BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18121
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5VUJ6|LRCH2_HUMAN Leucine-rich repeat and calponin homology domain-containing protein
2 OS=Homo sapiens GN=LRCH2 PE=2 SV=2
Length = 765
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 16 HLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSV 57
H RSL+R LEEA SG L+LSGRKL+DFP SG YDL+D+
Sbjct: 75 HTVRSLDRALEEAGSSGILSLSGRKLRDFPGSG--YDLTDTT 114
>sp|Q96II8|LRCH3_HUMAN Leucine-rich repeat and calponin homology domain-containing
protein 3 OS=Homo sapiens GN=LRCH3 PE=1 SV=2
Length = 777
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 31/39 (79%)
Query: 18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDS 56
+RSL+R LEEA ++G L+LSGRKL++FP +DL+D+
Sbjct: 46 SRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDT 84
>sp|Q3UMG5|LRCH2_MOUSE Leucine-rich repeat and calponin homology domain-containing protein
2 OS=Mus musculus GN=Lrch2 PE=2 SV=2
Length = 773
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 16 HLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSV 57
H RSL+R LEEA SG L+LSGRKL++FP SG YDL+D+
Sbjct: 83 HTVRSLDRALEEAGNSGILSLSGRKLREFPGSG--YDLTDTT 122
>sp|Q9Y2L9|LRCH1_HUMAN Leucine-rich repeat and calponin homology domain-containing protein
1 OS=Homo sapiens GN=LRCH1 PE=1 SV=3
Length = 728
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 17 LARSLERILEEAHLSGELNLSGRKLKDFPNSGGK-YDLSDSV 57
L R LER LEEA SG LNLS RKLK+FP + +DLSD+V
Sbjct: 59 LNRGLERALEEAANSGGLNLSARKLKEFPRTAAPGHDLSDTV 100
>sp|Q8BVU0|LRCH3_MOUSE Leucine-rich repeat and calponin homology domain-containing
protein 3 OS=Mus musculus GN=Lrch3 PE=2 SV=3
Length = 778
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDS 56
+RS++R LEEA ++G L+LSGRKL++FP +DL+D+
Sbjct: 46 SRSVDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDT 84
>sp|P62046|LRCH1_MOUSE Leucine-rich repeat and calponin homology domain-containing
protein 1 OS=Mus musculus GN=Lrch1 PE=1 SV=2
Length = 709
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 17 LARSLERILEEAHLSGELNLSGRKLKDFPNSGGK-YDLSDSV 57
L R LER LEEA SG LNLS RKLK+FP + +DLSD+V
Sbjct: 49 LNRGLERALEEAANSGGLNLSARKLKEFPRTTAPGHDLSDTV 90
>sp|Q921G6|LRCH4_MOUSE Leucine-rich repeat and calponin homology domain-containing
protein 4 OS=Mus musculus GN=Lrch4 PE=2 SV=1
Length = 680
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGK-YDLSD 55
+RS ER LEEA +G LNLS R+LK FP + YDLSD
Sbjct: 31 SRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSD 69
>sp|O75427|LRCH4_HUMAN Leucine-rich repeat and calponin homology domain-containing
protein 4 OS=Homo sapiens GN=LRCH4 PE=1 SV=2
Length = 683
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 19 RSLERILEEAHLSGELNLSGRKLKDFPNSGGK-YDLSD 55
RS ER LEEA +G LNLS R+LK FP + YDLSD
Sbjct: 32 RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSD 69
>sp|P48996|DPY27_CAEEL Chromosome condensation protein dpy-27 OS=Caenorhabditis elegans
GN=dpy-27 PE=1 SV=1
Length = 1469
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 45 PNSGGKYDLSDSVIVVYFSRSG----RKLKDFPNSGGKYDLSDSVIVVY 89
PN GK ++ D+++ V+ ++G +KL NSGG Y+ S SV +++
Sbjct: 123 PNGSGKSNVIDALLFVFGFKAGKIRTKKLSALINSGGNYE-SCSVTIMF 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,642,117
Number of Sequences: 539616
Number of extensions: 1582314
Number of successful extensions: 3347
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3335
Number of HSP's gapped (non-prelim): 16
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)