Query psy18121
Match_columns 109
No_of_seqs 88 out of 90
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 23:02:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0532|consensus 99.7 1.1E-18 2.5E-23 154.4 0.6 93 7-102 28-121 (722)
2 PF13855 LRR_8: Leucine rich r 97.8 1.9E-05 4.1E-10 48.4 3.3 54 32-89 4-58 (61)
3 PF12799 LRR_4: Leucine Rich r 97.8 1.1E-05 2.3E-10 48.7 1.7 38 57-97 3-42 (44)
4 KOG0472|consensus 97.7 5.7E-06 1.2E-10 72.7 -0.4 75 23-102 3-114 (565)
5 KOG4579|consensus 97.6 1.2E-05 2.5E-10 62.6 -0.9 69 34-106 58-127 (177)
6 KOG0617|consensus 97.5 2.2E-05 4.7E-10 63.6 -0.2 75 26-106 8-83 (264)
7 KOG0444|consensus 97.3 3.4E-05 7.4E-10 71.5 -1.1 66 20-89 117-182 (1255)
8 PLN03150 hypothetical protein; 97.0 0.00048 1E-08 60.0 2.7 67 34-105 423-493 (623)
9 KOG0444|consensus 97.0 0.0002 4.3E-09 66.6 0.3 80 23-107 216-296 (1255)
10 KOG0472|consensus 96.9 0.00023 5E-09 62.9 -0.3 63 30-98 253-316 (565)
11 KOG0618|consensus 96.8 7.4E-05 1.6E-09 70.1 -3.7 79 18-101 372-451 (1081)
12 PLN03150 hypothetical protein; 96.5 0.0021 4.6E-08 56.0 3.2 65 32-101 445-513 (623)
13 PRK15370 E3 ubiquitin-protein 96.4 0.0041 8.9E-08 56.4 4.4 59 31-98 180-239 (754)
14 KOG0532|consensus 96.3 0.0006 1.3E-08 61.9 -1.6 64 32-101 146-211 (722)
15 KOG0617|consensus 96.2 0.00077 1.7E-08 54.7 -1.2 72 25-102 29-102 (264)
16 KOG4658|consensus 96.2 0.0016 3.4E-08 60.0 0.5 61 41-105 559-621 (889)
17 PF13855 LRR_8: Leucine rich r 96.1 0.0041 9E-08 37.9 2.2 42 59-103 6-50 (61)
18 KOG4658|consensus 96.1 0.0026 5.6E-08 58.6 1.7 77 25-107 567-647 (889)
19 PRK15370 E3 ubiquitin-protein 96.1 0.0042 9.2E-08 56.3 2.9 56 33-98 245-302 (754)
20 KOG4579|consensus 95.9 0.0011 2.3E-08 51.8 -1.4 79 18-102 17-100 (177)
21 PLN00113 leucine-rich repeat r 95.9 0.0073 1.6E-07 53.2 3.5 46 59-107 145-193 (968)
22 PF12799 LRR_4: Leucine Rich r 95.9 0.0049 1.1E-07 37.0 1.7 37 33-74 5-41 (44)
23 PLN00113 leucine-rich repeat r 95.6 0.0083 1.8E-07 52.9 2.5 68 33-105 144-215 (968)
24 PF00560 LRR_1: Leucine Rich R 95.6 0.0057 1.2E-07 31.9 0.9 19 57-78 2-21 (22)
25 PRK15386 type III secretion pr 95.6 0.017 3.7E-07 50.0 4.2 72 18-101 42-117 (426)
26 PRK15387 E3 ubiquitin-protein 95.5 0.026 5.7E-07 51.8 5.5 57 31-97 203-260 (788)
27 PLN03210 Resistant to P. syrin 95.4 0.012 2.7E-07 54.5 3.0 48 56-106 847-897 (1153)
28 PRK15387 E3 ubiquitin-protein 95.3 0.0078 1.7E-07 55.2 1.5 28 59-89 427-454 (788)
29 COG4886 Leucine-rich repeat (L 95.1 0.0084 1.8E-07 47.5 0.8 61 33-98 120-182 (394)
30 KOG0618|consensus 95.0 0.0069 1.5E-07 57.4 0.1 72 31-107 47-119 (1081)
31 PF14580 LRR_9: Leucine-rich r 95.0 0.017 3.7E-07 43.8 2.2 57 32-95 45-104 (175)
32 PLN03210 Resistant to P. syrin 94.9 0.031 6.7E-07 51.9 4.1 66 34-104 616-683 (1153)
33 COG4886 Leucine-rich repeat (L 94.8 0.016 3.4E-07 46.0 1.7 68 30-102 141-209 (394)
34 KOG4237|consensus 94.8 0.025 5.4E-07 49.9 3.0 56 32-94 49-106 (498)
35 PF14580 LRR_9: Leucine-rich r 94.4 0.03 6.5E-07 42.5 2.4 62 30-98 20-83 (175)
36 KOG1259|consensus 90.3 0.14 2.9E-06 44.8 1.3 64 27-96 305-369 (490)
37 PF13504 LRR_7: Leucine rich r 89.6 0.13 2.7E-06 25.7 0.3 12 59-73 6-17 (17)
38 PRK15386 type III secretion pr 86.3 0.79 1.7E-05 39.9 3.4 55 33-96 98-173 (426)
39 KOG1259|consensus 85.8 0.33 7.2E-06 42.5 0.9 61 29-96 284-346 (490)
40 KOG4194|consensus 82.7 0.86 1.9E-05 42.6 2.2 56 30-89 79-134 (873)
41 smart00364 LRR_BAC Leucine-ric 78.3 1.1 2.3E-05 25.3 0.8 18 81-98 3-21 (26)
42 KOG1859|consensus 76.9 0.41 8.9E-06 45.6 -1.8 65 36-107 171-237 (1096)
43 smart00369 LRR_TYP Leucine-ric 76.7 1.5 3.3E-05 22.8 1.1 14 59-75 7-20 (26)
44 smart00370 LRR Leucine-rich re 76.7 1.5 3.3E-05 22.8 1.1 14 59-75 7-20 (26)
45 KOG4194|consensus 71.0 3.7 8.1E-05 38.6 2.8 64 32-100 152-218 (873)
46 KOG0531|consensus 67.5 3.1 6.6E-05 34.2 1.4 14 33-46 99-112 (414)
47 KOG1644|consensus 66.0 5.2 0.00011 32.8 2.4 37 55-94 64-103 (233)
48 cd00116 LRR_RI Leucine-rich re 58.9 5.3 0.00011 30.0 1.2 54 30-89 166-230 (319)
49 KOG3207|consensus 58.0 4.6 9.9E-05 36.3 0.8 34 53-89 244-280 (505)
50 KOG4237|consensus 57.8 3.3 7E-05 37.0 -0.1 70 16-89 285-355 (498)
51 KOG0531|consensus 56.6 5.7 0.00012 32.6 1.1 59 34-97 77-136 (414)
52 cd00116 LRR_RI Leucine-rich re 50.5 4.6 0.0001 30.3 -0.3 14 76-89 189-202 (319)
53 KOG0473|consensus 46.0 0.68 1.5E-05 39.2 -5.9 70 27-101 16-87 (326)
54 PF01462 LRRNT: Leucine rich r 40.8 17 0.00038 19.8 1.2 17 32-48 11-27 (28)
55 KOG0473|consensus 40.3 4.4 9.6E-05 34.4 -1.9 66 32-102 45-111 (326)
56 PF12212 PAZ_siRNAbind: Piwi/A 31.7 50 0.0011 21.0 2.3 18 18-35 9-26 (47)
57 PF06163 DUF977: Bacterial pro 27.1 66 0.0014 24.2 2.7 28 19-48 41-69 (127)
58 smart00368 LRR_RI Leucine rich 25.4 29 0.00062 18.7 0.4 11 57-70 4-15 (28)
59 PF13306 LRR_5: Leucine rich r 24.8 1.2E+02 0.0025 19.7 3.3 50 33-89 39-90 (129)
60 COG0181 HemC Porphobilinogen d 23.6 51 0.0011 27.9 1.7 53 23-75 62-120 (307)
61 PF07311 Dodecin: Dodecin; In 23.0 59 0.0013 21.6 1.6 22 10-31 9-30 (66)
62 PF15142 INCA1: INCA1 22.1 37 0.00081 26.7 0.5 12 96-107 116-127 (178)
63 smart00365 LRR_SD22 Leucine-ri 21.4 61 0.0013 17.8 1.2 12 59-73 7-18 (26)
No 1
>KOG0532|consensus
Probab=99.71 E-value=1.1e-18 Score=154.37 Aligned_cols=93 Identities=34% Similarity=0.531 Sum_probs=86.0
Q ss_pred CCCCccchhHHHHHHHHHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEE
Q psy18121 7 MNLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVI 86 (109)
Q Consensus 7 ~~~~~~~~~~~~rslerhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~ 86 (109)
.++.|.....|+|++++.+|+|+.||+|.|+||||||||+.+.+|+|+||+++|| |+| ||.++|.+.|.|.+|++|+
T Consensus 28 g~~~g~~~~s~trsl~r~leeA~~sg~l~Ls~rrlk~fpr~a~~~~ltdt~~aDl-srN--R~~elp~~~~~f~~Le~li 104 (722)
T KOG0532|consen 28 GSIPGGQTTSYTRSLERALEEAEYSGRLLLSGRRLKEFPRGAASYDLTDTVFADL-SRN--RFSELPEEACAFVSLESLI 104 (722)
T ss_pred CCCCCCCCcccchhhhHHHHHHhhhcccccccchhhcCCCccccccccchhhhhc-ccc--ccccCchHHHHHHHHHHHH
Confidence 3444456678999999999999999999999999999999988899999999999 999 9999999999999999999
Q ss_pred ecc-eeeccCchhhhhh
Q psy18121 87 VVY-FNITYPGLSMAIR 102 (109)
Q Consensus 87 ~~~-~l~~~P~~~g~l~ 102 (109)
+.- ++-++|+.++.+.
T Consensus 105 Ly~n~~r~ip~~i~~L~ 121 (722)
T KOG0532|consen 105 LYHNCIRTIPEAICNLE 121 (722)
T ss_pred HHhccceecchhhhhhh
Confidence 988 9999999998775
No 2
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.85 E-value=1.9e-05 Score=48.43 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=43.5
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY 89 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~ 89 (109)
-+|.|++++++++|...- ..+..-..+|+ +.| ++.++|+. +..+..|++|++++
T Consensus 4 ~~L~l~~n~l~~i~~~~f-~~l~~L~~L~l-~~N--~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSF-SNLPNLETLDL-SNN--NLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp SEEEETSSTESEECTTTT-TTGTTESEEEE-TSS--SESEEETTTTTTSTTESEEEETS
T ss_pred cEEECCCCCCCccCHHHH-cCCCCCCEeEc-cCC--ccCccCHHHHcCCCCCCEEeCcC
Confidence 368999999999998651 22444344999 888 99999984 69999999999987
No 3
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.1e-05 Score=48.65 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=32.0
Q ss_pred EE-EeeecCccccccccccccccccccceEEecc-eeeccCch
Q psy18121 57 VI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGL 97 (109)
Q Consensus 57 lr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~ 97 (109)
++ +|+ +.| +|++||++|+++..|+.|++++ .+..+|+.
T Consensus 3 L~~L~l-~~N--~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 3 LEELDL-SNN--QITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp -SEEEE-TSS--S-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred ceEEEc-cCC--CCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 45 899 889 9999999999999999999999 87777653
No 4
>KOG0472|consensus
Probab=97.73 E-value=5.7e-06 Score=72.73 Aligned_cols=75 Identities=29% Similarity=0.377 Sum_probs=61.2
Q ss_pred HHHHHhhhhceeEecCCCCCCCCCCCCCccc------------------------------------CCcEEEeeecCcc
Q psy18121 23 RILEEAHLSGELNLSGRKLKDFPNSGGKYDL------------------------------------SDSVIVVYFSRSG 66 (109)
Q Consensus 23 rhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dL------------------------------------sdtlrlDL~S~N~ 66 (109)
+.+.-|-|+|.+++|+|.|++.|.+. |+. ..-+.+++ +.|
T Consensus 3 ~l~k~arksg~lnlsnr~l~~vp~~v--yq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~-~~n- 78 (565)
T KOG0472|consen 3 RLLKAARKSGSLNLSNRSLKDVPTEV--YQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNV-HDN- 78 (565)
T ss_pred hHHHHHHhhcccccccchhhhccHHH--HHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEe-ccc-
Confidence 45778999999999999999999876 432 12223667 788
Q ss_pred ccccccccccccccccceEEecc-eeeccCchhhhhh
Q psy18121 67 RKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIR 102 (109)
Q Consensus 67 ~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~ 102 (109)
++.++|++||+...+++|+||. .+..+|++++.+.
T Consensus 79 -~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~ 114 (565)
T KOG0472|consen 79 -KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLI 114 (565)
T ss_pred -hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhh
Confidence 8999999999999999999998 9999999988764
No 5
>KOG4579|consensus
Probab=97.56 E-value=1.2e-05 Score=62.62 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=54.7
Q ss_pred eEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhhh
Q psy18121 34 LNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQW 106 (109)
Q Consensus 34 L~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~~ 106 (109)
+.|+++.+|+||+.+.. ..+-.+.+.| ++| +++++|.|+..+..|++|+++. .+.-+|..|--|.|-..
T Consensus 58 i~ls~N~fk~fp~kft~-kf~t~t~lNl-~~n--eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 58 ISLSDNGFKKFPKKFTI-KFPTATTLNL-ANN--EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred EecccchhhhCCHHHhh-ccchhhhhhc-chh--hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 67888999999998731 2222233788 889 9999999999999999999999 89999988877766443
No 6
>KOG0617|consensus
Probab=97.49 E-value=2.2e-05 Score=63.58 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=56.4
Q ss_pred HHhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhh
Q psy18121 26 EEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKA 104 (109)
Q Consensus 26 E~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~ 104 (109)
+||..+-- +.|++..|-.-..-++++.++|+-| |-| |++.+|+.|..+.+|+.|++++ .++.+|-.|..|-|-
T Consensus 8 dE~rE~~~---~DrgiSsf~~~~gLf~~s~ITrLtL-SHN--Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~kl 81 (264)
T KOG0617|consen 8 DEARETHN---ADRGISSFEELPGLFNMSNITRLTL-SHN--KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKL 81 (264)
T ss_pred hHhhhhhc---cccccccHhhcccccchhhhhhhhc-ccC--ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhh
Confidence 44443333 7788887776544477888888888 888 8888888888888888888888 888888888887775
Q ss_pred hh
Q psy18121 105 QW 106 (109)
Q Consensus 105 ~~ 106 (109)
..
T Consensus 82 r~ 83 (264)
T KOG0617|consen 82 RI 83 (264)
T ss_pred hh
Confidence 53
No 7
>KOG0444|consensus
Probab=97.32 E-value=3.4e-05 Score=71.51 Aligned_cols=66 Identities=24% Similarity=0.243 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc
Q psy18121 20 SLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY 89 (109)
Q Consensus 20 slerhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~ 89 (109)
-+-+-||.|..+=||+||.+....+|..+- ..|+|-+.+|| |+| |+..||+-|-++.+|++|.+|+
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~IetIPn~lf-inLtDLLfLDL-S~N--rLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNIETIPNSLF-INLTDLLFLDL-SNN--RLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCccccCCchHH-HhhHhHhhhcc-ccc--hhhhcCHHHHHHhhhhhhhcCC
Confidence 344789999999999999999999999862 45999999999 999 9999999999999999999998
No 8
>PLN03150 hypothetical protein; Provisional
Probab=96.98 E-value=0.00048 Score=59.98 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=31.4
Q ss_pred eEecCCCCC-CCCCCCCCcccCCcEEEeeecCcccccc-ccccccccccccceEEecc-eee-ccCchhhhhhhhh
Q psy18121 34 LNLSGRKLK-DFPNSGGKYDLSDSVIVVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-FNI-TYPGLSMAIRKAQ 105 (109)
Q Consensus 34 L~Ls~rkLk-eFP~~~~~~dLsdtlrlDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~l~-~~P~~~g~l~K~~ 105 (109)
|.|++++|+ .+|.++ ..|..-..+|| |.| +|. .+|..++.+..|+.|++++ .+. .+|+.++.+.+-+
T Consensus 423 L~L~~n~L~g~ip~~i--~~L~~L~~L~L-s~N--~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 423 LGLDNQGLRGFIPNDI--SKLRHLQSINL-SGN--SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EECCCCCccccCCHHH--hCCCCCCEEEC-CCC--cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 445555554 334333 22333223555 555 554 4555555555555555555 222 4555555444433
No 9
>KOG0444|consensus
Probab=96.98 E-value=0.0002 Score=66.61 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=69.1
Q ss_pred HHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhh
Q psy18121 23 RILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAI 101 (109)
Q Consensus 23 rhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l 101 (109)
..|+.-+.-..+-||-+.|...|..+ |.|..-.|+.| |.| +|++|-..++.|..|++|++|- .|-.+|+.++-+
T Consensus 216 tsld~l~NL~dvDlS~N~Lp~vPecl--y~l~~LrrLNL-S~N--~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL 290 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLPIVPECL--YKLRNLRRLNL-SGN--KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKL 290 (1255)
T ss_pred CchhhhhhhhhccccccCCCcchHHH--hhhhhhheecc-CcC--ceeeeeccHHHHhhhhhhccccchhccchHHHhhh
Confidence 34555566667788999999999998 88987777999 989 9999999999999999999999 999999999999
Q ss_pred hhhhhc
Q psy18121 102 RKAQWL 107 (109)
Q Consensus 102 ~K~~~~ 107 (109)
.|-.-|
T Consensus 291 ~kL~kL 296 (1255)
T KOG0444|consen 291 TKLTKL 296 (1255)
T ss_pred HHHHHH
Confidence 886543
No 10
>KOG0472|consensus
Probab=96.87 E-value=0.00023 Score=62.88 Aligned_cols=63 Identities=19% Similarity=0.046 Sum_probs=52.3
Q ss_pred hhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchh
Q psy18121 30 LSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLS 98 (109)
Q Consensus 30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~ 98 (109)
.-+||-|..+||||+|.++ +-|..--|+|+ |+| -++.+|...|++ .||.|-+.| -+.|+-.+|
T Consensus 253 ~l~vLDLRdNklke~Pde~--clLrsL~rLDl-SNN--~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 253 SLLVLDLRDNKLKEVPDEI--CLLRSLERLDL-SNN--DISSLPYSLGNL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred cceeeeccccccccCchHH--HHhhhhhhhcc-cCC--ccccCCcccccc-eeeehhhcCCchHHHHHHH
Confidence 3589999999999999988 66776667999 999 999999999999 899998888 776665443
No 11
>KOG0618|consensus
Probab=96.83 E-value=7.4e-05 Score=70.14 Aligned_cols=79 Identities=19% Similarity=0.176 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121 18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 18 ~rslerhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
+++.=..|+-+.+=-||+|+.++|.+||...- ..|.+--.++| |.| |++.||..|.++.+|++|.+-+ ++..||
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~-~kle~LeeL~L-SGN--kL~~Lp~tva~~~~L~tL~ahsN~l~~fP- 446 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL-RKLEELEELNL-SGN--KLTTLPDTVANLGRLHTLRAHSNQLLSFP- 446 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHH-hchHHhHHHhc-ccc--hhhhhhHHHHhhhhhHHHhhcCCceeech-
Confidence 33444566777778899999999999999741 33766666999 888 9999999999999999999988 999999
Q ss_pred hhhhh
Q psy18121 97 LSMAI 101 (109)
Q Consensus 97 ~~g~l 101 (109)
++..+
T Consensus 447 e~~~l 451 (1081)
T KOG0618|consen 447 ELAQL 451 (1081)
T ss_pred hhhhc
Confidence 55443
No 12
>PLN03150 hypothetical protein; Provisional
Probab=96.52 E-value=0.0021 Score=56.04 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=52.5
Q ss_pred ceeEecCCCCC-CCCCCCCCcccCCcEEEeeecCcccccc-ccccccccccccceEEecc-e-eeccCchhhhh
Q psy18121 32 GELNLSGRKLK-DFPNSGGKYDLSDSVIVVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-F-NITYPGLSMAI 101 (109)
Q Consensus 32 GvL~Ls~rkLk-eFP~~~~~~dLsdtlrlDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~-l~~~P~~~g~l 101 (109)
-.|.|++++|. .+|..+. .+..-..+|| |.| +|. .+|..++++..|+.|++++ . ...+|..++.+
T Consensus 445 ~~L~Ls~N~l~g~iP~~~~--~l~~L~~LdL-s~N--~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 445 QSINLSGNSIRGNIPPSLG--SITSLEVLDL-SYN--SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CEEECCCCcccCcCChHHh--CCCCCCEEEC-CCC--CCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 57899999998 7887773 3655445999 999 898 7899999999999999998 4 44889887653
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.41 E-value=0.0041 Score=56.35 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=44.3
Q ss_pred hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchh
Q psy18121 31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLS 98 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~ 98 (109)
..+|.|++.+|.++|..+. .....+|| +.| +|++||..+. ..|+.|++++ .+.++|+.+
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip----~~L~~L~L-s~N--~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l 239 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP----EQITTLIL-DNN--ELKSLPENLQ--GNIKTLYANSNQLTSIPATL 239 (754)
T ss_pred ceEEEeCCCCcCcCCcccc----cCCcEEEe-cCC--CCCcCChhhc--cCCCEEECCCCccccCChhh
Confidence 4689999999999998652 22334888 888 8999988764 4788888877 777777644
No 14
>KOG0532|consensus
Probab=96.26 E-value=0.0006 Score=61.93 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=44.7
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAI 101 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l 101 (109)
-||.++++||+-.|.+.. +..++. +|. |.| -+..+|+.+|.+..|+.|++.- .++.+|+|.+.|
T Consensus 146 kvli~sNNkl~~lp~~ig---~~~tl~~ld~-s~n--ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L 211 (722)
T KOG0532|consen 146 KVLIVSNNKLTSLPEEIG---LLPTLAHLDV-SKN--EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL 211 (722)
T ss_pred eeEEEecCccccCCcccc---cchhHHHhhh-hhh--hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC
Confidence 367778888888887764 444555 777 777 7777777777777777777666 677777766643
No 15
>KOG0617|consensus
Probab=96.19 E-value=0.00077 Score=54.72 Aligned_cols=72 Identities=18% Similarity=0.085 Sum_probs=54.8
Q ss_pred HHHhhhhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhh
Q psy18121 25 LEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIR 102 (109)
Q Consensus 25 LE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~ 102 (109)
|=++..--.|.||.+||.-+|+..+. |-. +. +.+ ++| .++++|..|+.+..||+|+++- ++..+|.-+|++-
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~--l~n-levln~-~nn--qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAE--LKN-LEVLNL-SNN--QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHH--hhh-hhhhhc-ccc--hhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 33444445678889999999987633 433 44 777 888 8999999999999999999987 8888888887653
No 16
>KOG4658|consensus
Probab=96.16 E-value=0.0016 Score=60.01 Aligned_cols=61 Identities=13% Similarity=0.004 Sum_probs=32.6
Q ss_pred CCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhh
Q psy18121 41 LKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQ 105 (109)
Q Consensus 41 LkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~ 105 (109)
+...|... +.--..+| +|| |.| ..+.+||..|+++-+|+-|++++ .+..+|..++.|+|-+
T Consensus 559 l~~is~~f--f~~m~~LrVLDL-s~~-~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 559 LLEISGEF--FRSLPLLRVLDL-SGN-SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred hhhcCHHH--HhhCcceEEEEC-CCC-CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 44444433 22223455 666 544 25556666666666666666666 5555666666555544
No 17
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.15 E-value=0.0041 Score=37.91 Aligned_cols=42 Identities=14% Similarity=0.068 Sum_probs=34.7
Q ss_pred EeeecCcccccccccc-ccccccccceEEecc-eeeccCch-hhhhhh
Q psy18121 59 VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPGL-SMAIRK 103 (109)
Q Consensus 59 lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~~-~g~l~K 103 (109)
+|+ +.| +|+++|+ .+..+..|++|++++ .+..+|.. +.-+.+
T Consensus 6 L~l-~~n--~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~ 50 (61)
T PF13855_consen 6 LDL-SNN--KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPN 50 (61)
T ss_dssp EEE-TSS--TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTT
T ss_pred EEC-CCC--CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCC
Confidence 899 889 9999997 568999999999999 88888863 344444
No 18
>KOG4658|consensus
Probab=96.14 E-value=0.0026 Score=58.62 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=64.3
Q ss_pred HHHhhhhceeEec-CCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc--eeeccCchhhh
Q psy18121 25 LEEAHLSGELNLS-GRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY--FNITYPGLSMA 100 (109)
Q Consensus 25 LE~A~kTGvL~Ls-~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~--~l~~~P~~~g~ 100 (109)
+.....=.||-|| +..+.++|.+.++ |- .+| +|| |.. .+++||..+++|..|.+|++.. ++.++|+.++.
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~--Li-~LryL~L-~~t--~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~ 640 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGE--LV-HLRYLDL-SDT--GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLE 640 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhh--hh-hhhcccc-cCC--CccccchHHHHHHhhheeccccccccccccchhhh
Confidence 4445556799999 8899999998743 43 477 999 988 8999999999999999999998 88899999998
Q ss_pred hhhhhhc
Q psy18121 101 IRKAQWL 107 (109)
Q Consensus 101 l~K~~~~ 107 (109)
|.+-+.|
T Consensus 641 L~~Lr~L 647 (889)
T KOG4658|consen 641 LQSLRVL 647 (889)
T ss_pred cccccEE
Confidence 8776654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.10 E-value=0.0042 Score=56.26 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=29.4
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchh
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLS 98 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~ 98 (109)
.|.|+++++.++|..+ ...++ +|+ |.| +|+.+|..+. ..|+.|++++ .+..+|+.+
T Consensus 245 ~L~Ls~N~L~~LP~~l-----~s~L~~L~L-s~N--~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l 302 (754)
T PRK15370 245 EMELSINRITELPERL-----PSALQSLDL-FHN--KISCLPENLP--EELRYLSVYDNSIRTLPAHL 302 (754)
T ss_pred EEECcCCccCcCChhH-----hCCCCEEEC-cCC--ccCccccccC--CCCcEEECCCCccccCcccc
Confidence 3444444444444432 11334 666 555 6666666553 3566666666 666666543
No 20
>KOG4579|consensus
Probab=95.94 E-value=0.0011 Score=51.80 Aligned_cols=79 Identities=22% Similarity=0.172 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEE---EeeecCcccccccccccc-ccccccceEEecc-eee
Q psy18121 18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVI---VVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNI 92 (109)
Q Consensus 18 ~rslerhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr---lDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~ 92 (109)
|+-+| .-|+|...+.|.||++.|-.+|+.. |.|+.... ++| |+| -|..+|+-+ .+|.-+..|++++ .+.
T Consensus 17 ~evVe-rcedakE~h~ldLssc~lm~i~dav--y~l~~~~el~~i~l-s~N--~fk~fp~kft~kf~t~t~lNl~~neis 90 (177)
T KOG4579|consen 17 NEVVE-RCEDAKELHFLDLSSCQLMYIADAV--YMLSKGYELTKISL-SDN--GFKKFPKKFTIKFPTATTLNLANNEIS 90 (177)
T ss_pred HHHHH-hhHHHHHhhhcccccchhhHHHHHH--HHHhCCceEEEEec-ccc--hhhhCCHHHhhccchhhhhhcchhhhh
Confidence 44444 4588999999999999999888887 66764433 899 999 899999954 6999999999999 999
Q ss_pred ccCchhhhhh
Q psy18121 93 TYPGLSMAIR 102 (109)
Q Consensus 93 ~~P~~~g~l~ 102 (109)
.+|+|+-.|.
T Consensus 91 dvPeE~Aam~ 100 (177)
T KOG4579|consen 91 DVPEELAAMP 100 (177)
T ss_pred hchHHHhhhH
Confidence 9999976653
No 21
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=95.92 E-value=0.0073 Score=53.23 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=29.2
Q ss_pred EeeecCcccccc-ccccccccccccceEEecc-e-eeccCchhhhhhhhhhc
Q psy18121 59 VVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-F-NITYPGLSMAIRKAQWL 107 (109)
Q Consensus 59 lDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~-l~~~P~~~g~l~K~~~~ 107 (109)
+|| |.| ++. .+|..++.+..|+.|++++ . ...+|+.++.+++-+.|
T Consensus 145 L~L-s~n--~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 145 LDL-SNN--MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred EEC-cCC--cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 666 555 554 5666777777777777776 3 24667766666655443
No 22
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.92 E-value=0.0049 Score=36.98 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=30.7
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN 74 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~ 74 (109)
+|.|++++++++|.++ ..|..-..+|+ |.| +|+++|+
T Consensus 5 ~L~l~~N~i~~l~~~l--~~l~~L~~L~l-~~N--~i~~i~~ 41 (44)
T PF12799_consen 5 ELDLSNNQITDLPPEL--SNLPNLETLNL-SNN--PISDISP 41 (44)
T ss_dssp EEEETSSS-SSHGGHG--TTCTTSSEEEE-TSS--CCSBEGG
T ss_pred EEEccCCCCcccCchH--hCCCCCCEEEe-cCC--CCCCCcC
Confidence 6899999999999987 44877667999 888 9998875
No 23
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=95.60 E-value=0.0083 Score=52.88 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=35.0
Q ss_pred eeEecCCCCC-CCCCCCCCcccCCcEEEeeecCcccccc-ccccccccccccceEEecc-ee-eccCchhhhhhhhh
Q psy18121 33 ELNLSGRKLK-DFPNSGGKYDLSDSVIVVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-FN-ITYPGLSMAIRKAQ 105 (109)
Q Consensus 33 vL~Ls~rkLk-eFP~~~~~~dLsdtlrlDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~l-~~~P~~~g~l~K~~ 105 (109)
+|.|+++++. .+|....+ +..-..+|+ +.| .+. .+|..++++..|++|++++ .+ ..+|+.++.+++-+
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~--l~~L~~L~L-~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGS--FSSLKVLDL-GGN--VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred EEECcCCcccccCChHHhc--CCCCCEEEC-ccC--cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 4555555554 44544422 332222666 666 543 5566666666666666665 22 24565555554433
No 24
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0057 Score=31.93 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=15.5
Q ss_pred EE-EeeecCcccccccccccccc
Q psy18121 57 VI-VVYFSRSGRKLKDFPNSGGK 78 (109)
Q Consensus 57 lr-lDL~S~N~~rl~elP~~I~~ 78 (109)
++ +|+ |.| +|+++|+++++
T Consensus 2 L~~Ldl-s~n--~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDL-SGN--NLTSIPSSFSN 21 (22)
T ss_dssp ESEEEE-TSS--EESEEGTTTTT
T ss_pred ccEEEC-CCC--cCEeCChhhcC
Confidence 44 899 888 99999998765
No 25
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.55 E-value=0.017 Score=50.01 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecC-ccccccccccccccccccceEEecc--eeec
Q psy18121 18 ARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSR-SGRKLKDFPNSGGKYDLSDSVIVVY--FNIT 93 (109)
Q Consensus 18 ~rslerhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~-N~~rl~elP~~I~~F~~LksL~~~~--~l~~ 93 (109)
+-++.| ++++...+.|.+++++|+++|. +...++ +++ +. + .++.+|..+. ..|++|.+++ .+..
T Consensus 42 ~~a~~r-~~~~~~l~~L~Is~c~L~sLP~------LP~sLtsL~L-snc~--nLtsLP~~LP--~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 42 SEITPQ-IEEARASGRLYIKDCDIESLPV------LPNELTEITI-ENCN--NLTTLPGSIP--EGLEKLTVCHCPEISG 109 (426)
T ss_pred HHHHHH-HHHhcCCCEEEeCCCCCcccCC------CCCCCcEEEc-cCCC--CcccCCchhh--hhhhheEccCcccccc
Confidence 344455 8888999999999999999993 444555 888 43 4 6888887663 5788888877 4556
Q ss_pred cCchhhhh
Q psy18121 94 YPGLSMAI 101 (109)
Q Consensus 94 ~P~~~g~l 101 (109)
+|+.+..|
T Consensus 110 LP~sLe~L 117 (426)
T PRK15386 110 LPESVRSL 117 (426)
T ss_pred cccccceE
Confidence 66655433
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.52 E-value=0.026 Score=51.82 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=36.5
Q ss_pred hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCch
Q psy18121 31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGL 97 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~ 97 (109)
..+|.|++++|+++|..+.. ....+++ +.| +|+.||.. ...|++|++++ .+.++|..
T Consensus 203 ~~~LdLs~~~LtsLP~~l~~----~L~~L~L-~~N--~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l 260 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLPA----HITTLVI-PDN--NLTSLPAL---PPELRTLEVSGNQLTSLPVL 260 (788)
T ss_pred CcEEEcCCCCCCcCCcchhc----CCCEEEc-cCC--cCCCCCCC---CCCCcEEEecCCccCcccCc
Confidence 45799999999999987521 2222666 555 66666653 35566666666 56566543
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.37 E-value=0.012 Score=54.46 Aligned_cols=48 Identities=8% Similarity=-0.071 Sum_probs=39.5
Q ss_pred cEE-EeeecCccccccccccccccccccceEEecc--eeeccCchhhhhhhhhh
Q psy18121 56 SVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY--FNITYPGLSMAIRKAQW 106 (109)
Q Consensus 56 tlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~--~l~~~P~~~g~l~K~~~ 106 (109)
+++ +|| +.| .|+++|..|+.|..|+.|.+++ .+.++|..++.+++-++
T Consensus 847 nL~~L~L-s~n--~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 847 NISDLNL-SRT--GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897 (1153)
T ss_pred ccCEeEC-CCC--CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence 355 888 888 8999999999999999999998 78888888777665443
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.31 E-value=0.0078 Score=55.15 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=19.4
Q ss_pred EeeecCccccccccccccccccccceEEecc
Q psy18121 59 VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY 89 (109)
Q Consensus 59 lDL~S~N~~rl~elP~~I~~F~~LksL~~~~ 89 (109)
+|+ +.| .|+.||..++++..|+.|++++
T Consensus 427 L~L-s~N--qLt~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 427 LSV-YRN--QLTRLPESLIHLSSETTVNLEG 454 (788)
T ss_pred hhh-ccC--cccccChHHhhccCCCeEECCC
Confidence 666 666 6667777777777777777766
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.06 E-value=0.0084 Score=47.52 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=26.9
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchh
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLS 98 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~ 98 (109)
+|.+.+....++|..... +...++ +|+ +.| .+.++|..++.+..|+.|.+++ .+..+|...
T Consensus 120 ~L~l~~n~i~~i~~~~~~--~~~nL~~L~l-~~N--~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~ 182 (394)
T COG4886 120 SLDLDNNNITDIPPLIGL--LKSNLKELDL-SDN--KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL 182 (394)
T ss_pred EEecCCcccccCcccccc--chhhcccccc-ccc--chhhhhhhhhccccccccccCCchhhhhhhhh
Confidence 444445555555544311 111233 444 444 4444444444444444444444 444444443
No 30
>KOG0618|consensus
Probab=94.98 E-value=0.0069 Score=57.36 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=59.3
Q ss_pred hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhhhc
Q psy18121 31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQWL 107 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~~~ 107 (109)
=-+|.||++.+..||..+ ..+.--.++.+ |+| -+.++|..+++...|+.|++.+ ++.++|..+-.++--|.|
T Consensus 47 L~~l~lsnn~~~~fp~~i--t~l~~L~~ln~-s~n--~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQI--TLLSHLRQLNL-SRN--YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL 119 (1081)
T ss_pred eEEeeccccccccCCchh--hhHHHHhhccc-chh--hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence 356789999999999987 33543344889 999 9999999999999999999999 999999988888765543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=94.96 E-value=0.017 Score=43.77 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=18.6
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCcccccccccccc-ccccccceEEecc-eeeccC
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~~~P 95 (109)
-+|.||+++++.++.-. . | ..++ +|+ ++| ++++++..+ ..|.+|++|.+++ ++..+-
T Consensus 45 ~~L~Ls~N~I~~l~~l~-~--L-~~L~~L~L-~~N--~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~ 104 (175)
T PF14580_consen 45 EVLDLSNNQITKLEGLP-G--L-PRLKTLDL-SNN--RISSISEGLDKNLPNLQELYLSNNKISDLN 104 (175)
T ss_dssp -EEE-TTS--S--TT--------TT--EEE---SS-----S-CHHHHHH-TT--EEE-TTS---SCC
T ss_pred CEEECCCCCCccccCcc-C--h-hhhhhccc-CCC--CCCccccchHHhCCcCCEEECcCCcCCChH
Confidence 45666666666665321 1 2 2344 666 666 677765544 2466677777766 555543
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=94.91 E-value=0.031 Score=51.89 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=29.6
Q ss_pred eEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc--eeeccCchhhhhhhh
Q psy18121 34 LNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY--FNITYPGLSMAIRKA 104 (109)
Q Consensus 34 L~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~--~l~~~P~~~g~l~K~ 104 (109)
|.|++++++.+|... ..+..-..+|| +.|. .+.++|. ++.+..|++|++++ .+..+|..++-+.+-
T Consensus 616 L~L~~s~l~~L~~~~--~~l~~Lk~L~L-s~~~-~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 616 LQMQGSKLEKLWDGV--HSLTGLRNIDL-RGSK-NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred EECcCcccccccccc--ccCCCCCEEEC-CCCC-CcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCC
Confidence 444444444444433 22332222555 3331 2444442 44555555555555 355555555555443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.80 E-value=0.016 Score=45.98 Aligned_cols=68 Identities=18% Similarity=0.118 Sum_probs=47.6
Q ss_pred hhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhh
Q psy18121 30 LSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIR 102 (109)
Q Consensus 30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~ 102 (109)
.-..|.+++++++++|..... +..-..+|+ +.| +++++|..++....|+.|++++ .+..+|..++...
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~--l~~L~~L~l-~~N--~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~ 209 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRN--LPNLKNLDL-SFN--DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLS 209 (394)
T ss_pred hcccccccccchhhhhhhhhc--ccccccccc-CCc--hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhh
Confidence 345677888888888654421 333333888 777 8888888888888888888888 8888887765443
No 34
>KOG4237|consensus
Probab=94.77 E-value=0.025 Score=49.93 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=46.7
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeecc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITY 94 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~ 94 (109)
+..-=++++|+|+|..+ -.+|+.++| -.| .|++||+. ++.|..|+-|++|. .++++
T Consensus 49 ~~VdCr~~GL~eVP~~L----P~~tveirL-dqN--~I~~iP~~aF~~l~~LRrLdLS~N~Is~I 106 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANL----PPETVEIRL-DQN--QISSIPPGAFKTLHRLRRLDLSKNNISFI 106 (498)
T ss_pred ceEEccCCCcccCcccC----CCcceEEEe-ccC--CcccCChhhccchhhhceecccccchhhc
Confidence 56667899999999987 446777888 889 99999995 68999999999999 55544
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=94.42 E-value=0.03 Score=42.46 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=17.8
Q ss_pred hhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchh
Q psy18121 30 LSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLS 98 (109)
Q Consensus 30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~ 98 (109)
+--+|.|.|+++..+..-. ..| +.++ +|| |.| .++.++. +..+..|+.|++++ ++.++++.+
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~--~~l-~~L~~L~L-s~N--~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLG--ATL-DKLEVLDL-SNN--QITKLEG-LPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp ----------------S----TT--TT--EEE--TTS----S--TT-----TT--EEE--SS---S-CHHH
T ss_pred ccccccccccccccccchh--hhh-cCCCEEEC-CCC--CCccccC-ccChhhhhhcccCCCCCCccccch
Confidence 3467999999999875422 123 4556 999 999 9999984 77899999999999 998887543
No 36
>KOG1259|consensus
Probab=90.34 E-value=0.14 Score=44.82 Aligned_cols=64 Identities=17% Similarity=0.043 Sum_probs=42.8
Q ss_pred HhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121 27 EAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 27 ~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
-+-+-.+|.+|.+++.++-. + ..|..-+.+|| |.| +++++--+=.++.+.|+|++++ .++++-+
T Consensus 305 L~Pkir~L~lS~N~i~~v~n-L--a~L~~L~~LDL-S~N--~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSG 369 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTVQN-L--AELPQLQLLDL-SGN--LLAECVGWHLKLGNIKTLKLAQNKIETLSG 369 (490)
T ss_pred hccceeEEeccccceeeehh-h--hhcccceEeec-ccc--hhHhhhhhHhhhcCEeeeehhhhhHhhhhh
Confidence 34455677777777777766 3 23554455777 777 7777777777777777777777 6666544
No 37
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.58 E-value=0.13 Score=25.73 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=6.4
Q ss_pred EeeecCccccccccc
Q psy18121 59 VVYFSRSGRKLKDFP 73 (109)
Q Consensus 59 lDL~S~N~~rl~elP 73 (109)
+|+ |.| +|++||
T Consensus 6 L~l-~~n--~L~~lP 17 (17)
T PF13504_consen 6 LDL-SNN--RLTSLP 17 (17)
T ss_dssp EEE-TSS----SSE-
T ss_pred EEC-CCC--CCCCCc
Confidence 677 666 677776
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=86.28 E-value=0.79 Score=39.91 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=33.7
Q ss_pred eeEecCC-CCCCCCCCCCCcccCCcEEEeeecCc-ccccccccccccccc------------------ccceEEecc-ee
Q psy18121 33 ELNLSGR-KLKDFPNSGGKYDLSDSVIVVYFSRS-GRKLKDFPNSGGKYD------------------LSDSVIVVY-FN 91 (109)
Q Consensus 33 vL~Ls~r-kLkeFP~~~~~~dLsdtlrlDL~S~N-~~rl~elP~~I~~F~------------------~LksL~~~~-~l 91 (109)
.|.++++ .|+++|..+.. +++ +.| -..+.+||+.+..+. +|+.|.+++ .+
T Consensus 98 ~L~Ls~Cs~L~sLP~sLe~--------L~L-~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 98 KLTVCHCPEISGLPESVRS--------LEI-KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN 168 (426)
T ss_pred heEccCcccccccccccce--------EEe-CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc
Confidence 5677776 77777776633 334 222 124777887776553 578888887 44
Q ss_pred eccCc
Q psy18121 92 ITYPG 96 (109)
Q Consensus 92 ~~~P~ 96 (109)
..+|+
T Consensus 169 i~LP~ 173 (426)
T PRK15386 169 IILPE 173 (426)
T ss_pred ccCcc
Confidence 44444
No 39
>KOG1259|consensus
Probab=85.81 E-value=0.33 Score=42.46 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=50.1
Q ss_pred hhhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121 29 HLSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 29 ~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
|.--++-||++-.++|.++. .|..-+| +|+ |.| ++.++-. +..+.+|.+|.+|| .+..+-+
T Consensus 284 q~LtelDLS~N~I~~iDESv---KL~Pkir~L~l-S~N--~i~~v~n-La~L~~L~~LDLS~N~Ls~~~G 346 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESV---KLAPKLRRLIL-SQN--RIRTVQN-LAELPQLQLLDLSGNLLAECVG 346 (490)
T ss_pred hhhhhccccccchhhhhhhh---hhccceeEEec-ccc--ceeeehh-hhhcccceEeecccchhHhhhh
Confidence 33456889999999999986 3666677 999 999 9999988 88999999999999 6655543
No 40
>KOG4194|consensus
Probab=82.72 E-value=0.86 Score=42.62 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=40.2
Q ss_pred hhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc
Q psy18121 30 LSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY 89 (109)
Q Consensus 30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~ 89 (109)
.|..|.||++||.+...+.- |+|..-..+-+ -+| +++++|..++.-..|++|.+..
T Consensus 79 ~t~~LdlsnNkl~~id~~~f-~nl~nLq~v~l-~~N--~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFF-YNLPNLQEVNL-NKN--ELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred ceeeeeccccccccCcHHHH-hcCCcceeeee-ccc--hhhhcccccccccceeEEeeec
Confidence 34568888888888876521 55554333778 445 8999998888888888888766
No 41
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.26 E-value=1.1 Score=25.31 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=13.6
Q ss_pred ccceEEecc-eeeccCchh
Q psy18121 81 LSDSVIVVY-FNITYPGLS 98 (109)
Q Consensus 81 ~LksL~~~~-~l~~~P~~~ 98 (109)
+|+.|+|++ +|.++|+..
T Consensus 3 ~L~~L~vs~N~Lt~LPeL~ 21 (26)
T smart00364 3 SLKELNVSNNQLTSLPELX 21 (26)
T ss_pred ccceeecCCCccccCcccc
Confidence 577888888 888888754
No 42
>KOG1859|consensus
Probab=76.90 E-value=0.41 Score=45.57 Aligned_cols=65 Identities=22% Similarity=0.120 Sum_probs=43.2
Q ss_pred ecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhhhc
Q psy18121 36 LSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQWL 107 (109)
Q Consensus 36 Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~~~ 107 (109)
-+-++|.-+..++ .|..-++ +|| |.| ||..+- .+-.+..||||.+|+ +|-.+|-..++=-|-|.|
T Consensus 171 fsyN~L~~mD~SL---qll~ale~LnL-shN--k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 171 FSYNRLVLMDESL---QLLPALESLNL-SHN--KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred cchhhHHhHHHHH---HHHHHhhhhcc-chh--hhhhhH-HHHhcccccccccccchhccccccchhhhhheee
Confidence 3445555555543 2444566 788 888 888777 777788888888888 888888776665554443
No 43
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=76.69 E-value=1.5 Score=22.80 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=8.7
Q ss_pred EeeecCccccccccccc
Q psy18121 59 VVYFSRSGRKLKDFPNS 75 (109)
Q Consensus 59 lDL~S~N~~rl~elP~~ 75 (109)
+|| +.| +|+++|..
T Consensus 7 L~L-~~N--~l~~lp~~ 20 (26)
T smart00369 7 LDL-SNN--QLSSLPPG 20 (26)
T ss_pred EEC-CCC--cCCcCCHH
Confidence 666 555 66666654
No 44
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=76.69 E-value=1.5 Score=22.80 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=8.7
Q ss_pred EeeecCccccccccccc
Q psy18121 59 VVYFSRSGRKLKDFPNS 75 (109)
Q Consensus 59 lDL~S~N~~rl~elP~~ 75 (109)
+|| +.| +|+++|..
T Consensus 7 L~L-~~N--~l~~lp~~ 20 (26)
T smart00370 7 LDL-SNN--QLSSLPPG 20 (26)
T ss_pred EEC-CCC--cCCcCCHH
Confidence 666 555 66666654
No 45
>KOG4194|consensus
Probab=70.98 E-value=3.7 Score=38.58 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=35.7
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCcccccccccc-ccccccccceEEecc-eeeccCchhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPGLSMA 100 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~~~g~ 100 (109)
.+|-||-+.+.|+|..- +-=..++. +|| +.| ||+++-. .+..|+.|-.|.++. ++.++|--+-.
T Consensus 152 rslDLSrN~is~i~~~s--fp~~~ni~~L~L-a~N--~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk 218 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPS--FPAKVNIKKLNL-ASN--RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFK 218 (873)
T ss_pred hhhhhhhchhhcccCCC--CCCCCCceEEee-ccc--cccccccccccccchheeeecccCcccccCHHHhh
Confidence 45666777776666543 21222333 666 666 6666655 245555666666666 66666654443
No 46
>KOG0531|consensus
Probab=67.46 E-value=3.1 Score=34.16 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=6.2
Q ss_pred eeEecCCCCCCCCC
Q psy18121 33 ELNLSGRKLKDFPN 46 (109)
Q Consensus 33 vL~Ls~rkLkeFP~ 46 (109)
.|.|.+++++.+..
T Consensus 99 ~l~l~~n~i~~i~~ 112 (414)
T KOG0531|consen 99 ALDLYDNKIEKIEN 112 (414)
T ss_pred eeeccccchhhccc
Confidence 34444444444444
No 47
>KOG1644|consensus
Probab=65.96 E-value=5.2 Score=32.78 Aligned_cols=37 Identities=3% Similarity=0.020 Sum_probs=29.2
Q ss_pred CcEE-EeeecCcccccccccccccccc-ccceEEecc-eeecc
Q psy18121 55 DSVI-VVYFSRSGRKLKDFPNSGGKYD-LSDSVIVVY-FNITY 94 (109)
Q Consensus 55 dtlr-lDL~S~N~~rl~elP~~I~~F~-~LksL~~~~-~l~~~ 94 (109)
+.+. ++| ++| ||+++-+.++.|- +|++|.+.+ .+-.+
T Consensus 64 ~rL~tLll-~nN--rIt~I~p~L~~~~p~l~~L~LtnNsi~~l 103 (233)
T KOG1644|consen 64 PRLHTLLL-NNN--RITRIDPDLDTFLPNLKTLILTNNSIQEL 103 (233)
T ss_pred cccceEEe-cCC--cceeeccchhhhccccceEEecCcchhhh
Confidence 3455 888 788 9999999998766 599999998 55443
No 48
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=58.86 E-value=5.3 Score=29.96 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=28.3
Q ss_pred hhceeEecCCCCCC-----CCCCCCCcccCCcEE-EeeecCcccccc-----ccccccccccccceEEecc
Q psy18121 30 LSGELNLSGRKLKD-----FPNSGGKYDLSDSVI-VVYFSRSGRKLK-----DFPNSGGKYDLSDSVIVVY 89 (109)
Q Consensus 30 kTGvL~Ls~rkLke-----FP~~~~~~dLsdtlr-lDL~S~N~~rl~-----elP~~I~~F~~LksL~~~~ 89 (109)
+-.+|.|+++.+.+ ++..+. .+ ..++ +|+ +.| .+. .++..+..+..|+.|++++
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~--~~-~~L~~L~L-~~n--~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLK--AN-CNLEVLDL-NNN--GLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHH--hC-CCCCEEec-cCC--ccChHHHHHHHHHhcccCCCCEEecCC
Confidence 34566777776663 222221 11 2344 666 666 553 3444455666677777766
No 49
>KOG3207|consensus
Probab=58.03 E-value=4.6 Score=36.26 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=28.0
Q ss_pred cCCcEE-EeeecCccccccccc--cccccccccceEEecc
Q psy18121 53 LSDSVI-VVYFSRSGRKLKDFP--NSGGKYDLSDSVIVVY 89 (109)
Q Consensus 53 Lsdtlr-lDL~S~N~~rl~elP--~~I~~F~~LksL~~~~ 89 (109)
...+++ +|| |+| -+-++| ..++.|.-|.+|++++
T Consensus 244 i~~~L~~LdL-s~N--~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 244 ILQTLQELDL-SNN--NLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred hhhHHhhccc-cCC--cccccccccccccccchhhhhccc
Confidence 445677 899 888 788888 6789999999999988
No 50
>KOG4237|consensus
Probab=57.79 E-value=3.3 Score=37.04 Aligned_cols=70 Identities=14% Similarity=0.032 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc
Q psy18121 16 HLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY 89 (109)
Q Consensus 16 ~~~rslerhLE~A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~ 89 (109)
++++--+..+|.|.+-.+|.|..++|..|-.-.- ..|+.-..++| .+| +|+.+-+ .+-....|.+|++-.
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f-~~ls~L~tL~L-~~N--~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMF-QGLSGLKTLSL-YDN--QITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhh-hccccceeeee-cCC--eeEEEecccccccceeeeeehcc
Confidence 4555566788888888889999999988887541 23554444888 555 8888755 566777777777643
No 51
>KOG0531|consensus
Probab=56.56 E-value=5.7 Score=32.58 Aligned_cols=59 Identities=15% Similarity=0.064 Sum_probs=40.2
Q ss_pred eEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCch
Q psy18121 34 LNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGL 97 (109)
Q Consensus 34 L~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~ 97 (109)
+.+..+.+.++=..+ ..+..-..+|+ .+| +|..+...+..+..|.+|++++ .+..+.+.
T Consensus 77 l~l~~n~i~~~~~~l--~~~~~l~~l~l-~~n--~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l 136 (414)
T KOG0531|consen 77 LNLRQNLIAKILNHL--SKLKSLEALDL-YDN--KIEKIENLLSSLVNLQVLDLSFNKITKLEGL 136 (414)
T ss_pred hccchhhhhhhhccc--ccccceeeeec-ccc--chhhcccchhhhhcchheeccccccccccch
Confidence 335555555522222 22333344889 778 9999999899999999999999 77666554
No 52
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=50.45 E-value=4.6 Score=30.26 Aligned_cols=14 Identities=0% Similarity=-0.417 Sum_probs=7.0
Q ss_pred cccccccceEEecc
Q psy18121 76 GGKYDLSDSVIVVY 89 (109)
Q Consensus 76 I~~F~~LksL~~~~ 89 (109)
+..+..|++|++++
T Consensus 189 l~~~~~L~~L~L~~ 202 (319)
T cd00116 189 LKANCNLEVLDLNN 202 (319)
T ss_pred HHhCCCCCEEeccC
Confidence 33444555555555
No 53
>KOG0473|consensus
Probab=45.97 E-value=0.68 Score=39.15 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=35.4
Q ss_pred HhhhhceeEecCCCCCCCCC-CCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhh
Q psy18121 27 EAHLSGELNLSGRKLKDFPN-SGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAI 101 (109)
Q Consensus 27 ~A~kTGvL~Ls~rkLkeFP~-~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l 101 (109)
++.--|.|-|+---|.|.|- +. |..--.+-+|+ |.| |+..+-..+..++-|.-|.++. ...++|+-.+-+
T Consensus 16 ~~vv~~tc~~s~s~~s~~~v~ei--~~~kr~tvld~-~s~--r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~ 87 (326)
T KOG0473|consen 16 ERVVDETCDLSLSELSEIPVREI--ASFKRVTVLDL-SSN--RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQ 87 (326)
T ss_pred HHHhhcccCCCHHHhcccchhhh--hccceeeeehh-hhh--HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHH
Confidence 34444556666666666662 22 22222233555 555 5555555555555555555555 555555544443
No 54
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=40.82 E-value=17 Score=19.83 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=10.9
Q ss_pred ceeEecCCCCCCCCCCC
Q psy18121 32 GELNLSGRKLKDFPNSG 48 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~ 48 (109)
.+..=++++|+++|..+
T Consensus 11 ~~V~C~~~~L~~vP~~l 27 (28)
T PF01462_consen 11 LTVDCSGRGLTAVPSDL 27 (28)
T ss_dssp TEEEETTSS-SSS-STS
T ss_pred CEeECCCCCCCccCCCC
Confidence 35566889999999764
No 55
>KOG0473|consensus
Probab=40.27 E-value=4.4 Score=34.38 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=51.4
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIR 102 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~ 102 (109)
-+|-|+.++|-..-... .-|+.-+|+|+ |+| -+..+|.+.+....+.++..-+ +++..|-..+-.+
T Consensus 45 tvld~~s~r~vn~~~n~--s~~t~~~rl~~-skn--q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 45 TVLDLSSNRLVNLGKNF--SILTRLVRLDL-SKN--QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEP 111 (326)
T ss_pred eeehhhhhHHHhhccch--HHHHHHHHHhc-cHh--hHhhChhhHHHHHHHHHHHhhccchhhCCccccccC
Confidence 35667777776665555 33667788999 988 9999999999999998888777 9999997766544
No 56
>PF12212 PAZ_siRNAbind: Piwi/Argonaute/Zwille siRNA-binding domain; InterPro: IPR021103 This entry represents a siRNA binding repeat found in bacterial and archaeal proteins, which is approximately 50 amino acids in length. There is a conserved LKDIL sequence motif and a single completely conserved residue L that may be functionally important []. ; PDB: 1Z26_A 1Z25_A 1U04_A 3DA5_B.
Probab=31.72 E-value=50 Score=20.97 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhhceeE
Q psy18121 18 ARSLERILEEAHLSGELN 35 (109)
Q Consensus 18 ~rslerhLE~A~kTGvL~ 35 (109)
+++++..|.+|+..|.|+
T Consensus 9 ~kaie~iL~~akEN~iLK 26 (47)
T PF12212_consen 9 SKAIEEILKVAKENGILK 26 (47)
T ss_dssp HHHHHHHHHHTTTTEEEE
T ss_pred hHHHHHHHHHHHhhcHHH
Confidence 588999999999999986
No 57
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.13 E-value=66 Score=24.18 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhhceeEecCC-CCCCCCCCC
Q psy18121 19 RSLERILEEAHLSGELNLSGR-KLKDFPNSG 48 (109)
Q Consensus 19 rslerhLE~A~kTGvL~Ls~r-kLkeFP~~~ 48 (109)
-++++|+.++..+|.+.-+|+ ++ ||.+-
T Consensus 41 ~Tvk~~lreLVa~G~l~~~G~~Gv--F~seq 69 (127)
T PF06163_consen 41 NTVKRYLRELVARGDLYRHGRSGV--FPSEQ 69 (127)
T ss_pred HHHHHHHHHHHHcCCeEeCCCccc--cccHH
Confidence 468999999999999999998 55 77753
No 58
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=25.44 E-value=29 Score=18.68 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=7.6
Q ss_pred EE-EeeecCcccccc
Q psy18121 57 VI-VVYFSRSGRKLK 70 (109)
Q Consensus 57 lr-lDL~S~N~~rl~ 70 (109)
++ +|| |.| .|.
T Consensus 4 L~~LdL-~~N--~i~ 15 (28)
T smart00368 4 LRELDL-SNN--KLG 15 (28)
T ss_pred cCEEEC-CCC--CCC
Confidence 44 888 888 664
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=24.84 E-value=1.2e+02 Score=19.70 Aligned_cols=50 Identities=10% Similarity=0.222 Sum_probs=22.6
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccc-cccccccceEEecc
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY 89 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~-I~~F~~LksL~~~~ 89 (109)
.+.+.+ .++.++..+ +.-...++ +++ .++ +..++.. +.....|+.+.+..
T Consensus 39 ~i~~~~-~~~~i~~~~--F~~~~~l~~i~~-~~~---~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 39 SINFPN-NLTSIGDNA--FSNCKSLESITF-PNN---LKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp EEEESS-TTSCE-TTT--TTT-TT-EEEEE-TST---T-EE-TTTTTT-TTECEEEETT
T ss_pred cccccc-cccccceee--eecccccccccc-ccc---ccccccccccccccccccccCc
Confidence 455555 366666654 33332233 666 433 5555553 33466666666644
No 60
>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism]
Probab=23.60 E-value=51 Score=27.93 Aligned_cols=53 Identities=30% Similarity=0.407 Sum_probs=39.6
Q ss_pred HHHHHhhhhceeEecCCCCCCCCCCC-CCcccCCcEE----Eee-ecCccccccccccc
Q psy18121 23 RILEEAHLSGELNLSGRKLKDFPNSG-GKYDLSDSVI----VVY-FSRSGRKLKDFPNS 75 (109)
Q Consensus 23 rhLE~A~kTGvL~Ls~rkLkeFP~~~-~~~dLsdtlr----lDL-~S~N~~rl~elP~~ 75 (109)
+-||.|...|.+-+.=..+|++|... ....|.-++. .|. -|+++-.+.+||.-
T Consensus 62 kEle~all~g~~DiAVHSlKDvP~~~p~gL~laai~~R~dprDalVs~~~~~l~~LP~G 120 (307)
T COG0181 62 KELEQALLEGEIDIAVHSLKDVPTELPEGLVLAAIPEREDPRDALVSRDGYDLEELPEG 120 (307)
T ss_pred HHHHHHHHcCCCCEEEeecccCCccCCCCceEEEecCCCChhheEEECCCCchhhCCCC
Confidence 78899999999999999999999875 3444433322 232 48887778999973
No 61
>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology. Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....
Probab=22.97 E-value=59 Score=21.65 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=19.2
Q ss_pred CccchhHHHHHHHHHHHHhhhh
Q psy18121 10 TSQSQVHLARSLERILEEAHLS 31 (109)
Q Consensus 10 ~~~~~~~~~rslerhLE~A~kT 31 (109)
.|.++..+-++++.++++|.+|
T Consensus 9 vgsS~~S~edAv~~Av~~A~kT 30 (66)
T PF07311_consen 9 VGSSPKSWEDAVQNAVARASKT 30 (66)
T ss_dssp EEEESSHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHHhhc
Confidence 4667788999999999999987
No 62
>PF15142 INCA1: INCA1
Probab=22.06 E-value=37 Score=26.72 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=9.6
Q ss_pred chhhhhhhhhhc
Q psy18121 96 GLSMAIRKAQWL 107 (109)
Q Consensus 96 ~~~g~l~K~~~~ 107 (109)
.+|-+++||||=
T Consensus 116 riInElKkAqWG 127 (178)
T PF15142_consen 116 RIINELKKAQWG 127 (178)
T ss_pred HHHHHHHHhhcC
Confidence 467889999994
No 63
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=21.37 E-value=61 Score=17.76 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=9.1
Q ss_pred EeeecCccccccccc
Q psy18121 59 VVYFSRSGRKLKDFP 73 (109)
Q Consensus 59 lDL~S~N~~rl~elP 73 (109)
+|| +.| ||+.+.
T Consensus 7 L~L-~~N--kI~~IE 18 (26)
T smart00365 7 LDL-SQN--KIKKIE 18 (26)
T ss_pred EEC-CCC--ccceec
Confidence 888 888 886653
Done!