Query psy18120
Match_columns 392
No_of_seqs 205 out of 631
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 23:01:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uhr_A SWI/SNF related, matrix 100.0 5E-31 1.7E-35 217.9 4.4 88 296-383 4-91 (93)
2 1v31_A Hypothetical protein RA 100.0 2.6E-30 8.7E-35 213.6 6.7 87 297-383 5-91 (93)
3 1v32_A AT5G08430, hypothetical 99.9 3E-23 1E-27 173.8 6.9 74 305-378 15-94 (101)
4 3dac_M MDM4 protein; MDMX, MDM 96.5 0.0026 9E-08 54.9 4.8 75 304-378 25-108 (130)
5 1ycq_A MDM2, MDM2; anti-oncoge 96.0 0.016 5.6E-07 48.5 7.1 74 302-375 10-92 (107)
6 1z1m_A Ubiquitin-protein ligas 95.9 0.013 4.4E-07 49.9 5.9 71 303-373 27-103 (119)
7 2z5s_M MDM4 protein, zebrafish 95.8 0.012 4.2E-07 51.1 5.5 73 303-375 23-104 (140)
8 3fea_A MDM4 protein; HDMX, HDM 95.5 0.0094 3.2E-07 49.5 3.7 75 303-377 15-98 (100)
9 2axi_A Ubiquitin-protein ligas 95.1 0.019 6.3E-07 48.7 4.1 68 303-370 11-84 (115)
10 3qrl_A Transcription initiatio 52.4 43 0.0015 29.1 7.4 47 243-299 51-97 (140)
11 2kwl_A ACP, acyl carrier prote 39.1 15 0.00051 27.5 2.1 58 315-375 1-58 (84)
12 4dnn_A Protein quaking, MQKI, 39.1 25 0.00087 26.1 3.2 39 114-152 2-47 (56)
13 2zcw_A TTHA1359, transcription 36.5 25 0.00087 29.9 3.5 47 308-358 150-197 (202)
14 3e6c_C CPRK, cyclic nucleotide 30.7 38 0.0013 29.9 3.7 48 308-359 181-229 (250)
15 2fmy_A COOA, carbon monoxide o 30.4 37 0.0013 29.2 3.5 45 308-356 171-217 (220)
16 3b02_A Transcriptional regulat 26.9 40 0.0014 28.5 3.1 46 308-357 143-189 (195)
17 3e97_A Transcriptional regulat 26.5 45 0.0015 28.8 3.4 45 308-356 179-224 (231)
18 1ft9_A Carbon monoxide oxidati 25.2 58 0.002 28.0 3.8 46 308-357 167-214 (222)
19 3d0s_A Transcriptional regulat 24.6 44 0.0015 28.7 3.0 44 308-355 181-225 (227)
20 3la7_A Global nitrogen regulat 24.5 37 0.0013 29.9 2.5 45 308-356 197-242 (243)
21 2bgc_A PRFA; bacterial infecti 23.3 54 0.0019 28.7 3.3 47 308-358 173-221 (238)
22 2gau_A Transcriptional regulat 23.3 50 0.0017 28.5 3.1 45 308-356 184-229 (232)
No 1
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.96 E-value=5e-31 Score=217.93 Aligned_cols=88 Identities=72% Similarity=1.138 Sum_probs=86.6
Q ss_pred eecCCCCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCC
Q psy18120 296 LLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLH 375 (392)
Q Consensus 296 ~~d~~P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~ 375 (392)
++||+|++|+||++||+|||..++||++|+++||+|||.|||||++||+.|+||++|++|||+++|+|++|+++|++||.
T Consensus 4 ~~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~ 83 (93)
T 1uhr_A 4 GSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLM 83 (93)
T ss_dssp CCSSSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEE
T ss_pred ccccCCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEe
Q psy18120 376 PPDPIVIN 383 (392)
Q Consensus 376 P~~PI~I~ 383 (392)
|++||+|+
T Consensus 84 p~~PI~i~ 91 (93)
T 1uhr_A 84 PPEPSGPS 91 (93)
T ss_dssp CSSCCCSS
T ss_pred CCCCeeCC
Confidence 99999985
No 2
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.96 E-value=2.6e-30 Score=213.61 Aligned_cols=87 Identities=36% Similarity=0.720 Sum_probs=85.2
Q ss_pred ecCCCCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCCC
Q psy18120 297 LDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHP 376 (392)
Q Consensus 297 ~d~~P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~P 376 (392)
++|+|++|+||++||+|||..++||++|+++||+|||.|||||++||+.|+||++|++|||+++|.|++|+++|++||.|
T Consensus 5 ~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p 84 (93)
T 1v31_A 5 SSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSP 84 (93)
T ss_dssp CCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBC
T ss_pred CCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEe
Q psy18120 377 PDPIVIN 383 (392)
Q Consensus 377 ~~PI~I~ 383 (392)
++||+|+
T Consensus 85 ~~Pi~~~ 91 (93)
T 1v31_A 85 PPPSGPS 91 (93)
T ss_dssp CCCSSCC
T ss_pred CCCeeCC
Confidence 9999985
No 3
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.88 E-value=3e-23 Score=173.80 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=70.5
Q ss_pred cCCHHHHHhh---CC---CccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCCCCC
Q psy18120 305 KLDPRLARLL---GV---HTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPD 378 (392)
Q Consensus 305 kLSpeLa~~L---G~---~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~P~~ 378 (392)
-+|++||+|| |. .++||++|+++||+|||.||||||+||+.|+||++|++|||+++|.|++|+++|++||.+.+
T Consensus 15 w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~~ 94 (101)
T 1v32_A 15 WGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQ 94 (101)
T ss_dssp SSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSCC
T ss_pred cCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCccc
Confidence 4799999999 88 57999999999999999999999999999999999999999999999999999999998753
No 4
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.48 E-value=0.0026 Score=54.85 Aligned_cols=75 Identities=17% Similarity=0.265 Sum_probs=65.1
Q ss_pred ccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCCcccccc---HHHHhhcCC
Q psy18120 304 FKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCPRMKFAE---IPQRLNPLL 374 (392)
Q Consensus 304 ~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~~i~f~e---I~~lL~~HL 374 (392)
++-.++|-.|| | ....|..+++.-|=+||-.+.|.|+.+..+|.|- +.|.++||+++|.+.+ |.+.|.++|
T Consensus 25 Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NL 104 (130)
T 3dac_M 25 VHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNL 104 (130)
T ss_dssp EEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhhe
Confidence 55667788877 4 4678999999999999999999999999999995 6788999999999999 999999988
Q ss_pred CCCC
Q psy18120 375 HPPD 378 (392)
Q Consensus 375 ~P~~ 378 (392)
.+.-
T Consensus 105 v~~~ 108 (130)
T 3dac_M 105 VILN 108 (130)
T ss_dssp EEC-
T ss_pred eccc
Confidence 7643
No 5
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=96.02 E-value=0.016 Score=48.49 Aligned_cols=74 Identities=24% Similarity=0.340 Sum_probs=61.0
Q ss_pred CcccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCCccccccHH---HHhhc
Q psy18120 302 LQFKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCPRMKFAEIP---QRLNP 372 (392)
Q Consensus 302 ~r~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~~i~f~eI~---~lL~~ 372 (392)
..++-.+.|..+| | ...-|+.+|+.-|=+||-.+.|.|+.+..+|.|. +.|-++||++.|.+.+.. +.|.+
T Consensus 10 ~~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~ 89 (107)
T 1ycq_A 10 KLVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISR 89 (107)
T ss_dssp CCBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHT
T ss_pred cccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHH
Confidence 3566677888887 3 3578999999999999999999999999999996 667999999999988866 55555
Q ss_pred CCC
Q psy18120 373 LLH 375 (392)
Q Consensus 373 HL~ 375 (392)
.|.
T Consensus 90 nLv 92 (107)
T 1ycq_A 90 NLV 92 (107)
T ss_dssp TEE
T ss_pred hcc
Confidence 443
No 6
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=95.87 E-value=0.013 Score=49.95 Aligned_cols=71 Identities=25% Similarity=0.435 Sum_probs=56.7
Q ss_pred cccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCCccccccHHHHhhcC
Q psy18120 303 QFKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCPRMKFAEIPQRLNPL 373 (392)
Q Consensus 303 r~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~~i~f~eI~~lL~~H 373 (392)
.++-.++|-.|| | ...-|..+|+.-|=+||-.+.|.|+.+..+|.|. +.|-++||++.|.+.|-..+..-|
T Consensus 27 ~VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml 103 (119)
T 1z1m_A 27 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMI 103 (119)
T ss_dssp CCCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHH
T ss_pred cccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHH
Confidence 445555566665 4 3568999999999999999999999999999996 667999999999988755544433
No 7
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=95.77 E-value=0.012 Score=51.07 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=61.0
Q ss_pred cccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCCccccccHH---HHhhcC
Q psy18120 303 QFKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCPRMKFAEIP---QRLNPL 373 (392)
Q Consensus 303 r~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~~i~f~eI~---~lL~~H 373 (392)
.++-.++|-.|| | ...-|+-+|+.-|=+||-.+.|.|+.+..+|.|. +.|-+||||+.|.+.+.. +.|.+-
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~N 102 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRN 102 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 567778888888 4 4678999999999999999999999999999996 667999999999988755 555544
Q ss_pred CC
Q psy18120 374 LH 375 (392)
Q Consensus 374 L~ 375 (392)
|.
T Consensus 103 Lv 104 (140)
T 2z5s_M 103 LV 104 (140)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 8
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=95.54 E-value=0.0094 Score=49.45 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=63.5
Q ss_pred cccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCCccccc---cHHHHhhcC
Q psy18120 303 QFKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCPRMKFA---EIPQRLNPL 373 (392)
Q Consensus 303 r~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~~i~f~---eI~~lL~~H 373 (392)
.++-.++|-.|| | ....|..+++.-|=+||-.+.|-|+.+..+|.|. +.|-++||+++|.+. .|.+.|.+|
T Consensus 15 ~Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~n 94 (100)
T 3fea_A 15 QVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKN 94 (100)
T ss_dssp CBEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhh
Confidence 466678888887 4 4678999999999999999999999999999996 678899999999988 688888888
Q ss_pred CCCC
Q psy18120 374 LHPP 377 (392)
Q Consensus 374 L~P~ 377 (392)
|...
T Consensus 95 Lv~~ 98 (100)
T 3fea_A 95 LVTL 98 (100)
T ss_dssp EEC-
T ss_pred ceec
Confidence 7543
No 9
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=95.05 E-value=0.019 Score=48.67 Aligned_cols=68 Identities=26% Similarity=0.450 Sum_probs=57.0
Q ss_pred cccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCCccccccHHHHh
Q psy18120 303 QFKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCPRMKFAEIPQRL 370 (392)
Q Consensus 303 r~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~~i~f~eI~~lL 370 (392)
.++-.+.|..|| | ...-|..+|+.-+=+||-.+.|.|+.+..+|.|. +.|-++|||+.|.+.+-..+.
T Consensus 11 ~VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~ 84 (115)
T 2axi_A 11 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIY 84 (115)
T ss_dssp EEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHH
T ss_pred ccCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHH
Confidence 456677788877 3 3567999999999999999999999999999996 667999999999988754443
No 10
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=52.39 E-value=43 Score=29.12 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=28.9
Q ss_pred cccchheEEEcccCCCCCCCceeEeccCCCCCCCCCceeecCCCceeeEEEEEeecC
Q psy18120 243 SSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDY 299 (392)
Q Consensus 243 SsFfksI~VelD~~l~~p~~~~VEW~k~~~~~efDGfeiKR~G~~nv~~tI~L~~d~ 299 (392)
++||++++..|..... .....| ... =|+|.+.|=-...+.|.|++..
T Consensus 51 ~~~i~kV~f~LH~sF~-np~r~v--~~p-------PF~v~e~GWGeF~i~I~i~f~~ 97 (140)
T 3qrl_A 51 ATIFDKVIYHLHPTFA-NPNRTF--TDP-------PFRIEEQGWGGFPLDISVFLLE 97 (140)
T ss_dssp CTTEEEEEEECCTTSS-SCEEEE--CST-------TCCEEEEESSCCCEEEEEEEGG
T ss_pred hheEEEEEEEeCCCCC-CCeEEE--cCC-------CcEEEEEEeeeEEEEEEEEEec
Confidence 4799999999987643 222233 222 3777777655555566665543
No 11
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=39.14 E-value=15 Score=27.53 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=44.3
Q ss_pred CCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCC
Q psy18120 315 GVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLH 375 (392)
Q Consensus 315 G~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~ 375 (392)
|...+|+.++...|.+.|...-=.+ ...|..|..|..-+|.|++.+.+|...|..+|-
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 58 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKK---EDEITTDSRFVEDLNADSLDIYELLYLLEEAFD 58 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCC---GGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCC---cccCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 5667899999999999887752123 245788999977789999998888888876543
No 12
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=39.13 E-value=25 Score=26.06 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=29.4
Q ss_pred CCchHHHhhcccHHHHHHH-------HHHHHHHHHHHHHhhhhHHH
Q psy18120 114 ILPQKVRDLVPESQAYMDL-------LAFERKLDSTIMRKRLDIQE 152 (392)
Q Consensus 114 ~iP~~v~~lvPes~~Y~~L-------~d~ErrLD~tI~RKrlDiqe 152 (392)
.+|+++.+|+-+-.....+ .-+||-||.-|.|-|.++-.
T Consensus 2 s~~eYL~qLlkdkk~l~~~Pn~~~iF~H~eRLldEEI~rVR~~Lfq 47 (56)
T 4dnn_A 2 STPDYLMQLMNDKKLMSSLPNFSGIFNHLERLLDEEISRVRKDMYN 47 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888655433333 44899999999999999875
No 13
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=36.50 E-value=25 Score=29.86 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=36.6
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCC
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSC 358 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~ 358 (392)
.+||++||++..|-..+++.| +..|+..-+.++++.+| +.|+++.+.
T Consensus 150 ~~lA~~lg~sr~tvsR~l~~L----~~~g~I~~~~~~i~i~d~~~L~~~~~~ 197 (202)
T 2zcw_A 150 DELAAAVGSVRETVTKVIGEL----AREGYIRSGYGKIQLLDLKGLKELAES 197 (202)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH----HHTTSEEEETTEEEESCHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHH----HHCCCEEeCCCEEEEeCHHHHHHHhcc
Confidence 489999999888777777765 78899887777888888 467776643
No 14
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=30.72 E-value=38 Score=29.91 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=36.7
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCC
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCP 359 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~ 359 (392)
.+||++||++..|-..+++ -.+..|+..-..++++..| +.|+++.+.+
T Consensus 181 ~~iA~~lG~sr~tvsR~l~----~L~~~g~I~~~~~~i~i~d~~~L~~~a~~~ 229 (250)
T 3e6c_C 181 KSIGEITGVHHVTVSRVLA----SLKRENILDKKKNKIIVYNLGELKHLSEQT 229 (250)
T ss_dssp HHHHHHHTCCHHHHHHHHH----HHHHTTSEEECSSEEEESCHHHHHHHHTSS
T ss_pred HHHHHHhCCcHHHHHHHHH----HHHHCCCeEeCCCEEEEecHHHHHHHHccC
Confidence 4899999998777666665 4567899888778887778 6788887654
No 15
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=30.38 E-value=37 Score=29.16 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=35.0
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcC-CCceeecc-hhHHhhc
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQDAH-EREFINCD-KFFEQIF 356 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~-dk~~I~cD-e~Lr~LF 356 (392)
.+||++||++..|-..+++.| +..|+..-. .+.++.+| +.|+++.
T Consensus 171 ~~lA~~lg~sr~tvsR~l~~l----~~~g~I~~~~~~~i~i~d~~~L~~~~ 217 (220)
T 2fmy_A 171 EEIALMLGTTRQTVSVLLNDF----KKMGILERVNQRTLLLKDLQKLKEFS 217 (220)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH----HHTTSEEESSSSEEEESCHHHHHHHC
T ss_pred HHHHHHhCCcHHHHHHHHHHH----HHCCCEEEcCCCEEEEcCHHHHHHHh
Confidence 589999999988888777765 788998876 67777777 4566654
No 16
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=26.88 E-value=40 Score=28.47 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=36.1
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecch-hHHhhcC
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDK-FFEQIFS 357 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe-~Lr~LFg 357 (392)
.+||++||++..|-..+++.| +..|+..-+.+.++.+|. .|+++.+
T Consensus 143 ~~lA~~lg~sr~tvsR~l~~L----~~~g~I~~~~~~i~i~d~~~L~~~~~ 189 (195)
T 3b02_A 143 EEIADATASIRESVSKVLADL----RREGLIATAYRRVYLLDLAALEREAG 189 (195)
T ss_dssp HHHHHTTTSCHHHHHHHHHHH----HHHTSEEEETTEEEECCHHHHHHHHC
T ss_pred HHHHHHhCCCHHHHHHHHHHH----HHCCCEEecCCEEEEeCHHHHHHHhc
Confidence 489999999888777777765 678888877778888884 6777764
No 17
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=26.52 E-value=45 Score=28.76 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=34.9
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecch-hHHhhc
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDK-FFEQIF 356 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe-~Lr~LF 356 (392)
.+||++||++..|-..+++.| +..|+.+-+.+.++.+|. .|+++-
T Consensus 179 ~~iA~~lg~sr~tvsR~l~~L----~~~g~I~~~~~~i~i~d~~~L~~~a 224 (231)
T 3e97_A 179 QDIMARTSSSRETVSRVLKRL----EAHNILEVSPRSVTLLDLAALEALS 224 (231)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH----HHTTSEEECSSCEEESCHHHHHHCC
T ss_pred HHHHHHhCCcHHHHHHHHHHH----HHCCcEEecCCEEEEeCHHHHHHHH
Confidence 589999999888777776654 788998887788888884 566654
No 18
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=25.15 E-value=58 Score=28.01 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=35.3
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCc-eeecc-hhHHhhcC
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHERE-FINCD-KFFEQIFS 357 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~-~I~cD-e~Lr~LFg 357 (392)
.+||++||++..|-..+++.| +..|+..-..++ ++..| +.|+++.+
T Consensus 167 ~~lA~~lG~sr~tvsR~l~~L----~~~g~I~~~~~~i~~i~d~~~L~~~~~ 214 (222)
T 1ft9_A 167 EEIANLIGSSRQTTSTALNSL----IKEGYISRQGRGHYTIPNLVRLKAAAD 214 (222)
T ss_dssp HHHHHHHCSCHHHHHHHHHHH----HHTTSSEECSTTCEECSSHHHHHHTC-
T ss_pred HHHHHHhCCcHHHHHHHHHHH----HHCCcEEEcCCceEEEcCHHHHHHHHh
Confidence 589999999988877777765 788998887777 45667 46777664
No 19
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=24.61 E-value=44 Score=28.73 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=34.4
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecch-hHHhh
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDK-FFEQI 355 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe-~Lr~L 355 (392)
.+||++||++..|-..+++.| +..|+.+-+.++++.+|. .|+++
T Consensus 181 ~~lA~~lg~sr~tvsR~l~~l----~~~g~I~~~~~~i~i~d~~~L~~~ 225 (227)
T 3d0s_A 181 EEIAQLVGASRETVNKALADF----AHRGWIRLEGKSVLISDSERLARR 225 (227)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH----HHTTSEEEETTEEEESCHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHH----HHCCCEEecCCEEEEcCHHHHHHh
Confidence 479999999988888777764 678888877778888884 56554
No 20
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=24.54 E-value=37 Score=29.94 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=30.1
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecch-hHHhhc
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDK-FFEQIF 356 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe-~Lr~LF 356 (392)
.+||++||++..|-..+++. .+..|+.+-..+++++.|. .|++.|
T Consensus 197 ~~lA~~lG~sr~tvsR~l~~----L~~~GlI~~~~~~i~I~d~~~L~~~~ 242 (243)
T 3la7_A 197 QAIAEAIGSTRVTVTRLLGD----LREKKMISIHKKKITVHKPVTLSRQF 242 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHH----HHHTTSEEEETTEEEECC--------
T ss_pred HHHHHHHCCcHHHHHHHHHH----HHHCCCEEEcCCEEEECCHHHHHhhh
Confidence 69999999988777766664 4678888877777777773 455443
No 21
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=23.32 E-value=54 Score=28.66 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=37.3
Q ss_pred HHHHHhhCCCc-cCHHHHHHHHHHHHHhccCCCcCCCceeecch-hHHhhcCC
Q psy18120 308 PRLARLLGVHT-QTRPVIISALWQYIKTHKLQDAHEREFINCDK-FFEQIFSC 358 (392)
Q Consensus 308 peLa~~LG~~e-~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe-~Lr~LFg~ 358 (392)
.+||++||++. .|-..+++.| +..||.+-..+++++.|. .|+++.++
T Consensus 173 ~~lA~~lG~sr~etvsR~l~~l----~~~glI~~~~~~i~I~d~~~L~~~~~~ 221 (238)
T 2bgc_A 173 QELGYSSGIAHSSAVSRIISKL----KQEKVIVYKNSCFYVQNLDYLKRYAPK 221 (238)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHH----HHTTSEEEETTEEEESCHHHHHHHCHH
T ss_pred HHHHHHhCCChHHHHHHHHHHH----HHCCCEEecCCEEEEeCHHHHHHHhcC
Confidence 58999999998 7888888776 788998877777777784 77776643
No 22
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=23.27 E-value=50 Score=28.48 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=36.1
Q ss_pred HHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhc
Q psy18120 308 PRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIF 356 (392)
Q Consensus 308 peLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LF 356 (392)
.+||++||++..|-..+++.| +..|+..-+.++++.+| +.|+++.
T Consensus 184 ~~lA~~lg~sr~tvsR~l~~l----~~~g~I~~~~~~i~i~d~~~L~~~~ 229 (232)
T 2gau_A 184 EELATLSNMTVSNAIRTLSTF----VSERMLALDGKRIKIIDCDRLQKTA 229 (232)
T ss_dssp HHHHHHTTSCHHHHHHHHHHH----HHTTSEEEETTEEEESCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHH----HHCCCEeeCCCEEEEeCHHHHHHHh
Confidence 689999999998888888775 78899887778888888 4666553
Done!