIHKKKITVHDPIALGQR 191 (193)
T ss_pred HHHHHHhCCcHHHHHHHHHH----HHHCCCEEecCCEEEEeCHHHHHHh
Confidence 69999999887766666654 577898888778888888 445443
No 27
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=31.03 E-value=57 Score=29.31 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=35.9
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCC
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSC 358 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~ 358 (392)
.+||++||++..|-+.+++.| +..||.+-+.+.++++| +.|+++.++
T Consensus 153 ~~iA~~lG~tretvsR~l~~l----~~~g~I~~~~~~i~I~d~~~L~~~~~~ 200 (202)
T PRK13918 153 DELAAAVGSVRETVTKVIGEL----SREGYIRSGYGKIQLLDLKGLEELAES 200 (202)
T ss_pred HHHHHHhCccHHHHHHHHHHH----HHCCCEEcCCCEEEEECHHHHHHHHhc
Confidence 499999999988777777654 57899987777788887 466666543
No 28
>KOG4849|consensus
Probab=30.63 E-value=3.1e+02 Score=28.87 Aligned_cols=13 Identities=8% Similarity=0.061 Sum_probs=5.7
Q ss_pred ccccCCccccCCc
Q psy18120 104 IKKKKKLADKILP 116 (392)
Q Consensus 104 ~~k~rKptDk~iP 116 (392)
..+.+-|.+.-=|
T Consensus 335 ~~~~~pPyn~~~~ 347 (498)
T KOG4849|consen 335 NTAMRPPYNGLPP 347 (498)
T ss_pred ccCCCCCCCCCCc
Confidence 3444444444333
No 29
>KOG1984|consensus
Probab=26.08 E-value=6.4e+02 Score=29.66 Aligned_cols=7 Identities=43% Similarity=0.311 Sum_probs=3.7
Q ss_pred CCCcCCC
Q psy18120 1 MSQRFQG 7 (392)
Q Consensus 1 ~~~~~~~ 7 (392)
|+|-|++
T Consensus 1 ~~~~~pp 7 (1007)
T KOG1984|consen 1 MSQGVPP 7 (1007)
T ss_pred CCCCCCC
Confidence 4555554
No 30
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=25.38 E-value=56 Score=26.74 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=21.1
Q ss_pred CcccCCHHHHHhhCCCccCHHHHHHHHHHHHHh
Q psy18120 302 LQFKLDPRLARLLGVHTQTRPVIISALWQYIKT 334 (392)
Q Consensus 302 ~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~ 334 (392)
..|---++||+-||+++. +||++|+.
T Consensus 17 ~~~~SGe~La~~LgiSRt-------aVwK~Iq~ 42 (79)
T COG1654 17 GNFVSGEKLAEELGISRT-------AVWKHIQQ 42 (79)
T ss_pred CCcccHHHHHHHHCccHH-------HHHHHHHH
Confidence 345556899999999886 89999976
No 31
>KOG3895|consensus
Probab=25.13 E-value=4.4e+02 Score=27.94 Aligned_cols=8 Identities=25% Similarity=0.306 Sum_probs=4.6
Q ss_pred CCCcCCCC
Q psy18120 1 MSQRFQGS 8 (392)
Q Consensus 1 ~~~~~~~~ 8 (392)
|||+....
T Consensus 390 maq~l~~~ 397 (488)
T KOG3895|consen 390 MAQLLTRP 397 (488)
T ss_pred hhhccCCC
Confidence 56666543
No 32
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=24.34 E-value=1.2e+02 Score=20.41 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=19.3
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCC
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQ 338 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQ 338 (392)
.++|+++|++.. .||.|++...+.
T Consensus 4 ~e~a~~lgvs~~-------tl~~~~~~g~~~ 27 (49)
T cd04762 4 KEAAELLGVSPS-------TLRRWVKEGKLK 27 (49)
T ss_pred HHHHHHHCcCHH-------HHHHHHHcCCCC
Confidence 578999998876 789999987654
No 33
>CHL00124 acpP acyl carrier protein; Validated
Probab=23.15 E-value=47 Score=26.16 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=41.6
Q ss_pred cCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCC
Q psy18120 319 QTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLH 375 (392)
Q Consensus 319 ~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~ 375 (392)
|||.+|...|=++|...-=.++ ..|..|..|...+|-|++.+.+|...|...|.
T Consensus 1 M~~~~i~~~l~~ii~~~~~~~~---~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~ 54 (82)
T CHL00124 1 MTKNDIFEKVQSIVAEQLGIEK---SEVTLDANFTRDLGADSLDVVELVMAIEEKFD 54 (82)
T ss_pred CCHHHHHHHHHHHHHHHHCCCH---HHCCCCcchhhhcCCcHHHHHHHHHHHHHHHC
Confidence 5788888888888877632233 34999999999899999999998888876543
No 34
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=22.42 E-value=1.1e+02 Score=28.37 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=33.1
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcC
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFS 357 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg 357 (392)
.+||++||+...|-..+++. .+.+|| .-..+.+.++| +.|+++.+
T Consensus 177 ~~iA~~lG~tretvsR~l~~----L~~~gl-~~~~~~i~I~d~~~L~~~~~ 222 (236)
T PRK09392 177 RVLASYLGMTPENLSRAFAA----LASHGV-HVDGSAVTITDPAGLARFAK 222 (236)
T ss_pred HHHHHHhCCChhHHHHHHHH----HHhCCe-EeeCCEEEEcCHHHHHHhhc
Confidence 59999999988887777666 567777 45556777777 56776655
No 35
>PF06668 ITI_HC_C: Inter-alpha-trypsin inhibitor heavy chain C-terminus; InterPro: IPR010600 This entry represents the C-terminal region of inter-alpha-trypsin inhibitor heavy chains. Inter-alpha-trypsin inhibitors are glycoproteins with a high inhibitory activity against trypsin, built up from different combinations of four polypeptides: bikunin and the three heavy chains that belong to this family (HC1, HC2, HC3). The heavy chains do not have any protease inhibitory properties but have the capacity to interact in vitro and in vivo with hyaluronic acid, which promotes the stability of the extra-cellular matrix. This domain is associated with the VWA domain IPR002035 from INTERPRO.; GO: 0004867 serine-type endopeptidase inhibitor activity, 0030212 hyaluronan metabolic process
Probab=22.07 E-value=2.8e+02 Score=26.13 Aligned_cols=91 Identities=25% Similarity=0.448 Sum_probs=53.6
Q ss_pred eeecCcccccCCCCCccccccccccchheEEEcccCC-------------CCCCCceeEeccCCCCCCCCCceeecCCCc
Q psy18120 221 LRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDL-------------YGPDNHLVEWHRTPTTQETDGFQVKRPGDK 287 (392)
Q Consensus 221 LrIeGrlL~d~~~d~~~~~~KFSsFfksI~VelD~~l-------------~~p~~~~VEW~k~~~~~efDGfeiKR~G~~ 287 (392)
+.|.|.|+.+.+.. . ..|...||..|.|-+++.. .+......-|+++. ....+|++|.=....
T Consensus 4 i~VnGqliGak~~~--~-~~~~~TYF~~i~I~~~~~~~~I~vt~~~I~l~~g~~~~~l~w~~t~-~~~~~~l~v~v~k~~ 79 (188)
T PF06668_consen 4 ITVNGQLIGAKKPP--G-EKKLRTYFGRIGITFQKPDVKIEVTPEKITLTDGRRRSVLSWSDTA-SVKQPGLEVSVNKNK 79 (188)
T ss_pred EEEeCEEccCCCCC--C-CCCCCceEEEEEEEECCCCeEEEEEccEEEEecCCCceeEeEcceE-EEccCcEEEEEECCc
Confidence 45789998875321 1 5688999999999998631 12334566676643 223466665533333
Q ss_pred --------eeeEEEEEeecCCCCc-------------ccCCHHHHHhhC
Q psy18120 288 --------NVRCTILLLLDYQPLQ-------------FKLDPRLARLLG 315 (392)
Q Consensus 288 --------nv~~tI~L~~d~~P~r-------------~kLSpeLa~~LG 315 (392)
++...|+|+.-..|.. -.||+.--.+||
T Consensus 80 ~l~v~~~~~v~F~Il~Hr~~~~~~~~~d~LGfYi~ds~~lS~~vhGLLG 128 (188)
T PF06668_consen 80 NLTVTLGDGVTFVILLHRVWKKHPYQRDFLGFYILDSHGLSPSVHGLLG 128 (188)
T ss_pred eEEEEeCCceEEEEEEEeecCCCCCCCCeeEEEecCCCCCCCccccccc
Confidence 4455566664333332 256666666666
No 36
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=21.87 E-value=31 Score=25.15 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=25.6
Q ss_pred HHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCcee
Q psy18120 309 RLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFI 346 (392)
Q Consensus 309 eLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I 346 (392)
+||+.+|+...+-..++..|-+.=-...-.|++|+|.|
T Consensus 22 ~la~~~~~~~~~~t~~i~~L~~~g~I~r~~~~~D~R~v 59 (59)
T PF01047_consen 22 ELAEKLGISRSTVTRIIKRLEKKGLIERERDPDDRRQV 59 (59)
T ss_dssp HHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTETTSE
T ss_pred HHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCCcC
Confidence 89999999888888888777653333344467776643
No 37
>KOG0921|consensus
Probab=20.64 E-value=1.7e+02 Score=34.41 Aligned_cols=10 Identities=40% Similarity=0.604 Sum_probs=5.8
Q ss_pred CCCCCCCCCC
Q psy18120 60 QPPYTGMRPS 69 (392)
Q Consensus 60 ~~~~~~~~~~ 69 (392)
+|||||.+++
T Consensus 1205 sGGYGgsa~~ 1214 (1282)
T KOG0921|consen 1205 SGGYGGSAPS 1214 (1282)
T ss_pred CCCCCCCCCC
Confidence 4557775543
No 38
>PRK12449 acyl carrier protein; Provisional
Probab=20.50 E-value=86 Score=24.50 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=39.8
Q ss_pred cCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCC
Q psy18120 319 QTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLL 374 (392)
Q Consensus 319 ~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL 374 (392)
+||.+|...|=+++...-=.++ ..|..|..|..-+|.|++.+.+|...|...|
T Consensus 1 m~~~~i~~~l~~il~~~~~~~~---~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f 53 (80)
T PRK12449 1 MTREEIFERLINLIQKQRSYLS---LAITEQTHLKDDLAVDSIELVEFIINVEDEF 53 (80)
T ss_pred CCHHHHHHHHHHHHHHHhCCCc---cccCCCCcHHHHcCCcHHHHHHHHHHHHHHh
Confidence 4678888888888875321222 3489999999999999999999888886554
No 39
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=20.14 E-value=95 Score=21.09 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=19.7
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCC
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQ 338 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQ 338 (392)
.++|++||++.. .||++|+...|.
T Consensus 5 ~e~a~~lgis~~-------ti~~~~~~g~i~ 28 (49)
T TIGR01764 5 EEAAEYLGVSKD-------TVYRLIHEGELP 28 (49)
T ss_pred HHHHHHHCCCHH-------HHHHHHHcCCCC
Confidence 588999999876 689999887665
Done!