RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18120
(392 letters)
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of
chromatin subfamily...; structural genomics, chromatin
remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Length = 93
Score = 102 bits (255), Expect = 4e-27
Identities = 63/82 (76%), Positives = 70/82 (85%)
Query: 298 DYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFS 357
QP QFKLDPRLARLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF
Sbjct: 6 SGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFE 65
Query: 358 CPRMKFAEIPQRLNPLLHPPDP 379
RMKF+EIPQRL+ LL PP+P
Sbjct: 66 SQRMKFSEIPQRLHALLMPPEP 87
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Arabidopsis
thaliana} SCOP: a.42.1.1
Length = 93
Score = 98.3 bits (245), Expect = 1e-25
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 301 PLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPR 360
P +FKL L +LG+ +TRP II+A+W Y+K KLQ+ ++ F NCD +++F +
Sbjct: 9 PEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEK 68
Query: 361 MKFAEIPQRLNPLLHPPDP 379
+KF + Q+++ L PP P
Sbjct: 69 LKFTMVSQKISHHLSPPPP 87
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex
subunit, structural genomics; NMR {Arabidopsis thaliana}
SCOP: a.42.1.1
Length = 101
Score = 61.4 bits (149), Expect = 3e-12
Identities = 10/60 (16%), Positives = 21/60 (35%)
Query: 320 TRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDP 379
+R + + +YI L D ++ + CDK +F + ++ L
Sbjct: 36 SRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQD 95
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 47.5 bits (112), Expect = 5e-06
Identities = 12/98 (12%), Positives = 23/98 (23%)
Query: 6 QGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTG 65
Q N PL+ P PP M+ + P Q+ +
Sbjct: 13 QLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQ 72
Query: 66 MRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
+ + ++ P ++ P
Sbjct: 73 IDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ 110
Score = 46.4 bits (109), Expect = 1e-05
Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 3/87 (3%)
Query: 18 YPPPSGPPMRYGNQNMA-MQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNI 76
YP + Q P P G G G+PP P G + P
Sbjct: 9 YPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT--PAQ 66
Query: 77 ANKRPSDARPPNNLKNDYQHGPPGPGP 103
+ ++ + + H P P
Sbjct: 67 EQLHQQIDQATTSMNDMHLHNVPLVDP 93
Score = 44.8 bits (105), Expect = 4e-05
Identities = 12/98 (12%), Positives = 21/98 (21%)
Query: 6 QGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTG 65
Q + + + M + + P P P G + QQP
Sbjct: 60 QFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAP 119
Query: 66 MRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
+ + P + L P
Sbjct: 120 AYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLP 157
Score = 44.4 bits (104), Expect = 6e-05
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 4/100 (4%)
Query: 5 FQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVP-PNQQPPY 63
+ + Q P ++ PP P + P G P+ + P +QQ
Sbjct: 16 YGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQ 75
Query: 64 TGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
+ N+ P+ P Q G P
Sbjct: 76 ATTSMNDMHLHNVPLVDPNAYMQPQ---VPVQMGTPLQQQ 112
Score = 43.7 bits (102), Expect = 1e-04
Identities = 11/104 (10%), Positives = 20/104 (19%), Gaps = 1/104 (0%)
Query: 1 MSQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQ 60
M + + + + PP P G Q + + +
Sbjct: 30 MPPQDPAAAGMSYGQMGMPPQGAVPS-MGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNV 88
Query: 61 PPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPI 104
P P P + P Q +
Sbjct: 89 PLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNM 132
Score = 42.5 bits (99), Expect = 2e-04
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 2/101 (1%)
Query: 1 MSQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQ 60
M Q+ + Q + + N+ + + + G P QQ
Sbjct: 56 MGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTP--LQQQQ 113
Query: 61 PPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGP 101
P P N RP + P +L +
Sbjct: 114 QPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDL 154
Score = 42.5 bits (99), Expect = 2e-04
Identities = 11/99 (11%), Positives = 16/99 (16%), Gaps = 1/99 (1%)
Query: 1 MSQRFQGSQNTNQAP-LRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQ 59
MS G P + P +Q + P
Sbjct: 40 MSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQP 99
Query: 60 QPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGP 98
Q P P +A +
Sbjct: 100 QVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQL 138
Score = 41.7 bits (97), Expect = 4e-04
Identities = 9/98 (9%), Positives = 16/98 (16%)
Query: 6 QGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTG 65
+ Q P + +M P P Q
Sbjct: 51 GAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ 110
Query: 66 MRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
+ P + + + Y P
Sbjct: 111 QQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELP 148
Score = 36.0 bits (82), Expect = 0.025
Identities = 16/95 (16%), Positives = 21/95 (22%)
Query: 3 QRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPP 62
P Y P P QP P G P NQ P
Sbjct: 81 NDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYP 140
Query: 63 YTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHG 97
+ P ++ P PP + +
Sbjct: 141 IDLLTELPPPITDLTLPPPPLVIPPERMLVPSELS 175
Score = 29.0 bits (64), Expect = 3.4
Identities = 19/84 (22%), Positives = 24/84 (28%)
Query: 6 QGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTG 65
Q A Y PS + + P T PP PP PP
Sbjct: 109 LQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERM 168
Query: 66 MRPSGPVNPNIANKRPSDARPPNN 89
+ PS N + R + P N
Sbjct: 169 LVPSELSNASPDYIRSTLNAVPKN 192
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 42.4 bits (99), Expect = 2e-04
Identities = 17/95 (17%), Positives = 23/95 (24%), Gaps = 2/95 (2%)
Query: 11 TNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTG--MRP 68
+ + P S P P PP P G PP+ +
Sbjct: 16 PRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRIL 75
Query: 69 SGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
GP P + P+ PP G
Sbjct: 76 RGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGR 110
Score = 40.5 bits (94), Expect = 6e-04
Identities = 16/91 (17%), Positives = 22/91 (24%), Gaps = 10/91 (10%)
Query: 13 QAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPV 72
+ + SG + P + T PP P P P
Sbjct: 3 SSHHHHHHSSGLV-----PRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPA 57
Query: 73 NPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
N + D+ GP GPG
Sbjct: 58 AGNPPDTVTGDSVLQ-----RILRGPTGPGT 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 5e-04
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 46/124 (37%)
Query: 81 PSDARPPNNLKNDYQHGPPGPGP---IK--KKKKLADKI------LP--QKV-------- 119
P+ + PP+ L++ ++ P P I ++++ D + LP ++V
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 120 RDLV----PESQAYMDLLAFERKLDSTIMRKR-----LDIQEALKRPMKQKRKLRIFISN 170
++LV P+S L L RK LD Q + P + RKL+ SN
Sbjct: 375 KNLVVSGPPQS-----LYGLNLTL-----RKAKAPSGLD-QS--RIPFSE-RKLK--FSN 418
Query: 171 TFYP 174
F P
Sbjct: 419 RFLP 422
Score = 38.5 bits (89), Expect = 0.004
Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 82/212 (38%)
Query: 176 KESGEGEEGSVASWELRVEG---RLLEDSKNDPNKSGEGEE----------------GSV 216
++S E EG V S L + ++D N N + G
Sbjct: 325 EDSLENNEG-VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 217 ASWELRVEGRLLEDSK----NDPNKV---KRK--FSSFFKSLVI--------------EL 253
S L L +K D +++ +RK FS+ F L + +
Sbjct: 384 QS--LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--LPVASPFHSHLLVPASDLI 439
Query: 254 DKDLYGPDNHLVEWH----RTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPR 309
+KDL + V ++ + P DG D + L + R
Sbjct: 440 NKDLVKNN---VSFNAKDIQIPVYDTFDG------------------SDLRVLSGSISER 478
Query: 310 LARLLGVHTQTRPVIISALWQYIKTHKLQDAH 341
+ + PV W+ T + + H
Sbjct: 479 IVDCI----IRLPV----KWE--TTTQFKATH 500
Score = 29.2 bits (65), Expect = 2.9
Identities = 43/259 (16%), Positives = 69/259 (26%), Gaps = 105/259 (40%)
Query: 164 LR-IFISNTFYPAKESGEGEE-GSVASWELRVEGRLLE--DSKNDPNKSGEGEE---GSV 216
L+ F P + +E + A EL G+ L S +P+K G+ ++ +
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPA--ELV--GKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 217 ASWE---LR------VEGRLLEDSKNDPNKVKRKFSSFFKSLVI---------------- 251
+E L + +LL+++ K K ++ + ++
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 252 -----------------------ELDK--DLYGP---------DNHLVEWHRTPTTQE-- 275
EL Y L E RT E
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 276 -TDGFQVK--------RPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIIS 326
T G + P L P+ P L+GV Q
Sbjct: 209 FTQGLNILEWLENPSNTPDKDY--------LLSIPISC---P----LIGV-IQ------- 245
Query: 327 ALWQYIKTHKLQDAHEREF 345
L Y+ T KL E
Sbjct: 246 -LAHYVVTAKLLGFTPGEL 263
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 51/458 (11%), Positives = 107/458 (23%), Gaps = 144/458 (31%)
Query: 3 QRF-QGSQNTN----QAPLRYPP--PSGPPMRYGNQNMAMQ--PRPGFTPTPPGPRPGGP 53
Q+F + N +P++ PS Y Q + + F R
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNV-SRL--- 134
Query: 54 GVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKKLADK 113
PY +R + + RP N+ G G G K +A
Sbjct: 135 -------QPYLKLR-----------QALLELRPAKNV---LIDGVLGSG----KTWVALD 169
Query: 114 ILPQKVRDLVPESQAY----------MDLLAFERKLDSTIMRK---RLDIQEALKRPMKQ 160
+ + + + +L +KL I R D +K +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 161 -KRKLRIFISNTFYPA----------KESGEG-----------EEGSVASWELRVEGRLL 198
+ +LR + + Y ++ V +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD---FLSAATT 286
Query: 199 EDSKNDPNKSGEGEEGS---VASW------ELRVE------------GRLLEDSKN---- 233
D + + + + +L E + D
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 234 ----DPNKVKRKFSSFFKSLVIELDKDLYG-----PDNHLVE-------WHRTPTT---Q 274
+ +K+ S L + ++ P + + W +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 275 ETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQ--------------- 319
+ +K + + + + + +L +L +H
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPS---IYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 320 -TRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIF 356
P + + +I H H F +F
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERM----TLFRMVF 497
Score = 37.9 bits (87), Expect = 0.006
Identities = 36/230 (15%), Positives = 67/230 (29%), Gaps = 93/230 (40%)
Query: 227 LLEDSKNDP---NKVKRKFSSFFK------SLVIELDKDLYGPDNHLVEWHRTPTTQETD 277
+ S N + ++ + K L++ L ++ + + +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LL-NV---------QNA----KAWN 260
Query: 278 GFQVKRPGDKNVRCTILL----------LLDYQPLQFKLDPR------------LARLLG 315
F N+ C ILL L LD L + L
Sbjct: 261 AF--------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 316 VHTQTRPV-----------IISAL----------WQYIKTHKLQDAHEREFINC------ 348
Q P II+ W+++ KL E +N
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLEPAEY 371
Query: 349 DKFFEQ--IFSCPRMKFAEIP-QRLNPL---LHPPDPIVI-NHIIRYLII 391
K F++ +F A IP L+ + + D +V+ N + +Y ++
Sbjct: 372 RKMFDRLSVF----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 38.5 bits (89), Expect = 0.002
Identities = 16/90 (17%), Positives = 19/90 (21%), Gaps = 5/90 (5%)
Query: 14 APLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVN 73
+ P + T PPG P + PP P G
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
Query: 74 PNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
P P PPG P
Sbjct: 198 PM-----GPPMGIPPGRGTPMGMPPPGMRP 222
Score = 36.5 bits (84), Expect = 0.008
Identities = 18/86 (20%), Positives = 22/86 (25%)
Query: 2 SQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQP 61
SQ+ Q + Q + P P PG G PP +P
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
Query: 62 PYTGMRPSGPVNPNIANKRPSDARPP 87
P P P RPP
Sbjct: 198 PMGPPMGIPPGRGTPMGMPPPGMRPP 223
Score = 36.5 bits (84), Expect = 0.009
Identities = 16/85 (18%), Positives = 19/85 (22%)
Query: 19 PPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIAN 78
P G +A P PG P G P G + P
Sbjct: 136 GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGM 195
Query: 79 KRPSDARPPNNLKNDYQHGPPGPGP 103
+ P G P PG
Sbjct: 196 RPPMGPPMGIPPGRGTPMGMPPPGM 220
Score = 35.4 bits (81), Expect = 0.018
Identities = 15/95 (15%), Positives = 18/95 (18%), Gaps = 3/95 (3%)
Query: 11 TNQAPLRYPPPSGPPMRYGN---QNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMR 67
+ P P+R Q + G P Q PP G
Sbjct: 116 AGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGP 175
Query: 68 PSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPG 102
P PPG G
Sbjct: 176 PPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRG 210
Score = 34.2 bits (78), Expect = 0.042
Identities = 12/78 (15%), Positives = 14/78 (17%), Gaps = 2/78 (2%)
Query: 1 MSQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQ 60
Q A + G G P P G P
Sbjct: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
Query: 61 P--PYTGMRPSGPVNPNI 76
P P G P +
Sbjct: 203 MGIPPGRGTPMGMPPPGM 220
Score = 34.2 bits (78), Expect = 0.044
Identities = 17/84 (20%), Positives = 20/84 (23%)
Query: 20 PPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANK 79
P+G PM +A R P+ P G G T P
Sbjct: 114 IPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRG 173
Query: 80 RPSDARPPNNLKNDYQHGPPGPGP 103
P PPG P
Sbjct: 174 GPPPPMGRGAPPPGMMGPPPGMRP 197
Score = 32.7 bits (74), Expect = 0.16
Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 19 PPPSGPPMRYGNQNMAMQPRPGFTP-TPPGPRPGGPGVPPNQQPPYTGMR 67
PP M+P G PPG PP +PP GMR
Sbjct: 179 MGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMR 228
Score = 31.5 bits (71), Expect = 0.36
Identities = 15/105 (14%), Positives = 19/105 (18%), Gaps = 4/105 (3%)
Query: 3 QRFQGSQNTNQAPLRYPPPSGPPMRYGN--QNMAMQPRPGFTPTPPGPRPGGPGV--PPN 58
+ G A P G G Q G G V P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 59 QQPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
+ + + P P P GP
Sbjct: 147 RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP 191
Score = 28.8 bits (64), Expect = 2.7
Identities = 16/107 (14%), Positives = 24/107 (22%), Gaps = 4/107 (3%)
Query: 1 MSQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGV----P 56
M+ ++T A + +G P + P G GV
Sbjct: 80 MTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQ 139
Query: 57 PNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
P G + + PP G P P
Sbjct: 140 QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPP 186
Score = 28.1 bits (62), Expect = 4.5
Identities = 11/57 (19%), Positives = 13/57 (22%)
Query: 4 RFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQ 60
R + PP M PG P PG PP +
Sbjct: 172 RGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMR 228
Score = 26.9 bits (59), Expect = 9.5
Identities = 14/79 (17%), Positives = 18/79 (22%), Gaps = 4/79 (5%)
Query: 30 NQNMAMQPRPGFTPTPPGPRPGGPGVP----PNQQPPYTGMRPSGPVNPNIANKRPSDAR 85
+ +A P G P R G G+P Q P G P+ P
Sbjct: 89 DTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
Query: 86 PPNNLKNDYQHGPPGPGPI 104
G
Sbjct: 149 TVAAAAAAATASIAGAPTQ 167
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 35.8 bits (82), Expect = 0.015
Identities = 11/76 (14%), Positives = 17/76 (22%), Gaps = 3/76 (3%)
Query: 3 QRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQ--- 59
+F+ + G+ A PG PGG P
Sbjct: 153 SQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPG 212
Query: 60 QPPYTGMRPSGPVNPN 75
PP + +
Sbjct: 213 GPPPPFPAGQTHHHHH 228
Score = 33.9 bits (77), Expect = 0.058
Identities = 12/63 (19%), Positives = 15/63 (23%), Gaps = 2/63 (3%)
Query: 2 SQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVP-PNQQ 60
+ P + P G G P PGGP P P Q
Sbjct: 164 QSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRF-PGPAGPGGPPPPFPAGQ 222
Query: 61 PPY 63
+
Sbjct: 223 THH 225
Score = 30.8 bits (69), Expect = 0.63
Identities = 9/85 (10%), Positives = 16/85 (18%)
Query: 12 NQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGP 71
++ R Q+ M P R P + +
Sbjct: 145 TPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDR 204
Query: 72 VNPNIANKRPSDARPPNNLKNDYQH 96
P P + + H
Sbjct: 205 FPGPAGPGGPPPPFPAGQTHHHHHH 229
Score = 30.5 bits (68), Expect = 0.88
Identities = 14/73 (19%), Positives = 16/73 (21%), Gaps = 3/73 (4%)
Query: 31 QNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNL 90
Q ++ T G G P G P R P
Sbjct: 150 QFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPA 209
Query: 91 KNDYQHGPPGPGP 103
GPP P P
Sbjct: 210 ---GPGGPPPPFP 219
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL
capsid, single-stranded DNA, icosahedral virus; HET:
DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB:
1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A
1c8e_A 1c8f_A 1c8g_A
Length = 584
Score = 36.0 bits (82), Expect = 0.018
Identities = 12/103 (11%), Positives = 19/103 (18%), Gaps = 3/103 (2%)
Query: 8 SQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMR 67
+ GN N + P G + Q P+
Sbjct: 299 GATNFGDIGVQQDKRRGVTQMGNTNYITEATI-MRPAEVGYSAPYYSFEASTQGPFKT-- 355
Query: 68 PSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKKL 110
P A QHG + ++
Sbjct: 356 PIAAGRGGAQTDENQAADGNPRYAFGRQHGQKTTTTGETPERF 398
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 35.2 bits (80), Expect = 0.021
Identities = 16/94 (17%), Positives = 20/94 (21%), Gaps = 3/94 (3%)
Query: 9 QNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRP 68
+ PP G QP G P G G P QP G
Sbjct: 16 GSRYPGQGSPGGNRYPPQGGGGWG---QPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 72
Query: 69 SGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPG 102
P+ K + +H
Sbjct: 73 PHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAA 106
Score = 34.4 bits (78), Expect = 0.038
Identities = 13/91 (14%), Positives = 17/91 (18%)
Query: 18 YPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIA 77
P P G G++ G P G G P+ G
Sbjct: 5 RPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 64
Query: 78 NKRPSDARPPNNLKNDYQHGPPGPGPIKKKK 108
+P K K
Sbjct: 65 PHGGGWGQPHGGGGWGQGGTHGQWNKPSKPK 95
Score = 32.5 bits (73), Expect = 0.16
Identities = 11/85 (12%), Positives = 16/85 (18%)
Query: 19 PPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIAN 78
P N G P G G P QP G +
Sbjct: 15 GGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPH 74
Query: 79 KRPSDARPPNNLKNDYQHGPPGPGP 103
+ + + + P
Sbjct: 75 GGGGWGQGGTHGQWNKPSKPKTNMK 99
Score = 30.6 bits (68), Expect = 0.72
Identities = 12/95 (12%), Positives = 16/95 (16%)
Query: 8 SQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMR 67
Q + P G + G+ G G Q G
Sbjct: 21 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWG 80
Query: 68 PSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPG 102
G +P G G
Sbjct: 81 QGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLG 115
Score = 29.4 bits (65), Expect = 1.6
Identities = 15/90 (16%), Positives = 19/90 (21%), Gaps = 13/90 (14%)
Query: 14 APLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVN 73
+ R P G G + P PGG PP + G
Sbjct: 2 SKKRPKPGGGWN-------------TGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQ 48
Query: 74 PNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
P+ P G G
Sbjct: 49 PHGGGWGQPHGGGWGQPHGGGWGQPHGGGG 78
Score = 27.9 bits (61), Expect = 5.0
Identities = 17/87 (19%), Positives = 21/87 (24%), Gaps = 1/87 (1%)
Query: 17 RYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNI 76
RYPP G + QP G P G G P+ G
Sbjct: 29 RYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG-GWGQPHGGGWGQPHGGGGWGQGGTHGQ 87
Query: 77 ANKRPSDARPPNNLKNDYQHGPPGPGP 103
NK ++ G G
Sbjct: 88 WNKPSKPKTNMKHVAGAAAAGAVVGGL 114
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 35.3 bits (81), Expect = 0.029
Identities = 24/72 (33%), Positives = 26/72 (36%), Gaps = 12/72 (16%)
Query: 1 MSQRFQGSQNTNQAPLRYPPPSG-PPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQ 59
M Q+ Q Q PPP G PP Y Q Q P P G P PP
Sbjct: 377 MMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYP-----PQGYPP-----PPQG 426
Query: 60 QPPYTGMRPSGP 71
PP G P+ P
Sbjct: 427 APPQ-GAPPAAP 437
Score = 35.3 bits (81), Expect = 0.034
Identities = 19/83 (22%), Positives = 20/83 (24%), Gaps = 13/83 (15%)
Query: 21 PSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKR 80
PS + MQ P PP Q P G P G
Sbjct: 364 PSADAAQMKEMMAMMQK----MQQQQAAYPPQGYAPPPQGYPPQGYPPQG---------Y 410
Query: 81 PSDARPPNNLKNDYQHGPPGPGP 103
P PP Q PP P
Sbjct: 411 PPQGYPPQGYPPPPQGAPPQGAP 433
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 35.0 bits (80), Expect = 0.030
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 2/114 (1%)
Query: 16 LRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPN 75
+ + P R + P P P R GP +
Sbjct: 1 MDFIPTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQK 60
Query: 76 IANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKK--LADKILPQKVRDLVPESQ 127
A K+P PP K P K K+ KI + ++ + +
Sbjct: 61 RAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDGK 114
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 33.3 bits (75), Expect = 0.13
Identities = 18/100 (18%), Positives = 26/100 (26%), Gaps = 6/100 (6%)
Query: 6 QGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPG--VPPNQQPPY 63
GS + P P +P T P P PG G P +P
Sbjct: 283 PGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGS 342
Query: 64 TGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
G G P ++ + ++ G G
Sbjct: 343 AGTWNPGRPEPG----SAGTWNTGSSGSSSFRPDSSGHGN 378
Score = 31.8 bits (71), Expect = 0.35
Identities = 18/105 (17%), Positives = 28/105 (26%), Gaps = 4/105 (3%)
Query: 1 MSQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPG-FTPTPPGPRPGGPGVPPNQ 59
++ + + G + G+ G P GP G P
Sbjct: 240 QTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRP 299
Query: 60 QPPYTGMRPSGPVNP-NIANKRPSDARPPNNLKNDYQHGPPGPGP 103
+P G G P + P P + + G P PG
Sbjct: 300 EPGSAGTWNPGRPEPGSAGTWNPGRPEPGSA--GTWNPGRPEPGS 342
Score = 30.6 bits (68), Expect = 0.87
Identities = 15/101 (14%), Positives = 22/101 (21%), Gaps = 4/101 (3%)
Query: 3 QRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPP 62
+ Q T + +Q + P P PG
Sbjct: 233 KALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSG 292
Query: 63 YTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
P P + P P + + G P PG
Sbjct: 293 TWN--PGRPEPGSAGTWNPGRPEPGSA--GTWNPGRPEPGS 329
Score = 29.1 bits (64), Expect = 2.4
Identities = 16/85 (18%), Positives = 18/85 (21%), Gaps = 9/85 (10%)
Query: 19 PPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIAN 78
P + Q + G G P G G VNP
Sbjct: 228 APLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYG 287
Query: 79 KRPSDARPPNNLKNDYQHGPPGPGP 103
S P G P PG
Sbjct: 288 PGSSGTWNP---------GRPEPGS 303
Score = 28.7 bits (63), Expect = 3.4
Identities = 14/86 (16%), Positives = 21/86 (24%), Gaps = 4/86 (4%)
Query: 19 PPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPG--GPGVPPNQQPPYTGMRPSGPVNPNI 76
P P + PG PG P +G N
Sbjct: 304 AGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGS 363
Query: 77 ANKRPSDARPPNNLKNDYQHGPPGPG 102
+ S RP ++ + + P G
Sbjct: 364 SG--SSSFRPDSSGHGNIRPSSPDWG 387
Score = 28.3 bits (62), Expect = 4.5
Identities = 18/98 (18%), Positives = 24/98 (24%), Gaps = 1/98 (1%)
Query: 7 GSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGM 66
T+ P GP +P T P P PG G +P
Sbjct: 271 RKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSA 330
Query: 67 RPSGPVNPNIANKRPSDA-RPPNNLKNDYQHGPPGPGP 103
P P + + RP + G G
Sbjct: 331 GTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSS 368
Score = 27.5 bits (60), Expect = 9.4
Identities = 8/75 (10%), Positives = 13/75 (17%), Gaps = 2/75 (2%)
Query: 31 QNMAMQPRPGFTPTP--PGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPN 88
+ M G P + + T M A
Sbjct: 206 PILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGL 265
Query: 89 NLKNDYQHGPPGPGP 103
+ + G G
Sbjct: 266 APGSPRKPGTSSIGN 280
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A*
2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 33.0 bits (76), Expect = 0.16
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 6/68 (8%)
Query: 7 GSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGM 66
GS + + P G MR Q +P G + P Y +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMRRTQQGTTA------SPPVLDLGALGQDFAADPYPTYARL 55
Query: 67 RPSGPVNP 74
R GP +
Sbjct: 56 RAEGPAHR 63
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 33.1 bits (75), Expect = 0.17
Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 16/111 (14%)
Query: 8 SQNTNQAPLRYPPPSGPPMRYGNQNMAMQPR-PGFTPTPPGPRPGGPGVPPNQQ------ 60
S + P S Y + + P P ++PT P P P P
Sbjct: 1585 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1644
Query: 61 PPYTGMRP-----SGPVNPNIANKRPSDAR----PPNNLKNDYQHGPPGPG 102
P Y+ P S +P + P+ P+ + P P
Sbjct: 1645 PSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPN 1695
Score = 30.8 bits (69), Expect = 1.1
Identities = 19/97 (19%), Positives = 26/97 (26%), Gaps = 11/97 (11%)
Query: 18 YPPPSGPPMRYGNQNMAMQPR-PGFTPTPPGPRPGGPGVPPN------QQPPYTGMRPS- 69
Y P PGF + PG P P P P Y+ PS
Sbjct: 1511 YGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSY 1570
Query: 70 GPVNPN---IANKRPSDARPPNNLKNDYQHGPPGPGP 103
P +P+ + + + Y P P
Sbjct: 1571 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1607
Score = 29.3 bits (65), Expect = 3.2
Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 8 SQNTNQAPLRYPPPSGPPMRYGNQNMAMQPR-----PGFTPTPPGPRPGGPGVPPNQQPP 62
S + + Y P S P P ++PT PG PG P P Q
Sbjct: 1665 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQ 1724
Query: 63 YTGMRPS 69
+
Sbjct: 1725 KHNENEN 1731
Score = 28.1 bits (62), Expect = 7.3
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 19 PPPSGPPMRYGNQNMAMQP-RPGFTPTPPGPRPGGPGVPPNQQ------PPYTGMRPS-G 70
P S Y + + P P ++PT P P P P P Y+ PS
Sbjct: 1547 PTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1606
Query: 71 PVNPNIANKRPS 82
P +P+ + PS
Sbjct: 1607 PTSPSYSPTSPS 1618
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 32.6 bits (74), Expect = 0.21
Identities = 12/48 (25%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 20 PPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQP-PYTGM 66
+ P + Q M P P P G P QP P G
Sbjct: 576 TETQPIVYGQPQLMLTAG-PSVAVPPQAPFGYGYTAPAYGQPQPGFGY 622
Score = 29.2 bits (65), Expect = 2.5
Identities = 8/42 (19%), Positives = 10/42 (23%)
Query: 29 GNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSG 70
+ QP+ T P P P G G
Sbjct: 578 TQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPG 619
Score = 29.2 bits (65), Expect = 2.7
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 12 NQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTP 43
P PP P QP+PGF
Sbjct: 591 TAGPSVAVPPQAPFGYGYTAPAYGQPQPGFGY 622
Score = 28.8 bits (64), Expect = 4.0
Identities = 13/58 (22%), Positives = 19/58 (32%)
Query: 1 MSQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPN 58
S R + Q T P+ Y P + + Q G+ T P PG +
Sbjct: 566 ESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPGFGYS 623
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 32.2 bits (72), Expect = 0.29
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 3/89 (3%)
Query: 1 MSQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQ 60
+S + ++ +A + P S P++ N + P P +
Sbjct: 233 LSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQS-VGSVPFSAPTERTRRSETE 291
Query: 61 PPYTGMRPSGPVNPNIANKRPSDARPPNN 89
P+ + + P ++
Sbjct: 292 SVNPVSTPASVEYHA--GMKSLNKAPYSS 318
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding
protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A
1jh4_A
Length = 144
Score = 30.2 bits (67), Expect = 0.51
Identities = 8/56 (14%), Positives = 12/56 (21%)
Query: 23 GPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIAN 78
GP A++ P + P Q P A+
Sbjct: 1 GPLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTAS 56
Score = 29.4 bits (65), Expect = 1.2
Identities = 8/67 (11%), Positives = 16/67 (23%), Gaps = 2/67 (2%)
Query: 19 PPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIAN 78
P S + + P P V Q ++ P+ ++
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAV--HVQGQEPLTASMLA 59
Query: 79 KRPSDAR 85
P +
Sbjct: 60 SAPPQEQ 66
Score = 28.3 bits (62), Expect = 2.4
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 7/85 (8%)
Query: 47 GPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPG---- 102
GP P + +G NP Q P
Sbjct: 1 GPLGSAAAATPAVRTVPQYKYAAGVRNPQQHL-NAQPQVTMQQPAVHVQGQEPLTASMLA 59
Query: 103 --PIKKKKKLADKILPQKVRDLVPE 125
P +++K++ + L ++ + P
Sbjct: 60 SAPPQEQKQMLGERLFPLIQAMHPT 84
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication,
ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus;
2.60A {Saccharomyces cerevisiae}
Length = 371
Score = 30.7 bits (68), Expect = 0.92
Identities = 7/62 (11%), Positives = 13/62 (20%)
Query: 8 SQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMR 67
++ P + Q + PP P + P +
Sbjct: 10 VRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAVPTIHFK 69
Query: 68 PS 69
S
Sbjct: 70 ES 71
>3zue_A VP1, capsid structural protein VP60; CAGE design, molecular
switch, protein engineering, structural polymorphism;
10.30A {Rabbit hemorrhagic disease virus}
Length = 579
Score = 30.7 bits (68), Expect = 1.1
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 1/55 (1%)
Query: 36 QPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNL 90
G T P G+ P T + + + +IA +
Sbjct: 11 GEAAGTATTASVPGTTTDGLDPGVVAT-TSVVTAENSSASIATAGIGGPPQQVDQ 64
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation,
nuclear protein, complex (oncogene protein/peptide),
phosphorylation, activator; 2.30A {Xenopus laevis} SCOP:
a.42.1.1
Length = 107
Score = 28.4 bits (62), Expect = 1.6
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 300 QPLQFKLDPRLARLL-----GVHTQTRPVIISALWQYIKTHKLQDAHEREFINC 348
Q + P L LL T T +I L QYI +L D ++ ++C
Sbjct: 8 QEKLVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHC 61
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
PDB: 1pd0_A 1pd1_A
Length = 810
Score = 29.6 bits (65), Expect = 2.0
Identities = 18/76 (23%), Positives = 23/76 (30%)
Query: 14 APLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVN 73
A Y PS + + P T PP PP PP + PS N
Sbjct: 1 AAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSN 60
Query: 74 PNIANKRPSDARPPNN 89
+ R + P N
Sbjct: 61 ASPDYIRSTLNAVPKN 76
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 29.7 bits (66), Expect = 2.1
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 18 YPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPS-GPVNPNI 76
P G + PG+ T P P PG + P Y PS P +P+
Sbjct: 1528 ASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTS--PAYMPSSPSYSPTSPSY 1585
Query: 77 ANKRPS 82
+ PS
Sbjct: 1586 SPTSPS 1591
Score = 29.3 bits (65), Expect = 2.6
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 19 PPPSGPPMRYGNQNMAMQP-RPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPS-GPVNPN 75
P S Y + + P P ++PT P P P P P Y+ PS P +P+
Sbjct: 1695 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPS 1752
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 29.2 bits (65), Expect = 2.3
Identities = 17/122 (13%), Positives = 30/122 (24%), Gaps = 7/122 (5%)
Query: 6 QGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTG 65
+ T+ + PP + + P P P T
Sbjct: 48 RSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTS 107
Query: 66 MRPSGP-VNPNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKK------KLADKILPQK 118
S P + + P + + + Q +K K+AD+ L
Sbjct: 108 SPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSI 167
Query: 119 VR 120
V
Sbjct: 168 VE 169
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY,
metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8
PDB: 2jc2_A
Length = 198
Score = 28.6 bits (64), Expect = 2.6
Identities = 10/25 (40%), Positives = 10/25 (40%)
Query: 50 PGGPGVPPNQQPPYTGMRPSGPVNP 74
PG PG P G P GP P
Sbjct: 4 PGHPGAGGGYYPGGYGGAPGGPAFP 28
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich,
beta-sheet, homodimerdna- binding, transcription
regulation, activator; 1.49A {Mus musculus} SCOP:
b.1.18.1 PDB: 1my5_A 1bft_A
Length = 114
Score = 27.5 bits (61), Expect = 2.9
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 61 PPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKK 109
PPY PV ++ +RPSD ++ Y I++K+K
Sbjct: 65 PPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRK 113
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 28.7 bits (63), Expect = 3.4
Identities = 13/102 (12%), Positives = 19/102 (18%), Gaps = 11/102 (10%)
Query: 9 QNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRP 68
Q P P + P PG V P
Sbjct: 26 LQRPQPPPPPPSAASPG-----------ATPGSAAASAERASTAAPVASPAAPSPGSSGG 74
Query: 69 SGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKKL 110
G + + + A G G G ++
Sbjct: 75 GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARV 116
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 3.5
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 4/40 (10%)
Query: 60 QPPYTGMRPSGPVNPNIANKR--PSDARPPNNLKNDYQHG 97
+ + +G PN+ P P + + G
Sbjct: 4 RESID--KRAGRRGPNLNIVLTCPECKVYPPKIVERFSEG 41
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 28.8 bits (63), Expect = 3.6
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 13 QAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTG 65
QA + P N + P + PP + P Q TG
Sbjct: 2 QAKAQLSNGYNNPN--VNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTG 52
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 28.2 bits (62), Expect = 4.3
Identities = 14/82 (17%), Positives = 18/82 (21%)
Query: 28 YGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPP 87
G + P Q S V + RPP
Sbjct: 9 LGRRPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPP 68
Query: 88 NNLKNDYQHGPPGPGPIKKKKK 109
K PP P K ++K
Sbjct: 69 PRQKKQAPKQPPKPKKPKPQEK 90
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 28.5 bits (63), Expect = 4.4
Identities = 18/104 (17%), Positives = 26/104 (25%), Gaps = 12/104 (11%)
Query: 18 YPPPSGPPMRYGNQNMAMQPRPGFTPT-------PPGPRPGGPGVPPNQQPPYT-----G 65
P P + G + P T + PP P P + P T
Sbjct: 34 AAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFS 93
Query: 66 MRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKK 109
+P D +PP L + G + K
Sbjct: 94 TGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTK 137
>3axg_A Endotype 6-aminohexanoat-oligomer hydrolase; nylon oligomer;
2.00A {Agromyces}
Length = 355
Score = 28.3 bits (62), Expect = 5.1
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 30 NQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVN 73
+ +A+ P P P G P N +R +G
Sbjct: 13 DGGIAVDPAPRLAGPPV------FGGPGNDAFDLAPVRSTGREM 50
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 28.4 bits (62), Expect = 5.2
Identities = 13/100 (13%), Positives = 21/100 (21%), Gaps = 1/100 (1%)
Query: 21 PSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKR 80
P+ PP + + + P P P P +
Sbjct: 18 PAPPPGQPSGRRRGRRSGGSGGGFWGDRVDSQPFAIPYIHPT-NPFAPDVTAAAGAGPRV 76
Query: 81 PSDARPPNNLKNDYQHGPPGPGPIKKKKKLADKILPQKVR 120
ARP + D P + A +
Sbjct: 77 RQPARPLGSAWRDQAQRPAVASRRRPTTAGAAPLTAVAPA 116
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 28.0 bits (63), Expect = 5.2
Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 66 MRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPE 125
M P V A A P + + P G + + IL V D+ E
Sbjct: 1 MSPIVSVPDITAPVENVPAILPKVVPGELIVNKPTGGDSDELFQYLVDILASPVYDVAIE 60
Query: 126 SQ-AYMDLLAFERKLDSTIMRKRLDIQ 151
S + L+ +L KR D Q
Sbjct: 61 SPLELAEKLS--DRLGVNFYIKREDKQ 85
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 28.2 bits (63), Expect = 5.3
Identities = 31/139 (22%), Positives = 41/139 (29%), Gaps = 44/139 (31%)
Query: 33 MAMQPRPGFTPTPPGPR----PGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPN 88
M P G P GP P QP + R S P N+
Sbjct: 1 MTTSESPDAYTESFGAHTIVKPAGP--PRVGQPSWNPQRASS--MP--VNR--------- 45
Query: 89 NLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRL 148
Y+ PI+ L ++ P +V D P +R
Sbjct: 46 -----YRPFAEEVEPIR----LRNRTWPDRVIDRAP------------LWCAVD-LR--- 80
Query: 149 DIQEALKRPMKQKRKLRIF 167
D +AL PM RK R+F
Sbjct: 81 DGNQALIDPMSPARKRRMF 99
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein,
echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis
SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Length = 323
Score = 27.7 bits (61), Expect = 6.0
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 40 GFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNI 76
GFT G R P VPP T + G N +
Sbjct: 162 GFTAGKDGKRIAEPVVPPQDTASRTKVSIEGVTNATV 198
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor,
IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Length = 119
Score = 26.4 bits (58), Expect = 8.2
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 61 PPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKK 109
P Y + + P + + +R SD Y +++K++
Sbjct: 70 PKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYPEIKDKEEVQRKRQ 118
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 27.6 bits (61), Expect = 8.8
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 309 RLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINC 348
R+++ +G +R AL+ Y + K A + I
Sbjct: 173 RVSQAVGERVYSRFFQNVALYGYFENGKRLPAPRQGNILS 212
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 27.6 bits (60), Expect = 9.0
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 68 PSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPI 104
PS ++ ++ P +P ++G P P P+
Sbjct: 634 PSSAHRSHLKHRHPHHYKPSPE-----RYGKPIPNPL 665
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 9.4
Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 13 QAPLR-YPPPSGPPM 26
QA L+ Y S P +
Sbjct: 26 QASLKLYADDSAPAL 40
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA
binding protein; NMR {Homo sapiens}
Length = 107
Score = 26.0 bits (57), Expect = 9.6
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 31 QNMAMQPRPGFTPTPPGPRPGGPGVPPNQQP 61
+ P P P GP P GP P N P
Sbjct: 74 EEKIEGPLCPVGPGPGGPGPAGPMGPFNPGP 104
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 27.1 bits (59), Expect = 9.9
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 101 PGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQ 160
PG +KKK K L +KV VPE+ L +R+ + + KRL + ALK K
Sbjct: 15 PGTLKKKVPAGPKTLKKKVP-AVPET------LKKKRRNFAELKVKRLRKKFALKTLRKA 67
Query: 161 KRKLRIFISNTFYPAKESGEGEE 183
+RKL + ++ E
Sbjct: 68 RRKLIYEKAKHYHKEYRQMYRTE 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.138 0.421
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,220,291
Number of extensions: 382530
Number of successful extensions: 1412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1182
Number of HSP's successfully gapped: 150
Length of query: 392
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 297
Effective length of database: 4,049,298
Effective search space: 1202641506
Effective search space used: 1202641506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)