RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18120
(392 letters)
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin
(BRG1-associated factor 60a) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 93
Score = 97.1 bits (242), Expect = 1e-25
Identities = 63/80 (78%), Positives = 70/80 (87%)
Query: 300 QPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCP 359
QP QFKLDPRLARLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF
Sbjct: 8 QPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQ 67
Query: 360 RMKFAEIPQRLNPLLHPPDP 379
RMKF+EIPQRL+ LL PP+P
Sbjct: 68 RMKFSEIPQRLHALLMPPEP 87
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170
(rafl11-05-p19) {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 93
Score = 89.1 bits (221), Expect = 1e-22
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 301 PLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPR 360
P +FKL L +LG+ +TRP II+A+W Y+K KLQ+ ++ F NCD +++F +
Sbjct: 9 PEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEK 68
Query: 361 MKFAEIPQRLNPLLHPPDP 379
+KF + Q+++ L PP P
Sbjct: 69 LKFTMVSQKISHHLSPPPP 87
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430
(rafl09-47-k03) {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 101
Score = 64.1 bits (156), Expect = 2e-13
Identities = 10/60 (16%), Positives = 21/60 (35%)
Query: 320 TRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDP 379
+R + + +YI L D ++ + CDK +F + ++ L
Sbjct: 36 SRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQD 95
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 29.1 bits (65), Expect = 0.40
Identities = 8/46 (17%), Positives = 12/46 (26%), Gaps = 3/46 (6%)
Query: 20 PPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTG 65
+ P +Y ++ P P V Q P T
Sbjct: 13 VRTVPQYKY---AAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTA 55
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
[TaxId: 5053]}
Length = 422
Score = 29.3 bits (65), Expect = 0.79
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 21 PSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYT 64
+ P Y MA F T P P +P + P T
Sbjct: 375 VTAAPSGYSATTMAADLATAFGLTASIP---IPTIPTSFYPGLT 415
>d1j20a2 d.210.1.1 (A:171-395) Argininosuccinate synthetase,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 225
Score = 28.0 bits (62), Expect = 1.5
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 15/81 (18%)
Query: 189 WELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKS 248
+ EG +LED +P K + + D + P+ + FF+
Sbjct: 9 LHISYEGGVLEDPWAEPPKG---------MFRMTQ------DPEEAPDAPEYVEVEFFEG 53
Query: 249 LVIELDKDLYGPDNHLVEWHR 269
+ ++ + P L +
Sbjct: 54 DPVAVNGERLSPAALLQRLNE 74
>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp.
[TaxId: 1931]}
Length = 246
Score = 27.9 bits (61), Expect = 1.8
Identities = 10/52 (19%), Positives = 14/52 (26%)
Query: 46 PGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHG 97
P GG GV P + RP P + + D +
Sbjct: 3 PVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVVGLHDNTNADRDYDTVNP 54
>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 148
Score = 26.7 bits (59), Expect = 3.1
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 117 QKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAK 176
++ ++L P + E +M +R ++ L L I + N + K
Sbjct: 32 ERFKELTPNYNPDIIFKDEENTGADRLMTQRC--KDKLNA-------LAISVMNQWPGVK 82
Query: 177 ---ESGEGEEGSVASWELRVEGR--LLEDSKNDPNKSG 209
G E+G + L EGR + S D +K G
Sbjct: 83 LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 120
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 26.6 bits (58), Expect = 4.5
Identities = 15/137 (10%), Positives = 42/137 (30%), Gaps = 11/137 (8%)
Query: 240 RKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDY 299
R S F L ++ + L+ + P + ++ ++
Sbjct: 120 RHLSQEFGWL--QITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACK 177
Query: 300 QPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCP 359
+ R +L + +P+ Q+ ++ ++ + +I S
Sbjct: 178 RKNPTSCSRRFYQLTKLLDSVQPIARELH-QFTFDLLIKSHMVS--VDFPEMMAEIIS-- 232
Query: 360 RMKFAEIPQRLNPLLHP 376
++P+ L+ + P
Sbjct: 233 ----VQVPKILSGKVKP 245
>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex
(Ubiquinol-cytochrome c reductase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 25.8 bits (57), Expect = 4.9
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 109 KLADKIL--PQKVRDLVPESQAYMDLLAFERKL----DSTIMRKRLDIQEALKRPMKQKR 162
++ D IL P + VP + +++L + +KL D I + +Q AL+R + +
Sbjct: 8 RIGDYILKSPVLSKLCVPVANQFINLAGY-KKLGLKFDDLIAEENPIMQTALRRLPEDES 66
Query: 163 KLRIF 167
R +
Sbjct: 67 YARAY 71
>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 254
Score = 26.7 bits (57), Expect = 5.0
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 30 NQNMAMQPRPGFTPTPPGP 48
+ M +PRPG P P
Sbjct: 236 QKLMRSEPRPGVLLRAPFP 254
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
basidiomycete (Phanerochaete chrysosporium) [TaxId:
5306]}
Length = 343
Score = 26.5 bits (58), Expect = 6.0
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 21 PSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQ 59
P G Q A P P T PGP +PP++
Sbjct: 305 PPGKSHSDIEQACAETPFPSL-VTLPGPATSVARIPPHK 342
>d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC
{Flavobacterium sp. [TaxId: 239]}
Length = 388
Score = 26.6 bits (57), Expect = 6.4
Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 18/66 (27%)
Query: 11 TNQAPLRYPPPS-----------GPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQ 59
T Q P RYP + P R+ ++ P+ R P P
Sbjct: 2 TGQHPARYPGAAAGEPTLDSWQEPPHNRWAFAHLGE-----MVPSAAVSR--RPVNAPGH 54
Query: 60 QPPYTG 65
G
Sbjct: 55 ALARLG 60
>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 85
Score = 24.7 bits (54), Expect = 7.0
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 320 TRPVIISALWQYIKTHKLQDAHEREFINC-DKFFEQIFSCPRMKFAEIPQRLNPLLHP 376
T ++ L QYI T +L D ++ + C + +F P E +++ +++
Sbjct: 25 TMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE-HRKIYTMIYR 81
>d1sska_ b.148.1.1 (A:) Nucleocapsid protein {SARS coronavirus,
(SARS-CoV) [TaxId: 227859]}
Length = 158
Score = 25.6 bits (56), Expect = 8.2
Identities = 13/51 (25%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 48 PRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPN-NLKNDYQHG 97
PR G+P N +T + G P N N D Q G
Sbjct: 16 PRGSAMGLPNNTASWFTALTQHGKEELRFP---RGQGVPINTNSGPDDQIG 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.138 0.421
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,548,823
Number of extensions: 77780
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 25
Length of query: 392
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,213,086
Effective search space: 369991230
Effective search space used: 369991230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)