Your job contains 1 sequence.
>psy18120
MSQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQ
PPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKKLADKILPQKVR
DLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKESGE
GEEGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVKR
KFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQ
PLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPR
MKFAEIPQRLNPLLHPPDPIVINHIIRYLIIV
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy18120
(392 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:1933621 - symbol:Smarcd2 "SWI/SNF related, matrix... 640 1.6e-99 4
FB|FBgn0025463 - symbol:Bap60 "Brahma associated protein ... 828 2.7e-86 2
UNIPROTKB|F1MTG9 - symbol:SMARCD1 "SWI/SNF-related matrix... 729 3.7e-74 2
UNIPROTKB|Q96GM5 - symbol:SMARCD1 "SWI/SNF-related matrix... 729 3.7e-74 2
MGI|MGI:1933623 - symbol:Smarcd1 "SWI/SNF related, matrix... 729 3.7e-74 2
RGD|1305406 - symbol:Smarcd1 "SWI/SNF related, matrix ass... 729 3.7e-74 2
UNIPROTKB|Q2TBN1 - symbol:SMARCD1 "SWI/SNF-related matrix... 729 3.7e-74 2
UNIPROTKB|H9KZE0 - symbol:SMARCD1 "Uncharacterized protei... 726 8.6e-72 1
ZFIN|ZDB-GENE-080509-2 - symbol:smarcd3b "SWI/SNF related... 722 2.3e-71 1
UNIPROTKB|F1NJN5 - symbol:SMARCD3 "Uncharacterized protei... 720 3.7e-71 1
UNIPROTKB|Q17QK5 - symbol:SMARCD3 "SWI/SNF related, matri... 702 3.0e-69 1
UNIPROTKB|Q6STE5 - symbol:SMARCD3 "SWI/SNF-related matrix... 702 3.0e-69 1
MGI|MGI:1914243 - symbol:Smarcd3 "SWI/SNF related, matrix... 702 3.0e-69 1
UNIPROTKB|F1SSN0 - symbol:SMARCD3 "Uncharacterized protei... 702 3.0e-69 1
RGD|1311869 - symbol:Smarcd3 "SWI/SNF related, matrix ass... 701 3.8e-69 1
UNIPROTKB|Q92925 - symbol:SMARCD2 "SWI/SNF-related matrix... 642 5.1e-68 3
RGD|69289 - symbol:Smarcd2 "SWI/SNF related, matrix assoc... 643 8.3e-68 3
UNIPROTKB|E1BJD1 - symbol:SMARCD2 "SWI/SNF-related matrix... 641 1.1e-67 3
UNIPROTKB|F1RSJ9 - symbol:SMARCD2 "Uncharacterized protei... 634 5.7e-67 3
UNIPROTKB|E1C555 - symbol:SMARCD2 "Uncharacterized protei... 650 9.7e-64 1
WB|WBGene00044072 - symbol:ham-3 species:6239 "Caenorhabd... 610 1.7e-59 1
WB|WBGene00015971 - symbol:swsn-2.2 species:6239 "Caenorh... 539 5.6e-52 1
TAIR|locus:2078713 - symbol:AT3G01890 "AT3G01890" species... 320 6.7e-43 2
TAIR|locus:2174638 - symbol:CHC1 "AT5G14170" species:3702... 299 1.8e-42 2
UNIPROTKB|F1SHA1 - symbol:SMARCD1 "Uncharacterized protei... 407 2.8e-40 2
POMBASE|SPAC23G3.10c - symbol:ssr3 "SWI/SNF and RSC compl... 415 7.8e-39 1
DICTYBASE|DDB_G0273725 - symbol:snf12-2 "SWI/SNF protein ... 330 7.9e-30 1
DICTYBASE|DDB_G0273203 - symbol:snf12-1 "SWI/SNF protein ... 330 7.9e-30 1
ASPGD|ASPL0000017588 - symbol:AN10524 species:162425 "Eme... 216 4.3e-28 2
UNIPROTKB|F8VW95 - symbol:SMARCD1 "SWI/SNF-related matrix... 231 7.6e-22 2
CGD|CAL0006320 - symbol:orf19.2265 species:5476 "Candida ... 149 2.6e-07 2
UNIPROTKB|Q59Z35 - symbol:SNF12 "Putative uncharacterized... 149 2.6e-07 2
SGD|S000000648 - symbol:RSC6 "Component of the RSC chroma... 133 2.9e-06 2
POMBASE|SPCC285.17 - symbol:spp27 "RNA polymerase I upstr... 127 7.4e-06 1
ASPGD|ASPL0000053508 - symbol:AN0360 species:162425 "Emer... 122 2.2e-05 2
TAIR|locus:2096404 - symbol:AT3G03590 "AT3G03590" species... 105 3.2e-05 1
SGD|S000004846 - symbol:TRI1 "Non-essential sumoylated pr... 110 0.00068 1
TAIR|locus:2028671 - symbol:AT1G31760 "AT1G31760" species... 92 0.00082 1
>MGI|MGI:1933621 [details] [associations]
symbol:Smarcd2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 2"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016568 "chromatin modification"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 MGI:MGI:1933621
GO:GO:0006355 GO:GO:0006351 GO:GO:0006338 GO:GO:0016514
GO:GO:0006337 SUPFAM:SSF47592 EMBL:AL604045
GermOnline:ENSMUSG00000040699 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI OrthoDB:EOG4WQ12P
EMBL:BC005732 IPI:IPI00115461 IPI:IPI00649685 RefSeq:NP_001123659.1
RefSeq:NP_114084.2 UniGene:Mm.21772 ProteinModelPortal:Q99JR8
SMR:Q99JR8 DIP:DIP-58950N IntAct:Q99JR8 STRING:Q99JR8
PhosphoSite:Q99JR8 PaxDb:Q99JR8 PRIDE:Q99JR8 DNASU:83796
Ensembl:ENSMUST00000021052 Ensembl:ENSMUST00000106843 GeneID:83796
KEGG:mmu:83796 InParanoid:B1ARJ6 NextBio:350778 Bgee:Q99JR8
Genevestigator:Q99JR8 Uniprot:Q99JR8
Length = 531
Score = 640 (230.4 bits), Expect = 1.6e-99, Sum P(4) = 1.6e-99
Identities = 119/171 (69%), Positives = 140/171 (81%)
Query: 216 VASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELDKDLYGPDNHLVEWHRTPTTQE 275
VASWELRVEG+LL+D P+K LVIELDK+LYGPDNHLVEWHR PTTQE
Sbjct: 227 VASWELRVEGKLLDD----PSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQE 282
Query: 276 TDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTH 335
TDGFQVKRPGD NV+CT+LL+LD+QP Q+KLDPRLARLLGVHTQTR I+ ALW YIK +
Sbjct: 283 TDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHN 342
Query: 336 KLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
+LQD HERE+INC+++F QIFSC R++F+EIP +L LL PDPIVINH+I
Sbjct: 343 QLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVI 393
Score = 315 (115.9 bits), Expect = 1.6e-99, Sum P(4) = 1.6e-99
Identities = 65/109 (59%), Positives = 79/109 (72%)
Query: 110 LADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFIS 169
+ADK+LPQ++R+LVPESQAYMDLLAFERKLD TI RKR++IQEA+K+P+ QKRKLRI+IS
Sbjct: 140 MADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYIS 199
Query: 170 NTFYPAKXXXXXXXXX-----------VASWELRVEGRLLEDSKNDPNK 207
NTF P+K VASWELRVEG+LL+D K
Sbjct: 200 NTFSPSKADGDNAGTAGTPGGTPAADKVASWELRVEGKLLDDPSKQKRK 248
Score = 38 (18.4 bits), Expect = 1.6e-99, Sum P(4) = 1.6e-99
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 19 PPPSGPPM 26
PPP+GP M
Sbjct: 29 PPPAGPGM 36
Score = 38 (18.4 bits), Expect = 1.6e-99, Sum P(4) = 1.6e-99
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 67 RPSGPVNPNIANKRP 81
RP GP P +RP
Sbjct: 60 RPMGPAGPAAQYQRP 74
>FB|FBgn0025463 [details] [associations]
symbol:Bap60 "Brahma associated protein 60kD" species:7227
"Drosophila melanogaster" [GO:0003713 "transcription coactivator
activity" evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0035060 "brahma complex" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IGI] [GO:0001085 "RNA
polymerase II transcription factor binding" evidence=IPI]
[GO:0031453 "positive regulation of heterochromatin assembly"
evidence=IMP] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0048666 "neuron
development" evidence=IMP] [GO:0007517 "muscle organ development"
evidence=IMP] InterPro:IPR003121 Pfam:PF02201 GO:GO:0045893
GO:GO:0003677 GO:GO:0048813 GO:GO:0007517 GO:GO:0035060
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
EMBL:AF071503 ProteinModelPortal:O76490 SMR:O76490 IntAct:O76490
STRING:O76490 PaxDb:O76490 PRIDE:O76490 FlyBase:FBgn0025463
InParanoid:O76490 OrthoDB:EOG4HDR8S ArrayExpress:O76490 Bgee:O76490
GO:GO:0031453 Uniprot:O76490
Length = 515
Score = 828 (296.5 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
Identities = 156/185 (84%), Positives = 165/185 (89%)
Query: 205 PNK--SGEGEEGSVASWELRVEGRLLEDSKNDPN-KVXXXXXXXXXXLVIELDKDLYGPD 261
P+K + +GEEG+VASWELRVEGRLLED K DPN K+ LVIELDK+LYGPD
Sbjct: 194 PSKEPTNDGEEGAVASWELRVEGRLLEDGKGDPNTKIKRKFSSFFKSLVIELDKELYGPD 253
Query: 262 NHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTR 321
NHLVEWHRT TTQETDGFQVKRPGD+NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTR
Sbjct: 254 NHLVEWHRTHTTQETDGFQVKRPGDRNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTR 313
Query: 322 PVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIV 381
PVIISALWQYIKTHKLQDAHERE+INCDK+ EQIFSC RMKFAEIPQRLNPLLHPPDPIV
Sbjct: 314 PVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSCQRMKFAEIPQRLNPLLHPPDPIV 373
Query: 382 INHII 386
INH I
Sbjct: 374 INHFI 378
Score = 402 (146.6 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 82/98 (83%), Positives = 85/98 (86%)
Query: 110 LADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFIS 169
LA+KILPQKVRDLVPESQAYMDLL FERKLD+TIMRKRLDIQEALKRPMKQKRKLRIFIS
Sbjct: 130 LAEKILPQKVRDLVPESQAYMDLLTFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFIS 189
Query: 170 NTFYPAKX-XXXXXXXXVASWELRVEGRLLEDSKNDPN 206
NTFYP+K VASWELRVEGRLLED K DPN
Sbjct: 190 NTFYPSKEPTNDGEEGAVASWELRVEGRLLEDGKGDPN 227
Score = 54 (24.1 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 1 MSQRFQGSQNTNQAPLRY-PPPSGPPMR 27
MSQRF Q Q+ RY PPP P MR
Sbjct: 1 MSQRFAPGQAPVQS--RYQPPPPAPGMR 26
>UNIPROTKB|F1MTG9 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=IEA]
[GO:0032947 "protein complex scaffold" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
IPI:IPI00723099 UniGene:Bt.87407 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:DAAA02012932 Ensembl:ENSBTAT00000001284
Uniprot:F1MTG9
Length = 515
Score = 729 (261.7 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 141/195 (72%), Positives = 156/195 (80%)
Query: 196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLEDS---KNDPNKVXXXXXXXXXXLVI 251
R+ + +P KS E EG+VASWELRVEGRLLEDS K D K LVI
Sbjct: 183 RIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVI 242
Query: 252 ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLA 311
ELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLA
Sbjct: 243 ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA 302
Query: 312 RLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLN 371
RLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF RMKF+EIPQRL+
Sbjct: 303 RLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLH 362
Query: 372 PLLHPPDPIVINHII 386
LL PP+PI+INH+I
Sbjct: 363 ALLMPPEPIIINHVI 377
Score = 389 (142.0 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 87/140 (62%), Positives = 95/140 (67%)
Query: 65 GMRPSGPVNPNIANKR--PSDARP-PNNLKNDYQHXXXXXXXXXXXXXLADKILPQKVRD 121
G PS V P +A S RP P ++ Q +ADKILPQ++R+
Sbjct: 82 GGNPS--VRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRE 139
Query: 122 LVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXXX 181
LVPESQAYMDLLAFERKLD TIMRKRLDIQEALKRP+KQKRKLRIFISNTF PAK
Sbjct: 140 LVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAED 199
Query: 182 XXXXVASWELRVEGRLLEDS 201
VASWELRVEGRLLEDS
Sbjct: 200 GEGTVASWELRVEGRLLEDS 219
Score = 38 (18.4 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 7 GSQNTNQAPLRYPPPSG--PPMRYG 29
GS+ T Q P PP G P +R G
Sbjct: 66 GSRMTPQGPSMGPPGYGGNPSVRPG 90
>UNIPROTKB|Q96GM5 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9606 "Homo sapiens" [GO:0007399 "nervous system
development" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032947 "protein complex scaffold" evidence=IDA]
[GO:0048096 "chromatin-mediated maintenance of transcription"
evidence=IMP] [GO:0006338 "chromatin remodeling" evidence=IDA;IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF
complex" evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0003713 "transcription coactivator activity" evidence=NAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=NAS] [GO:0006337 "nucleosome disassembly"
evidence=IDA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0007399
GO:GO:0006357 GO:GO:0003713 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0032947 EMBL:AC025154 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 eggNOG:COG5531 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 EMBL:AF109733 EMBL:U66617 EMBL:BC009368
IPI:IPI00852816 IPI:IPI00853408 RefSeq:NP_003067.3
RefSeq:NP_620710.2 UniGene:Hs.79335 ProteinModelPortal:Q96GM5
SMR:Q96GM5 DIP:DIP-33390N IntAct:Q96GM5 MINT:MINT-1144212
STRING:Q96GM5 PhosphoSite:Q96GM5 DMDM:238054318 PaxDb:Q96GM5
PRIDE:Q96GM5 DNASU:6602 Ensembl:ENST00000381513
Ensembl:ENST00000394963 GeneID:6602 KEGG:hsa:6602 UCSC:uc001rvx.4
UCSC:uc001rvy.4 GeneCards:GC12P050478 HGNC:HGNC:11106 HPA:HPA004101
MIM:601735 neXtProt:NX_Q96GM5 PharmGKB:PA35956 HOVERGEN:HBG054046
InParanoid:Q96GM5 OMA:NTFYPSK ChiTaRS:SMARCD1 GenomeRNAi:6602
NextBio:25683 ArrayExpress:Q96GM5 Bgee:Q96GM5 CleanEx:HS_SMARCD1
Genevestigator:Q96GM5 Uniprot:Q96GM5
Length = 515
Score = 729 (261.7 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 141/195 (72%), Positives = 156/195 (80%)
Query: 196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLEDS---KNDPNKVXXXXXXXXXXLVI 251
R+ + +P KS E EG+VASWELRVEGRLLEDS K D K LVI
Sbjct: 183 RIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVI 242
Query: 252 ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLA 311
ELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLA
Sbjct: 243 ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA 302
Query: 312 RLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLN 371
RLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF RMKF+EIPQRL+
Sbjct: 303 RLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLH 362
Query: 372 PLLHPPDPIVINHII 386
LL PP+PI+INH+I
Sbjct: 363 ALLMPPEPIIINHVI 377
Score = 389 (142.0 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 87/140 (62%), Positives = 95/140 (67%)
Query: 65 GMRPSGPVNPNIANKR--PSDARP-PNNLKNDYQHXXXXXXXXXXXXXLADKILPQKVRD 121
G PS V P +A S RP P ++ Q +ADKILPQ++R+
Sbjct: 82 GGNPS--VRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRE 139
Query: 122 LVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXXX 181
LVPESQAYMDLLAFERKLD TIMRKRLDIQEALKRP+KQKRKLRIFISNTF PAK
Sbjct: 140 LVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAED 199
Query: 182 XXXXVASWELRVEGRLLEDS 201
VASWELRVEGRLLEDS
Sbjct: 200 GEGTVASWELRVEGRLLEDS 219
Score = 38 (18.4 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 7 GSQNTNQAPLRYPPPSG--PPMRYG 29
GS+ T Q P PP G P +R G
Sbjct: 66 GSRMTPQGPSMGPPGYGGNPSVRPG 90
>MGI|MGI:1933623 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10090 "Mus musculus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0032947
"protein complex scaffold" evidence=ISO] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
MGI:MGI:1933623 GO:GO:0007399 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0048096 GO:GO:0006337 SUPFAM:SSF47592
eggNOG:COG5531 GeneTree:ENSGT00390000017809 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 HOVERGEN:HBG054046 OMA:NTFYPSK ChiTaRS:SMARCD1
EMBL:M25773 EMBL:U66620 EMBL:BC026783 EMBL:BC059921 EMBL:AK075611
IPI:IPI00121270 IPI:IPI00223126 PIR:A30222 RefSeq:NP_114030.2
UniGene:Mm.273756 PDB:1UHR PDBsum:1UHR ProteinModelPortal:Q61466
SMR:Q61466 IntAct:Q61466 STRING:Q61466 PhosphoSite:Q61466
PaxDb:Q61466 PRIDE:Q61466 Ensembl:ENSMUST00000023759 GeneID:83797
KEGG:mmu:83797 UCSC:uc007xqb.1 InParanoid:Q61466
EvolutionaryTrace:Q61466 NextBio:350782 Bgee:Q61466
Genevestigator:Q61466 GermOnline:ENSMUSG00000023018 Uniprot:Q61466
Length = 515
Score = 729 (261.7 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 141/195 (72%), Positives = 156/195 (80%)
Query: 196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLED---SKNDPNKVXXXXXXXXXXLVI 251
R+ + +P KS E EG+VASWELRVEGRLLED SK D K LVI
Sbjct: 183 RIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDAALSKYDATKQKRKFSSFFKSLVI 242
Query: 252 ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLA 311
ELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLA
Sbjct: 243 ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA 302
Query: 312 RLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLN 371
RLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF RMKF+EIPQRL+
Sbjct: 303 RLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLH 362
Query: 372 PLLHPPDPIVINHII 386
LL PP+PI+INH+I
Sbjct: 363 ALLMPPEPIIINHVI 377
Score = 389 (142.0 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 90/149 (60%), Positives = 98/149 (65%)
Query: 65 GMRPSGPVNPNIANKR--PSDARP-PNNLKNDYQHXXXXXXXXXXXXXLADKILPQKVRD 121
G PS V P +A S RP P ++ Q +ADKILPQ++R+
Sbjct: 82 GGNPS--VRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRE 139
Query: 122 LVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXXX 181
LVPESQAYMDLLAFERKLD TIMRKRLDIQEALKRP+KQKRKLRIFISNTF PAK
Sbjct: 140 LVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAED 199
Query: 182 XXXXVASWELRVEGRLLED---SKNDPNK 207
VASWELRVEGRLLED SK D K
Sbjct: 200 GEGTVASWELRVEGRLLEDAALSKYDATK 228
Score = 38 (18.4 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 7 GSQNTNQAPLRYPPPSG--PPMRYG 29
GS+ T Q P PP G P +R G
Sbjct: 66 GSRMTPQGPSMGPPGYGGNPSVRPG 90
>RGD|1305406 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006337 "nucleosome disassembly" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA;ISO] [GO:0032947 "protein complex scaffold"
evidence=IEA;ISO] [GO:0048096 "chromatin-mediated maintenance of
transcription" evidence=IEA;ISO] [GO:0071564 "npBAF complex"
evidence=IEA;ISO] [GO:0071565 "nBAF complex" evidence=IEA;ISO]
InterPro:IPR003121 Pfam:PF02201 RGD:1305406 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0048096 GO:GO:0006337
EMBL:CH474035 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809 CTD:6602
KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835 SMART:SM00151
IPI:IPI00366479 RefSeq:NP_001102222.1 UniGene:Rn.21196
Ensembl:ENSRNOT00000043163 GeneID:363002 KEGG:rno:363002
UCSC:RGD:1305406 NextBio:682087 Uniprot:D3ZBS9
Length = 515
Score = 729 (261.7 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 141/195 (72%), Positives = 156/195 (80%)
Query: 196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLEDS---KNDPNKVXXXXXXXXXXLVI 251
R+ + +P KS E EG+VASWELRVEGRLLEDS K D K LVI
Sbjct: 183 RIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVI 242
Query: 252 ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLA 311
ELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLA
Sbjct: 243 ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA 302
Query: 312 RLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLN 371
RLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF RMKF+EIPQRL+
Sbjct: 303 RLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLH 362
Query: 372 PLLHPPDPIVINHII 386
LL PP+PI+INH+I
Sbjct: 363 ALLMPPEPIIINHVI 377
Score = 389 (142.0 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 87/140 (62%), Positives = 95/140 (67%)
Query: 65 GMRPSGPVNPNIANKR--PSDARP-PNNLKNDYQHXXXXXXXXXXXXXLADKILPQKVRD 121
G PS V P +A S RP P ++ Q +ADKILPQ++R+
Sbjct: 82 GGNPS--VRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRE 139
Query: 122 LVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXXX 181
LVPESQAYMDLLAFERKLD TIMRKRLDIQEALKRP+KQKRKLRIFISNTF PAK
Sbjct: 140 LVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAED 199
Query: 182 XXXXVASWELRVEGRLLEDS 201
VASWELRVEGRLLEDS
Sbjct: 200 GEGTVASWELRVEGRLLEDS 219
Score = 38 (18.4 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 7 GSQNTNQAPLRYPPPSG--PPMRYG 29
GS+ T Q P PP G P +R G
Sbjct: 66 GSRMTPQGPSMGPPGYGGNPSVRPG 90
>UNIPROTKB|Q2TBN1 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0071564 "npBAF complex" evidence=ISS] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0007399 GO:GO:0016568 GO:GO:0071564 GO:GO:0071565
SUPFAM:SSF47592 eggNOG:COG5531 EMBL:BC109890 IPI:IPI00723099
RefSeq:NP_001033648.1 UniGene:Bt.87407 ProteinModelPortal:Q2TBN1
SMR:Q2TBN1 STRING:Q2TBN1 PRIDE:Q2TBN1 GeneID:533232 KEGG:bta:533232
CTD:6602 HOGENOM:HOG000240746 InParanoid:Q2TBN1 KO:K11650
OrthoDB:EOG4DNF48 NextBio:20875968 InterPro:IPR019835 SMART:SM00151
Uniprot:Q2TBN1
Length = 515
Score = 729 (261.7 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 141/195 (72%), Positives = 156/195 (80%)
Query: 196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLEDS---KNDPNKVXXXXXXXXXXLVI 251
R+ + +P KS E EG+VASWELRVEGRLLEDS K D K LVI
Sbjct: 183 RIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVI 242
Query: 252 ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLA 311
ELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLA
Sbjct: 243 ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA 302
Query: 312 RLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLN 371
RLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF RMKF+EIPQRL+
Sbjct: 303 RLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLH 362
Query: 372 PLLHPPDPIVINHII 386
LL PP+PI+INH+I
Sbjct: 363 ALLMPPEPIIINHVI 377
Score = 386 (140.9 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 86/140 (61%), Positives = 94/140 (67%)
Query: 65 GMRPSGPVNPNIANKRPSDA--RP-PNNLKNDYQHXXXXXXXXXXXXXLADKILPQKVRD 121
G PS V P +A + RP P +K Q +ADKILPQ++R+
Sbjct: 82 GGNPS--VRPGLAQSGMDQSLKRPAPQQIKQVQQQAVQNRNHNAKKKKMADKILPQRIRE 139
Query: 122 LVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXXX 181
LVPESQ YMDLLAFERKLD TIMRKRLDIQEALKRP+KQKRKLRIFISNTF PAK
Sbjct: 140 LVPESQDYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAED 199
Query: 182 XXXXVASWELRVEGRLLEDS 201
VASWELRVEGRLLEDS
Sbjct: 200 GEGTVASWELRVEGRLLEDS 219
Score = 38 (18.4 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 7 GSQNTNQAPLRYPPPSG--PPMRYG 29
GS+ T Q P PP G P +R G
Sbjct: 66 GSRMTPQGPSMGPPGYGGNPSVRPG 90
>UNIPROTKB|H9KZE0 [details] [associations]
symbol:SMARCD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0032947 "protein
complex scaffold" evidence=IEA] [GO:0048096 "chromatin-mediated
maintenance of transcription" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR003121 Pfam:PF02201 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:AADN02072424 Ensembl:ENSGALT00000010024
Uniprot:H9KZE0
Length = 516
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 140/195 (71%), Positives = 156/195 (80%)
Query: 196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLEDS---KNDPNKVXXXXXXXXXXLVI 251
R+ + +P KS E EG+VASWELRVEGRLLEDS K D K LVI
Sbjct: 184 RIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVI 243
Query: 252 ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLA 311
ELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLA
Sbjct: 244 ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA 303
Query: 312 RLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLN 371
RLLG+HTQTRPVII ALWQYIKTHKLQD HERE++ CDK+ +QIF RMKF+EIPQRL+
Sbjct: 304 RLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREYVICDKYLQQIFESQRMKFSEIPQRLH 363
Query: 372 PLLHPPDPIVINHII 386
LL PP+PI+INH+I
Sbjct: 364 ALLMPPEPIIINHVI 378
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 86/140 (61%), Positives = 93/140 (66%)
Query: 65 GMRPSGPVNPNIANKRPSDAR--P-PNNLKNDYQHXXXXXXXXXXXXXLADKILPQKVRD 121
G S V P +A AR P P L+ +ADKILPQ++R+
Sbjct: 81 GYGGSPAVRPGMAQAGLDQARKRPAPQQLQQVQPQAVPNRNHNAKKKKMADKILPQRIRE 140
Query: 122 LVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXXX 181
LVPESQAYMDLLAFERKLD TIMRKRLDIQEALKRP+KQKRKLRIFISNTF PAK
Sbjct: 141 LVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAED 200
Query: 182 XXXXVASWELRVEGRLLEDS 201
VASWELRVEGRLLEDS
Sbjct: 201 GEGTVASWELRVEGRLLEDS 220
>ZFIN|ZDB-GENE-080509-2 [details] [associations]
symbol:smarcd3b "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily d, member 3b"
species:7955 "Danio rerio" [GO:0007368 "determination of left/right
symmetry" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IGI] [GO:0055007 "cardiac muscle cell differentiation"
evidence=IGI] InterPro:IPR003121 Pfam:PF02201
ZFIN:ZDB-GENE-080509-2 GO:GO:0003007 GO:GO:0055007 GO:GO:0007368
SUPFAM:SSF47592 eggNOG:COG5531 GeneTree:ENSGT00390000017809
HOGENOM:HOG000240746 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 OrthoDB:EOG4QFWD6 OMA:PAISACY EMBL:BX005319
EMBL:BX322787 EMBL:EF552706 IPI:IPI00501254 RefSeq:NP_001120778.1
UniGene:Dr.28422 STRING:B2KL77 Ensembl:ENSDART00000006724
GeneID:562140 KEGG:dre:562140 CTD:562140 NextBio:20884266
Uniprot:B2KL77
Length = 476
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 134/189 (70%), Positives = 154/189 (81%)
Query: 198 LEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELDKDL 257
+ ++ N E EGS+ASWELRVEG+LL+D P K+ LVIELDKDL
Sbjct: 154 ISNTFNAAKPDAEDSEGSIASWELRVEGKLLDD----PGKMKRKFSSFFKSLVIELDKDL 209
Query: 258 YGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVH 317
YGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLARLLG+H
Sbjct: 210 YGPDNHLVEWHRTGTTQETDGFQVKRPGDVNVRCTLLLMLDYQPPQFKLDPRLARLLGIH 269
Query: 318 TQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPP 377
TQTR II ALWQY+KT+KLQD+H++E+INCDK+F+QIF CPR+KF+EIPQRL LL PP
Sbjct: 270 TQTRSSIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIPQRLTNLLLPP 329
Query: 378 DPIVINHII 386
DPIVINHII
Sbjct: 330 DPIVINHII 338
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 77/134 (57%), Positives = 91/134 (67%)
Query: 69 SGPVNPNIANK--RPSDARPPNNLKNDYQHXXXXXXXXXXXXXLADKILPQKVRDLVPES 126
S V P + N+ S RP + + Q +ADKILPQ++R+LVPES
Sbjct: 53 SPAVRPGLTNQSMEASRKRPNPSQQQIQQQAVQNRNRNAKRRKMADKILPQRIRELVPES 112
Query: 127 QAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXXXXXXXV 186
QAYMDLLAFERKLD TIMRKR+DIQEALKRPMKQKRKLR++ISNTF AK +
Sbjct: 113 QAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNAAKPDAEDSEGSI 172
Query: 187 ASWELRVEGRLLED 200
ASWELRVEG+LL+D
Sbjct: 173 ASWELRVEGKLLDD 186
>UNIPROTKB|F1NJN5 [details] [associations]
symbol:SMARCD3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0035257 "nuclear hormone
receptor binding" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0043393 "regulation of protein
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0002052 "positive
regulation of neuroblast proliferation" evidence=IEA] [GO:0003139
"secondary heart field specification" evidence=IEA] [GO:0003219
"cardiac right ventricle formation" evidence=IEA] [GO:0003407
"neural retina development" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0000790 GO:GO:0071564 GO:GO:0071565 GO:GO:0006337
GO:GO:0030374 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
InterPro:IPR019835 SMART:SM00151 OMA:PLKSQMS EMBL:AADN02078761
EMBL:AADN02078762 EMBL:AADN02078763 EMBL:AADN02078764
EMBL:AADN02078765 EMBL:AADN02078766 IPI:IPI00583326
Ensembl:ENSGALT00000021298 Uniprot:F1NJN5
Length = 462
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 136/192 (70%), Positives = 156/192 (81%)
Query: 196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELD 254
RL + +P KS + +GS+ASWELRVEG+LL+D K LVIELD
Sbjct: 137 RLYISNTFNPAKSDADDSDGSIASWELRVEGKLLDDLSKQKRKFSSFFKS----LVIELD 192
Query: 255 KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLL 314
KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGD +VRCT+LL+LDYQP QFKLDPRLARLL
Sbjct: 193 KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQFKLDPRLARLL 252
Query: 315 GVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLL 374
G+HTQTR II ALWQYIKT+KLQD+H++E+INCDK+F+QIF CPR+KF+EIPQRL LL
Sbjct: 253 GIHTQTRSAIIQALWQYIKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIPQRLTNLL 312
Query: 375 HPPDPIVINHII 386
PPDPIVINHII
Sbjct: 313 LPPDPIVINHII 324
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 71/98 (72%), Positives = 81/98 (82%)
Query: 110 LADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFIS 169
+ADKILPQ++R+LVPESQAYMDLLAFERKLD TIMRKR+DIQEALKRPMKQKRKLR++IS
Sbjct: 82 MADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYIS 141
Query: 170 NTFYPAKXXXXXXXXXVASWELRVEGRLLEDSKNDPNK 207
NTF PAK +ASWELRVEG+LL+D K
Sbjct: 142 NTFNPAKSDADDSDGSIASWELRVEGKLLDDLSKQKRK 179
>UNIPROTKB|Q17QK5 [details] [associations]
symbol:SMARCD3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043393 "regulation of protein binding" evidence=IEA]
[GO:0042692 "muscle cell differentiation" evidence=IEA] [GO:0035257
"nuclear hormone receptor binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003407 "neural retina development"
evidence=IEA] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA] [GO:0003139 "secondary heart field specification"
evidence=IEA] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0042692 GO:GO:0000790 GO:GO:0071564 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746
InterPro:IPR019835 SMART:SM00151 HOVERGEN:HBG054046 OMA:PLKSQMS
EMBL:DAAA02012020 EMBL:DAAA02012021 EMBL:DAAA02012022
EMBL:DAAA02012023 EMBL:DAAA02012024 EMBL:BC118305 IPI:IPI00788564
UniGene:Bt.53201 SMR:Q17QK5 STRING:Q17QK5
Ensembl:ENSBTAT00000028051 Uniprot:Q17QK5
Length = 470
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 128/189 (67%), Positives = 154/189 (81%)
Query: 198 LEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELDKDL 257
+ ++ N E +GS+ASWELRVEG+LL+D P+K LVIELDKDL
Sbjct: 148 ISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD----PSKQKRKFSSFFKSLVIELDKDL 203
Query: 258 YGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVH 317
YGPDNHLVEWHRTPTTQETDGFQVKRPGD +VRCT+LL+LDYQP QFKLDPRLARLLG+H
Sbjct: 204 YGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLH 263
Query: 318 TQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPP 377
TQ+R I+ ALWQY+KT++LQD+H++E+IN DK+F+QIF CPR+KF+EIPQRL LL PP
Sbjct: 264 TQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPP 323
Query: 378 DPIVINHII 386
DPIVINH+I
Sbjct: 324 DPIVINHVI 332
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 82/147 (55%), Positives = 96/147 (65%)
Query: 65 GMRPSGPVNPNIANKRPSDARPPNNLKNDYQH----XXXXXXXXXXXXXLADKILPQKVR 120
G+ P+G + P A KR A PP + Q +ADKILPQ++R
Sbjct: 46 GLAPAG-MEP--ARKRA--APPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIR 100
Query: 121 DLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXX 180
+LVPESQAYMDLLAFERKLD TIMRKR+DIQEALKRPMKQKRKLR++ISNTF PAK
Sbjct: 101 ELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAE 160
Query: 181 XXXXXVASWELRVEGRLLEDSKNDPNK 207
+ASWELRVEG+LL+D K
Sbjct: 161 DSDGSIASWELRVEGKLLDDPSKQKRK 187
>UNIPROTKB|Q6STE5 [details] [associations]
symbol:SMARCD3 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 3"
species:9606 "Homo sapiens" [GO:0003139 "secondary heart field
specification" evidence=IEA] [GO:0003219 "cardiac right ventricle
formation" evidence=IEA] [GO:0042692 "muscle cell differentiation"
evidence=IEA] [GO:0043393 "regulation of protein binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0016514
"SWI/SNF complex" evidence=IDA;NAS] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0005102 "receptor binding"
evidence=IPI] [GO:0035257 "nuclear hormone receptor binding"
evidence=IPI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0071565 "nBAF complex"
evidence=ISS] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP;NAS] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IC;IDA] [GO:0030374 "ligand-dependent nuclear receptor
transcription coactivator activity" evidence=IMP] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003407 "neural retina development"
evidence=IEP] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IDA] Reactome:REACT_111217
InterPro:IPR003121 Pfam:PF02201 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0005654 GO:GO:0044281 GO:GO:0043393
GO:GO:0044255 GO:GO:0006357 GO:GO:0006351 EMBL:CH471173
EMBL:AC021097 GO:GO:0006338 GO:GO:0042692 GO:GO:0000790
GO:GO:0003713 GO:GO:0071564 GO:GO:0016514 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219 EMBL:AC005486
eggNOG:COG5531 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 EMBL:U66619 EMBL:AY450430 EMBL:AY450431
EMBL:BC002628 EMBL:BC110350 IPI:IPI00106988 IPI:IPI00456146
RefSeq:NP_001003801.1 RefSeq:NP_001003802.1 RefSeq:NP_003069.2
UniGene:Hs.647067 ProteinModelPortal:Q6STE5 SMR:Q6STE5
DIP:DIP-33012N IntAct:Q6STE5 STRING:Q6STE5 PhosphoSite:Q6STE5
DMDM:57013057 PaxDb:Q6STE5 PRIDE:Q6STE5 DNASU:6604
Ensembl:ENST00000262188 Ensembl:ENST00000356800
Ensembl:ENST00000392811 GeneID:6604 KEGG:hsa:6604 UCSC:uc003wjs.3
UCSC:uc003wjt.3 CTD:6604 GeneCards:GC07M150935 HGNC:HGNC:11108
MIM:601737 neXtProt:NX_Q6STE5 PharmGKB:PA35958 InParanoid:Q6STE5
OMA:PLKSQMS OrthoDB:EOG4QFWD6 ChiTaRS:SMARCD3 GenomeRNAi:6604
NextBio:25695 ArrayExpress:Q6STE5 Bgee:Q6STE5 CleanEx:HS_SMARCD3
Genevestigator:Q6STE5 GermOnline:ENSG00000082014 Uniprot:Q6STE5
Length = 483
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 128/189 (67%), Positives = 154/189 (81%)
Query: 198 LEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELDKDL 257
+ ++ N E +GS+ASWELRVEG+LL+D P+K LVIELDKDL
Sbjct: 161 ISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD----PSKQKRKFSSFFKSLVIELDKDL 216
Query: 258 YGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVH 317
YGPDNHLVEWHRTPTTQETDGFQVKRPGD +VRCT+LL+LDYQP QFKLDPRLARLLG+H
Sbjct: 217 YGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLH 276
Query: 318 TQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPP 377
TQ+R I+ ALWQY+KT++LQD+H++E+IN DK+F+QIF CPR+KF+EIPQRL LL PP
Sbjct: 277 TQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPP 336
Query: 378 DPIVINHII 386
DPIVINH+I
Sbjct: 337 DPIVINHVI 345
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 82/147 (55%), Positives = 96/147 (65%)
Query: 65 GMRPSGPVNPNIANKRPSDARPPNNLKNDYQH----XXXXXXXXXXXXXLADKILPQKVR 120
G+ P+G + P A KR A PP + Q +ADKILPQ++R
Sbjct: 59 GLAPAG-MEP--ARKRA--APPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIR 113
Query: 121 DLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXX 180
+LVPESQAYMDLLAFERKLD TIMRKR+DIQEALKRPMKQKRKLR++ISNTF PAK
Sbjct: 114 ELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAE 173
Query: 181 XXXXXVASWELRVEGRLLEDSKNDPNK 207
+ASWELRVEG+LL+D K
Sbjct: 174 DSDGSIASWELRVEGKLLDDPSKQKRK 200
>MGI|MGI:1914243 [details] [associations]
symbol:Smarcd3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=ISO] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0003139 "secondary heart field specification"
evidence=IMP] [GO:0003219 "cardiac right ventricle formation"
evidence=IMP] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016922 "ligand-dependent nuclear receptor
binding" evidence=ISO] [GO:0030374 "ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO]
[GO:0035257 "nuclear hormone receptor binding" evidence=ISO]
[GO:0042692 "muscle cell differentiation" evidence=IMP] [GO:0043393
"regulation of protein binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0071564 "npBAF complex" evidence=ISO;IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
MGI:MGI:1914243 GO:GO:0005737 GO:GO:0045893 GO:GO:0043393
GO:GO:0006351 GO:GO:0006338 GO:GO:0042692 GO:GO:0000790
GO:GO:0071564 GO:GO:0003407 GO:GO:0071565 GO:GO:0006337
GO:GO:0002052 GO:GO:0030374 GO:GO:0003139 SUPFAM:SSF47592
GO:GO:0003219 eggNOG:COG5531 GeneTree:ENSGT00390000017809
HOGENOM:HOG000240746 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 CTD:6604 OMA:PLKSQMS OrthoDB:EOG4QFWD6
EMBL:AK005094 EMBL:AK019374 EMBL:BC013122 EMBL:BC060525
IPI:IPI00467181 RefSeq:NP_080167.3 UniGene:Mm.436539
ProteinModelPortal:Q6P9Z1 SMR:Q6P9Z1 DIP:DIP-48886N STRING:Q6P9Z1
PhosphoSite:Q6P9Z1 PaxDb:Q6P9Z1 PRIDE:Q6P9Z1
Ensembl:ENSMUST00000030791 GeneID:66993 KEGG:mmu:66993
UCSC:uc008wsd.1 InParanoid:Q6P9Z1 NextBio:323242 Bgee:Q6P9Z1
Genevestigator:Q6P9Z1 GermOnline:ENSMUSG00000028949 Uniprot:Q6P9Z1
Length = 483
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 128/189 (67%), Positives = 154/189 (81%)
Query: 198 LEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELDKDL 257
+ ++ N E +GS+ASWELRVEG+LL+D P+K LVIELDKDL
Sbjct: 161 ISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD----PSKQKRKFSSFFKSLVIELDKDL 216
Query: 258 YGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVH 317
YGPDNHLVEWHRTPTTQETDGFQVKRPGD +VRCT+LL+LDYQP QFKLDPRLARLLG+H
Sbjct: 217 YGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLH 276
Query: 318 TQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPP 377
TQ+R I+ ALWQY+KT++LQD+H++E+IN DK+F+QIF CPR+KF+EIPQRL LL PP
Sbjct: 277 TQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPP 336
Query: 378 DPIVINHII 386
DPIVINH+I
Sbjct: 337 DPIVINHVI 345
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 82/147 (55%), Positives = 96/147 (65%)
Query: 65 GMRPSGPVNPNIANKRPSDARPPNNLKNDYQH----XXXXXXXXXXXXXLADKILPQKVR 120
G+ P+G + P A KR A PP + Q +ADKILPQ++R
Sbjct: 59 GLAPAG-MEP--ARKRA--APPPGQSQAQGQGQPVPTAPARSRSAKRRKMADKILPQRIR 113
Query: 121 DLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXX 180
+LVPESQAYMDLLAFERKLD TIMRKR+DIQEALKRPMKQKRKLR++ISNTF PAK
Sbjct: 114 ELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAE 173
Query: 181 XXXXXVASWELRVEGRLLEDSKNDPNK 207
+ASWELRVEG+LL+D K
Sbjct: 174 DSDGSIASWELRVEGKLLDDPSKQKRK 200
>UNIPROTKB|F1SSN0 [details] [associations]
symbol:SMARCD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043393 "regulation
of protein binding" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0035257 "nuclear hormone
receptor binding" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016922 "ligand-dependent nuclear receptor binding"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003407 "neural retina development"
evidence=IEA] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA] [GO:0003139 "secondary heart field specification"
evidence=IEA] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0042692 GO:GO:0000790 GO:GO:0071564 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:PLKSQMS EMBL:FP102583 Ensembl:ENSSSCT00000017896 Uniprot:F1SSN0
Length = 486
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 128/189 (67%), Positives = 154/189 (81%)
Query: 198 LEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELDKDL 257
+ ++ N E +GS+ASWELRVEG+LL+D P+K LVIELDKDL
Sbjct: 164 ISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD----PSKQKRKFSSFFKSLVIELDKDL 219
Query: 258 YGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVH 317
YGPDNHLVEWHRTPTTQETDGFQVKRPGD +VRCT+LL+LDYQP QFKLDPRLARLLG+H
Sbjct: 220 YGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLH 279
Query: 318 TQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPP 377
TQ+R I+ ALWQY+KT++LQD+H++E+IN DK+F+QIF CPR+KF+EIPQRL LL PP
Sbjct: 280 TQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPP 339
Query: 378 DPIVINHII 386
DPIVINH+I
Sbjct: 340 DPIVINHVI 348
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 70/97 (72%), Positives = 80/97 (82%)
Query: 111 ADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISN 170
A++ILPQK+R+LVPESQAYMDLLAFERKLD TIMRKR+DIQEALKRPMKQKRKLR++ISN
Sbjct: 107 AEQILPQKIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISN 166
Query: 171 TFYPAKXXXXXXXXXVASWELRVEGRLLEDSKNDPNK 207
TF PAK +ASWELRVEG+LL+D K
Sbjct: 167 TFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRK 203
>RGD|1311869 [details] [associations]
symbol:Smarcd3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=ISO] [GO:0003139 "secondary heart field specification"
evidence=IEA;ISO] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA;ISO] [GO:0003407 "neural retina development"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005102 "receptor binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006337
"nucleosome disassembly" evidence=IEA;ISO] [GO:0006338 "chromatin
remodeling" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IEA;ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA;ISO] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity"
evidence=IEA;ISO] [GO:0035257 "nuclear hormone receptor binding"
evidence=IEA;ISO] [GO:0042692 "muscle cell differentiation"
evidence=IEA;ISO] [GO:0043393 "regulation of protein binding"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0071564 "npBAF
complex" evidence=IEA;ISO] [GO:0071565 "nBAF complex"
evidence=IEA;ISO] InterPro:IPR003121 Pfam:PF02201 RGD:1311869
EMBL:CH474020 SUPFAM:SSF47592 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 HOVERGEN:HBG054046 CTD:6604
OrthoDB:EOG4QFWD6 EMBL:BC085349 IPI:IPI00951770
RefSeq:NP_001011966.1 UniGene:Rn.20043 SMR:Q5U3Y2 STRING:Q5U3Y2
Ensembl:ENSRNOT00000066598 GeneID:296732 KEGG:rno:296732
InParanoid:Q5U3Y2 NextBio:641725 Genevestigator:Q5U3Y2
Uniprot:Q5U3Y2
Length = 470
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 128/189 (67%), Positives = 154/189 (81%)
Query: 198 LEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELDKDL 257
+ ++ N E +GS+ASWELRVEG+LL+D P+K LVIELDKDL
Sbjct: 148 ISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD----PSKQKRKFSSFFKSLVIELDKDL 203
Query: 258 YGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVH 317
YGPDNHLVEWHRTPTTQETDGFQVKRPGD +VRCT+LL+LDYQP QFKLDPRLARLLG+H
Sbjct: 204 YGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLH 263
Query: 318 TQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPP 377
TQ+R I+ ALWQY+KT++LQD+H++E+IN DK+F+QIF CPR+KF+EIPQRL LL PP
Sbjct: 264 TQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTGLLLPP 323
Query: 378 DPIVINHII 386
DPIVINH+I
Sbjct: 324 DPIVINHVI 332
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 82/147 (55%), Positives = 96/147 (65%)
Query: 65 GMRPSGPVNPNIANKRPSDARPPNNLKNDYQH----XXXXXXXXXXXXXLADKILPQKVR 120
G+ P+G + P A KR A PP + Q +ADKILPQ++R
Sbjct: 46 GLAPAG-MEP--ARKRA--APPPGQSQAQGQGQPVPTAPARSRSAKRRKMADKILPQRIR 100
Query: 121 DLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXX 180
+LVPESQAYMDLLAFERKLD TIMRKR+DIQEALKRPMKQKRKLR++ISNTF PAK
Sbjct: 101 ELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAE 160
Query: 181 XXXXXVASWELRVEGRLLEDSKNDPNK 207
+ASWELRVEG+LL+D K
Sbjct: 161 DSDGSIASWELRVEGKLLDDPSKQKRK 187
>UNIPROTKB|Q92925 [details] [associations]
symbol:SMARCD2 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 2"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0003713 "transcription
coactivator activity" evidence=NAS] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IDA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0006357
GO:GO:0006351 GO:GO:0006338 GO:GO:0003713 GO:GO:0016514
EMBL:CH471109 GO:GO:0006337 SUPFAM:SSF47592 EMBL:AC015651
eggNOG:COG5531 KO:K11650 HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI
EMBL:U66618 EMBL:AK300939 EMBL:AK303951 EMBL:BC018953 EMBL:BC142963
EMBL:AF113019 IPI:IPI00514042 IPI:IPI00853043 IPI:IPI00939917
RefSeq:NP_001091896.1 UniGene:Hs.250581 ProteinModelPortal:Q92925
SMR:Q92925 DIP:DIP-31182N IntAct:Q92925 MINT:MINT-1138034
STRING:Q92925 PhosphoSite:Q92925 DMDM:57013095 PaxDb:Q92925
PRIDE:Q92925 Ensembl:ENST00000323347 Ensembl:ENST00000448276
GeneID:6603 KEGG:hsa:6603 UCSC:uc010dea.1 UCSC:uc010wpt.1
GeneCards:GC17M061909 H-InvDB:HIX0014075 HGNC:HGNC:11107 MIM:601736
neXtProt:NX_Q92925 PharmGKB:PA35957 OrthoDB:EOG4WQ12P
ChiTaRS:SMARCD2 GenomeRNAi:6603 NextBio:25689 ArrayExpress:Q92925
Bgee:Q92925 CleanEx:HS_SMARCD2 Genevestigator:Q92925
GermOnline:ENSG00000108604 Uniprot:Q92925
Length = 531
Score = 642 (231.1 bits), Expect = 5.1e-68, Sum P(3) = 5.1e-68
Identities = 123/188 (65%), Positives = 144/188 (76%)
Query: 200 DSKNDPNKSGEGEEGS-VASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELDKDLY 258
DS G G VASWELRVEG+LL+D P+K LVIELDK+LY
Sbjct: 210 DSAGTAGTPGGTPAGDKVASWELRVEGKLLDD----PSKQKRKFSSFFKSLVIELDKELY 265
Query: 259 GPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHT 318
GPDNHLVEWHR PTTQETDGFQVKRPGD NV+CT+LL+LD+QP Q+KLDPRLARLLGVHT
Sbjct: 266 GPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHT 325
Query: 319 QTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPD 378
QTR I+ ALW YIK ++LQD HERE+INC+++F QIFSC R++F+EIP +L LL PD
Sbjct: 326 QTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPD 385
Query: 379 PIVINHII 386
PIVINH+I
Sbjct: 386 PIVINHVI 393
Score = 316 (116.3 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 65/109 (59%), Positives = 79/109 (72%)
Query: 110 LADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFIS 169
+ADK+LPQ++R+LVPESQAYMDLLAFERKLD TI RKR++IQEA+K+P+ QKRKLRI+IS
Sbjct: 140 MADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYIS 199
Query: 170 NTFYPAKXXXXXXXXX-----------VASWELRVEGRLLEDSKNDPNK 207
NTF P+K VASWELRVEG+LL+D K
Sbjct: 200 NTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRK 248
Score = 40 (19.1 bits), Expect = 5.1e-68, Sum P(3) = 5.1e-68
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 67 RPSGPVNPNIANKRPSDARPPNNL 90
RP GP P +RP + P N +
Sbjct: 60 RPMGPAGPAAQYQRPGMS-PGNRM 82
Score = 39 (18.8 bits), Expect = 5.1e-68, Sum P(3) = 5.1e-68
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 19 PPPSGPPMRYG 29
PPP+GP M G
Sbjct: 29 PPPAGPGMLPG 39
>RGD|69289 [details] [associations]
symbol:Smarcd2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 2"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006337 "nucleosome disassembly" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA;ISO] InterPro:IPR003121 Pfam:PF02201 RGD:69289
GO:GO:0006355 GO:GO:0006351 GO:GO:0006338 GO:GO:0016514
GO:GO:0006337 SUPFAM:SSF47592 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI OrthoDB:EOG4WQ12P
EMBL:AB003504 EMBL:AB003505 EMBL:BC062063 IPI:IPI00198069 PIR:JC6508
RefSeq:NP_114189.1 UniGene:Rn.3053 ProteinModelPortal:O54772
STRING:O54772 PhosphoSite:O54772 Ensembl:ENSRNOT00000014508
GeneID:83833 KEGG:rno:83833 InParanoid:O54772 NextBio:616469
Genevestigator:O54772 GermOnline:ENSRNOG00000010557 Uniprot:O54772
Length = 531
Score = 643 (231.4 bits), Expect = 8.3e-68, Sum P(3) = 8.3e-68
Identities = 126/193 (65%), Positives = 148/193 (76%)
Query: 201 SKNDPNKSGE-GEEGS------VASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIEL 253
SK D + SG G G VASWELRVEG+LL+D P+K LVIEL
Sbjct: 205 SKADGDNSGTAGTPGGTPAADKVASWELRVEGKLLDD----PSKQKRKFSSFFKSLVIEL 260
Query: 254 DKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARL 313
DK+LYGPDNHLVEWHR PTTQETDGFQVKRPGD NV+CT+LL+LD+QP Q+KLDPRLARL
Sbjct: 261 DKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARL 320
Query: 314 LGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPL 373
LGVHTQTR I+ ALW YIK ++LQD HERE+INC+++F QIFSC R++F+EIP +L L
Sbjct: 321 LGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGL 380
Query: 374 LHPPDPIVINHII 386
L PDPIVINH+I
Sbjct: 381 LQHPDPIVINHVI 393
Score = 315 (115.9 bits), Expect = 4.0e-32, Sum P(3) = 4.0e-32
Identities = 65/109 (59%), Positives = 79/109 (72%)
Query: 110 LADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFIS 169
+ADK+LPQ++R+LVPESQAYMDLLAFERKLD TI RKR++IQEA+K+P+ QKRKLRI+IS
Sbjct: 140 MADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYIS 199
Query: 170 NTFYPAKXXXXXXXXX-----------VASWELRVEGRLLEDSKNDPNK 207
NTF P+K VASWELRVEG+LL+D K
Sbjct: 200 NTFSPSKADGDNSGTAGTPGGTPAADKVASWELRVEGKLLDDPSKQKRK 248
Score = 38 (18.4 bits), Expect = 8.3e-68, Sum P(3) = 8.3e-68
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 19 PPPSGPPM 26
PPP+GP M
Sbjct: 29 PPPAGPGM 36
Score = 38 (18.4 bits), Expect = 8.3e-68, Sum P(3) = 8.3e-68
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 67 RPSGPVNPNIANKRP 81
RP GP P +RP
Sbjct: 60 RPMGPAGPAAQYQRP 74
>UNIPROTKB|E1BJD1 [details] [associations]
symbol:SMARCD2 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 2"
species:9913 "Bos taurus" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0006355 GO:GO:0006351
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 KO:K11650 EMBL:AAFC03085035
IPI:IPI00703184 RefSeq:NP_001192391.1 UniGene:Bt.1380
Ensembl:ENSBTAT00000028049 GeneID:789613 KEGG:bta:789613 CTD:6603
OMA:TQTRASI NextBio:20929791 Uniprot:E1BJD1
Length = 531
Score = 641 (230.7 bits), Expect = 1.1e-67, Sum P(3) = 1.1e-67
Identities = 121/182 (66%), Positives = 145/182 (79%)
Query: 205 PNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELDKDLYGPDNHL 264
P + G++ VASWELRVEG+LL+D P+K LVIELDK+LYGPDNHL
Sbjct: 218 PGGTPAGDK--VASWELRVEGKLLDD----PSKQKRKFSSFFKSLVIELDKELYGPDNHL 271
Query: 265 VEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVI 324
VEWHR PTTQETDGFQVKRPGD NV+CT+LL+LD+QP Q+KLDPRLARLLGVHTQTR I
Sbjct: 272 VEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAI 331
Query: 325 ISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINH 384
+ ALW YIK ++LQD HERE+INC+++F QIFSC R++F+EIP +L LL PDPIVINH
Sbjct: 332 MQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINH 391
Query: 385 II 386
+I
Sbjct: 392 VI 393
Score = 316 (116.3 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 65/109 (59%), Positives = 79/109 (72%)
Query: 110 LADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFIS 169
+ADK+LPQ++R+LVPESQAYMDLLAFERKLD TI RKR++IQEA+K+P+ QKRKLRI+IS
Sbjct: 140 MADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYIS 199
Query: 170 NTFYPAKXXXXXXXXX-----------VASWELRVEGRLLEDSKNDPNK 207
NTF P+K VASWELRVEG+LL+D K
Sbjct: 200 NTFSPSKAEGDTAGTTGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRK 248
Score = 39 (18.8 bits), Expect = 1.1e-67, Sum P(3) = 1.1e-67
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 19 PPPSGPPMRYG 29
PPP+GP M G
Sbjct: 29 PPPAGPGMLPG 39
Score = 38 (18.4 bits), Expect = 1.1e-67, Sum P(3) = 1.1e-67
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 67 RPSGPVNPNIANKRP 81
RP GP P +RP
Sbjct: 60 RPMGPAGPAAQYQRP 74
>UNIPROTKB|F1RSJ9 [details] [associations]
symbol:SMARCD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 OMA:TQTRASI EMBL:CU466386
Ensembl:ENSSSCT00000018818 Uniprot:F1RSJ9
Length = 531
Score = 634 (228.2 bits), Expect = 5.7e-67, Sum P(3) = 5.7e-67
Identities = 121/186 (65%), Positives = 145/186 (77%)
Query: 201 SKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELDKDLYGP 260
S P + G++ VASWELRVEG+LL+D P+K LVIELDK+LYGP
Sbjct: 214 SAGTPGGTPAGDK--VASWELRVEGKLLDD----PSKQKRKFSSFFKSLVIELDKELYGP 267
Query: 261 DNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQT 320
DNHLVEWHR TTQETDGFQVKRPGD NV+CT+LL+LD+QP Q+KLDPRLARLLGVHTQT
Sbjct: 268 DNHLVEWHRMXTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQT 327
Query: 321 RPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPI 380
R I+ ALW YIK ++LQD HERE+INC+++F QIFSC R++F+EIP +L LL PDPI
Sbjct: 328 RAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPI 387
Query: 381 VINHII 386
VINH+I
Sbjct: 388 VINHVI 393
Score = 316 (116.3 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 65/109 (59%), Positives = 79/109 (72%)
Query: 110 LADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFIS 169
+ADK+LPQ++R+LVPESQAYMDLLAFERKLD TI RKR++IQEA+K+P+ QKRKLRI+IS
Sbjct: 140 MADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYIS 199
Query: 170 NTFYPAKXXXXXXXXX-----------VASWELRVEGRLLEDSKNDPNK 207
NTF P+K VASWELRVEG+LL+D K
Sbjct: 200 NTFSPSKAEGDSAGSAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRK 248
Score = 39 (18.8 bits), Expect = 5.7e-67, Sum P(3) = 5.7e-67
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 19 PPPSGPPMRYG 29
PPP+GP M G
Sbjct: 29 PPPAGPGMLPG 39
Score = 38 (18.4 bits), Expect = 5.7e-67, Sum P(3) = 5.7e-67
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 67 RPSGPVNPNIANKRP 81
RP GP P +RP
Sbjct: 60 RPMGPAGPAAQYQRP 74
>UNIPROTKB|E1C555 [details] [associations]
symbol:SMARCD2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:TQTRASI EMBL:AADN02056697 EMBL:AADN02056698 EMBL:AADN02056699
EMBL:AADN02056700 EMBL:AADN02056701 EMBL:AADN02056702
IPI:IPI00593811 Ensembl:ENSGALT00000000495 NextBio:20829314
Uniprot:E1C555
Length = 475
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 125/183 (68%), Positives = 146/183 (79%)
Query: 205 PNKSGEGEEGS-VASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELDKDLYGPDNH 263
P K EGE G VASWELRVEG+LLED P+K LVIELDK+LYGPDNH
Sbjct: 160 PAKE-EGEGGERVASWELRVEGKLLED----PSKQKRKFSSFFKSLVIELDKELYGPDNH 214
Query: 264 LVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPV 323
LVEWHR PTTQETDGFQVKRPGD NV+CT+LL+LD+QP Q+KLDPRLARLLGVHTQTR
Sbjct: 215 LVEWHRLPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAS 274
Query: 324 IISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVIN 383
I+ ALW YIK +KLQD+HE+E+INC+++F QIF+C RM+F+EIP +L LL PDPI+IN
Sbjct: 275 IMQALWLYIKHNKLQDSHEKEYINCNRYFRQIFNCVRMRFSEIPMKLAGLLQHPDPIIIN 334
Query: 384 HII 386
H I
Sbjct: 335 HTI 337
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 67/98 (68%), Positives = 79/98 (80%)
Query: 110 LADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFIS 169
+ADK+LPQ++R+LVPESQAYMDLLAFERKLD TI RKR++IQEA+K+P+ QKRKLRI+IS
Sbjct: 96 MADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYIS 155
Query: 170 NTFYPAKXXXXXXXXXVASWELRVEGRLLEDSKNDPNK 207
NTF PAK VASWELRVEG+LLED K
Sbjct: 156 NTFTPAKEEGEGGER-VASWELRVEGKLLEDPSKQKRK 192
>WB|WBGene00044072 [details] [associations]
symbol:ham-3 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0070603 "SWI/SNF superfamily-type complex"
evidence=ISS] [GO:0001085 "RNA polymerase II transcription factor
binding" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0010171 GO:GO:0040011
GO:GO:0006357 GO:GO:0040035 GO:GO:0007413 GO:GO:0001085
SUPFAM:SSF47592 EMBL:Z47357 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 OMA:MRFMEIP GO:GO:0070603
PIR:T27696 RefSeq:NP_499250.1 ProteinModelPortal:Q09646 SMR:Q09646
STRING:Q09646 PaxDb:Q09646 EnsemblMetazoa:ZK1128.5 GeneID:176426
KEGG:cel:CELE_ZK1128.5 UCSC:ZK1128.5 CTD:176426 WormBase:ZK1128.5
InParanoid:Q09646 NextBio:892530 Uniprot:Q09646
Length = 446
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 118/190 (62%), Positives = 142/190 (74%)
Query: 204 DPNKSGEGEEGSVASWELRVEGRLLEDSKN-----DPNKV-XXXXXXXXXXLVIELDKDL 257
+P K EG++ SV WELRVEGRLL+D ++ +P LVIELDKD+
Sbjct: 121 EPEK--EGDDASVPMWELRVEGRLLDDMQHPTVGANPRPAPKRKFSSFFKSLVIELDKDI 178
Query: 258 YGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVH 317
YGPDNHLVEWHRTP T ETDGFQVKRPGD+ V+CTILLLLDYQP++FKL PRLA++LG+
Sbjct: 179 YGPDNHLVEWHRTPQTNETDGFQVKRPGDRPVKCTILLLLDYQPMKFKLHPRLAKVLGIA 238
Query: 318 TQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPP 377
+TRP II ALWQYIKTHKLQD +R+ IN D F EQ F +M+F EIPQRL+ LL P
Sbjct: 239 AETRPRIIEALWQYIKTHKLQDPQDRDTINNDLFLEQCFGVSKMRFMEIPQRLHQLLQQP 298
Query: 378 DPIVINHIIR 387
DP+V+NHII+
Sbjct: 299 DPLVLNHIIQ 308
Score = 291 (107.5 bits), Expect = 1.6e-25, P = 1.6e-25
Identities = 59/94 (62%), Positives = 73/94 (77%)
Query: 111 ADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISN 170
ADK++ KVR+LVPESQAYMDLLAFE+KLDSTI RK++D+QEALKRP K K++LRI+IS+
Sbjct: 55 ADKLIQPKVRELVPESQAYMDLLAFEQKLDSTITRKKIDVQEALKRPQKIKKRLRIYISH 114
Query: 171 TFYPAKX-XXXXXXXXVASWELRVEGRLLEDSKN 203
TF K V WELRVEGRLL+D ++
Sbjct: 115 TFIAGKEPEKEGDDASVPMWELRVEGRLLDDMQH 148
>WB|WBGene00015971 [details] [associations]
symbol:swsn-2.2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0070603 "SWI/SNF superfamily-type
complex" evidence=ISS] [GO:0001085 "RNA polymerase II transcription
factor binding" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006357 GO:GO:0040035 GO:GO:0001085
SUPFAM:SSF47592 EMBL:FO080611 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 OMA:TDKNIPD PIR:T15185
RefSeq:NP_491329.2 ProteinModelPortal:O02101 SMR:O02101
MINT:MINT-6668665 STRING:O02101 PaxDb:O02101
EnsemblMetazoa:C18E3.2.1 EnsemblMetazoa:C18E3.2.2
EnsemblMetazoa:C18E3.2.3 GeneID:172018 KEGG:cel:CELE_C18E3.2
UCSC:C18E3.2.2 CTD:172018 WormBase:C18E3.2 InParanoid:O02101
NextBio:873681 GO:GO:0070603 Uniprot:O02101
Length = 449
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 107/192 (55%), Positives = 129/192 (67%)
Query: 202 KNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDP-----NKV-XXXXXXXXXXLVIELDK 255
+ P K + +E S+ WELRVEGRLL++ P V LVIELDK
Sbjct: 122 EKQPEK--DTDEASLPMWELRVEGRLLDEQPPAPAIPGQRPVPKRKFSSFFKSLVIELDK 179
Query: 256 DLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLG 315
++YGPD HLVEWHRTP T ETDGFQVKR GD+ V+C ILLLLD P +FKL PRLA++LG
Sbjct: 180 EMYGPDQHLVEWHRTPQTNETDGFQVKRAGDRPVKCRILLLLDNHPAKFKLHPRLAKVLG 239
Query: 316 VHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLH 375
+ T+TRP II ALWQYIKTH LQD ER+ INCD F Q F RM+F E+P +L+ LL
Sbjct: 240 IATETRPKIIEALWQYIKTHGLQDPQERDIINCDTFLSQCFGVNRMRFMEVPNKLHQLLQ 299
Query: 376 PPDPIVINHIIR 387
DP+ NHII+
Sbjct: 300 QTDPLEFNHIIQ 311
Score = 246 (91.7 bits), Expect = 2.2e-20, P = 2.2e-20
Identities = 52/101 (51%), Positives = 69/101 (68%)
Query: 111 ADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISN 170
ADK + K+R+L P+++ YM LLA E+KLDST+ RK+LDIQEALKRP K K++LRI+IS+
Sbjct: 58 ADKCIHPKIRELEPDAENYMALLASEQKLDSTLSRKKLDIQEALKRPSKVKKRLRIYISH 117
Query: 171 TFYPAKX-XXXXXXXXVASWELRVEGRLLEDSKNDPNKSGE 210
TF K + WELRVEGRLL++ P G+
Sbjct: 118 TFIEEKQPEKDTDEASLPMWELRVEGRLLDEQPPAPAIPGQ 158
>TAIR|locus:2078713 [details] [associations]
symbol:AT3G01890 "AT3G01890" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF47592 eggNOG:COG5531
HOGENOM:HOG000240746 KO:K11650 ProtClustDB:CLSN2687209
EMBL:BT026139 IPI:IPI00520994 RefSeq:NP_566154.2 UniGene:At.45849
ProteinModelPortal:Q147F4 SMR:Q147F4 EnsemblPlants:AT3G01890.1
GeneID:820093 KEGG:ath:AT3G01890 TAIR:At3g01890 InParanoid:Q147F4
OMA:PAISACY PhylomeDB:Q147F4 Genevestigator:Q147F4 Uniprot:Q147F4
Length = 458
Score = 320 (117.7 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
Identities = 64/175 (36%), Positives = 98/175 (56%)
Query: 218 SWELRVEGRLLEDSKN-----DPNKVXXXXXXXXXXLVIELDKDLYGPDNHLVEWHRTPT 272
+W LR+ GR+L+ + N + L I LD+ LY P+NHL+EW R +
Sbjct: 160 TWTLRIFGRVLDPDHTGGLVQNSNPLYPKFSSFFKTLKISLDQSLY-PENHLIEWKRDRS 218
Query: 273 TQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYI 332
+GF++KR G + TILL ++Y P +FK P L ++LG+ TRP II+A+W Y+
Sbjct: 219 PAPLEGFEIKRIGCQEFAATILLEMNYVPEKFKTSPALMQVLGIEVDTRPRIIAAIWHYV 278
Query: 333 KTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHIIR 387
K KLQ+ ++ F NCD +F +MKF + +++ L PP PI + H I+
Sbjct: 279 KVRKLQNPNDPSFFNCDAALHSVFGEEKMKFTMLSHKISQHLSPPPPIQLVHKIK 333
Score = 150 (57.9 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
Identities = 37/101 (36%), Positives = 58/101 (57%)
Query: 110 LADKI-LPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFI 168
L DK L ++V ++PES Y LL FE ++D+ + RK++DIQ++LK P ++ LRI++
Sbjct: 86 LPDKSSLQERVAAVLPESALYTQLLEFESRVDAALFRKKVDIQDSLKNPPSIQKTLRIYV 145
Query: 169 SNTFYPAKXXXXXXXXXVASWELRVEGRLLEDSKNDPNKSG 209
NTF +W LR+ GR+L DP+ +G
Sbjct: 146 FNTF-----SNQIPGPDPPTWTLRIFGRVL-----DPDHTG 176
>TAIR|locus:2174638 [details] [associations]
symbol:CHC1 "AT5G14170" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0048364 "root development"
evidence=IMP] [GO:0006281 "DNA repair" evidence=IMP] [GO:0010224
"response to UV-B" evidence=IEP] [GO:0000956 "nuclear-transcribed
mRNA catabolic process" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] InterPro:IPR003121
Pfam:PF02201 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
EMBL:AB007650 GO:GO:0048364 GO:GO:0010224 SUPFAM:SSF47592
eggNOG:COG5531 HOGENOM:HOG000240746 KO:K11650 OMA:NTFYPSK
EMBL:BT008892 EMBL:AY065106 IPI:IPI00539458 RefSeq:NP_196921.1
UniGene:At.6512 PDB:1V31 PDBsum:1V31 ProteinModelPortal:Q9FMT4
SMR:Q9FMT4 IntAct:Q9FMT4 STRING:Q9FMT4 PaxDb:Q9FMT4 PRIDE:Q9FMT4
EnsemblPlants:AT5G14170.1 GeneID:831267 KEGG:ath:AT5G14170
TAIR:At5g14170 InParanoid:Q9FMT4 PhylomeDB:Q9FMT4
ProtClustDB:CLSN2687209 EvolutionaryTrace:Q9FMT4
Genevestigator:Q9FMT4 GermOnline:AT5G14170 Uniprot:Q9FMT4
Length = 534
Score = 299 (110.3 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 64/181 (35%), Positives = 103/181 (56%)
Query: 218 SWELRVEGRLLEDSKNDP---------NKVXXXXXXXXXXLVIELDKDLYGPDNHLVEWH 268
+W L++ GR+LED DP N + + + LD+ LY P+N L+ W
Sbjct: 226 TWTLKIIGRILEDGV-DPDQPGFVQKANPLHPKFSSFFKRVTVSLDQRLY-PENPLIIWE 283
Query: 269 --RTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIIS 326
R+P QE GF++KR G++ +I L ++Y P +FKL L +LG+ +TRP II+
Sbjct: 284 NARSPAPQE--GFEIKRKGNQEFAASIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIIA 341
Query: 327 ALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
A+W Y+K KLQ+ ++ F NCD +++F ++KF + Q+++ L PP PI + H I
Sbjct: 342 AIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPPPIHLEHKI 401
Query: 387 R 387
+
Sbjct: 402 K 402
Score = 178 (67.7 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 43/131 (32%), Positives = 67/131 (51%)
Query: 80 RPSDARPPNNLKNDYQHXXXXXXXXXXXXXLADKILPQKVRDLVPESQAYMDLLAFERKL 139
RP A NN + + L +K L ++V ++PES Y LL FE ++
Sbjct: 117 RPPGAPASNNTISPMRTMELTPAARKKKQKLPEKSLQERVAAILPESALYTQLLEFESRV 176
Query: 140 DSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXXXX-XXXVASWELRVEGRLL 198
D+ + RK++DIQEALK P ++ LRI++ N+F +W L++ GR+L
Sbjct: 177 DAALTRKKVDIQEALKNPPCIQKTLRIYVFNSFANQNNTIPGNPNADPPTWTLKIIGRIL 236
Query: 199 EDSKNDPNKSG 209
ED DP++ G
Sbjct: 237 EDGV-DPDQPG 246
>UNIPROTKB|F1SHA1 [details] [associations]
symbol:SMARCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=IEA] [GO:0032947 "protein complex
scaffold" evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0048096 GO:GO:0006337
GeneTree:ENSGT00390000017809 EMBL:CU457393
Ensembl:ENSSSCT00000000230 OMA:XWHRTAT ArrayExpress:F1SHA1
Uniprot:F1SHA1
Length = 513
Score = 407 (148.3 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 88/150 (58%), Positives = 98/150 (65%)
Query: 196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLEDS---KNDPNKVXXXXXXXXXXLVI 251
R+ + +P KS E EG+VASWELRVEGRLLEDS K D K LVI
Sbjct: 183 RIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVI 242
Query: 252 ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLA 311
ELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQ + L L
Sbjct: 243 ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQEPPYFLGTELL 302
Query: 312 RLLGVHTQTRPVIISALWQYIKTHKLQDAH 341
R LG+ QTR ALW +I T +H
Sbjct: 303 RPLGISRQTRLRSCVALWTFIATATQDPSH 332
Score = 389 (142.0 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 87/140 (62%), Positives = 95/140 (67%)
Query: 65 GMRPSGPVNPNIANKR--PSDARP-PNNLKNDYQHXXXXXXXXXXXXXLADKILPQKVRD 121
G PS V P +A S RP P ++ Q +ADKILPQ++R+
Sbjct: 82 GGNPS--VRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRE 139
Query: 122 LVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXXX 181
LVPESQAYMDLLAFERKLD TIMRKRLDIQEALKRP+KQKRKLRIFISNTF PAK
Sbjct: 140 LVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAED 199
Query: 182 XXXXVASWELRVEGRLLEDS 201
VASWELRVEGRLLEDS
Sbjct: 200 GEGTVASWELRVEGRLLEDS 219
Score = 38 (18.4 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 7 GSQNTNQAPLRYPPPSG--PPMRYG 29
GS+ T Q P PP G P +R G
Sbjct: 66 GSRMTPQGPSMGPPGYGGNPSVRPG 90
>POMBASE|SPAC23G3.10c [details] [associations]
symbol:ssr3 "SWI/SNF and RSC complex subunit Ssr3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IC]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0016586 "RSC
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
PomBase:SPAC23G3.10c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006338 GO:GO:0000790
GO:GO:0016514 GO:GO:0016586 GO:GO:0000991 SUPFAM:SSF47592
eggNOG:COG5531 OrthoDB:EOG4N8VDJ KO:K11650 OMA:PLKSQMS PIR:T50184
RefSeq:NP_593110.1 HSSP:Q61466 ProteinModelPortal:Q9P7S3
DIP:DIP-48385N STRING:Q9P7S3 EnsemblFungi:SPAC23G3.10c.1
GeneID:2541438 KEGG:spo:SPAC23G3.10c NextBio:20802540
Uniprot:Q9P7S3
Length = 425
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 98/282 (34%), Positives = 148/282 (52%)
Query: 110 LADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFIS 169
+ ++ +P + + +PE++ Y+ L ERKLDS I+RKR D+Q++L R + R LR++I
Sbjct: 28 IIEREIPDSLLEKIPEAEDYIALQDLERKLDSLIVRKRFDLQDSLSRNSHKTRILRMYIH 87
Query: 170 NTFYPAKXXXXXXXXXVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLE 229
+T SW+ + E N N SG+ + W L +EGRLL
Sbjct: 88 STV------------ANQSWQQKGE--------NQENNSGDINSLPIPEWTLHIEGRLLV 127
Query: 230 DSKNDPNKVXXXX--XXXXXXLVIEL--DKDLYGPDNHLVEWHRTPTTQET-DGFQVKRP 284
+ ++ +K + I++ DLY P + VEW++ P T +G V R
Sbjct: 128 NPDDEDDKAFELAPFTNFFRKIAIQILRSDDLY-PSGNYVEWNKLPDNSNTSNGITVTRK 186
Query: 285 GDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHERE 344
GD++V I+L + P ++KL A +LG+ TRP I+S LWQYIK H+LQD E+
Sbjct: 187 GDQSVDVKIMLYPEEHPERYKLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKR 246
Query: 345 FINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
INCDK +F R+ F IP+ +N L P DPIVI + I
Sbjct: 247 LINCDKALRDLFEADRLYFPRIPELMNRFLEPIDPIVIPYTI 288
>DICTYBASE|DDB_G0273725 [details] [associations]
symbol:snf12-2 "SWI/SNF protein SNF12" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003121 Pfam:PF02201
dictyBase:DDB_G0273725 dictyBase:DDB_G0273203 GO:GO:0005654
GO:GO:0006355 GenomeReviews:CM000151_GR GO:GO:0006351 GO:GO:0016568
EMBL:AAFI02000011 EMBL:AAFI02000009 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11650 RefSeq:XP_644479.1 RefSeq:XP_644771.1
ProteinModelPortal:Q556Z0 PRIDE:Q556Z0 EnsemblProtists:DDB0233489
EnsemblProtists:DDB0266583 GeneID:8618873 GeneID:8619103
KEGG:ddi:DDB_G0273203 KEGG:ddi:DDB_G0273725 OMA:MRFMEIP
ProtClustDB:CLSZ2428982 Uniprot:Q556Z0
Length = 456
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 99/332 (29%), Positives = 159/332 (47%)
Query: 64 TGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHXXXXXXXXXXXXXLADKI-LP-QKVRD 121
T + + + NIA K + NN N+ + L + LP +++
Sbjct: 14 TKLSTAATIAANIA-KANATLNNNNNSNNNSNNTNIGNSINGIPSSLPPSVTLPVEELIS 72
Query: 122 LVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXXX 181
PE + LL FE KLD++I ++ +DIQEA +R + +R + + Y
Sbjct: 73 FAPECLLFSQLLEFEEKLDASINKRLIDIQEASRR--NSIKNIRT-LRLSIYNTYSNQS- 128
Query: 182 XXXXVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKND-PNKVXX 240
A + L + + L + P SW LRVEG+LL++S+++ NK
Sbjct: 129 -----AYYHL--DNKSLNSVQERP------------SWSLRVEGKLLDESQDELVNKSIK 169
Query: 241 XXXXXXXXL----VIELDKDLYGPDNH--LVEWHRTPTTQETDGFQVKRPGDKNVRCTIL 294
K ++ H EW ++ T ETDGF++KR G++ V IL
Sbjct: 170 SSSSSSSTANKRKFSSFFKKVFIQIGHRDTCEWDKSQTFTETDGFEIKRNGNQEVDIKIL 229
Query: 295 LLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQ 354
+ LD+ P ++K+ L++LL +HT T+P II ALW YIK++ L DA ++ I CD+ +
Sbjct: 230 MYLDHVPQKYKVLGGLSQLLNIHTDTKPRIILALWHYIKSNTLLDAETKK-ITCDENLKN 288
Query: 355 IFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
IFS ++F +IPQ L L PPDP+ + +
Sbjct: 289 IFSLEELQFNQIPQLLREHLSPPDPLEFQYTL 320
>DICTYBASE|DDB_G0273203 [details] [associations]
symbol:snf12-1 "SWI/SNF protein SNF12" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003121 Pfam:PF02201
dictyBase:DDB_G0273725 dictyBase:DDB_G0273203 GO:GO:0005654
GO:GO:0006355 GenomeReviews:CM000151_GR GO:GO:0006351 GO:GO:0016568
EMBL:AAFI02000011 EMBL:AAFI02000009 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11650 RefSeq:XP_644479.1 RefSeq:XP_644771.1
ProteinModelPortal:Q556Z0 PRIDE:Q556Z0 EnsemblProtists:DDB0233489
EnsemblProtists:DDB0266583 GeneID:8618873 GeneID:8619103
KEGG:ddi:DDB_G0273203 KEGG:ddi:DDB_G0273725 OMA:MRFMEIP
ProtClustDB:CLSZ2428982 Uniprot:Q556Z0
Length = 456
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 99/332 (29%), Positives = 159/332 (47%)
Query: 64 TGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHXXXXXXXXXXXXXLADKI-LP-QKVRD 121
T + + + NIA K + NN N+ + L + LP +++
Sbjct: 14 TKLSTAATIAANIA-KANATLNNNNNSNNNSNNTNIGNSINGIPSSLPPSVTLPVEELIS 72
Query: 122 LVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKXXXXX 181
PE + LL FE KLD++I ++ +DIQEA +R + +R + + Y
Sbjct: 73 FAPECLLFSQLLEFEEKLDASINKRLIDIQEASRR--NSIKNIRT-LRLSIYNTYSNQS- 128
Query: 182 XXXXVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKND-PNKVXX 240
A + L + + L + P SW LRVEG+LL++S+++ NK
Sbjct: 129 -----AYYHL--DNKSLNSVQERP------------SWSLRVEGKLLDESQDELVNKSIK 169
Query: 241 XXXXXXXXL----VIELDKDLYGPDNH--LVEWHRTPTTQETDGFQVKRPGDKNVRCTIL 294
K ++ H EW ++ T ETDGF++KR G++ V IL
Sbjct: 170 SSSSSSSTANKRKFSSFFKKVFIQIGHRDTCEWDKSQTFTETDGFEIKRNGNQEVDIKIL 229
Query: 295 LLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQ 354
+ LD+ P ++K+ L++LL +HT T+P II ALW YIK++ L DA ++ I CD+ +
Sbjct: 230 MYLDHVPQKYKVLGGLSQLLNIHTDTKPRIILALWHYIKSNTLLDAETKK-ITCDENLKN 288
Query: 355 IFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
IFS ++F +IPQ L L PPDP+ + +
Sbjct: 289 IFSLEELQFNQIPQLLREHLSPPDPLEFQYTL 320
>ASPGD|ASPL0000017588 [details] [associations]
symbol:AN10524 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0016586 "RSC
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003121 Pfam:PF02201
EMBL:BN001302 SUPFAM:SSF47592 EnsemblFungi:CADANIAT00004436
OMA:TDKNIPD Uniprot:C8V4A6
Length = 472
Score = 216 (81.1 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 58/212 (27%), Positives = 93/212 (43%)
Query: 189 WELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKN--DPNKVXXXXXXXX 246
+++R+EGRLLED + K + E G+ + E D K +
Sbjct: 122 YKVRIEGRLLEDVSDLAEKDSDDEGGAQGPGDAMAEDG--SDGKKAATTKRSEQRFSHFF 179
Query: 247 XXLVIELDKD-LYGP-DNHLVEWHRT---------PTTQETDGFQVKRPGDKNVRCTILL 295
+ ++ DK P + + W + P + D Q R +N+ TI L
Sbjct: 180 KSITVDFDKSPSTSPAEMQTITWTKPQVPPNAVNLPPNADFDSVQFSRASQENLNVTISL 239
Query: 296 LLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQI 355
+ D P ++KL LA +L V +TR I+ +W YI+ LQ+ E+ + CD I
Sbjct: 240 VRDETPERYKLSKELAEVLDVEEETRSGIVLGIWDYIRAMGLQEDEEKRLVRCDDRLRAI 299
Query: 356 FSCPRMKFAEIPQRLNPLLHPPDPIVINHIIR 387
F +M F +IP+ + P P DPI + + IR
Sbjct: 300 FGRDQMFFPQIPESIGPHTSPLDPIKLPYTIR 331
Score = 157 (60.3 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 46/145 (31%), Positives = 72/145 (49%)
Query: 81 PSDARPPNNL--KNDYQHXXXXXXXXXXXXXLADKILPQKVRDLV-PES-QAYMDLLAFE 136
P A PP + + + QH DK +P V D+V E Q Y L E
Sbjct: 6 PQHAVPPQYMAPQRNLQHQNDAALRRSRKPT--DKNIPDGVEDVVIGEGVQQYKSLRDLE 63
Query: 137 RKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTF--YPAKXXXXXXXXXVAS----WE 190
++LD+ I+RKRLDIQ+++ + +K+ R +RI++SNT P + ++
Sbjct: 64 KRLDAAIVRKRLDIQDSISKTVKKYRTMRIWVSNTVENQPWQTGQNGSVPGTTPGSGRYK 123
Query: 191 LRVEGRLLEDSKNDPNKSGEGEEGS 215
+R+EGRLLED + K + E G+
Sbjct: 124 VRIEGRLLEDVSDLAEKDSDDEGGA 148
>UNIPROTKB|F8VW95 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9606 "Homo sapiens" [GO:0071564 "npBAF complex"
evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
GO:GO:0071564 GO:GO:0071565 EMBL:AC025154 HGNC:HGNC:11106
ChiTaRS:SMARCD1 IPI:IPI01022482 Ensembl:ENST00000551497
ArrayExpress:F8VW95 Bgee:F8VW95 Uniprot:F8VW95
Length = 113
Score = 231 (86.4 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 54/96 (56%), Positives = 61/96 (63%)
Query: 65 GMRPSGPVNPNIANKR--PSDARP-PNNLKNDYQHXXXXXXXXXXXXXLADKILPQKVRD 121
G PS V P +A S RP P ++ Q +ADKILPQ++R+
Sbjct: 20 GGNPS--VRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRE 77
Query: 122 LVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRP 157
LVPESQAYMDLLAFERKLD TIMRKRLDIQEALKRP
Sbjct: 78 LVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRP 113
Score = 38 (18.4 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 7 GSQNTNQAPLRYPPPSG--PPMRYG 29
GS+ T Q P PP G P +R G
Sbjct: 4 GSRMTPQGPSMGPPGYGGNPSVRPG 28
>CGD|CAL0006320 [details] [associations]
symbol:orf19.2265 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0061412 "positive regulation of transcription
from RNA polymerase II promoter in response to amino acid
starvation" evidence=IEA] InterPro:IPR003121 CGD:CAL0006320
EMBL:AACQ01000095 EMBL:AACQ01000096 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11775 RefSeq:XP_714793.1 RefSeq:XP_714855.1
ProteinModelPortal:Q59Z35 STRING:Q59Z35 GeneID:3643504
GeneID:3643584 KEGG:cal:CaO19.2265 KEGG:cal:CaO19.9805
Uniprot:Q59Z35
Length = 469
Score = 149 (57.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 60/241 (24%), Positives = 101/241 (41%)
Query: 112 DKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLD---IQEALKRPMKQKRK---LR 165
D I+P ++ D + Y L E+KLD I RK LD IQ+ P + + LR
Sbjct: 35 DIIIPTQLYDKIGNLGEYKRLQEAEKKLDLLIARKSLDFQAIQQKSIHPHEYRPSTGVLR 94
Query: 166 IFISNTFYPAKXXXXXXXXXVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEG 225
IFI NT W+ + LL+ K P E +SW LR+EG
Sbjct: 95 IFIYNTCENQP------------WQKQ----LLQQ-KGLPVPDPTLAE---SSWTLRIEG 134
Query: 226 RLLEDSKNDPNKVXXXXXXXXXXLVIELD-------KDLYGPDNHLVEW-------HRTP 271
+ + D ++ ++ I +D ++ +H++EW ++ P
Sbjct: 135 KFISDIPDEQQQIDETFKFSSFLSAISVDLLPNENYPNIQESQSHIIEWRDDGPNANKPP 194
Query: 272 TTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQY 331
+ DG +KR G N++ I LL+ KL ++R +G ++ ++ +WQY
Sbjct: 195 ASVSFDGLDIKRNGIFNIKSKIALLVKNHSNSLKLSEEMSRFVGKQECSQQELLYIIWQY 254
Query: 332 I 332
+
Sbjct: 255 V 255
Score = 37 (18.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 346 INCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINH 384
+ D ++ KF+++ + P +PI++++
Sbjct: 295 VEADDLLFELLKVKTFKFSDLYKLTQAHFVPREPIIVDY 333
>UNIPROTKB|Q59Z35 [details] [associations]
symbol:SNF12 "Putative uncharacterized protein SNF12"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003121 CGD:CAL0006320
EMBL:AACQ01000095 EMBL:AACQ01000096 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11775 RefSeq:XP_714793.1 RefSeq:XP_714855.1
ProteinModelPortal:Q59Z35 STRING:Q59Z35 GeneID:3643504
GeneID:3643584 KEGG:cal:CaO19.2265 KEGG:cal:CaO19.9805
Uniprot:Q59Z35
Length = 469
Score = 149 (57.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 60/241 (24%), Positives = 101/241 (41%)
Query: 112 DKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLD---IQEALKRPMKQKRK---LR 165
D I+P ++ D + Y L E+KLD I RK LD IQ+ P + + LR
Sbjct: 35 DIIIPTQLYDKIGNLGEYKRLQEAEKKLDLLIARKSLDFQAIQQKSIHPHEYRPSTGVLR 94
Query: 166 IFISNTFYPAKXXXXXXXXXVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEG 225
IFI NT W+ + LL+ K P E +SW LR+EG
Sbjct: 95 IFIYNTCENQP------------WQKQ----LLQQ-KGLPVPDPTLAE---SSWTLRIEG 134
Query: 226 RLLEDSKNDPNKVXXXXXXXXXXLVIELD-------KDLYGPDNHLVEW-------HRTP 271
+ + D ++ ++ I +D ++ +H++EW ++ P
Sbjct: 135 KFISDIPDEQQQIDETFKFSSFLSAISVDLLPNENYPNIQESQSHIIEWRDDGPNANKPP 194
Query: 272 TTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQY 331
+ DG +KR G N++ I LL+ KL ++R +G ++ ++ +WQY
Sbjct: 195 ASVSFDGLDIKRNGIFNIKSKIALLVKNHSNSLKLSEEMSRFVGKQECSQQELLYIIWQY 254
Query: 332 I 332
+
Sbjct: 255 V 255
Score = 37 (18.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 346 INCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINH 384
+ D ++ KF+++ + P +PI++++
Sbjct: 295 VEADDLLFELLKVKTFKFSDLYKLTQAHFVPREPIIVDY 333
>SGD|S000000648 [details] [associations]
symbol:RSC6 "Component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0016586 "RSC
complex" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000086 "G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0006337
"nucleosome disassembly" evidence=IDA] [GO:0000080 "G1 phase of
mitotic cell cycle" evidence=IGI] [GO:0016584 "nucleosome
positioning" evidence=IDA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR003121 SGD:S000000648 GO:GO:0000086
EMBL:X59720 EMBL:BK006937 GO:GO:0006351 GO:GO:0006337 GO:GO:0016586
GO:GO:0043044 GO:GO:0016584 GO:GO:0000080 GO:GO:0032968
SUPFAM:SSF47592 EMBL:AY692985 PIR:S19466 RefSeq:NP_009981.1
ProteinModelPortal:P25632 DIP:DIP-4999N IntAct:P25632
MINT:MINT-493435 STRING:P25632 PaxDb:P25632 PeptideAtlas:P25632
EnsemblFungi:YCR052W GeneID:850419 KEGG:sce:YCR052W CYGD:YCR052w
eggNOG:COG5531 GeneTree:ENSGT00390000017809 HOGENOM:HOG000000860
KO:K11760 OMA:LHESANG OrthoDB:EOG4N8VDJ NextBio:965983
Genevestigator:P25632 GermOnline:YCR052W Uniprot:P25632
Length = 483
Score = 133 (51.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 57/231 (24%), Positives = 97/231 (41%)
Query: 125 ESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFY--PAKXXXXXX 182
E + +DL R+LD++I L K K LRI++ NT P
Sbjct: 38 EMDSRLDLYLTRRRLDTSI---NLPTNTKTKDHPPNKEMLRIYVYNTTESSPRSDSGTPA 94
Query: 183 XXXVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWE-LRVEG----RLLEDSKNDPNK 237
+W LR+EG+LL +S N + E EG ++ L+ G R + S + P
Sbjct: 95 DSGKTTWTLRIEGKLLHESANGKHPFSEFLEGVAVDFKRLKPLGMGKKRKRDSSLSLPLN 154
Query: 238 VXXXXXXXXXXLVIELD----KDLYGPDNH-----LVEWHRTPTTQ-ETDGFQVKRPGDK 287
+ + + D +D ++ +EW+ E DG +KR G
Sbjct: 155 LQQPEYNDQDSTMGDNDNGEDEDSAEAESREEIVDALEWNYDENNVVEFDGIDIKRQGKD 214
Query: 288 NVRCTILLLL-DYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKL 337
N+RC+I + L + + P LA L+G+ T + + ++++YI + L
Sbjct: 215 NLRCSITIQLRGVDGGKVQYSPNLATLIGMQTGSVNDAVYSIYKYILINNL 265
Score = 45 (20.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 338 QDAHEREFINCDKFFEQIF--SCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
+D E + D +++ + + + Q +N L+ P PI++++ I
Sbjct: 305 KDKPELGEVKLDSLLQKVLDTNAAHLPLMNVVQTVNKLVSPLPPIILDYTI 355
>POMBASE|SPCC285.17 [details] [associations]
symbol:spp27 "RNA polymerase I upstream activation factor
complex subunit Spp27" species:4896 "Schizosaccharomyces pombe"
[GO:0000500 "RNA polymerase I upstream activating factor complex"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045943 "positive
regulation of transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0001168 "RNA polymerase I upstream control
element sequence-specific DNA binding transcription factor
activity" evidence=TAS] InterPro:IPR003121 InterPro:IPR009057
Pfam:PF02201 PomBase:SPCC285.17 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF47592 GO:GO:0045943 InterPro:IPR014876
Pfam:PF08766 GO:GO:0000500 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 HSSP:Q61466 KO:K15223 OMA:DRREILC OrthoDB:EOG486CP2
PIR:T41263 RefSeq:NP_588345.1 ProteinModelPortal:O74503
STRING:O74503 PRIDE:O74503 EnsemblFungi:SPCC285.17.1 GeneID:2539310
KEGG:spo:SPCC285.17 NextBio:20800476 Uniprot:O74503
Length = 233
Score = 127 (49.8 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 305 KLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFA 364
KL P+LA LG+ +RP + LW+YIK H LQD +++ I CD + +F +
Sbjct: 122 KLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMF 181
Query: 365 EIPQRLNPLLHP-PD 378
+ + L L+ PD
Sbjct: 182 TMNKYLTNLMTKIPD 196
>ASPGD|ASPL0000053508 [details] [associations]
symbol:AN0360 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR003121
InterPro:IPR009057 Pfam:PF02201 EMBL:BN001308 GO:GO:0003677
Gene3D:1.10.10.60 EMBL:AACD01000006 SUPFAM:SSF47592
InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 KO:K15223 OrthoDB:EOG486CP2 RefSeq:XP_657964.1
ProteinModelPortal:Q5BGH0 EnsemblFungi:CADANIAT00002344
GeneID:2876138 KEGG:ani:AN0360.2 HOGENOM:HOG000213060 OMA:FRTFGML
Uniprot:Q5BGH0
Length = 279
Score = 122 (48.0 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 29/81 (35%), Positives = 42/81 (51%)
Query: 299 YQPLQFKLDPRLARLLG-VHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFS 357
++PL L P L+ LLG T +RP + LW+YI H LQD +R I CD +F
Sbjct: 200 HKPLN--LSPALSALLGGAATLSRPQTVKKLWEYIHEHDLQDPSDRRQIRCDDPMRAVFK 257
Query: 358 CPRMKFAEIPQRLNPLLHPPD 378
R+ + + L+ L+ PD
Sbjct: 258 QDRIHMFTMTKILSQNLYSPD 278
Score = 40 (19.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 64 TGMRPSGPVNPNIANKRPSDA 84
T + PS P + A KR +D+
Sbjct: 88 TPVEPSSPSQSSTAQKRQADS 108
>TAIR|locus:2096404 [details] [associations]
symbol:AT3G03590 "AT3G03590" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0006661 "phosphatidylinositol biosynthetic
process" evidence=RCA] InterPro:IPR003121 Pfam:PF02201
EMBL:CP002686 EMBL:AC009327 SUPFAM:SSF47592 InterPro:IPR019835
SMART:SM00151 EMBL:BT003701 EMBL:AK117771 IPI:IPI00546282
RefSeq:NP_566210.1 UniGene:At.40956 ProteinModelPortal:Q9SS61
SMR:Q9SS61 PRIDE:Q9SS61 EnsemblPlants:AT3G03590.1 GeneID:821215
KEGG:ath:AT3G03590 TAIR:At3g03590 InParanoid:Q9SS61 OMA:REIFCDE
PhylomeDB:Q9SS61 ProtClustDB:CLSN2917083 Genevestigator:Q9SS61
Uniprot:Q9SS61
Length = 143
Score = 105 (42.0 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 306 LDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCP-RMKFA 364
+ P LA+ LG +R I +W YIK+H LQ+ ++ I CD+ + IF ++ F
Sbjct: 70 VSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGFL 129
Query: 365 EIPQRLNP 372
EI + L+P
Sbjct: 130 EISKLLSP 137
>SGD|S000004846 [details] [associations]
symbol:TRI1 "Non-essential sumoylated protein of unknown
function" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005730 "nucleolus" evidence=IEA;IDA]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 SGD:S000004846
GO:GO:0005737 GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 EMBL:BK006946 EMBL:Z49939
SUPFAM:SSF47592 InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531
InterPro:IPR019835 SMART:SM00151 EMBL:AY557975 PIR:S57600
RefSeq:NP_013960.1 ProteinModelPortal:Q05024 SMR:Q05024
DIP:DIP-1551N IntAct:Q05024 MINT:MINT-386791 STRING:Q05024
PaxDb:Q05024 PeptideAtlas:Q05024 EnsemblFungi:YMR233W GeneID:855273
KEGG:sce:YMR233W CYGD:YMR233w GeneTree:ENSGT00390000006048
HOGENOM:HOG000000765 KO:K15223 OMA:DRREILC OrthoDB:EOG486CP2
NextBio:978891 Genevestigator:Q05024 GermOnline:YMR233W
Uniprot:Q05024
Length = 226
Score = 110 (43.8 bits), Expect = 0.00068, P = 0.00068
Identities = 27/76 (35%), Positives = 37/76 (48%)
Query: 306 LDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAE 365
L L + LG R ++ +WQYIK H LQ+ +R I CD+ E IF +M
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG-KKMTMFS 184
Query: 366 IPQRLNPLLHPPDPIV 381
+ + L L PD IV
Sbjct: 185 MNKLLTKHLFNPDEIV 200
>TAIR|locus:2028671 [details] [associations]
symbol:AT1G31760 "AT1G31760" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AC074360 EMBL:AC079041
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
HOGENOM:HOG000225318 ProtClustDB:CLSN2688164 EMBL:AY085089
EMBL:BT024754 IPI:IPI00536805 PIR:B86441 RefSeq:NP_564382.1
UniGene:At.40279 ProteinModelPortal:Q9C504 SMR:Q9C504 IntAct:Q9C504
STRING:Q9C504 PaxDb:Q9C504 PRIDE:Q9C504 EnsemblPlants:AT1G31760.1
GeneID:840063 KEGG:ath:AT1G31760 TAIR:At1g31760 InParanoid:Q9C504
OMA:GITEIMK PhylomeDB:Q9C504 Genevestigator:Q9C504 Uniprot:Q9C504
Length = 112
Score = 92 (37.4 bits), Expect = 0.00082, P = 0.00082
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 304 FKLDP---RLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCP- 359
FK P +LA G TR + +W+Y+K H LQ+ ++ I+CD + IF
Sbjct: 34 FKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKD 93
Query: 360 RMKFAEIPQRLNPLLHPPDPI 380
++ EI + L+P H P +
Sbjct: 94 KVGITEIMKLLSP--HFPKSV 112
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 392 334 0.00091 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 38
No. of states in DFA: 614 (65 KB)
Total size of DFA: 243 KB (2130 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.51u 0.09s 27.60t Elapsed: 00:00:15
Total cpu time: 27.52u 0.09s 27.61t Elapsed: 00:00:16
Start: Thu Aug 15 13:34:40 2013 End: Thu Aug 15 13:34:56 2013