Query psy18121
Match_columns 109
No_of_seqs 88 out of 90
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 23:03:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 98.5 3.5E-07 1.2E-11 69.5 7.2 84 19-107 69-155 (328)
2 4b8c_D Glucose-repressible alc 98.2 6.4E-07 2.2E-11 76.1 3.8 69 33-106 228-297 (727)
3 2r9u_A Variable lymphocyte rec 98.2 1.8E-06 6.2E-11 60.5 4.7 66 32-102 36-105 (174)
4 4b8c_D Glucose-repressible alc 98.1 1.1E-06 3.9E-11 74.6 3.8 71 32-107 250-321 (727)
5 3e6j_A Variable lymphocyte rec 98.1 2.4E-06 8.2E-11 61.6 5.0 68 32-103 67-136 (229)
6 3g39_A Variable lymphocyte rec 98.1 3.1E-06 1.1E-10 58.8 5.1 70 31-105 32-105 (170)
7 2r9u_A Variable lymphocyte rec 98.1 3.6E-06 1.2E-10 59.0 5.1 68 32-106 15-85 (174)
8 1w8a_A SLIT protein; signaling 98.1 4E-06 1.4E-10 59.0 5.1 65 33-104 12-80 (192)
9 3e6j_A Variable lymphocyte rec 98.1 4E-06 1.4E-10 60.5 4.6 68 32-103 91-160 (229)
10 3g39_A Variable lymphocyte rec 98.0 6.5E-06 2.2E-10 57.2 5.1 58 33-97 13-72 (170)
11 2wfh_A SLIT homolog 2 protein 98.0 7.2E-06 2.5E-10 58.2 5.2 59 32-95 34-94 (193)
12 1dce_A Protein (RAB geranylger 98.0 5.8E-06 2E-10 68.7 5.0 65 33-104 445-510 (567)
13 1dce_A Protein (RAB geranylger 98.0 6.2E-06 2.1E-10 68.5 4.6 71 31-107 465-538 (567)
14 4fcg_A Uncharacterized protein 98.0 7E-06 2.4E-10 62.3 4.5 64 32-100 107-172 (328)
15 1a9n_A U2A', U2A'; complex (nu 97.9 3.9E-06 1.3E-10 57.8 2.4 59 32-96 45-105 (176)
16 2o6r_A Variable lymphocyte rec 97.9 1.5E-05 5E-10 54.6 4.6 62 32-97 55-118 (177)
17 3m19_A Variable lymphocyte rec 97.8 2E-05 6.9E-10 56.8 4.6 60 33-96 111-172 (251)
18 3m19_A Variable lymphocyte rec 97.8 2.4E-05 8.2E-10 56.4 4.7 67 32-103 86-156 (251)
19 4eco_A Uncharacterized protein 97.8 1.9E-05 6.5E-10 65.2 4.6 69 32-105 460-539 (636)
20 2v9t_B SLIT homolog 2 protein 97.8 2.5E-05 8.6E-10 56.1 4.7 62 32-97 35-98 (220)
21 3o53_A Protein LRIM1, AGAP0063 97.8 8.9E-06 3E-10 60.8 2.4 67 32-104 172-239 (317)
22 2v70_A SLIT-2, SLIT homolog 2 97.8 2E-05 7E-10 56.6 4.2 66 33-102 85-153 (220)
23 2o6s_A Variable lymphocyte rec 97.8 2.7E-05 9.1E-10 54.4 4.6 35 59-96 105-141 (208)
24 2wfh_A SLIT homolog 2 protein 97.8 2.9E-05 1E-09 55.0 4.9 61 32-96 57-119 (193)
25 2je0_A Acidic leucine-rich nuc 97.8 2.5E-05 8.6E-10 51.8 4.1 66 32-103 20-89 (149)
26 4g8a_A TOLL-like receptor 4; l 97.8 1.6E-05 5.6E-10 62.0 3.6 59 32-95 55-116 (635)
27 2ell_A Acidic leucine-rich nuc 97.8 3.1E-05 1.1E-09 52.3 4.6 68 31-104 26-97 (168)
28 1a9n_A U2A', U2A'; complex (nu 97.7 1.9E-05 6.4E-10 54.3 3.5 61 32-97 67-131 (176)
29 1p9a_G Platelet glycoprotein I 97.7 2.7E-05 9.1E-10 58.3 4.6 64 33-101 128-194 (290)
30 4g8a_A TOLL-like receptor 4; l 97.7 2.3E-05 7.9E-10 61.2 4.3 67 33-106 35-104 (635)
31 1w8a_A SLIT protein; signaling 97.7 2.9E-05 1E-09 54.5 4.5 65 33-102 58-126 (192)
32 2v70_A SLIT-2, SLIT homolog 2 97.7 2E-05 6.9E-10 56.6 3.7 60 33-95 36-97 (220)
33 2o6r_A Variable lymphocyte rec 97.7 4.2E-05 1.4E-09 52.3 5.1 69 31-103 30-101 (177)
34 2o6s_A Variable lymphocyte rec 97.7 3.5E-05 1.2E-09 53.8 4.7 60 32-96 55-117 (208)
35 2z80_A TOLL-like receptor 2, v 97.7 3.4E-05 1.2E-09 57.9 4.8 66 30-103 32-101 (353)
36 1xku_A Decorin; proteoglycan, 97.7 4.1E-05 1.4E-09 56.8 5.2 64 33-103 35-101 (330)
37 2v9t_B SLIT homolog 2 protein 97.7 3.8E-05 1.3E-09 55.1 4.6 61 32-96 83-145 (220)
38 2ell_A Acidic leucine-rich nuc 97.7 2.1E-05 7.3E-10 53.1 2.8 28 68-95 106-136 (168)
39 2ifg_A High affinity nerve gro 97.7 2.3E-05 7.8E-10 58.6 3.2 62 32-98 34-99 (347)
40 2ifg_A High affinity nerve gro 97.7 4E-05 1.4E-09 57.2 4.5 68 33-106 12-84 (347)
41 2z7x_B TOLL-like receptor 1, v 97.6 3.4E-05 1.1E-09 60.4 3.9 67 32-105 3-72 (520)
42 2je0_A Acidic leucine-rich nuc 97.6 1.6E-05 5.6E-10 52.7 1.6 35 59-96 93-130 (149)
43 3o53_A Protein LRIM1, AGAP0063 97.6 2.7E-05 9.3E-10 58.1 2.6 69 32-105 194-265 (317)
44 1p9a_G Platelet glycoprotein I 97.6 8.5E-05 2.9E-09 55.5 5.3 59 33-96 81-141 (290)
45 2o6q_A Variable lymphocyte rec 97.6 7.9E-05 2.7E-09 54.2 4.9 61 32-96 40-102 (270)
46 2xot_A Amphoterin-induced prot 97.6 6.9E-05 2.4E-09 57.2 4.7 56 33-95 22-80 (361)
47 2ft3_A Biglycan; proteoglycan, 97.6 7.1E-05 2.4E-09 55.7 4.6 65 33-104 37-104 (332)
48 3a79_B TLR6, VLRB.59, TOLL-lik 97.6 7.2E-05 2.5E-09 59.7 5.0 68 32-106 34-104 (562)
49 4ecn_A Leucine-rich repeat pro 97.6 6.6E-05 2.3E-09 66.3 5.2 71 31-106 699-780 (876)
50 3oja_A Leucine-rich immune mol 97.6 2.7E-05 9.2E-10 62.6 2.4 67 32-104 172-239 (487)
51 2z81_A CD282 antigen, TOLL-lik 97.5 9.3E-05 3.2E-09 57.9 4.9 65 31-102 7-74 (549)
52 2ft3_A Biglycan; proteoglycan, 97.5 5.4E-05 1.9E-09 56.3 3.4 41 59-102 222-264 (332)
53 1ds9_A Outer arm dynein; leuci 97.5 2E-05 6.7E-10 55.1 0.9 58 32-95 51-109 (198)
54 1xku_A Decorin; proteoglycan, 97.5 9.5E-05 3.3E-09 54.8 4.5 64 31-99 54-120 (330)
55 2z80_A TOLL-like receptor 2, v 97.5 4.6E-05 1.6E-09 57.2 2.7 14 33-46 56-69 (353)
56 2o6q_A Variable lymphocyte rec 97.5 0.00011 3.8E-09 53.4 4.6 60 33-96 137-198 (270)
57 3rgz_A Protein brassinosteroid 97.5 9.7E-05 3.3E-09 62.0 4.9 67 33-104 636-706 (768)
58 1ogq_A PGIP-2, polygalacturona 97.5 0.00011 3.9E-09 55.0 4.8 68 33-105 54-128 (313)
59 4ay9_X Follicle-stimulating ho 97.5 0.00013 4.4E-09 55.3 5.1 58 32-96 12-72 (350)
60 3rfs_A Internalin B, repeat mo 97.5 0.00012 4.2E-09 53.4 4.7 59 33-95 89-149 (272)
61 1ozn_A Reticulon 4 receptor; N 97.5 0.00011 3.8E-09 53.4 4.3 22 68-89 164-186 (285)
62 1ogq_A PGIP-2, polygalacturona 97.5 6.7E-05 2.3E-09 56.2 3.2 64 33-101 105-172 (313)
63 1ds9_A Outer arm dynein; leuci 97.5 1.2E-05 4E-10 56.3 -0.9 62 40-107 36-98 (198)
64 2z63_A TOLL-like receptor 4, v 97.5 0.0001 3.5E-09 57.6 4.3 69 32-104 79-151 (570)
65 3o6n_A APL1; leucine-rich repe 97.5 9.1E-05 3.1E-09 56.2 3.9 62 32-97 72-135 (390)
66 4eco_A Uncharacterized protein 97.5 0.00011 3.9E-09 60.5 4.8 72 32-106 491-570 (636)
67 4glp_A Monocyte differentiatio 97.4 0.00011 3.7E-09 54.5 4.1 62 30-96 225-289 (310)
68 2xot_A Amphoterin-induced prot 97.4 9.5E-05 3.2E-09 56.4 3.8 61 33-97 92-154 (361)
69 2z62_A TOLL-like receptor 4, v 97.4 0.00013 4.4E-09 52.8 4.3 22 68-89 111-133 (276)
70 3rfs_A Internalin B, repeat mo 97.4 0.00016 5.4E-09 52.9 4.7 59 33-95 113-173 (272)
71 3t6q_A CD180 antigen; protein- 97.4 0.00015 5E-09 57.7 4.9 64 33-103 16-82 (606)
72 3o6n_A APL1; leucine-rich repe 97.4 0.00011 3.7E-09 55.7 3.9 68 32-104 251-320 (390)
73 1xeu_A Internalin C; cellular 97.4 0.00014 4.8E-09 53.6 4.4 62 31-99 43-105 (263)
74 1ozn_A Reticulon 4 receptor; N 97.4 0.00015 5.1E-09 52.7 4.5 67 32-102 108-177 (285)
75 3a79_B TLR6, VLRB.59, TOLL-lik 97.4 0.00012 4E-09 58.5 4.0 40 59-103 105-147 (562)
76 3vq2_A TLR4, TOLL-like recepto 97.4 0.00018 6E-09 57.2 4.8 68 32-104 35-106 (606)
77 1wwl_A Monocyte differentiatio 97.4 0.0002 6.7E-09 53.3 4.7 69 30-105 229-299 (312)
78 1wwl_A Monocyte differentiatio 97.3 0.00024 8.4E-09 52.8 5.1 49 32-89 256-305 (312)
79 2z81_A CD282 antigen, TOLL-lik 97.3 9.2E-05 3.1E-09 58.0 2.8 28 59-89 79-107 (549)
80 2xwt_C Thyrotropin receptor; s 97.3 0.00025 8.7E-09 50.3 4.8 59 33-97 160-223 (239)
81 2z66_A Variable lymphocyte rec 97.3 6.9E-05 2.4E-09 54.8 1.8 16 32-47 31-46 (306)
82 3t6q_A CD180 antigen; protein- 97.3 0.00021 7.1E-09 56.8 4.6 68 32-103 257-326 (606)
83 2z7x_B TOLL-like receptor 1, v 97.3 0.00014 4.7E-09 56.9 3.4 70 30-106 46-119 (520)
84 1xeu_A Internalin C; cellular 97.3 0.00024 8.2E-09 52.4 4.5 61 32-102 88-150 (263)
85 2z62_A TOLL-like receptor 4, v 97.3 0.0002 6.9E-09 51.7 4.0 58 33-95 32-92 (276)
86 3cvr_A Invasion plasmid antige 97.3 0.00019 6.4E-09 60.4 4.3 40 59-101 212-253 (571)
87 3v47_A TOLL-like receptor 5B a 97.3 0.00014 4.9E-09 55.5 3.2 35 59-96 352-388 (455)
88 3vq2_A TLR4, TOLL-like recepto 97.3 0.0004 1.4E-08 55.2 5.6 67 32-103 83-154 (606)
89 2z66_A Variable lymphocyte rec 97.3 0.00024 8.1E-09 52.0 4.0 55 33-94 11-67 (306)
90 3oja_A Leucine-rich immune mol 97.2 0.00012 4.2E-09 58.7 2.6 68 32-104 194-264 (487)
91 4ezg_A Putative uncharacterize 97.2 0.00039 1.3E-08 48.4 4.8 67 32-105 47-115 (197)
92 2xwt_C Thyrotropin receptor; s 97.2 0.00017 5.8E-09 51.3 2.9 52 33-88 35-88 (239)
93 2id5_A Lingo-1, leucine rich r 97.2 0.00032 1.1E-08 54.4 4.7 60 32-96 35-97 (477)
94 4ay9_X Follicle-stimulating ho 97.2 0.00027 9.3E-09 53.5 4.0 62 31-97 156-220 (350)
95 3oja_B Anopheles plasmodium-re 97.2 0.00024 8.1E-09 57.8 3.9 69 32-105 257-327 (597)
96 3oja_B Anopheles plasmodium-re 97.2 0.00024 8.3E-09 57.7 3.9 61 32-97 78-141 (597)
97 1h6u_A Internalin H; cell adhe 97.2 0.00039 1.3E-08 52.1 4.7 57 32-95 44-101 (308)
98 1h6t_A Internalin B; cell adhe 97.2 0.00043 1.5E-08 51.6 4.6 64 32-103 49-113 (291)
99 3zyi_A Leucine-rich repeat-con 97.1 0.0003 1E-08 54.8 3.7 13 33-45 79-91 (452)
100 1ziw_A TOLL-like receptor 3; i 97.1 0.00051 1.7E-08 55.5 5.2 50 33-89 8-58 (680)
101 3rgz_A Protein brassinosteroid 97.1 0.00048 1.6E-08 57.8 5.1 67 33-104 470-540 (768)
102 2id5_A Lingo-1, leucine rich r 97.1 0.0003 1E-08 54.5 3.6 64 33-103 15-81 (477)
103 3cvr_A Invasion plasmid antige 97.1 0.0003 1E-08 59.1 3.8 63 32-106 163-234 (571)
104 3zyj_A Leucine-rich repeat-con 97.1 0.00026 8.9E-09 55.0 3.2 15 32-46 67-81 (440)
105 2z63_A TOLL-like receptor 4, v 97.1 0.00033 1.1E-08 54.8 3.6 59 32-95 31-92 (570)
106 4ecn_A Leucine-rich repeat pro 97.1 0.00025 8.7E-09 62.6 3.2 68 30-103 549-619 (876)
107 3v47_A TOLL-like receptor 5B a 97.1 0.00033 1.1E-08 53.5 3.4 41 59-102 328-371 (455)
108 3zyi_A Leucine-rich repeat-con 97.0 0.00063 2.2E-08 53.0 4.7 65 32-103 57-124 (452)
109 1h6u_A Internalin H; cell adhe 97.0 0.00053 1.8E-08 51.3 4.1 57 32-95 66-123 (308)
110 1jl5_A Outer protein YOPM; leu 97.0 0.00052 1.8E-08 54.7 4.2 40 56-99 132-173 (454)
111 3g06_A SSPH2 (leucine-rich rep 97.0 0.00064 2.2E-08 57.5 4.5 39 59-103 246-285 (622)
112 3rfe_A Platelet glycoprotein I 97.0 0.0011 3.6E-08 45.6 4.7 51 32-89 11-64 (130)
113 3zyj_A Leucine-rich repeat-con 96.9 0.00091 3.1E-08 51.9 4.8 64 32-102 46-112 (440)
114 1ziw_A TOLL-like receptor 3; i 96.9 0.0005 1.7E-08 55.5 3.2 66 32-102 76-145 (680)
115 4ezg_A Putative uncharacterize 96.9 0.00074 2.5E-08 47.0 3.6 28 59-89 117-145 (197)
116 1h6t_A Internalin B; cell adhe 96.9 0.00099 3.4E-08 49.6 4.3 34 59-96 161-195 (291)
117 4fmz_A Internalin; leucine ric 96.9 0.00097 3.3E-08 49.2 4.1 57 32-95 47-104 (347)
118 4fmz_A Internalin; leucine ric 96.8 0.0013 4.5E-08 48.5 4.7 68 28-103 65-133 (347)
119 1o6v_A Internalin A; bacterial 96.8 0.0014 4.8E-08 51.2 4.7 64 32-103 49-113 (466)
120 1jl5_A Outer protein YOPM; leu 96.8 0.0011 3.8E-08 52.8 4.1 34 59-96 178-212 (454)
121 4glp_A Monocyte differentiatio 96.7 0.001 3.5E-08 49.3 3.6 49 32-89 254-303 (310)
122 1o6v_A Internalin A; bacterial 96.7 0.0013 4.5E-08 51.4 4.2 58 31-95 70-128 (466)
123 3bz5_A Internalin-J, INLJ; leu 96.7 0.0014 4.9E-08 52.2 4.4 56 32-95 45-101 (457)
124 3j0a_A TOLL-like receptor 5; m 96.6 0.0026 8.7E-08 54.0 5.2 49 33-89 8-57 (844)
125 1m9s_A Internalin B; cell inva 96.5 0.0018 6.3E-08 54.3 3.9 56 33-95 47-103 (605)
126 3g06_A SSPH2 (leucine-rich rep 96.5 0.0026 8.9E-08 53.8 4.8 54 32-96 43-98 (622)
127 3bz5_A Internalin-J, INLJ; leu 96.5 0.0028 9.5E-08 50.6 4.5 63 30-103 65-128 (457)
128 1m9s_A Internalin B; cell inva 96.3 0.0033 1.1E-07 52.8 4.5 56 32-94 68-124 (605)
129 3j0a_A TOLL-like receptor 5; m 95.9 0.0064 2.2E-07 51.5 4.3 12 33-44 77-88 (844)
130 2ast_B S-phase kinase-associat 95.4 0.0046 1.6E-07 45.2 1.3 69 29-102 70-142 (336)
131 3rw6_A Nuclear RNA export fact 95.0 0.057 2E-06 41.7 6.4 63 29-97 170-239 (267)
132 2ca6_A RAN GTPase-activating p 93.3 0.012 4E-07 44.6 -0.5 28 59-89 279-312 (386)
133 2ast_B S-phase kinase-associat 93.3 0.012 4E-07 43.1 -0.6 29 59-90 227-257 (336)
134 3goz_A Leucine-rich repeat-con 92.8 0.023 7.8E-07 43.0 0.4 33 59-94 85-124 (362)
135 2ca6_A RAN GTPase-activating p 92.7 0.012 4.2E-07 44.5 -1.3 60 25-89 183-253 (386)
136 3rw6_A Nuclear RNA export fact 92.4 0.06 2.1E-06 41.5 2.3 42 57-102 173-218 (267)
137 3goz_A Leucine-rich repeat-con 92.2 0.023 7.8E-07 43.0 -0.4 59 31-94 24-95 (362)
138 3sb4_A Hypothetical leucine ri 90.3 0.22 7.6E-06 37.0 3.4 61 29-95 226-289 (329)
139 1z7x_W Ribonuclease inhibitor; 85.6 0.095 3.2E-06 39.8 -1.2 11 33-43 203-213 (461)
140 1z7x_W Ribonuclease inhibitor; 84.3 0.17 5.9E-06 38.4 -0.3 57 29-89 56-122 (461)
141 3ogk_B Coronatine-insensitive 83.1 0.063 2.1E-06 42.2 -3.3 26 72-97 212-238 (592)
142 3ogk_B Coronatine-insensitive 79.8 0.49 1.7E-05 37.1 0.7 60 31-96 465-529 (592)
143 3sb4_A Hypothetical leucine ri 79.0 2.8 9.7E-05 31.0 4.7 58 32-96 253-314 (329)
144 3rfe_A Platelet glycoprotein I 74.7 2.4 8.1E-05 28.6 3.0 32 31-65 33-65 (130)
145 4fdw_A Leucine rich hypothetic 69.7 3.7 0.00013 32.3 3.4 50 40-94 167-217 (401)
146 2p1m_B Transport inhibitor res 64.3 0.98 3.3E-05 35.3 -0.9 13 77-89 208-220 (594)
147 3un9_A NLR family member X1; l 64.0 1 3.5E-05 35.1 -0.8 14 76-89 207-220 (372)
148 3un9_A NLR family member X1; l 63.7 0.69 2.3E-05 36.1 -1.9 55 32-89 129-192 (372)
149 4fdw_A Leucine rich hypothetic 55.9 10 0.00035 29.7 3.7 57 32-94 183-240 (401)
150 1io0_A Tropomodulin; LRR prote 45.6 3.9 0.00013 28.3 -0.3 15 73-87 114-128 (185)
151 2ra8_A Uncharacterized protein 45.3 4.9 0.00017 31.5 0.2 32 56-90 280-317 (362)
152 2p1m_B Transport inhibitor res 40.0 3.1 0.00011 32.4 -1.6 11 32-42 108-118 (594)
153 3e4g_A ATP synthase subunit S, 27.3 50 0.0017 23.8 3.1 31 57-90 63-95 (176)
154 4h09_A Hypothetical leucine ri 25.2 55 0.0019 24.2 3.1 33 59-94 291-324 (379)
155 4gt6_A Cell surface protein; l 23.9 67 0.0023 24.2 3.4 32 59-94 316-348 (394)
156 4h09_A Hypothetical leucine ri 23.5 54 0.0018 24.3 2.8 55 33-93 290-346 (379)
157 3plu_A Ubiquitin-like modifier 20.9 1.2E+02 0.0042 20.2 3.9 42 17-61 43-90 (93)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.47 E-value=3.5e-07 Score=69.48 Aligned_cols=84 Identities=18% Similarity=0.314 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhhhc--eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121 19 RSLERILEEAHLSG--ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 19 rslerhLE~A~kTG--vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P 95 (109)
+.+...++.+..++ +|.|+++++.++|..+ ..+..-..+|| +.| +|+++|..++++..|+.|++++ .+..+|
T Consensus 69 ~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l--~~l~~L~~L~L-~~n--~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp 143 (328)
T 4fcg_A 69 KATADLLEDATQPGRVALELRSVPLPQFPDQA--FRLSHLQHMTI-DAA--GLMELPDTMQQFAGLETLTLARNPLRALP 143 (328)
T ss_dssp HHHHHHHHHHTSTTCCEEEEESSCCSSCCSCG--GGGTTCSEEEE-ESS--CCCCCCSCGGGGTTCSEEEEESCCCCCCC
T ss_pred hhhHHHHhcccccceeEEEccCCCchhcChhh--hhCCCCCEEEC-CCC--CccchhHHHhccCCCCEEECCCCccccCc
Confidence 45556677775555 6899999999999988 55765555999 888 9999999999999999999999 888999
Q ss_pred chhhhhhhhhhc
Q psy18121 96 GLSMAIRKAQWL 107 (109)
Q Consensus 96 ~~~g~l~K~~~~ 107 (109)
+.++.+.+-+.|
T Consensus 144 ~~l~~l~~L~~L 155 (328)
T 4fcg_A 144 ASIASLNRLREL 155 (328)
T ss_dssp GGGGGCTTCCEE
T ss_pred HHHhcCcCCCEE
Confidence 999888765543
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.22 E-value=6.4e-07 Score=76.14 Aligned_cols=69 Identities=9% Similarity=0.047 Sum_probs=45.6
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhhh
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQW 106 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~~ 106 (109)
+|.|+++++.++|..+ +.+..-..+|| |.| +|+++|..|+.+..|+.|++++ .+.++|+.++.|.+-+.
T Consensus 228 ~L~Ls~n~l~~l~~~~--~~l~~L~~L~L-s~N--~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 228 ALDLSNLQIFNISANI--FKYDFLTRLYL-NGN--SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp EEECTTSCCSCCCGGG--GGCCSCSCCBC-TTS--CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred EEECCCCCCCCCChhh--cCCCCCCEEEe-eCC--cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 5777777777777766 34543333777 666 6777777777777777777777 66677776666655443
No 3
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.18 E-value=1.8e-06 Score=60.55 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=36.1
Q ss_pred ceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccccccc-ccccccceEEecc-eeeccCch-hhhhh
Q psy18121 32 GELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNITYPGL-SMAIR 102 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~~~P~~-~g~l~ 102 (109)
-+|.|+++++.++|.. +. .+..-..+|| |.| +|+.+|+.+ +.+..|+.|++++ .+..+|.. ++.+.
T Consensus 36 ~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L-s~N--~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 105 (174)
T 2r9u_A 36 QRLWLNNNQITKLEPGVFD--HLVNLQQLYF-NSN--KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLK 105 (174)
T ss_dssp SEEECCSSCCCCCCTTTTT--TCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cEEEeCCCCccccCHHHhc--CCcCCCEEEC-CCC--CCCccChhHhCCcchhhEEECCCCccceeCHHHhcccc
Confidence 3566666666666442 21 2333233666 666 666666653 5666666666666 66666653 44443
No 4
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.15 E-value=1.1e-06 Score=74.64 Aligned_cols=71 Identities=21% Similarity=0.225 Sum_probs=59.8
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhhhc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQWL 107 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~~~ 107 (109)
-.|.|++++|.++|..+ ..|..-..+|| |.| +|++||..|+.+..|+.|++++ .+.++|+.++.+.+-+.|
T Consensus 250 ~~L~Ls~N~l~~lp~~~--~~l~~L~~L~L-s~N--~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEI--KNLSNLRVLDL-SHN--RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp SCCBCTTSCCSCCCGGG--GGGTTCCEEEC-TTS--CCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCE
T ss_pred CEEEeeCCcCcccChhh--hCCCCCCEEeC-cCC--cCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEE
Confidence 47889999999999887 44665455999 888 9999999999999999999999 888999998888765544
No 5
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.15 E-value=2.4e-06 Score=61.61 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=36.2
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCchhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGLSMAIRK 103 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~~g~l~K 103 (109)
-+|.|+++++.++|...- ..+..-..+|| |.| +|+.+|+. ++.+..|+.|++++ .+.++|+.++.+.+
T Consensus 67 ~~L~L~~N~l~~i~~~~~-~~l~~L~~L~L-s~N--~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 136 (229)
T 3e6j_A 67 KELYLGSNQLGALPVGVF-DSLTQLTVLDL-GTN--QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTH 136 (229)
T ss_dssp CEEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTT
T ss_pred cEEECCCCCCCCcChhhc-ccCCCcCEEEC-CCC--cCCccChhHhCcchhhCeEeccCCcccccCcccccCCC
Confidence 456666666666665430 11222222666 555 66666654 35566666666666 55566655554444
No 6
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.13 E-value=3.1e-06 Score=58.82 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=47.9
Q ss_pred hceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccccccc-ccccccceEEecc-eeeccCch-hhhhhhhh
Q psy18121 31 SGELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNITYPGL-SMAIRKAQ 105 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~~~P~~-~g~l~K~~ 105 (109)
.-+|.|++++++++|.. +. .+..-..+|| |.| +|+.+|+.+ ..+..|+.|++++ .+..+|.. ++.+.+-+
T Consensus 32 l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L-s~N--~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFD--RLTQLTRLDL-DNN--QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTT--TCTTCSEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcEEEcCCCcCCccChhhhc--CcccCCEEEC-CCC--CcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 35678888888888554 42 2444444888 777 888888864 7888888888888 77777764 55555433
No 7
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.10 E-value=3.6e-06 Score=58.98 Aligned_cols=68 Identities=7% Similarity=-0.038 Sum_probs=54.8
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCchh-hhhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPGLS-MAIRKAQW 106 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~~~-g~l~K~~~ 106 (109)
.++.+++++|.++|..+. .....+|| +.| +|+.+|+ .++.+..|+.|++++ .+..+|..+ +.+.+-+.
T Consensus 15 ~~l~~~~n~l~~iP~~~~----~~L~~L~L-s~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP----TDKQRLWL-NNN--QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCCSSCCSCCC----TTCSEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCCCccCCCcC----CCCcEEEe-CCC--CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 478999999999999762 33334999 999 9999955 689999999999999 999999864 55555443
No 8
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.09 E-value=4e-06 Score=58.96 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=35.9
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc--cccccccceEEecc-eeecc-Cchhhhhhhh
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS--GGKYDLSDSVIVVY-FNITY-PGLSMAIRKA 104 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~--I~~F~~LksL~~~~-~l~~~-P~~~g~l~K~ 104 (109)
++.+++++|+++|..+.. ....+|+ +.| +|+.+|+. ++.+..|+.|++++ .+..+ |+.++.+.+-
T Consensus 12 ~l~~s~~~l~~ip~~~~~----~l~~L~l-~~n--~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIPL----HTTELLL-NDN--ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp EEECTTSCCSSCCSCCCT----TCSEEEC-CSC--CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred EEEcCCCCcCcCccCCCC----CCCEEEC-CCC--cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 456666666666665411 2223666 555 66666653 56666666666666 55544 4555544443
No 9
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.06 E-value=4e-06 Score=60.45 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=53.0
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCc-hhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG-LSMAIRK 103 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~-~~g~l~K 103 (109)
-+|.|+++++..+|...- ..+..-..+|| +.| +|+++|..+..+..|+.|++++ .+..+|. .+..+.+
T Consensus 91 ~~L~Ls~N~l~~l~~~~~-~~l~~L~~L~L-s~N--~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVF-DRLVHLKELFM-CCN--KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160 (229)
T ss_dssp CEEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEECCCCcCCccChhHh-CcchhhCeEec-cCC--cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCC
Confidence 579999999999998651 12443333999 888 9999999999999999999999 8888885 3444443
No 10
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.03 E-value=6.5e-06 Score=57.18 Aligned_cols=58 Identities=9% Similarity=0.089 Sum_probs=28.4
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCch
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPGL 97 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~~ 97 (109)
++.+++++|+++|..+ ......+|| +.| +|+.+|+ .++.+..|+.|++++ .+..+|..
T Consensus 13 ~l~~s~n~l~~ip~~~----~~~l~~L~L-~~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 72 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI----PTTTQVLYL-YDN--QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 72 (170)
T ss_dssp EEECTTSCCSSCCSCC----CTTCSEEEC-CSS--CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EEEeCCCCcCccCccC----CCCCcEEEc-CCC--cCCccChhhhcCcccCCEEECCCCCcCccChh
Confidence 4555555555555443 112222555 555 5555533 355555555555555 55555543
No 11
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.01 E-value=7.2e-06 Score=58.16 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=29.8
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccC
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P 95 (109)
-+|.|+++++.++|..+ ..+..-..+|| |.| +|+.+|+ .++.+..|+.|++++ .+..+|
T Consensus 34 ~~L~L~~n~i~~ip~~~--~~l~~L~~L~L-s~N--~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~ 94 (193)
T 2wfh_A 34 TELYLDGNQFTLVPKEL--SNYKHLTLIDL-SNN--RISTLSNQSFSNMTQLLTLILSYNRLRCIP 94 (193)
T ss_dssp CEEECCSSCCCSCCGGG--GGCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CEEECCCCcCchhHHHh--hcccCCCEEEC-CCC--cCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence 34555555555555433 22333223555 555 5555554 255555566666655 555554
No 12
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.99 E-value=5.8e-06 Score=68.65 Aligned_cols=65 Identities=11% Similarity=-0.003 Sum_probs=46.9
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhh
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKA 104 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~ 104 (109)
+|.|++++|.++|. + ..+..-..+|| |.| +|+++|..++.+..|+.|++++ .+..+| .++.+.+-
T Consensus 445 ~L~Ls~n~l~~lp~-~--~~l~~L~~L~L-s~N--~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L 510 (567)
T 1dce_A 445 VLHLAHKDLTVLCH-L--EQLLLVTHLDL-SHN--RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRL 510 (567)
T ss_dssp EEECTTSCCSSCCC-G--GGGTTCCEEEC-CSS--CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSC
T ss_pred EEEecCCCCCCCcC-c--cccccCcEeec-Ccc--cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCC
Confidence 68888888888886 5 33554444888 777 7888888888888888888877 777777 55555443
No 13
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.96 E-value=6.2e-06 Score=68.50 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=60.6
Q ss_pred hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeecc--Cchhhhhhhhhhc
Q psy18121 31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITY--PGLSMAIRKAQWL 107 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~--P~~~g~l~K~~~~ 107 (109)
=-.|.|++++|.++|..+ ..+..-..+|| |.| +|+.+| .++.+..|+.|++++ .+..+ |+.++.+.+-+.|
T Consensus 465 L~~L~Ls~N~l~~lp~~~--~~l~~L~~L~L-s~N--~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 465 VTHLDLSHNRLRALPPAL--AALRCLEVLQA-SDN--ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp CCEEECCSSCCCCCCGGG--GGCTTCCEEEC-CSS--CCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred CcEeecCcccccccchhh--hcCCCCCEEEC-CCC--CCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 357999999999999987 44765555999 999 999999 899999999999999 88888 8999888765543
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.96 E-value=7e-06 Score=62.30 Aligned_cols=64 Identities=11% Similarity=0.166 Sum_probs=50.1
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc--eeeccCchhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY--FNITYPGLSMA 100 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~--~l~~~P~~~g~ 100 (109)
-+|.|+++++.++|..+ ..+..-..+|+ +.| +|+.+|..++.+..|+.|++++ .+..+|+.++.
T Consensus 107 ~~L~L~~n~l~~lp~~~--~~l~~L~~L~L-s~n--~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 107 QHMTIDAAGLMELPDTM--QQFAGLETLTL-ARN--PLRALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SEEEEESSCCCCCCSCG--GGGTTCSEEEE-ESC--CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred CEEECCCCCccchhHHH--hccCCCCEEEC-CCC--ccccCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 57889999999999877 44665445899 888 8889998888888888888887 56677776543
No 15
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.92 E-value=3.9e-06 Score=57.75 Aligned_cols=59 Identities=5% Similarity=0.042 Sum_probs=28.3
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccccc-ccccccceEEecc-eeeccCc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~~~P~ 96 (109)
-.|.|+++++.++ ..+. .+..-..+|+ |.| +|+.+|+.+ +.+..|+.|++++ .+..+|+
T Consensus 45 ~~L~Ls~N~l~~~-~~l~--~l~~L~~L~L-s~N--~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 105 (176)
T 1a9n_A 45 DAIDFSDNEIRKL-DGFP--LLRRLKTLLV-NNN--RICRIGEGLDQALPDLTELILTNNSLVELGD 105 (176)
T ss_dssp SEEECCSSCCCEE-CCCC--CCSSCCEEEC-CSS--CCCEECSCHHHHCTTCCEEECCSCCCCCGGG
T ss_pred CEEECCCCCCCcc-cccc--cCCCCCEEEC-CCC--cccccCcchhhcCCCCCEEECCCCcCCcchh
Confidence 3455555555555 2221 1222222555 555 555555444 5555555555555 4444554
No 16
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.88 E-value=1.5e-05 Score=54.57 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=30.9
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCch
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL 97 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~ 97 (109)
-+|.|+++++.++|...- ..+..-..+|+ +.| +|+.+|+. ++.+..|+.|++++ .+..+|..
T Consensus 55 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l-~~N--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 118 (177)
T 2o6r_A 55 TKLSLSQNQIQSLPDGVF-DKLTKLTILYL-HEN--KLQSLPNGVFDKLTQLKELALDTNQLKSVPDG 118 (177)
T ss_dssp SEEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cEEECCCCcceEeChhHc-cCCCccCEEEC-CCC--CccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence 345555555555554430 11222222555 555 56655554 35555666666655 55555543
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.81 E-value=2e-05 Score=56.82 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=27.1
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCc
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
+|.|+++++.++|...- ..+..-..+|| +.| +|+.+|+ .++.+..|++|++++ .+..+|.
T Consensus 111 ~L~L~~N~l~~~~~~~~-~~l~~L~~L~L-s~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVF-DRLTKLKELRL-NTN--QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp EEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EEEcCCCcCCCcChhHh-ccCCcccEEEC-cCC--cCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 44444444444444320 01222222555 555 5555555 345555555555555 4444443
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.79 E-value=2.4e-05 Score=56.42 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=39.7
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccc-cccccccceEEecc-eeeccCc-hhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPG-LSMAIRK 103 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~-~~g~l~K 103 (109)
.+|.|+++++.++|...- ..+ ..++ +|| +.| +|+.+|+. ++.+..|+.|++++ .+..+|. .++.+.+
T Consensus 86 ~~L~L~~n~l~~~~~~~~-~~l-~~L~~L~L-~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVF-DHL-TQLDKLYL-GGN--QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp CEEECTTSCCCCCCTTTT-TTC-TTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEECCCCcccccChhHh-ccc-CCCCEEEc-CCC--cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 456666666666665430 113 2344 777 666 77777765 36677777777777 6666665 3444443
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.78 E-value=1.9e-05 Score=65.16 Aligned_cols=69 Identities=13% Similarity=0.203 Sum_probs=45.9
Q ss_pred ceeEecCCCCCCCCCCCCCcccCC-------cEE-EeeecCccccccccccccc--cccccceEEecc-eeeccCchhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSD-------SVI-VVYFSRSGRKLKDFPNSGG--KYDLSDSVIVVY-FNITYPGLSMA 100 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsd-------tlr-lDL~S~N~~rl~elP~~I~--~F~~LksL~~~~-~l~~~P~~~g~ 100 (109)
-.|.|+++++.++|... +.... .++ +|+ |.| +|+++|..++ .+..|+.|++++ .+..+|..++.
T Consensus 460 ~~L~Ls~N~l~~i~~~~--~~~~~~~~~~l~~L~~L~L-s~N--~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~ 534 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNS--LKDENENFKNTYLLTSIDL-RFN--KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN 534 (636)
T ss_dssp SEEECCSSCCSBCCSSS--SEETTEECTTGGGCCEEEC-CSS--CCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGG
T ss_pred CEEECCCCCCCCcCHHH--hccccccccccCCccEEEC-cCC--cCCccChhhhhccCCCcCEEECCCCCCCCcChhhhc
Confidence 46777777777777765 22221 344 777 777 7777777776 777777777777 66667777766
Q ss_pred hhhhh
Q psy18121 101 IRKAQ 105 (109)
Q Consensus 101 l~K~~ 105 (109)
+.+-+
T Consensus 535 l~~L~ 539 (636)
T 4eco_A 535 SSTLK 539 (636)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 65444
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.78 E-value=2.5e-05 Score=56.07 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=35.2
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccc-ccccccccccceEEecc-eeeccCch
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDF-PNSGGKYDLSDSVIVVY-FNITYPGL 97 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~el-P~~I~~F~~LksL~~~~-~l~~~P~~ 97 (109)
-+|.|++++++++|...- ..+..-..+|| +.| +|+.+ |..++.+..|+.|++++ .+..+|..
T Consensus 35 ~~L~l~~n~i~~i~~~~~-~~l~~L~~L~L-s~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 35 TEIRLEQNTIKVIPPGAF-SPYKKLRRIDL-SNN--QISELAPDAFQGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp CEEECCSSCCCEECTTSS-TTCTTCCEEEC-CSS--CCCEECTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CEEECCCCcCCCcCHhHh-hCCCCCCEEEC-CCC--cCCCcCHHHhhCCcCCCEEECCCCcCCccCHh
Confidence 355666666666655320 11332222666 666 66666 44566677777777776 66666654
No 21
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.78 E-value=8.9e-06 Score=60.77 Aligned_cols=67 Identities=10% Similarity=-0.128 Sum_probs=47.1
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKA 104 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~ 104 (109)
-+|.|+++++.++|.... +..-..+|+ |.| +++.+|+.++.+..|+.|++++ .+.++|+.++.+.+-
T Consensus 172 ~~L~L~~N~l~~~~~~~~---l~~L~~L~L-s~N--~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L 239 (317)
T 3o53_A 172 EHLNLQYNFIYDVKGQVV---FAKLKTLDL-SSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (317)
T ss_dssp CEEECTTSCCCEEECCCC---CTTCCEEEC-CSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred CEEECCCCcCcccccccc---cccCCEEEC-CCC--cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCC
Confidence 567777777777765541 333233888 777 8888888888888888888888 777788776655443
No 22
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.78 E-value=2e-05 Score=56.56 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=31.1
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccc-cccccccccceEEecc-eeecc-Cchhhhhh
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFP-NSGGKYDLSDSVIVVY-FNITY-PGLSMAIR 102 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP-~~I~~F~~LksL~~~~-~l~~~-P~~~g~l~ 102 (109)
+|.|+++++..+|...- ..+..-..+|| |.| +|+.+| ..++.+..|+.|++++ .+..+ |+.++.+.
T Consensus 85 ~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L-s~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 85 EILLTSNRLENVQHKMF-KGLESLKTLML-RSN--RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153 (220)
T ss_dssp EEECCSSCCCCCCGGGG-TTCSSCCEEEC-TTS--CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred EEECCCCccCccCHhHh-cCCcCCCEEEC-CCC--cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence 44555555555554320 11222222555 555 555552 3455555566666655 55544 44444443
No 23
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.77 E-value=2.7e-05 Score=54.35 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=16.4
Q ss_pred EeeecCccccccccccc-cccccccceEEecc-eeeccCc
Q psy18121 59 VVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 59 lDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~ 96 (109)
+|+ +.| +|+.+|+. ++.+..|++|++++ .+..+|.
T Consensus 105 L~L-~~N--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 105 LAL-NTN--QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp EEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EEc-CCC--cCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 444 444 45444443 34445555555544 4444443
No 24
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.77 E-value=2.9e-05 Score=54.99 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=31.9
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
-.|.|+++++.++|...- ..+..-..+|| |.| +|+.+|+ .++.+..|+.|++++ .+..+|.
T Consensus 57 ~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~L-s~N--~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 57 TLIDLSNNRISTLSNQSF-SNMTQLLTLIL-SYN--RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp CEEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CEEECCCCcCCEeCHhHc-cCCCCCCEEEC-CCC--ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 355666666666654320 11332222666 555 5666655 355566666666665 5555554
No 25
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.76 E-value=2.5e-05 Score=51.83 Aligned_cols=66 Identities=9% Similarity=-0.007 Sum_probs=37.6
Q ss_pred ceeEecCCCCC--CCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeec-cCchhhhhhh
Q psy18121 32 GELNLSGRKLK--DFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNIT-YPGLSMAIRK 103 (109)
Q Consensus 32 GvL~Ls~rkLk--eFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~-~P~~~g~l~K 103 (109)
-.|.++++++. ++|.... .+..-..+|+ +.| +++.+ ..++.+..|+.|++++ .+.. +|+.++.+.+
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l-~~n--~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTD--EFEELEFLST-INV--GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCT--TCTTCCEEEC-TTS--CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred eEEEccCCcCChhHHHHHHh--hcCCCcEEEC-cCC--CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 45677777776 6666542 2433333666 655 66666 5566666666666666 4444 5555444443
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.76 E-value=1.6e-05 Score=62.01 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=26.7
Q ss_pred ceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccC
Q psy18121 32 GELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P 95 (109)
-+|.|++++++++|.. +. .++.-..+|| |.| +|+.+|+. ++.+..|++|++++ .+..+|
T Consensus 55 ~~LdLs~N~i~~l~~~~f~--~l~~L~~L~L-s~N--~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFF--SFPELQVLDL-SRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp CEEECTTSCCCEECTTTTT--TCTTCCEEEC-TTC--CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CEEEeeCCCCCCCCHHHHh--CCCCCCEEEC-CCC--cCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 3455555555555442 21 1322222555 444 55555442 44455555555555 444444
No 27
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.75 E-value=3.1e-05 Score=52.31 Aligned_cols=68 Identities=10% Similarity=-0.035 Sum_probs=43.0
Q ss_pred hceeEecCCCCC--CCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeec-cCchhhhhhhh
Q psy18121 31 SGELNLSGRKLK--DFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNIT-YPGLSMAIRKA 104 (109)
Q Consensus 31 TGvL~Ls~rkLk--eFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~-~P~~~g~l~K~ 104 (109)
--+|.|+++++. ++|..+ ..+..-..+|+ +.| +++.+ ..++.+..|+.|++++ .+.. +|+.++.+.+-
T Consensus 26 L~~L~l~~n~l~~~~i~~~~--~~l~~L~~L~l-~~n--~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLT--AEFVNLEFLSL-INV--GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCC--GGGGGCCEEEE-ESS--CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCEEECCCCCCChhhHHHHH--HhCCCCCEEeC-cCC--CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 356778888887 777765 22433333777 666 67777 6666777777777777 5555 56555544443
No 28
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.75 E-value=1.9e-05 Score=54.30 Aligned_cols=61 Identities=5% Similarity=0.035 Sum_probs=34.8
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCcccccccccc--ccccccccceEEecc-eeeccCch
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPN--SGGKYDLSDSVIVVY-FNITYPGL 97 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~--~I~~F~~LksL~~~~-~l~~~P~~ 97 (109)
-+|.|+++++.++|...- ..+. .++ +|+ +.| +|.++|. .++.+..|++|.+++ .+..+|+.
T Consensus 67 ~~L~Ls~N~l~~~~~~~~-~~l~-~L~~L~L-~~N--~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~ 131 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLD-QALP-DLTELIL-TNN--SLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 131 (176)
T ss_dssp CEEECCSSCCCEECSCHH-HHCT-TCCEEEC-CSC--CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH
T ss_pred CEEECCCCcccccCcchh-hcCC-CCCEEEC-CCC--cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhH
Confidence 356666666666665430 0122 233 666 666 6666665 566666666666666 55566653
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.75 E-value=2.7e-05 Score=58.27 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=36.8
Q ss_pred eeEecCCCCCCCCCCCCCcc-cCCcEEEeeecCcccccccccccc-ccccccceEEecc-eeeccCchhhhh
Q psy18121 33 ELNLSGRKLKDFPNSGGKYD-LSDSVIVVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNITYPGLSMAI 101 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~d-LsdtlrlDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~~~P~~~g~l 101 (109)
.|.|+++++.++|... +. +..-..+|| +.| +|+.+|+.+ ..+..|+.|++++ .+.++|+.+...
T Consensus 128 ~L~L~~N~l~~~~~~~--~~~l~~L~~L~L-~~N--~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~ 194 (290)
T 1p9a_G 128 ELYLKGNELKTLPPGL--LTPTPKLEKLSL-ANN--NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194 (290)
T ss_dssp EEECTTSCCCCCCTTT--TTTCTTCCEEEC-TTS--CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred EEECCCCCCCccChhh--cccccCCCEEEC-CCC--cCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc
Confidence 4556666666666543 21 222222666 666 666666653 5566777777766 666666655443
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.74 E-value=2.3e-05 Score=61.16 Aligned_cols=67 Identities=7% Similarity=-0.098 Sum_probs=53.0
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCc-hhhhhhhhhh
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPG-LSMAIRKAQW 106 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~-~~g~l~K~~~ 106 (109)
+..=++++|.++|..+. +++..+|| |.| +|+++|+ .++.+..|+.|++++ .+..+|+ .++-+++-+.
T Consensus 35 ~~~c~~~~l~~vP~~lp----~~~~~LdL-s~N--~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~ 104 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP----FSTKNLDL-SFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 104 (635)
T ss_dssp EEECTTSCCSSCCSSSC----TTCCEEEC-TTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred EEECCCCCcCccCCCCC----cCCCEEEe-eCC--CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCE
Confidence 45568899999998752 24455999 999 9999997 689999999999999 8888865 4666655443
No 31
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.74 E-value=2.9e-05 Score=54.48 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=31.5
Q ss_pred eeEecCCCCCCCCC-CCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeecc-Cchhhhhh
Q psy18121 33 ELNLSGRKLKDFPN-SGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITY-PGLSMAIR 102 (109)
Q Consensus 33 vL~Ls~rkLkeFP~-~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~-P~~~g~l~ 102 (109)
.|.|+++++..++. .+. .+..-..+|| |.| +|+.+|+. ++.+..|++|++++ .+..+ |+.++.+.
T Consensus 58 ~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L-s~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 58 KLELKRNQLTGIEPNAFE--GASHIQELQL-GEN--KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126 (192)
T ss_dssp EEECCSSCCCCBCTTTTT--TCTTCCEEEC-CSC--CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred EEECCCCCCCCcCHhHcC--CcccCCEEEC-CCC--cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence 45555555555532 221 1332222555 555 56555554 55556666666665 44433 44444443
No 32
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.74 E-value=2e-05 Score=56.59 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=27.0
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccC
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P 95 (109)
+|.|+++++.++|....-..+..-..+|| +.| +|+.+|+ .++.+..|+.|++++ .+..+|
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L-~~N--~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 97 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINF-SNN--KITDIEEGAFEGASGVNEILLTSNRLENVQ 97 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEEC-CSS--CCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEEC-CCC--cCCEECHHHhCCCCCCCEEECCCCccCccC
Confidence 55566666655533210012322222555 444 5555554 344555555555554 444443
No 33
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.74 E-value=4.2e-05 Score=52.27 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=47.4
Q ss_pred hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCch-hhhhhh
Q psy18121 31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL-SMAIRK 103 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~-~g~l~K 103 (109)
-..|.|+++++.++|...- ..+..-..+|+ +.| +|+.+|+. ++.+..|+.|++++ .+..+|.. ++.+.+
T Consensus 30 l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l-~~n--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVF-DKLTQLTKLSL-SQN--QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp CSEEECCSSCCCCCCTTTT-TTCTTCSEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CcEEEeCCCcccEeCHHHh-cCcccccEEEC-CCC--cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence 3578888888888887541 12333333888 777 88888876 47888888888888 77777764 344433
No 34
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.73 E-value=3.5e-05 Score=53.76 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=31.3
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccc-cccccccceEEecc-eeeccCc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~ 96 (109)
-+|.|++++++++|...- ..+. .++ +|+ +.| +|+.+|+. ++.+..|+.|++++ .+..+|.
T Consensus 55 ~~L~l~~n~l~~~~~~~~-~~l~-~L~~L~L-s~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 117 (208)
T 2o6s_A 55 TQLYLGGNKLQSLPNGVF-NKLT-SLTYLNL-STN--QLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117 (208)
T ss_dssp SEEECCSSCCCCCCTTTT-TTCT-TCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cEEECCCCccCccChhhc-CCCC-CcCEEEC-CCC--cCCccCHhHhcCccCCCEEEcCCCcCcccCH
Confidence 345555555555555430 0122 233 666 555 56666654 35666666666665 5555554
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.73 E-value=3.4e-05 Score=57.94 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=45.7
Q ss_pred hhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCcccccccccc-ccccccccceEEecc-eeeccC-chhhhhhh
Q psy18121 30 LSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP-GLSMAIRK 103 (109)
Q Consensus 30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P-~~~g~l~K 103 (109)
..|++.+++++|+++|.... ..++ +|+ +.| +++++|+ .++.+..|++|++++ .+..+| +.++.+.+
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~-----~~L~~L~l-~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLT-----EAVKSLDL-SNN--RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCC-----TTCCEEEC-TTS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCeEeeCCCCCccccccccc-----ccCcEEEC-CCC--cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 45788889999999988652 2344 788 777 7777777 677777777777777 555553 44554444
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.73 E-value=4.1e-05 Score=56.80 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=31.7
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhh
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRK 103 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K 103 (109)
++.++++++.++|.... .....+|+ +.| +++++|+ .++.+..|+.|++++ .+..+ |+.++.+++
T Consensus 35 ~l~~~~~~l~~lp~~~~----~~l~~L~L-~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (330)
T 1xku_A 35 VVQCSDLGLEKVPKDLP----PDTALLDL-QNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101 (330)
T ss_dssp EEECTTSCCCSCCCSCC----TTCCEEEC-CSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred EEEecCCCccccCccCC----CCCeEEEC-CCC--cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCC
Confidence 45555556666655431 11222555 555 5555555 455555555555555 44444 444444443
No 37
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.70 E-value=3.8e-05 Score=55.14 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=34.9
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
-+|.|+++++.++|...- ..+..-..+|| +.| +|+.+|+ .++.+..|+.|++++ .+..+|.
T Consensus 83 ~~L~Ls~N~l~~l~~~~f-~~l~~L~~L~L-~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLF-EGLFSLQLLLL-NAN--KINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp CEEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CEEECCCCcCCccCHhHc-cCCCCCCEEEC-CCC--CCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 356666666666666530 11332222666 666 6666644 456666777777766 6666654
No 38
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.68 E-value=2.1e-05 Score=53.13 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=11.9
Q ss_pred cccccc--cccccccccceEEecc-eeeccC
Q psy18121 68 KLKDFP--NSGGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 68 rl~elP--~~I~~F~~LksL~~~~-~l~~~P 95 (109)
+|+.+| ..++.+..|++|++++ .+..+|
T Consensus 106 ~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 106 KLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp SCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred ccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 444443 3344444444444444 333443
No 39
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.67 E-value=2.3e-05 Score=58.56 Aligned_cols=62 Identities=10% Similarity=-0.037 Sum_probs=35.5
Q ss_pred ceeEecC-CCCCCCCCC-CCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCchh
Q psy18121 32 GELNLSG-RKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGLS 98 (109)
Q Consensus 32 GvL~Ls~-rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~~ 98 (109)
-.|.|++ ++|..+|.. + ..|..-..+|| |.| +|+.+|+. ++.+..|+.|++++ .+..+|..+
T Consensus 34 ~~L~l~~~n~l~~~~~~~~--~~l~~L~~L~l-~~N--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDL--RGLGELRNLTI-VKS--GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp SEEECCSCSSCCEECGGGS--CSCCCCSEEEC-CSS--CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred eEEEccCCCCCCCcChhHh--ccccCCCEEEC-CCC--ccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence 3566664 666666643 3 12433233666 666 66666653 46666666666666 666666543
No 40
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.67 E-value=4e-05 Score=57.22 Aligned_cols=68 Identities=6% Similarity=-0.113 Sum_probs=54.6
Q ss_pred eeEecCC-CCCCCCCCCCCcccCCcEEEeeecC-cccccccccc-ccccccccceEEecc-eeeccCc-hhhhhhhhhh
Q psy18121 33 ELNLSGR-KLKDFPNSGGKYDLSDSVIVVYFSR-SGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPG-LSMAIRKAQW 106 (109)
Q Consensus 33 vL~Ls~r-kLkeFP~~~~~~dLsdtlrlDL~S~-N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~-~~g~l~K~~~ 106 (109)
.+.++++ +|.++|. +. .++....+|| |. | +|+.+|+ .++.+..|+.|++++ .+..+|. .++.+.+-+.
T Consensus 12 ~v~~~~~n~l~~ip~-l~--~~~~L~~L~l-~~~n--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LP--GAENLTELYI-ENQQ--HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp CEECCSSCCCTTTTT-SC--SCSCCSEEEC-CSCS--SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred EEEcCCCCCCCccCC-CC--CCCCeeEEEc-cCCC--CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence 5688999 9999999 74 3665566999 85 8 9999996 689999999999999 8888765 5566665443
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.64 E-value=3.4e-05 Score=60.38 Aligned_cols=67 Identities=9% Similarity=-0.060 Sum_probs=42.6
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRKAQ 105 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K~~ 105 (109)
.++.+++++|+++|..+. .....+|+ |.| +++.+|+ .++.+..|+.|++++ .+..+ |+.++-+++-+
T Consensus 3 ~~l~ls~n~l~~ip~~~~----~~L~~L~L-s~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS----QKTTILNI-SQN--YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSCCSSCCCSCC----TTCSEEEC-CSS--CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred ceEecCCCCccccccccc----ccccEEEC-CCC--cccccChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence 567777777777776552 22233777 766 6777764 567777777777777 55555 55666555443
No 42
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.62 E-value=1.6e-05 Score=52.75 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=16.8
Q ss_pred EeeecCccccccccc--cccccccccceEEecc-eeeccCc
Q psy18121 59 VVYFSRSGRKLKDFP--NSGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 59 lDL~S~N~~rl~elP--~~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
+|+ |.| +++++| ..++.+..|++|++++ .+..+|.
T Consensus 93 L~l-s~N--~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 93 LNL-SGN--KIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp EEC-TTS--CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred EEC-CCC--cCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 555 444 455443 4445555555555554 4444443
No 43
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.59 E-value=2.7e-05 Score=58.12 Aligned_cols=69 Identities=13% Similarity=-0.075 Sum_probs=56.7
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eee--ccCchhhhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNI--TYPGLSMAIRKAQ 105 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~--~~P~~~g~l~K~~ 105 (109)
-+|.|+++++.++|..+ ..+..-..+|+ +.| +|+++|..++.+..|+.|++++ .+. .+|+.++.+.+-+
T Consensus 194 ~~L~Ls~N~l~~l~~~~--~~l~~L~~L~L-~~N--~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 194 KTLDLSSNKLAFMGPEF--QSAAGVTWISL-RNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp CEEECCSSCCCEECGGG--GGGTTCSEEEC-TTS--CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred CEEECCCCcCCcchhhh--cccCcccEEEC-cCC--cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 57999999999999987 44665555999 999 9999999999999999999999 555 6777776665443
No 44
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.59 E-value=8.5e-05 Score=55.52 Aligned_cols=59 Identities=20% Similarity=0.185 Sum_probs=29.3
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccCc
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
+|.|+++++.++|..+ ..+..-..+|+ +.| +|+.+|+ .++.+..|+.|++++ .+..+|.
T Consensus 81 ~L~Ls~N~l~~l~~~~--~~l~~L~~L~l-~~N--~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLG--QTLPALTVLDV-SFN--RLTSLPLGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp EEECCSSCCSSCCCCT--TTCTTCCEEEC-CSS--CCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred EEECCCCcCCcCchhh--ccCCCCCEEEC-CCC--cCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence 4555555555555544 22333223555 555 5555553 345555555555555 4444443
No 45
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.59 E-value=7.9e-05 Score=54.24 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=30.9
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccccc-ccccccceEEecc-eeeccCc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSG-GKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I-~~F~~LksL~~~~-~l~~~P~ 96 (109)
..|.|+++++.++|...- ..+..-..+|+ +.| +++++|+.+ +.+..|+.|++++ .+..+|.
T Consensus 40 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l-~~n--~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 102 (270)
T 2o6q_A 40 KKLDLQSNKLSSLPSKAF-HRLTKLRLLYL-NDN--KLQTLPAGIFKELKNLETLWVTDNKLQALPI 102 (270)
T ss_dssp SEEECCSSCCSCCCTTSS-SSCTTCCEEEC-CSS--CCSCCCTTTTSSCTTCCEEECCSSCCCCCCT
T ss_pred CEEECcCCCCCeeCHHHh-cCCCCCCEEEC-CCC--ccCeeChhhhcCCCCCCEEECCCCcCCcCCH
Confidence 345555555555554220 11332222666 555 566666543 5566666666665 5555553
No 46
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.58 E-value=6.9e-05 Score=57.21 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=25.6
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccccc-c-cccccceEEecc-eeeccC
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSG-G-KYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I-~-~F~~LksL~~~~-~l~~~P 95 (109)
++.+++++|+++|..+.. ....+|| |.| +|+++|+.+ . .+..|+.|++++ .+..+|
T Consensus 22 ~l~c~~~~l~~iP~~~~~----~l~~L~L-s~N--~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~ 80 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLPS----YTALLDL-SHN--NLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80 (361)
T ss_dssp EEECCSSCCSSCCSSCCT----TCSEEEC-CSS--CCCEECTTSSSSCCTTCCEEECCSSCCCEEC
T ss_pred EEEeCCCCcCccCccCCC----CCCEEEC-CCC--CCCccChhhhhhcccccCEEECCCCcCCccC
Confidence 455566666666654311 1122555 444 455554432 2 444444444444 444433
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.57 E-value=7.1e-05 Score=55.73 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=35.9
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhhh
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRKA 104 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K~ 104 (109)
++.+++++++++|.... .....+|+ +.| +++++|+ .++.+..|+.|++++ .+..+ |+.++.+.+-
T Consensus 37 ~l~~~~~~l~~ip~~~~----~~l~~L~l-~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 37 VVQCSDLGLKAVPKEIS----PDTTLLDL-QNN--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp EEECCSSCCSSCCSCCC----TTCCEEEC-CSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred EEECCCCCccccCCCCC----CCCeEEEC-CCC--cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 46666666776666541 12222666 555 6666644 466666666666665 44444 4455544443
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.57 E-value=7.2e-05 Score=59.72 Aligned_cols=68 Identities=7% Similarity=0.021 Sum_probs=51.6
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRKAQW 106 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K~~~ 106 (109)
.++.+++++|+++|..+. .....+|+ |.| +++++|+ .++.+..|+.|++++ .+..+ |+.++.+++-+.
T Consensus 34 ~~l~ls~~~L~~ip~~~~----~~L~~L~L-s~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP----PRTKALSL-SQN--SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp CEEECTTSCCCSCCTTSC----TTCCEEEC-CSS--CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cEEEcCCCCCccCCCCCC----CCcCEEEC-CCC--CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 689999999999998652 33334899 888 8888885 788888999999988 77766 666766655443
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=6.6e-05 Score=66.31 Aligned_cols=71 Identities=13% Similarity=0.169 Sum_probs=54.4
Q ss_pred hceeEecCCCCCCCCCCCCCcccCC-------cEE-EeeecCccccccccccccc--cccccceEEecc-eeeccCchhh
Q psy18121 31 SGELNLSGRKLKDFPNSGGKYDLSD-------SVI-VVYFSRSGRKLKDFPNSGG--KYDLSDSVIVVY-FNITYPGLSM 99 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~~~~~~dLsd-------tlr-lDL~S~N~~rl~elP~~I~--~F~~LksL~~~~-~l~~~P~~~g 99 (109)
=-.|.|+++++.++|... +.... .++ +|| |.| +|+++|..++ .+..|+.|++++ .+..+|..++
T Consensus 699 L~~L~Ls~N~L~~ip~~~--~~~~~~~l~nl~~L~~L~L-s~N--~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~ 773 (876)
T 4ecn_A 699 ISTIILSNNLMTSIPENS--LKPKDGNYKNTYLLTTIDL-RFN--KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773 (876)
T ss_dssp CSEEECCSCCCSCCCTTS--SSCTTSCCTTGGGCCEEEC-CSS--CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG
T ss_pred CCEEECCCCcCCccChHH--hccccccccccCCccEEEC-CCC--CCccchHHhhhccCCCcCEEEeCCCCCCccchhhh
Confidence 357888888888888876 22321 455 888 888 8889998887 888999999988 7888888888
Q ss_pred hhhhhhh
Q psy18121 100 AIRKAQW 106 (109)
Q Consensus 100 ~l~K~~~ 106 (109)
.+.+-+.
T Consensus 774 ~L~~L~~ 780 (876)
T 4ecn_A 774 NSSQLKA 780 (876)
T ss_dssp GCTTCCE
T ss_pred cCCCCCE
Confidence 7765543
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.57 E-value=2.7e-05 Score=62.56 Aligned_cols=67 Identities=10% Similarity=-0.126 Sum_probs=49.1
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKA 104 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~ 104 (109)
-.|.|+++++..+|... .++.-..+|| |.| +|+.+|+.++.+..|+.|++++ .+..+|+.++.+.+-
T Consensus 172 ~~L~Ls~N~l~~~~~~~---~l~~L~~L~L-s~N--~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L 239 (487)
T 3oja_A 172 EHLNLQYNFIYDVKGQV---VFAKLKTLDL-SSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (487)
T ss_dssp CEEECTTSCCCEEECCC---CCTTCCEEEC-CSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred cEEecCCCccccccccc---cCCCCCEEEC-CCC--CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCC
Confidence 46777777777776544 1333333888 888 8888888888888888888888 888888877655443
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.53 E-value=9.3e-05 Score=57.92 Aligned_cols=65 Identities=12% Similarity=-0.013 Sum_probs=33.2
Q ss_pred hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccc-cccccccccceEEecc-eeeccC-chhhhhh
Q psy18121 31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFP-NSGGKYDLSDSVIVVY-FNITYP-GLSMAIR 102 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP-~~I~~F~~LksL~~~~-~l~~~P-~~~g~l~ 102 (109)
.|++.++++++.++|..+. .....+|+ |.| +++.+| ..++.+..|+.|++++ .+..+| +.++.+.
T Consensus 7 ~~~c~~~~~~l~~ip~~~~----~~L~~L~L-s~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 74 (549)
T 2z81_A 7 SGVCDGRSRSFTSIPSGLT----AAMKSLDL-SFN--KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74 (549)
T ss_dssp TSEEECTTSCCSSCCSCCC----TTCCEEEC-CSS--CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CceEECCCCccccccccCC----CCccEEEC-cCC--ccCccChhhhhcCCcccEEECCCCCcCccChhhccccc
Confidence 3556666666666666441 12222666 555 555553 3455555555555555 444443 3344433
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.52 E-value=5.4e-05 Score=56.35 Aligned_cols=41 Identities=7% Similarity=-0.066 Sum_probs=20.0
Q ss_pred EeeecCcccccccccc-ccccccccceEEecc-eeeccCchhhhhh
Q psy18121 59 VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPGLSMAIR 102 (109)
Q Consensus 59 lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~~~g~l~ 102 (109)
+|+ +.| +++.+|+ .++.+..|+.|++++ .+..+|+.++.+.
T Consensus 222 L~L-~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~ 264 (332)
T 2ft3_A 222 LGL-GHN--QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK 264 (332)
T ss_dssp CBC-CSS--CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCT
T ss_pred EEC-CCC--cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCc
Confidence 455 444 4555544 344555555555554 4445555444433
No 53
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.52 E-value=2e-05 Score=55.15 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=27.9
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P 95 (109)
-+|.|+++++.++| .+ ..+..-..+|+ +.| +++++|..++.+..|+.|++++ .+..+|
T Consensus 51 ~~L~ls~n~l~~l~-~~--~~l~~L~~L~l-~~n--~l~~l~~~~~~~~~L~~L~L~~N~l~~l~ 109 (198)
T 1ds9_A 51 KHLALSTNNIEKIS-SL--SGMENLRILSL-GRN--LIKKIENLDAVADTLEELWISYNQIASLS 109 (198)
T ss_dssp SEEECSEEEESCCC-CH--HHHTTCCEEEE-EEE--EECSCSSHHHHHHHCSEEEEEEEECCCHH
T ss_pred CEEECCCCCCcccc-cc--ccCCCCCEEEC-CCC--CcccccchhhcCCcCCEEECcCCcCCcCC
Confidence 44555555555555 32 22322222555 444 5555555555555555555555 444444
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.50 E-value=9.5e-05 Score=54.81 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=51.2
Q ss_pred hceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccc-ccccccccccceEEecc-eeeccCchhh
Q psy18121 31 SGELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDF-PNSGGKYDLSDSVIVVY-FNITYPGLSM 99 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~el-P~~I~~F~~LksL~~~~-~l~~~P~~~g 99 (109)
..+|.|+++++.++|.. +. .+..-..+|+ +.| +++.+ |..++.+..|++|++++ .+..+|..+.
T Consensus 54 l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 120 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFK--NLKNLHTLIL-INN--KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP 120 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTT--TCTTCCEEEC-CSS--CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC
T ss_pred CeEEECCCCcCCEeChhhhc--cCCCCCEEEC-CCC--cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc
Confidence 45799999999999984 42 3554444999 888 89998 67899999999999998 8888887654
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.50 E-value=4.6e-05 Score=57.20 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=6.8
Q ss_pred eeEecCCCCCCCCC
Q psy18121 33 ELNLSGRKLKDFPN 46 (109)
Q Consensus 33 vL~Ls~rkLkeFP~ 46 (109)
+|.|+++++.++|.
T Consensus 56 ~L~l~~n~i~~~~~ 69 (353)
T 2z80_A 56 SLDLSNNRITYISN 69 (353)
T ss_dssp EEECTTSCCCEECT
T ss_pred EEECCCCcCcccCH
Confidence 44445555544444
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.49 E-value=0.00011 Score=53.44 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=29.5
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCc
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~ 96 (109)
.|.|+++++.++|...- ..+..-..+|+ +.| +++.+|+. +..+..|++|++++ .+..+|.
T Consensus 137 ~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVF-DKLTSLKELRL-YNN--QLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp EEECCSSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EEECCCCcCCccCHhHc-cCCcccceeEe-cCC--cCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 45555555555554320 11222222555 555 56655553 45556666666655 5555554
No 57
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.49 E-value=9.7e-05 Score=61.97 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=45.6
Q ss_pred eeEecCCCCC-CCCCCCCCcccCCcEEEeeecCcccccc-ccccccccccccceEEecc-eee-ccCchhhhhhhh
Q psy18121 33 ELNLSGRKLK-DFPNSGGKYDLSDSVIVVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-FNI-TYPGLSMAIRKA 104 (109)
Q Consensus 33 vL~Ls~rkLk-eFP~~~~~~dLsdtlrlDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~l~-~~P~~~g~l~K~ 104 (109)
.|.|+++++. ++|.++ ..+..-..+|| |.| +|+ .+|..++.+..|++|++++ .+. .+|+.++.++.-
T Consensus 636 ~LdLs~N~l~g~ip~~l--~~l~~L~~L~L-s~N--~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEI--GSMPYLFILNL-GHN--DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp EEECCSSCCBSCCCGGG--GGCTTCCEEEC-CSS--CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred EEECcCCcccccCCHHH--hccccCCEEeC-cCC--ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 5777777777 666666 33554444777 777 777 7777777777777777777 444 677777666543
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.49 E-value=0.00011 Score=54.97 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=39.9
Q ss_pred eeEecCCCCC---CCCCCCCCcccCCcEEEeeecC-cccccc-ccccccccccccceEEecc-eee-ccCchhhhhhhhh
Q psy18121 33 ELNLSGRKLK---DFPNSGGKYDLSDSVIVVYFSR-SGRKLK-DFPNSGGKYDLSDSVIVVY-FNI-TYPGLSMAIRKAQ 105 (109)
Q Consensus 33 vL~Ls~rkLk---eFP~~~~~~dLsdtlrlDL~S~-N~~rl~-elP~~I~~F~~LksL~~~~-~l~-~~P~~~g~l~K~~ 105 (109)
+|.|+++++. ++|..+ ..+..-..+|+ +. | .+. .+|..++++..|+.|++++ .+. .+|+.++.+++-+
T Consensus 54 ~L~L~~~~l~~~~~~~~~l--~~l~~L~~L~L-~~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 54 NLDLSGLNLPKPYPIPSSL--ANLPYLNFLYI-GGIN--NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp EEEEECCCCSSCEECCGGG--GGCTTCSEEEE-EEET--TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred EEECCCCCccCCcccChhH--hCCCCCCeeeC-CCCC--cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 4667777776 466665 33444333666 52 4 454 5666666666666666666 443 5666665555443
No 59
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.49 E-value=0.00013 Score=55.31 Aligned_cols=58 Identities=7% Similarity=0.044 Sum_probs=44.9
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-ee-eccCc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FN-ITYPG 96 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l-~~~P~ 96 (109)
.++..++++|.++|..+ ..++..+|| +.| +|++||+. ++.+..|+.|++++ .+ ..+|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~L-s~N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~ 72 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL----PRNAIELRF-VLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72 (350)
T ss_dssp TEEEEESTTCCSCCTTC----CTTCSEEEE-ESC--CCSEECTTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred CEEEecCCCCCccCcCc----CCCCCEEEc-cCC--cCCCcCHHHHcCCCCCCEEECcCCCCCCccCh
Confidence 45677889999999876 234556999 888 89999974 68899999999988 53 55664
No 60
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.47 E-value=0.00012 Score=53.43 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=25.5
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccC
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P 95 (109)
+|.|+++++.++|...- ..+..-..+|+ +.| +++.+|+. ++.+..|+.|++++ .+..+|
T Consensus 89 ~L~L~~n~l~~~~~~~~-~~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 149 (272)
T 3rfs_A 89 YLILTGNQLQSLPNGVF-DKLTNLKELVL-VEN--QLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149 (272)
T ss_dssp EEECTTSCCCCCCTTTT-TTCTTCCEEEC-TTS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EEECCCCccCccChhHh-cCCcCCCEEEC-CCC--cCCccCHHHhccCCCCCEEECCCCccCccC
Confidence 45555555555554320 01222112555 444 45554443 34444555555544 444443
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.46 E-value=0.00011 Score=53.38 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=8.9
Q ss_pred cccccccc-cccccccceEEecc
Q psy18121 68 KLKDFPNS-GGKYDLSDSVIVVY 89 (109)
Q Consensus 68 rl~elP~~-I~~F~~LksL~~~~ 89 (109)
+|+.+|+. ++.+..|+.|++++
T Consensus 164 ~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 164 RISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCS
T ss_pred cccccCHHHhcCccccCEEECCC
Confidence 44444432 33444444444444
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.46 E-value=6.7e-05 Score=56.20 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=29.0
Q ss_pred eeEecCCCCC-CCCCCCCCcccCCcEEEeeecCcccccc-ccccccccccccceEEecc-eee-ccCchhhhh
Q psy18121 33 ELNLSGRKLK-DFPNSGGKYDLSDSVIVVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-FNI-TYPGLSMAI 101 (109)
Q Consensus 33 vL~Ls~rkLk-eFP~~~~~~dLsdtlrlDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~l~-~~P~~~g~l 101 (109)
.|.|+++++. .+|..+ ..+..-..+|+ +.| +|+ .+|..++.+..|+.|++++ .+. .+|+.++.+
T Consensus 105 ~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L-s~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 105 YLYITHTNVSGAIPDFL--SQIKTLVTLDF-SYN--ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp EEEEEEECCEEECCGGG--GGCTTCCEEEC-CSS--EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred EEECcCCeeCCcCCHHH--hCCCCCCEEeC-CCC--ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence 4444444444 444443 22332222555 444 454 4444555555555555555 333 445444443
No 63
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.46 E-value=1.2e-05 Score=56.33 Aligned_cols=62 Identities=8% Similarity=0.001 Sum_probs=44.5
Q ss_pred CCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhhhc
Q psy18121 40 KLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQWL 107 (109)
Q Consensus 40 kLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~~~ 107 (109)
.++++|..+ ..+..-..+|+ |.| +++.+| .++.+..|+.|++++ .+..+|+.++.+.+-++|
T Consensus 36 ~l~~l~~~~--~~l~~L~~L~l-s~n--~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 36 PIEKMDATL--STLKACKHLAL-STN--NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL 98 (198)
T ss_dssp TCCCCHHHH--HHTTTCSEEEC-SEE--EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred cHhhhhHHH--hcCCCCCEEEC-CCC--CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence 444555454 33554445888 877 888888 888888999999988 888888887776665543
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.46 E-value=0.0001 Score=57.62 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=33.4
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeec--cCchhhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNIT--YPGLSMAIRKA 104 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~--~P~~~g~l~K~ 104 (109)
-+|.|+++++.++|...- ..+..-..+|+ +.| +++.+|. .++.+..|++|++++ .+.. +|+.++.+++-
T Consensus 79 ~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L-~~n--~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 79 STLILTGNPIQSLALGAF-SGLSSLQKLVA-VET--NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp CEEECTTCCCCEECTTTT-TTCTTCCEEEC-TTS--CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred CEEeCcCCcCCccCHhhh-cCccccccccc-ccc--ccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence 345555555555553220 11222122555 555 5555554 355666666666665 3333 45555555443
No 65
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.45 E-value=9.1e-05 Score=56.16 Aligned_cols=62 Identities=10% Similarity=-0.008 Sum_probs=28.2
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCch
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL 97 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~ 97 (109)
-+|.|+++++.++|...- ..+..-..+|+ +.| +++.+|+. ++.+..|+.|++++ .+..+|..
T Consensus 72 ~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 135 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAF-AYAHTIQKLYM-GFN--AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135 (390)
T ss_dssp SEEECTTSCCCEECTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cEEECCCCcccccChhhc-cCCCCcCEEEC-CCC--CCCcCCHHHhcCCCCCCEEECCCCccCcCCHH
Confidence 455555555555554220 11222122555 444 55555443 45555555555555 44445443
No 66
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.45 E-value=0.00011 Score=60.54 Aligned_cols=72 Identities=13% Similarity=-0.005 Sum_probs=52.7
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEec------c--eeeccCchhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVV------Y--FNITYPGLSMAIRK 103 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~------~--~l~~~P~~~g~l~K 103 (109)
-.|.|+++++.++|.......+..-..+|| |.| +|+.+|..++.+..|+.|+++ + ....+|+.++.+.+
T Consensus 491 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~L-s~N--~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDL-SYN--SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp CEEECCSSCCCBCCGGGSTTTCTTCCEEEC-CSS--CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred cEEECcCCcCCccChhhhhccCCCcCEEEC-CCC--CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 468888999998888762114555445888 888 888888888888888888884 2 35678888777665
Q ss_pred hhh
Q psy18121 104 AQW 106 (109)
Q Consensus 104 ~~~ 106 (109)
-+.
T Consensus 568 L~~ 570 (636)
T 4eco_A 568 LTQ 570 (636)
T ss_dssp CCE
T ss_pred CCE
Confidence 443
No 67
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.44 E-value=0.00011 Score=54.51 Aligned_cols=62 Identities=16% Similarity=0.044 Sum_probs=48.0
Q ss_pred hhceeEecCCCCCCC-CCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121 30 LSGELNLSGRKLKDF-PNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 30 kTGvL~Ls~rkLkeF-P~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
.=-+|.|+++++.++ |.....+.-...++ +|+ |.| +|+++|..+. ..|+.|++++ .+..+|.
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~L-s~N--~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNL-SFA--GLEQVPKGLP--AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEEC-CSS--CCCSCCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEEC-CCC--CCCchhhhhc--CCCCEEECCCCcCCCCch
Confidence 336789999999998 77764322125666 999 888 8999999885 7999999999 8887776
No 68
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.44 E-value=9.5e-05 Score=56.44 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=26.6
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccc-cccccccccceEEecc-eeeccCch
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFP-NSGGKYDLSDSVIVVY-FNITYPGL 97 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP-~~I~~F~~LksL~~~~-~l~~~P~~ 97 (109)
.|.|++++|..+|...- ..+..-..+|| +.| +|..++ ..++.+..|+.|++++ .+..+|..
T Consensus 92 ~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L-~~N--~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLF-SDLQALEVLLL-YNN--HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp EEECCSSCCCEECTTTT-TTCTTCCEEEC-CSS--CCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred EEECCCCcCCcCCHHHh-CCCcCCCEEEC-CCC--cccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 44555555555544320 01222122555 444 455442 2344555555555555 45455443
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.43 E-value=0.00013 Score=52.78 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=9.2
Q ss_pred ccccccc-ccccccccceEEecc
Q psy18121 68 KLKDFPN-SGGKYDLSDSVIVVY 89 (109)
Q Consensus 68 rl~elP~-~I~~F~~LksL~~~~ 89 (109)
++..+|+ .++.+..|++|++++
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~ 133 (276)
T 2z62_A 111 NLASLENFPIGHLKTLKELNVAH 133 (276)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCS
T ss_pred CccccCchhcccCCCCCEEECcC
Confidence 3333333 244444444444444
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.42 E-value=0.00016 Score=52.86 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=25.2
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccC
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P 95 (109)
+|.|+++++.++|...- ..+..-..+|+ +.| +++.+|+. ++.+..|+.|++++ .+..+|
T Consensus 113 ~L~L~~n~l~~~~~~~~-~~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVF-DKLTNLTYLNL-AHN--QLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp EEECTTSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EEECCCCcCCccCHHHh-ccCCCCCEEEC-CCC--ccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 45555555555554320 11222122555 444 45554443 24444555555544 344443
No 71
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.42 E-value=0.00015 Score=57.69 Aligned_cols=64 Identities=9% Similarity=-0.024 Sum_probs=33.3
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhh
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRK 103 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K 103 (109)
.+..++++|+++|..+.. .+..+|+ |.| +++.+|+ .++.+..|++|++++ .+..+ |+.++-+++
T Consensus 16 ~~~c~~~~l~~iP~~l~~----~l~~L~L-s~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 82 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLPN----STECLEF-SFN--VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82 (606)
T ss_dssp EEECTTSCCSSCCTTSCT----TCCEEEC-TTC--CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred eEECCCCCcccCcCCCCC----cCcEEEc-cCC--ccCcCChhHhccCccceEEECCCCccceeChhhccCccc
Confidence 455666666666654411 2222666 555 5666633 456666666666665 44333 444444443
No 72
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.42 E-value=0.00011 Score=55.72 Aligned_cols=68 Identities=10% Similarity=-0.028 Sum_probs=41.7
Q ss_pred ceeEecCCCCCCCCC-CCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhh
Q psy18121 32 GELNLSGRKLKDFPN-SGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKA 104 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~-~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~ 104 (109)
-.|.|+++++.+++. .+. .+..-..+|+ +.| +++.+|..++.+..|+.|++++ .+..+|..++.+.+-
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L-~~n--~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L 320 (390)
T 3o6n_A 251 VEVDLSYNELEKIMYHPFV--KMQRLERLYI-SNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 320 (390)
T ss_dssp SEEECCSSCCCEEESGGGT--TCSSCCEEEC-CSS--CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTC
T ss_pred cEEECCCCcCCCcChhHcc--ccccCCEEEC-CCC--cCcccCcccCCCCCCCEEECCCCcceecCccccccCcC
Confidence 356666666666633 332 2333233777 666 7777777777777777777777 666777666655443
No 73
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.41 E-value=0.00014 Score=53.63 Aligned_cols=62 Identities=8% Similarity=0.033 Sum_probs=46.3
Q ss_pred hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhh
Q psy18121 31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSM 99 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g 99 (109)
=-+|.|++++++++| .+ ..+..-..+|+ +.| +++++|+ ++.+..|+.|++++ .+..+|+..+
T Consensus 43 L~~L~l~~n~i~~l~-~l--~~l~~L~~L~L-~~N--~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~ 105 (263)
T 1xeu_A 43 VQNFNGDNSNIQSLA-GM--QFFTNLKELHL-SHN--QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS 105 (263)
T ss_dssp CSEEECTTSCCCCCT-TG--GGCTTCCEEEC-CSS--CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC
T ss_pred CcEEECcCCCcccch-HH--hhCCCCCEEEC-CCC--ccCCChh-hccCCCCCEEECCCCccCCcCcccc
Confidence 346888999999888 33 23444344888 888 8888888 88888888888888 7777776543
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.41 E-value=0.00015 Score=52.69 Aligned_cols=67 Identities=10% Similarity=0.023 Sum_probs=40.4
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeeccCch-hhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL-SMAIR 102 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~-~g~l~ 102 (109)
-+|.|+++++.++|...- ..+..-..+|+ +.| +++.+|+. ++.+..|+.|++++ .+..+|.. ++.+.
T Consensus 108 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l-~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLF-RGLAALQYLYL-QDN--ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp CEEECTTSCCCCCCTTTT-TTCTTCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CEEECCCCcCCEECHhHh-hCCcCCCEEEC-CCC--cccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 456677777777654320 12333233777 766 77777764 67777777777777 66666653 44333
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.39 E-value=0.00012 Score=58.49 Aligned_cols=40 Identities=10% Similarity=0.012 Sum_probs=17.8
Q ss_pred EeeecCccccccccccccccccccceEEecc-eeeccC--chhhhhhh
Q psy18121 59 VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP--GLSMAIRK 103 (109)
Q Consensus 59 lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P--~~~g~l~K 103 (109)
+|| |.| +|+++|.. .+..|++|++++ .+..+| +.++-+++
T Consensus 105 L~L-s~N--~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 105 LDV-SHN--RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp EEC-TTS--CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred EEC-CCC--cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCc
Confidence 444 444 44444444 444444444444 333332 44444443
No 76
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.37 E-value=0.00018 Score=57.21 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=38.3
Q ss_pred ceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRKA 104 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K~ 104 (109)
-+|.|++++++++|.. + ..+..-..+|+ |.| +++.+|+ .++.+..|++|++++ .+..+ |+.++-+.+-
T Consensus 35 ~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L-s~n--~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSF--SNFSELQWLDL-SRC--EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp CEEECTTSCCCEECTTTT--TTCTTCCEEEC-TTC--CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CEEECCCCCcCEeChhhc--cCCccCcEEeC-CCC--cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 4556666666666552 2 12333333666 666 6666643 466666777777766 55555 5666555443
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.36 E-value=0.0002 Score=53.33 Aligned_cols=69 Identities=16% Similarity=0.051 Sum_probs=49.7
Q ss_pred hhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhh
Q psy18121 30 LSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQ 105 (109)
Q Consensus 30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~ 105 (109)
.=-+|.|+++++.+.+....-..+ ..++ +|+ |.| +|+++|..+. ..|+.|++++ .+..+|+ ++.+.+-+
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L-s~N--~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~ 299 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWP-SQLNSLNL-SFT--GLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVG 299 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCC-TTCCEEEC-TTS--CCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEE
T ss_pred CCCEEECCCCcCCcccchhhhhhc-CCCCEEEC-CCC--ccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCC
Confidence 345788999999887632111123 3455 999 888 8999999887 8899999999 8888887 66555433
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.35 E-value=0.00024 Score=52.81 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=44.1
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY 89 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~ 89 (109)
-+|.|+++++.++|..+. ..++ +|+ |.| +|+.+|. ++.+..|+.|++++
T Consensus 256 ~~L~Ls~N~l~~ip~~~~-----~~L~~L~L-s~N--~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 256 NSLNLSFTGLKQVPKGLP-----AKLSVLDL-SYN--RLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp CEEECTTSCCSSCCSSCC-----SEEEEEEC-CSS--CCCSCCC-TTTSCEEEEEECTT
T ss_pred CEEECCCCccChhhhhcc-----CCceEEEC-CCC--CCCCChh-HhhCCCCCEEeccC
Confidence 579999999999999872 5677 999 999 9999988 99999999999998
No 79
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.34 E-value=9.2e-05 Score=57.95 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=14.6
Q ss_pred EeeecCccccccccccc-cccccccceEEecc
Q psy18121 59 VVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY 89 (109)
Q Consensus 59 lDL~S~N~~rl~elP~~-I~~F~~LksL~~~~ 89 (109)
+|+ |.| +++.+|+. ++.+..|++|++++
T Consensus 79 L~L-s~n--~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 79 LDL-SDN--HLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp EEC-TTS--CCCSCCHHHHTTCTTCCEEECTT
T ss_pred EEC-CCC--ccCccCHHHhccCCCCcEEECCC
Confidence 555 444 55555543 55555555555555
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.34 E-value=0.00025 Score=50.35 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=43.9
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEE-EeeecCcccc-ccccccc-cccc-cccceEEecc-eeeccCch
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRK-LKDFPNS-GGKY-DLSDSVIVVY-FNITYPGL 97 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~r-l~elP~~-I~~F-~~LksL~~~~-~l~~~P~~ 97 (109)
.|.|+++++.++|..+ +.. ..++ +|+ +.| + ++.+|+. ++.+ ..|+.|++++ .+..+|..
T Consensus 160 ~L~l~~n~l~~i~~~~--~~~-~~L~~L~L-~~n--~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 160 TLKLYNNGFTSVQGYA--FNG-TKLDAVYL-NKN--KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp EEECCSCCCCEECTTT--TTT-CEEEEEEC-TTC--TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred EEEcCCCCCcccCHhh--cCC-CCCCEEEc-CCC--CCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 6778888888888766 334 3566 888 777 6 8888764 5677 8888888888 77788765
No 81
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.33 E-value=6.9e-05 Score=54.84 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=10.2
Q ss_pred ceeEecCCCCCCCCCC
Q psy18121 32 GELNLSGRKLKDFPNS 47 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~ 47 (109)
-+|.|++++++++|..
T Consensus 31 ~~L~L~~n~l~~i~~~ 46 (306)
T 2z66_A 31 TRLELESNKLQSLPHG 46 (306)
T ss_dssp CEEECCSSCCCCCCTT
T ss_pred CEEECCCCccCccCHh
Confidence 4566666666666654
No 82
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.31 E-value=0.00021 Score=56.79 Aligned_cols=68 Identities=7% Similarity=-0.026 Sum_probs=43.8
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeecc-Cchhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITY-PGLSMAIRK 103 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K 103 (109)
-.|.|+++++.++|...- ..+..-..+|+ +.| +++++|..++.+..|+.|++++ .+..+ |..++.+.+
T Consensus 257 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l-~~n--~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTF-HCFSGLQELDL-TAT--HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp EEEECTTCCCSSCCTTTT-TTCTTCSEEEC-TTS--CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred eEEEeecCccCccCHHHh-ccccCCCEEec-cCC--ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence 357777888888777531 22443334888 777 7888888887888888888877 55544 444444433
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.00014 Score=56.88 Aligned_cols=70 Identities=7% Similarity=-0.123 Sum_probs=43.1
Q ss_pred hhceeEecCCCCCCCC-CCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeec--cCchhhhhhhhh
Q psy18121 30 LSGELNLSGRKLKDFP-NSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNIT--YPGLSMAIRKAQ 105 (109)
Q Consensus 30 kTGvL~Ls~rkLkeFP-~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~--~P~~~g~l~K~~ 105 (109)
.=-+|.|+++++.+++ ..+. .+..-..+|| |.| +|+++|.. .+..|++|++++ .+.. +|+.++.+++-+
T Consensus 46 ~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L-s~N--~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 46 KLRILIISHNRIQYLDISVFK--FNQELEYLDL-SHN--KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp TCCEEECCSSCCCEEEGGGGT--TCTTCCEEEC-CSS--CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred cccEEecCCCccCCcChHHhh--cccCCCEEec-CCC--ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence 3356777777777763 3442 2433233777 777 77777776 677777777777 5543 567777666544
Q ss_pred h
Q psy18121 106 W 106 (109)
Q Consensus 106 ~ 106 (109)
.
T Consensus 119 ~ 119 (520)
T 2z7x_B 119 F 119 (520)
T ss_dssp E
T ss_pred E
Confidence 3
No 84
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.30 E-value=0.00024 Score=52.37 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=34.9
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIR 102 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~ 102 (109)
-.|.|+++++.++|.... ..++ +|+ +.| +++.+| .++.+..|+.|++++ .+..+| .++.+.
T Consensus 88 ~~L~L~~N~l~~l~~~~~-----~~L~~L~L-~~N--~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~ 150 (263)
T 1xeu_A 88 EELSVNRNRLKNLNGIPS-----ACLSRLFL-DNN--ELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLS 150 (263)
T ss_dssp CEEECCSSCCSCCTTCCC-----SSCCEEEC-CSS--CCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCT
T ss_pred CEEECCCCccCCcCcccc-----CcccEEEc-cCC--ccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCC
Confidence 356666666666665331 3344 666 656 666665 366666777777766 666555 344333
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.29 E-value=0.0002 Score=51.75 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=29.2
Q ss_pred eeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccC
Q psy18121 33 ELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P 95 (109)
+|.|+++++.++|.. +. .+..-..+|+ +.| ++.++|+ .++.+..|++|++++ .+..+|
T Consensus 32 ~L~ls~n~l~~~~~~~~~--~l~~L~~L~l-~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 32 NLDLSFNPLRHLGSYSFF--SFPELQVLDL-SRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp EEECTTCCCCEECTTTTT--TCTTCSEEEC-TTC--CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred EEECCCCcccccCHhHhc--cccCCcEEEC-CCC--cCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 455566666555552 21 2332222555 555 5555554 355555555555555 444443
No 86
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.29 E-value=0.00019 Score=60.38 Aligned_cols=40 Identities=8% Similarity=-0.049 Sum_probs=20.7
Q ss_pred EeeecCccccccccccccccccccceEEecc-ee-eccCchhhhh
Q psy18121 59 VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FN-ITYPGLSMAI 101 (109)
Q Consensus 59 lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l-~~~P~~~g~l 101 (109)
+|| +.| +|+.+|..++++..|+.|++++ .+ ..+|+.++.+
T Consensus 212 L~L-s~N--~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 212 FRC-REN--RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp EEC-CSS--CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred Eec-CCC--cceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 555 555 5555555555555555555555 22 3344444443
No 87
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.28 E-value=0.00014 Score=55.51 Aligned_cols=35 Identities=9% Similarity=-0.066 Sum_probs=16.9
Q ss_pred EeeecCcccccccc-ccccccccccceEEecc-eeeccCc
Q psy18121 59 VVYFSRSGRKLKDF-PNSGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 59 lDL~S~N~~rl~el-P~~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
+|+ |.| +++.+ |..++.+..|+.|++++ .+..+|.
T Consensus 352 L~L-s~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 352 LDL-SYN--HIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp EEC-CSS--CCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EEC-CCC--cccccChhhccccccccEEECCCCccccCCH
Confidence 455 444 45444 23445555555555555 4444444
No 88
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.26 E-value=0.0004 Score=55.17 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=32.9
Q ss_pred ceeEecCCCCCCC-CCCCCCcccCCcEEEeeecCccccccccc-cccccccccceEEecc-eee--ccCchhhhhhh
Q psy18121 32 GELNLSGRKLKDF-PNSGGKYDLSDSVIVVYFSRSGRKLKDFP-NSGGKYDLSDSVIVVY-FNI--TYPGLSMAIRK 103 (109)
Q Consensus 32 GvL~Ls~rkLkeF-P~~~~~~dLsdtlrlDL~S~N~~rl~elP-~~I~~F~~LksL~~~~-~l~--~~P~~~g~l~K 103 (109)
-+|.|+++++.++ |..+. .+..-..+|+ +.| ++..+| ..++++..|++|++++ .+. .+|+.++.+++
T Consensus 83 ~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 154 (606)
T 3vq2_A 83 SNLILTGNPIQSFSPGSFS--GLTSLENLVA-VET--KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154 (606)
T ss_dssp CEEECTTCCCCCCCTTSST--TCTTCCEEEC-TTS--CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred CEeECCCCcccccChhhcC--CcccCCEEEc-cCC--ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence 3555666666655 33332 2332222555 555 555555 3455555555555555 333 24555555444
No 89
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.25 E-value=0.00024 Score=51.97 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=44.6
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc-eeecc
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITY 94 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~ 94 (109)
.+..++++|+++|.... ....++|+ +.| +++++|.. ++++..|+.|++++ .+..+
T Consensus 11 ~l~c~~~~l~~ip~~~~----~~l~~L~L-~~n--~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 67 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP----SSATRLEL-ESN--KLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67 (306)
T ss_dssp EEECCSSCCSSCCSCCC----TTCCEEEC-CSS--CCCCCCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred EEEcCCCCcccCCCCCC----CCCCEEEC-CCC--ccCccCHhHhhccccCCEEECCCCccCcc
Confidence 57889999999998762 33444999 888 99999997 58999999999998 55544
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.24 E-value=0.00012 Score=58.72 Aligned_cols=68 Identities=12% Similarity=-0.089 Sum_probs=55.8
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eee--ccCchhhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNI--TYPGLSMAIRKA 104 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~--~~P~~~g~l~K~ 104 (109)
-.|.|+++++..+|..+ ..+..-..+|+ |.| +|+.+|..++.+..|+.|++++ .+. .+|+.++.+.+-
T Consensus 194 ~~L~Ls~N~l~~~~~~~--~~l~~L~~L~L-s~N--~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 194 KTLDLSSNKLAFMGPEF--QSAAGVTWISL-RNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp CEEECCSSCCCEECGGG--GGGTTCSEEEC-TTS--CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred CEEECCCCCCCCCCHhH--cCCCCccEEEe-cCC--cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 47999999999999987 44655455999 998 9999999999999999999999 555 677766665543
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.24 E-value=0.00039 Score=48.44 Aligned_cols=67 Identities=3% Similarity=-0.102 Sum_probs=41.8
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeec-cCchhhhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNIT-YPGLSMAIRKAQ 105 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~-~P~~~g~l~K~~ 105 (109)
-.|.|+++++.++| .+ ..+..-..+|+ +.| +++.+| .++.+..|+.|++++ .+.. .|+.++.+.+-+
T Consensus 47 ~~L~l~~n~i~~l~-~l--~~l~~L~~L~l-~~n--~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 47 TYITLANINVTDLT-GI--EYAHNIKDLTI-NNI--HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp CEEEEESSCCSCCT-TG--GGCTTCSEEEE-ESC--CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred cEEeccCCCccChH-HH--hcCCCCCEEEc-cCC--CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 47888899998888 44 23443333777 666 666655 566677777777777 4433 455555554433
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.23 E-value=0.00017 Score=51.26 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=24.3
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccc-cccccc-ccccccccceEEec
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRK-LKDFPN-SGGKYDLSDSVIVV 88 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~r-l~elP~-~I~~F~~LksL~~~ 88 (109)
.|.|++++++++|...- ..+..-..+|+ +.| + ++.+|+ .++.+..|++|+++
T Consensus 35 ~L~l~~n~l~~i~~~~~-~~l~~L~~L~l-~~n--~~l~~i~~~~f~~l~~L~~L~l~ 88 (239)
T 2xwt_C 35 TLKLIETHLRTIPSHAF-SNLPNISRIYV-SID--VTLQQLESHSFYNLSKVTHIEIR 88 (239)
T ss_dssp EEEEESCCCSEECTTTT-TTCTTCCEEEE-ECC--SSCCEECTTTEESCTTCCEEEEE
T ss_pred EEEEeCCcceEECHHHc-cCCCCCcEEeC-CCC--CCcceeCHhHcCCCcCCcEEECC
Confidence 55555555555555220 11332222555 444 4 555554 34455555555554
No 93
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.23 E-value=0.00032 Score=54.37 Aligned_cols=60 Identities=8% Similarity=-0.023 Sum_probs=31.2
Q ss_pred ceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccc-ccccccccccceEEecc-eeeccCc
Q psy18121 32 GELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDF-PNSGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~el-P~~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
-+|.|++++++++|.. +. .+..-..+|| +.| +++.+ |..++.+..|+.|++++ .+..+|.
T Consensus 35 ~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L-~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFA--SFPHLEELEL-NEN--IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp SEEECCSSCCCEECTTTTT--TCTTCCEEEC-TTS--CCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred cEEECCCCccceECHhHcc--CCCCCCEEEC-CCC--ccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence 3555555555555432 21 1322222666 555 56655 34556666666666666 5555554
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.20 E-value=0.00027 Score=53.54 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=48.6
Q ss_pred hceeEecCCCCCCCCCCCCCcccCCcEEEeeecC-ccccccccccc-cccccccceEEecc-eeeccCch
Q psy18121 31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSR-SGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL 97 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~-N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~ 97 (109)
.-+|.|++++++++|..+ +....-.++|+ +. | +++++|++ +..+..|+.|++++ .+.++|..
T Consensus 156 l~~L~L~~N~i~~i~~~~--f~~~~L~~l~l-~~~n--~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSA--FNGTQLDELNL-SDNN--NLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp CEEEECCSSCCCEECTTS--STTEEEEEEEC-TTCT--TCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred hhhhccccccccCCChhh--ccccchhHHhh-ccCC--cccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 456889999999999887 44554445888 54 5 89999986 48889999999998 88888864
No 95
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.20 E-value=0.00024 Score=57.77 Aligned_cols=69 Identities=10% Similarity=-0.019 Sum_probs=45.1
Q ss_pred ceeEecCCCCCCCCC-CCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhhhh
Q psy18121 32 GELNLSGRKLKDFPN-SGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRKAQ 105 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~-~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K~~ 105 (109)
-.|.|+++++..++. .+. .+..-..+|| |.| +++.+|..++.+..|+.|++++ .+..+|..++.+.+-+
T Consensus 257 ~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L-s~N--~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 257 VEVDLSYNELEKIMYHPFV--KMQRLERLYI-SNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327 (597)
T ss_dssp SEEECCSSCCCEEESGGGT--TCSSCCEEEC-TTS--CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred CEEECCCCccCCCCHHHhc--CccCCCEEEC-CCC--CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCC
Confidence 456777777776643 332 2433333777 777 7777777777777788888777 7777777766665443
No 96
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.20 E-value=0.00024 Score=57.70 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=27.8
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccc-cccccccceEEecc-eeeccCch
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY-FNITYPGL 97 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~-I~~F~~LksL~~~~-~l~~~P~~ 97 (109)
-+|.|+++++.++|...- ..+. .++ +|| +.| +|+.+|+. ++.+..|++|++++ .+..+|..
T Consensus 78 ~~L~L~~n~l~~~~~~~~-~~l~-~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 141 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAF-AYAH-TIQKLYM-GFN--AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141 (597)
T ss_dssp SEEECTTSCCCEECTTTT-TTCT-TCCEEEC-CSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cEEECCCCCCCCCChHHh-cCCC-CCCEEEC-CCC--cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence 345555555555554220 1122 222 555 444 45555443 34555555555555 44444443
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.19 E-value=0.00039 Score=52.07 Aligned_cols=57 Identities=7% Similarity=-0.038 Sum_probs=39.4
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P 95 (109)
-.|.+++++++++|. + ..+..-..+|+ |.| +++++|+ ++.+..|+.|++++ .+..+|
T Consensus 44 ~~L~l~~~~i~~l~~-~--~~l~~L~~L~L-~~n--~i~~~~~-~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 44 TTLSAFGTGVTTIEG-V--QYLNNLIGLEL-KDN--QITDLAP-LKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp CEEECTTSCCCCCTT-G--GGCTTCCEEEC-CSS--CCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred CEEEeeCCCccCchh-h--hccCCCCEEEc-cCC--cCCCChh-HccCCCCCEEEccCCcCCCch
Confidence 367788888888873 3 23444334888 777 7888887 77777888888877 655554
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.16 E-value=0.00043 Score=51.56 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=41.4
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK 103 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K 103 (109)
-.|.+++++++++|. + ..+..-..+|+ +.| +++.+|+ ++.+..|+.|++++ .+..+|+ ++.+++
T Consensus 49 ~~L~l~~~~i~~~~~-~--~~l~~L~~L~L-~~n--~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~ 113 (291)
T 1h6t_A 49 DQIIANNSDIKSVQG-I--QYLPNVTKLFL-NGN--KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKK 113 (291)
T ss_dssp CEEECTTSCCCCCTT-G--GGCTTCCEEEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTT
T ss_pred cEEEccCCCcccChh-H--hcCCCCCEEEc-cCC--ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCC
Confidence 457778888888764 3 22444334777 777 7777777 77777777777777 6555554 444443
No 99
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.14 E-value=0.0003 Score=54.78 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=6.2
Q ss_pred eeEecCCCCCCCC
Q psy18121 33 ELNLSGRKLKDFP 45 (109)
Q Consensus 33 vL~Ls~rkLkeFP 45 (109)
.|.|+++++.++|
T Consensus 79 ~L~L~~n~i~~~~ 91 (452)
T 3zyi_A 79 YLNLMENNIQMIQ 91 (452)
T ss_dssp EEECCSSCCCEEC
T ss_pred EEECcCCcCceEC
Confidence 4444444444443
No 100
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.14 E-value=0.00051 Score=55.49 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=26.2
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY 89 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~ 89 (109)
++..++++|.++|..+. .....+|+ |.| .++.+|+ .++++..|++|++++
T Consensus 8 ~~~cs~~~L~~ip~~~~----~~l~~L~L-s~n--~l~~~~~~~~~~l~~L~~L~Ls~ 58 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP----TNITVLNL-THN--QLRRLPAANFTRYSQLTSLDVGF 58 (680)
T ss_dssp EEECCSSCCSSCCSCSC----TTCSEEEC-CSS--CCCCCCGGGGGGGTTCSEEECCS
T ss_pred eeECCCCCccccccccC----CCCcEEEC-CCC--CCCCcCHHHHhCCCcCcEEECCC
Confidence 45566666666665431 12222566 555 5555555 355555555555555
No 101
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.13 E-value=0.00048 Score=57.78 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=32.1
Q ss_pred eeEecCCCCC-CCCCCCCCcccCCcEEEeeecCcccccc-ccccccccccccceEEecc-eee-ccCchhhhhhhh
Q psy18121 33 ELNLSGRKLK-DFPNSGGKYDLSDSVIVVYFSRSGRKLK-DFPNSGGKYDLSDSVIVVY-FNI-TYPGLSMAIRKA 104 (109)
Q Consensus 33 vL~Ls~rkLk-eFP~~~~~~dLsdtlrlDL~S~N~~rl~-elP~~I~~F~~LksL~~~~-~l~-~~P~~~g~l~K~ 104 (109)
+|.|+++++. .+|..+ ..+..-..+|+ +.| ++. .+|.+++.+..|+.|++++ .+. .+|+.++.+++-
T Consensus 470 ~L~L~~N~l~~~~p~~l--~~l~~L~~L~L-~~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGL--SNCTNLNWISL-SNN--RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp EEECCSSCCCSCCCGGG--GGCTTCCEEEC-CSS--CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred EEEecCCcccCcCCHHH--hcCCCCCEEEc-cCC--ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 3445555554 334333 22332222555 555 555 4555555555555555555 222 455555554443
No 102
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.12 E-value=0.0003 Score=54.52 Aligned_cols=64 Identities=6% Similarity=0.126 Sum_probs=31.7
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhhh
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIRK 103 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~K 103 (109)
.+..++++|.++|..+. .....+|| +.| +++.+|+ .++.+..|+.|++++ .+..+ |+.++.+.+
T Consensus 15 ~v~c~~~~l~~ip~~~~----~~l~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP----TETRLLDL-GKN--RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81 (477)
T ss_dssp EEECCSCCCSSCCSCCC----TTCSEEEC-CSS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred EEEeCCCCcCcCCCCCC----CCCcEEEC-CCC--ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence 34555555666555431 12222555 555 5555543 455556666666655 44444 444444433
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.12 E-value=0.0003 Score=59.14 Aligned_cols=63 Identities=13% Similarity=0.008 Sum_probs=49.4
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCcccccccccccccccccc-------ceEEecc-eeeccCchhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLS-------DSVIVVY-FNITYPGLSMAIR 102 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~L-------ksL~~~~-~l~~~P~~~g~l~ 102 (109)
-+|.|++++|..+|. +. ..++ +|| |.| +|+.+|. ++. .| +.|++++ .+..+|+.++.+.
T Consensus 163 ~~L~Ls~N~L~~lp~-l~-----~~L~~L~L-s~N--~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~ 230 (571)
T 3cvr_A 163 EVLSVRNNQLTFLPE-LP-----ESLEALDV-STN--LLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLD 230 (571)
T ss_dssp CEEECCSSCCSCCCC-CC-----TTCCEEEC-CSS--CCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSC
T ss_pred CEEECCCCCCCCcch-hh-----CCCCEEEC-cCC--CCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCC
Confidence 468888888888887 42 4566 999 999 9999999 776 78 9999999 9999999888776
Q ss_pred hhhh
Q psy18121 103 KAQW 106 (109)
Q Consensus 103 K~~~ 106 (109)
+-+.
T Consensus 231 ~L~~ 234 (571)
T 3cvr_A 231 PTCT 234 (571)
T ss_dssp TTEE
T ss_pred CCCE
Confidence 6543
No 104
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.12 E-value=0.00026 Score=54.96 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=8.0
Q ss_pred ceeEecCCCCCCCCC
Q psy18121 32 GELNLSGRKLKDFPN 46 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~ 46 (109)
-+|.|++++++.+|.
T Consensus 67 ~~L~L~~n~i~~~~~ 81 (440)
T 3zyj_A 67 RLLNLHENQIQIIKV 81 (440)
T ss_dssp SEEECCSCCCCEECT
T ss_pred cEEEccCCcCCeeCH
Confidence 345555555555553
No 105
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.10 E-value=0.00033 Score=54.77 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=28.4
Q ss_pred ceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccC
Q psy18121 32 GELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P 95 (109)
-.|.|+++++..+|.. + ..+..-..+|+ |.| ++..+|+ .++.+..|+.|++++ .+..+|
T Consensus 31 ~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L-s~n--~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSF--FSFPELQVLDL-SRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp CEEECCSCCCCEECTTTT--TTCSSCCEEEC-TTC--CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred cEEEccCCccCccChhHh--hCCCCceEEEC-CCC--cCCccCcccccCchhCCEEeCcCCcCCccC
Confidence 3455556555555542 2 12332222555 555 5555543 345555555555555 444443
No 106
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.08 E-value=0.00025 Score=62.60 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=43.9
Q ss_pred hhceeEecCCCCCCCCC--CCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121 30 LSGELNLSGRKLKDFPN--SGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK 103 (109)
Q Consensus 30 kTGvL~Ls~rkLkeFP~--~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K 103 (109)
.=-.|.|+++++.++|. .+. .+..-..+|| |.| +|+.+| .++.+..|+.|++++ .+..+|+.++.+.+
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~L-s~N--~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~ 619 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDC-VHN--KVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHT--TCTTCCEEEC-TTS--CCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECT
T ss_pred CccEEEeeCCcCCccCChhhhh--cCCCCCEEEC-CCC--Ccccch-hhcCCCcceEEECcCCccccchHHHhhccc
Confidence 34577888888888887 552 2443333777 666 677777 666777777777776 66666666655544
No 107
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.08 E-value=0.00033 Score=53.53 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=20.0
Q ss_pred EeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhh
Q psy18121 59 VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIR 102 (109)
Q Consensus 59 lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~ 102 (109)
+|+ |.| ++.++|+ .++.+..|+.|++++ .+..+ |+.++.+.
T Consensus 328 L~L-s~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 328 LNL-SQN--FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp EEC-CSS--CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred EEC-CCC--ccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 555 555 5555532 345555555555555 44443 44444433
No 108
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.04 E-value=0.00063 Score=52.96 Aligned_cols=65 Identities=8% Similarity=0.019 Sum_probs=45.6
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccC-chhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP-GLSMAIRK 103 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P-~~~g~l~K 103 (109)
+.+..++++|.++|..+. .....+|| +.| +|+.+|+ .++.+..|+.|++++ .+..+| +.++-+.+
T Consensus 57 ~~v~c~~~~l~~iP~~~~----~~l~~L~L-~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP----SNTRYLNL-MEN--NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp CEEECCSSCCSSCCSCCC----TTCSEEEC-CSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred cEEEECCCCcCccCCCCC----CCccEEEC-cCC--cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence 578899999999998652 23334888 777 7888754 577888888888887 555554 44444443
No 109
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.04 E-value=0.00053 Score=51.33 Aligned_cols=57 Identities=12% Similarity=0.055 Sum_probs=30.1
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P 95 (109)
-+|.|+++++.++|. + ..+..-..+|+ +.| +++.+| .++.+..|++|++++ .+..+|
T Consensus 66 ~~L~L~~n~i~~~~~-~--~~l~~L~~L~L-~~n--~l~~~~-~~~~l~~L~~L~l~~n~l~~~~ 123 (308)
T 1h6u_A 66 IGLELKDNQITDLAP-L--KNLTKITELEL-SGN--PLKNVS-AIAGLQSIKTLDLTSTQITDVT 123 (308)
T ss_dssp CEEECCSSCCCCCGG-G--TTCCSCCEEEC-CSC--CCSCCG-GGTTCTTCCEEECTTSCCCCCG
T ss_pred CEEEccCCcCCCChh-H--ccCCCCCEEEc-cCC--cCCCch-hhcCCCCCCEEECCCCCCCCch
Confidence 456666666666665 3 22332222566 555 555554 355555555555555 444444
No 110
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.02 E-value=0.00052 Score=54.71 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=29.5
Q ss_pred cEE-EeeecCccccccccccccccccccceEEecc-eeeccCchhh
Q psy18121 56 SVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSM 99 (109)
Q Consensus 56 tlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g 99 (109)
.++ +|+ +.| +++.+| +++.+..|+.|++++ .+..+|+.+.
T Consensus 132 ~L~~L~L-~~n--~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~ 173 (454)
T 1jl5_A 132 LLEYLGV-SNN--QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPP 173 (454)
T ss_dssp TCCEEEC-CSS--CCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCT
T ss_pred CCCEEEC-cCC--CCCCCc-ccCCCCCCCEEECCCCcCcccCCCcc
Confidence 455 777 777 788887 578888888888887 7777776654
No 111
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.97 E-value=0.00064 Score=57.49 Aligned_cols=39 Identities=15% Similarity=0.064 Sum_probs=22.6
Q ss_pred EeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121 59 VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK 103 (109)
Q Consensus 59 lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K 103 (109)
+|+ |.| +|+.+|. .+..|+.|++++ .+..+|+.++.+.+
T Consensus 246 L~L-s~N--~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~ 285 (622)
T 3g06_A 246 LMV-SGN--RLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSS 285 (622)
T ss_dssp EEC-CSS--CCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCT
T ss_pred EEC-CCC--CCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccc
Confidence 555 555 5666655 445566666666 55566665555443
No 112
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.95 E-value=0.0011 Score=45.58 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=42.0
Q ss_pred ceeEecCCCCC--CCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecc
Q psy18121 32 GELNLSGRKLK--DFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVY 89 (109)
Q Consensus 32 GvL~Ls~rkLk--eFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~ 89 (109)
.++..++++|+ ++|..+. .+...+|| +.| +|+.||.. +..+..|+.|.+++
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp----~~l~~L~L-s~N--~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP----VDTTELVL-TGN--NLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC----TTCSEEEC-TTS--CCSSCCTTTGGGCTTCCEEECCS
T ss_pred CEEEeCCCCCccccCCCCCC----cCCCEEEC-CCC--cCCccChhhhhhccccCEEEecC
Confidence 47889999999 9997652 23445999 999 99999996 46788999999987
No 113
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=96.94 E-value=0.00091 Score=51.88 Aligned_cols=64 Identities=8% Similarity=0.076 Sum_probs=43.4
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeeccC-chhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYP-GLSMAIR 102 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P-~~~g~l~ 102 (109)
..+..++++|+++|..+. .+...+|| +.| +|+.+|+ .++.+..|+.|++++ .+..+| +.+.-+.
T Consensus 46 ~~v~c~~~~l~~iP~~~~----~~l~~L~L-~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS----TNTRLLNL-HEN--QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112 (440)
T ss_dssp CEEECCSCCCSSCCSCCC----TTCSEEEC-CSC--CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred CEEEeCCCCcCcCCCCCC----CCCcEEEc-cCC--cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence 467889999999998762 23333888 777 7877774 567777777777777 555554 3344333
No 114
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.92 E-value=0.0005 Score=55.55 Aligned_cols=66 Identities=11% Similarity=-0.019 Sum_probs=35.1
Q ss_pred ceeEecCCCCCCCCCC-CCCcccCCcEEEeeecCcccccccccc-ccccccccceEEecc-eeecc-Cchhhhhh
Q psy18121 32 GELNLSGRKLKDFPNS-GGKYDLSDSVIVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITY-PGLSMAIR 102 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~-~~~~dLsdtlrlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~-P~~~g~l~ 102 (109)
-+|.|+++++.++|.. +. .+..-..+|+ +.| ++..+|+ .++.+..|++|++++ .+... |+.++.++
T Consensus 76 ~~L~L~~n~l~~l~~~~~~--~l~~L~~L~L-~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 145 (680)
T 1ziw_A 76 KVLNLQHNELSQLSDKTFA--FCTNLTELHL-MSN--SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145 (680)
T ss_dssp CEEECCSSCCCCCCTTTTT--TCTTCSEEEC-CSS--CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT
T ss_pred CEEECCCCccCccChhhhc--cCCCCCEEEC-CCC--ccCccChhHccccCCCCEEECCCCcccccCchhhcccc
Confidence 4566666666666653 32 1332222666 666 6666664 466666666666666 33332 34444333
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=96.89 E-value=0.00074 Score=47.01 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=13.4
Q ss_pred EeeecCccccccc-cccccccccccceEEecc
Q psy18121 59 VVYFSRSGRKLKD-FPNSGGKYDLSDSVIVVY 89 (109)
Q Consensus 59 lDL~S~N~~rl~e-lP~~I~~F~~LksL~~~~ 89 (109)
+|+ +.| +++. .|..++.+..|+.|++++
T Consensus 117 L~L-s~n--~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 117 LDI-SHS--AHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp EEC-CSS--BCBGGGHHHHTTCSSCCEEECCS
T ss_pred EEe-cCC--ccCcHhHHHHhhCCCCCEEEccC
Confidence 555 444 4443 344444555555555554
No 116
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=96.86 E-value=0.00099 Score=49.59 Aligned_cols=34 Identities=3% Similarity=-0.034 Sum_probs=18.8
Q ss_pred EeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121 59 VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 59 lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
+|+ +.| +++.+|+ ++.+..|+.|++++ .+..+|.
T Consensus 161 L~L-~~N--~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 161 LSL-EDN--QISDIVP-LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp EEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred EEc-cCC--ccccchh-hcCCCccCEEECCCCcCCCChh
Confidence 555 555 5555555 55555555565555 5555443
No 117
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=96.85 E-value=0.00097 Score=49.24 Aligned_cols=57 Identities=9% Similarity=0.024 Sum_probs=38.0
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P 95 (109)
.+|.++++++.++|. + ..+..-..+|+ +.| +++++|+ ++.+..|++|++++ .+..+|
T Consensus 47 ~~L~l~~~~i~~~~~-~--~~~~~L~~L~l-~~n--~i~~~~~-~~~l~~L~~L~L~~n~i~~~~ 104 (347)
T 4fmz_A 47 TKLVVAGEKVASIQG-I--EYLTNLEYLNL-NGN--QITDISP-LSNLVKLTNLYIGTNKITDIS 104 (347)
T ss_dssp SEEECCSSCCCCCTT-G--GGCTTCCEEEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred cEEEEeCCccccchh-h--hhcCCccEEEc-cCC--ccccchh-hhcCCcCCEEEccCCcccCch
Confidence 467788888888775 2 22433333777 777 7777777 77777777777777 555554
No 118
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=96.83 E-value=0.0013 Score=48.53 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=52.8
Q ss_pred hhhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121 28 AHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK 103 (109)
Q Consensus 28 A~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K 103 (109)
...=-+|.|+++++.++|. + ..+..-..+|+ +.| +++++| .++.+..|++|++++ .+..+|. +..+.+
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~--~~l~~L~~L~L-~~n--~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~ 133 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-L--SNLVKLTNLYI-GTN--KITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTK 133 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-G--TTCTTCCEEEC-CSS--CCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTT
T ss_pred cCCccEEEccCCccccchh-h--hcCCcCCEEEc-cCC--cccCch-HHcCCCcCCEEECcCCcccCchh-hccCCc
Confidence 3444689999999999998 4 23544444999 888 999987 589999999999999 8877776 544444
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.77 E-value=0.0014 Score=51.22 Aligned_cols=64 Identities=9% Similarity=0.025 Sum_probs=42.3
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK 103 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K 103 (109)
-.|.+++++++++|. . ..+..-..+|+ |.| +++.+|+ ++.+..|+.|++++ .+..+|. ++.+.+
T Consensus 49 ~~L~l~~~~i~~l~~-~--~~l~~L~~L~L-s~n--~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 49 TTLQADRLGIKSIDG-V--EYLNNLTQINF-SNN--QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp CEEECCSSCCCCCTT-G--GGCTTCCEEEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred cEEecCCCCCccCcc-h--hhhcCCCEEEC-CCC--ccCCchh-hhccccCCEEECCCCccccChh-hcCCCC
Confidence 467788888888875 2 22443333888 777 7888877 77777777777777 6666655 444443
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.76 E-value=0.0011 Score=52.85 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=16.9
Q ss_pred EeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121 59 VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 59 lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
+|+ +.| +++.+| +++.+..|+.|++++ .+..+|+
T Consensus 178 L~L-~~n--~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 178 IAA-GNN--QLEELP-ELQNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp EEC-CSS--CCSSCC-CCTTCTTCCEEECCSSCCSSCCC
T ss_pred EEC-cCC--cCCcCc-cccCCCCCCEEECCCCcCCcCCC
Confidence 444 444 455554 345555555555555 4444443
No 121
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.75 E-value=0.001 Score=49.25 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=43.1
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY 89 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~ 89 (109)
-.|.|+++++.++|..+. ..++ +|| |.| +|+.+|. ...+..|+.|++++
T Consensus 254 ~~L~Ls~N~l~~lp~~~~-----~~L~~L~L-s~N--~l~~~~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 254 NSLNLSFAGLEQVPKGLP-----AKLRVLDL-SSN--RLNRAPQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp CCEECCSSCCCSCCSCCC-----SCCSCEEC-CSC--CCCSCCC-TTSCCCCSCEECSS
T ss_pred CEEECCCCCCCchhhhhc-----CCCCEEEC-CCC--cCCCCch-hhhCCCccEEECcC
Confidence 478999999999998762 4666 999 999 9999987 68999999999998
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.72 E-value=0.0013 Score=51.37 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=30.2
Q ss_pred hceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121 31 SGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P 95 (109)
=-+|.|+++++.++|. +. .+..-..+|+ +.| ++..+|+ ++.+..|++|++++ .+..+|
T Consensus 70 L~~L~Ls~n~l~~~~~-~~--~l~~L~~L~l-~~n--~l~~~~~-~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 70 LTQINFSNNQLTDITP-LK--NLTKLVDILM-NNN--QIADITP-LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp CCEEECCSSCCCCCGG-GT--TCTTCCEEEC-CSS--CCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCEEECCCCccCCchh-hh--ccccCCEEEC-CCC--ccccChh-hcCCCCCCEEECCCCCCCCCh
Confidence 3567777777777765 31 2332222555 544 5555555 55555555555555 444443
No 123
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.71 E-value=0.0014 Score=52.22 Aligned_cols=56 Identities=5% Similarity=-0.009 Sum_probs=32.0
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P 95 (109)
-+|.|+++++.++| .+ ..+..-..+|+ +.| +|+.+| ++.+..|+.|++++ .+..+|
T Consensus 45 ~~L~Ls~n~l~~~~-~l--~~l~~L~~L~L-s~n--~l~~~~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 45 TSLDCHNSSITDMT-GI--EKLTGLTKLIC-TSN--NITTLD--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp CEEECCSSCCCCCT-TG--GGCTTCSEEEC-CSS--CCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred CEEEccCCCcccCh-hh--cccCCCCEEEc-cCC--cCCeEc--cccCCCCCEEECcCCCCceee
Confidence 35677777777776 33 22333333666 666 666665 56666666666666 554443
No 124
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.57 E-value=0.0026 Score=53.98 Aligned_cols=49 Identities=10% Similarity=-0.050 Sum_probs=25.1
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCcccccccc-ccccccccccceEEecc
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDF-PNSGGKYDLSDSVIVVY 89 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~el-P~~I~~F~~LksL~~~~ 89 (109)
++..++++|.++|. . .+....+|| |.| +++.+ |..++.+..|+.|++++
T Consensus 8 ~~dcs~~~L~~vP~-l----p~~l~~LdL-s~N--~i~~i~~~~~~~l~~L~~LdLs~ 57 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-V----LNTTERLLL-SFN--YIRTVTASSFPFLEQLQLLELGS 57 (844)
T ss_dssp EEEESCCCSSCCCS-S----CTTCCEEEE-ESC--CCCEECSSSCSSCCSCSEEEECT
T ss_pred EEEccCCCCCCCCC-C----CCCcCEEEC-CCC--cCCccChhHCcccccCeEEeCCC
Confidence 45556666666665 2 222223666 555 56555 23445555555555544
No 125
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.50 E-value=0.0018 Score=54.33 Aligned_cols=56 Identities=9% Similarity=-0.019 Sum_probs=31.3
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccC
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYP 95 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P 95 (109)
.|.|+++++.++|. + ..+..-..+|| |.| +|+.+|+ ++.+..|+.|++++ .+..+|
T Consensus 47 ~L~l~~n~i~~l~~-l--~~l~~L~~L~L-s~N--~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~ 103 (605)
T 1m9s_A 47 QIIANNSDIKSVQG-I--QYLPNVTKLFL-NGN--KLTDIKP-LTNLKNLGWLFLDENKIKDLS 103 (605)
T ss_dssp CCBCTTCCCCCCTT-G--GGCTTCCEEEC-TTS--CCCCCGG-GGGCTTCCEEECCSSCCCCCT
T ss_pred EEECcCCCCCCChH-H--ccCCCCCEEEe-eCC--CCCCChh-hccCCCCCEEECcCCCCCCCh
Confidence 45666666666663 2 22333333666 666 6666665 56666666666666 444444
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.50 E-value=0.0026 Score=53.78 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=39.4
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecc-eeeccCc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
-+|.+++++|+++|..+. ..++ +|+ +.| +|+.||. .+..|++|++++ .+.++|.
T Consensus 43 ~~L~ls~n~L~~lp~~l~-----~~L~~L~L-~~N--~l~~lp~---~l~~L~~L~Ls~N~l~~lp~ 98 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP-----AHITTLVI-PDN--NLTSLPA---LPPELRTLEVSGNQLTSLPV 98 (622)
T ss_dssp CEEECCSSCCSCCCSCCC-----TTCSEEEE-CSC--CCSCCCC---CCTTCCEEEECSCCCSCCCC
T ss_pred cEEEecCCCcCccChhhC-----CCCcEEEe-cCC--CCCCCCC---cCCCCCEEEcCCCcCCcCCC
Confidence 579999999999998762 2344 777 777 7777777 466777777777 6666665
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.45 E-value=0.0028 Score=50.57 Aligned_cols=63 Identities=5% Similarity=-0.137 Sum_probs=37.3
Q ss_pred hhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeeccCchhhhhhh
Q psy18121 30 LSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITYPGLSMAIRK 103 (109)
Q Consensus 30 kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~P~~~g~l~K 103 (109)
.=-+|.|+++++.++| + ..+..-..+|+ +.| +|+.+| ++.+..|+.|++++ .+..+| ++.+.+
T Consensus 65 ~L~~L~Ls~n~l~~~~--~--~~l~~L~~L~L-s~N--~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~ 128 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD--L--SQNTNLTYLAC-DSN--KLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPL 128 (457)
T ss_dssp TCSEEECCSSCCSCCC--C--TTCTTCSEEEC-CSS--CCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTT
T ss_pred CCCEEEccCCcCCeEc--c--ccCCCCCEEEC-cCC--CCceee--cCCCCcCCEEECCCCcCCeec--CCCCCc
Confidence 3356777777777776 3 12333233777 666 676665 66666677776666 555554 444443
No 128
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.34 E-value=0.0033 Score=52.77 Aligned_cols=56 Identities=21% Similarity=0.137 Sum_probs=28.0
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccccccccccceEEecc-eeecc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVY-FNITY 94 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~~LksL~~~~-~l~~~ 94 (109)
-.|.|+++++.++|. + ..+..-..+|| +.| +|+.+| .++.+..|+.|++++ .+..+
T Consensus 68 ~~L~Ls~N~l~~~~~-l--~~l~~L~~L~L-s~N--~l~~l~-~l~~l~~L~~L~Ls~N~l~~l 124 (605)
T 1m9s_A 68 TKLFLNGNKLTDIKP-L--TNLKNLGWLFL-DEN--KIKDLS-SLKDLKKLKSLSLEHNGISDI 124 (605)
T ss_dssp CEEECTTSCCCCCGG-G--GGCTTCCEEEC-CSS--CCCCCT-TSTTCTTCCEEECTTSCCCCC
T ss_pred CEEEeeCCCCCCChh-h--ccCCCCCEEEC-cCC--CCCCCh-hhccCCCCCEEEecCCCCCCC
Confidence 356666666666655 2 12332222555 555 555544 455555555555555 44443
No 129
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=95.92 E-value=0.0064 Score=51.54 Aligned_cols=12 Identities=25% Similarity=0.265 Sum_probs=6.5
Q ss_pred eeEecCCCCCCC
Q psy18121 33 ELNLSGRKLKDF 44 (109)
Q Consensus 33 vL~Ls~rkLkeF 44 (109)
+|.|+++++..+
T Consensus 77 ~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 77 ILDLGSSKIYFL 88 (844)
T ss_dssp EEECTTCCCCEE
T ss_pred EEECCCCcCccc
Confidence 455555555555
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.40 E-value=0.0046 Score=45.23 Aligned_cols=69 Identities=3% Similarity=-0.210 Sum_probs=47.1
Q ss_pred hhhceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccc--cccccccccccceEEecc-eee-ccCchhhhhh
Q psy18121 29 HLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKD--FPNSGGKYDLSDSVIVVY-FNI-TYPGLSMAIR 102 (109)
Q Consensus 29 ~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~e--lP~~I~~F~~LksL~~~~-~l~-~~P~~~g~l~ 102 (109)
..--.|.++++++.+.+... ..+..-..+|+ +.| ++.. +|..++.+..|++|++++ .+. ..|+.++.+.
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~--~~~~~L~~L~L-~~~--~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEH--FSPFRVQHMDL-SNS--VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142 (336)
T ss_dssp TTCSEEECTTCEECSCCCSC--CCCBCCCEEEC-TTC--EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred ccceEEEcCCccccccchhh--ccCCCCCEEEc-cCC--CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence 34467888888888887776 44554444888 877 7764 788888888888888888 332 3444444433
No 131
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.98 E-value=0.057 Score=41.66 Aligned_cols=63 Identities=17% Similarity=0.017 Sum_probs=46.4
Q ss_pred hhhceeEecCCCCCCCCC---CCCCcccCCcEEEeeecCcccccccccccccccc--ccceEEecc-ee-eccCch
Q psy18121 29 HLSGELNLSGRKLKDFPN---SGGKYDLSDSVIVVYFSRSGRKLKDFPNSGGKYD--LSDSVIVVY-FN-ITYPGL 97 (109)
Q Consensus 29 ~kTGvL~Ls~rkLkeFP~---~~~~~dLsdtlrlDL~S~N~~rl~elP~~I~~F~--~LksL~~~~-~l-~~~P~~ 97 (109)
..=-.|.|++++|..++. .+ ..+..-..+|| |.| +|+.+ .++..+. .|+.|.+++ .+ .++|+.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~--~~l~~L~~L~L-s~N--~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIV--QKAPNLKILNL-SGN--ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHH--HHSTTCCEEEC-TTS--CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSH
T ss_pred CCCCEEECCCCCCCCCccchhHH--hhCCCCCEEEC-CCC--ccCCc-hhhhhcccCCcceEEccCCcCccccCcc
Confidence 345789999999998764 22 23444444999 999 99999 5577777 999999999 43 457754
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=93.33 E-value=0.012 Score=44.57 Aligned_cols=28 Identities=4% Similarity=-0.235 Sum_probs=17.5
Q ss_pred EeeecCccccccc-----ccccc-ccccccceEEecc
Q psy18121 59 VVYFSRSGRKLKD-----FPNSG-GKYDLSDSVIVVY 89 (109)
Q Consensus 59 lDL~S~N~~rl~e-----lP~~I-~~F~~LksL~~~~ 89 (109)
+|| +.| +|+. +|..+ +++..|++|++++
T Consensus 279 L~L-~~n--~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 279 LRL-QYN--EIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp EEC-CSS--CCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred EEC-cCC--cCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 666 555 6665 66665 4566666666666
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=93.30 E-value=0.012 Score=43.09 Aligned_cols=29 Identities=14% Similarity=-0.030 Sum_probs=16.0
Q ss_pred EeeecCcccc-c-cccccccccccccceEEecce
Q psy18121 59 VVYFSRSGRK-L-KDFPNSGGKYDLSDSVIVVYF 90 (109)
Q Consensus 59 lDL~S~N~~r-l-~elP~~I~~F~~LksL~~~~~ 90 (109)
+|+ +.| . + .+.|..++++..|++|+++++
T Consensus 227 L~l-~~~--~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 227 LDL-SDS--VMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp EEC-TTC--TTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred EeC-CCC--CcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 555 555 4 3 244555566666666666653
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=92.82 E-value=0.023 Score=42.99 Aligned_cols=33 Identities=6% Similarity=-0.247 Sum_probs=16.8
Q ss_pred EeeecCccccccccccc-c----ccc-cccceEEecc-eeecc
Q psy18121 59 VVYFSRSGRKLKDFPNS-G----GKY-DLSDSVIVVY-FNITY 94 (109)
Q Consensus 59 lDL~S~N~~rl~elP~~-I----~~F-~~LksL~~~~-~l~~~ 94 (109)
+|| |.| +++..+.. + ..+ ..|+.|++++ .+...
T Consensus 85 L~L-s~n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 85 LNL-SGN--FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp EEC-CSS--CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred EEC-cCC--cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 666 555 56554443 2 222 5666666666 44333
No 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=92.65 E-value=0.012 Score=44.49 Aligned_cols=60 Identities=2% Similarity=-0.055 Sum_probs=34.5
Q ss_pred HHHhhhhceeEecCCCCC------CCCCCCCCcccCCcEEEeeecCccccc-----cccccccccccccceEEecc
Q psy18121 25 LEEAHLSGELNLSGRKLK------DFPNSGGKYDLSDSVIVVYFSRSGRKL-----KDFPNSGGKYDLSDSVIVVY 89 (109)
Q Consensus 25 LE~A~kTGvL~Ls~rkLk------eFP~~~~~~dLsdtlrlDL~S~N~~rl-----~elP~~I~~F~~LksL~~~~ 89 (109)
+.....=-.|.|+++++. -+|..+ ..+..-..+|| |.| +| ..+|..+..+..|+.|++++
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l--~~~~~L~~L~L-s~n--~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDL-QDN--TFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTG--GGCTTCCEEEC-CSS--CCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHh--hcCCCccEEEC-cCC--CCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 333334456777777776 233233 11322223777 666 66 56677777777777777776
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.42 E-value=0.06 Score=41.53 Aligned_cols=42 Identities=10% Similarity=-0.153 Sum_probs=33.7
Q ss_pred EEEeeecCccccccccc---cccccccccceEEecc-eeeccCchhhhhh
Q psy18121 57 VIVVYFSRSGRKLKDFP---NSGGKYDLSDSVIVVY-FNITYPGLSMAIR 102 (109)
Q Consensus 57 lrlDL~S~N~~rl~elP---~~I~~F~~LksL~~~~-~l~~~P~~~g~l~ 102 (109)
..+|| |.| +|+.++ ..++.|..|++|++++ .+..+ ++++.++
T Consensus 173 ~~L~L-s~N--~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~ 218 (267)
T 3rw6_A 173 LSLNL-SNN--RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIK 218 (267)
T ss_dssp CEEEC-TTS--CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGT
T ss_pred CEEEC-CCC--CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcc
Confidence 34999 999 999876 5678999999999999 77777 4456555
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=92.15 E-value=0.023 Score=42.99 Aligned_cols=59 Identities=17% Similarity=-0.021 Sum_probs=44.1
Q ss_pred hceeEecCCCCCCCCC-----CCCCcccCCcEE-EeeecCcccccccc-ccccccc-----cccceEEecc-eeecc
Q psy18121 31 SGELNLSGRKLKDFPN-----SGGKYDLSDSVI-VVYFSRSGRKLKDF-PNSGGKY-----DLSDSVIVVY-FNITY 94 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~-----~~~~~dLsdtlr-lDL~S~N~~rl~el-P~~I~~F-----~~LksL~~~~-~l~~~ 94 (109)
=-.|.|+++++.+.+. .+ ..+...++ +|| |.| +|... |..++.+ ..|+.|++++ .+...
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~~L~~L~L-s~N--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAF--ANTPASVTSLNL-SGN--SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHH--HTCCTTCCEEEC-CSS--CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred ceEEEccCCCCChHHHHHHHHHH--HhCCCceeEEEC-cCC--CCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 4579999999999985 22 22443566 999 888 99988 4467775 9999999999 55433
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=90.33 E-value=0.22 Score=37.02 Aligned_cols=61 Identities=8% Similarity=0.042 Sum_probs=43.5
Q ss_pred hhhceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCccccccccccc-cccccccc-eEEecceeeccC
Q psy18121 29 HLSGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNS-GGKYDLSD-SVIVVYFNITYP 95 (109)
Q Consensus 29 ~kTGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~-I~~F~~Lk-sL~~~~~l~~~P 95 (109)
..=-.+.|++++++++|..+ +.=...++ +++ ++| ++.+|.. +..+..|+ .+.+.+.+.+++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~a--F~~~~~L~~l~l-~~n---i~~I~~~aF~~~~~L~~~l~l~~~l~~I~ 289 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFT--FAQKKYLLKIKL-PHN---LKTIGQRVFSNCGRLAGTLELPASVTAIE 289 (329)
T ss_dssp TTCCEEECTTBCCCEECTTT--TTTCTTCCEEEC-CTT---CCEECTTTTTTCTTCCEEEEECTTCCEEC
T ss_pred CCCeEEECCCCCcceecHhh--hhCCCCCCEEEC-Ccc---cceehHHHhhCChhccEEEEEcccceEEc
Confidence 34457889988999999875 33233344 888 777 8888874 57777788 888877666665
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=85.59 E-value=0.095 Score=39.81 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=5.3
Q ss_pred eeEecCCCCCC
Q psy18121 33 ELNLSGRKLKD 43 (109)
Q Consensus 33 vL~Ls~rkLke 43 (109)
.|.|+++++.+
T Consensus 203 ~L~L~~n~l~~ 213 (461)
T 1z7x_W 203 ALKLESCGVTS 213 (461)
T ss_dssp EEECTTSCCBT
T ss_pred EEEccCCCCcH
Confidence 44455554444
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=84.25 E-value=0.17 Score=38.38 Aligned_cols=57 Identities=14% Similarity=0.045 Sum_probs=34.6
Q ss_pred hhhceeEecCCCCCCCCC-CCCCcccCC---cEE-EeeecCcccccc-----ccccccccccccceEEecc
Q psy18121 29 HLSGELNLSGRKLKDFPN-SGGKYDLSD---SVI-VVYFSRSGRKLK-----DFPNSGGKYDLSDSVIVVY 89 (109)
Q Consensus 29 ~kTGvL~Ls~rkLkeFP~-~~~~~dLsd---tlr-lDL~S~N~~rl~-----elP~~I~~F~~LksL~~~~ 89 (109)
..=-+|.|+++++.+... .+. ..+.. .++ +|+ +.| ++. .+|..+..+..|++|++++
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~~L~~L~L-~~n--~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 122 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVL-QGLQTPSCKIQKLSL-QNC--CLTGAGCGVLSSTLRTLPTLQELHLSD 122 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHH-HTTCSTTCCCCEEEC-TTS--CCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred CCcCEEeCCCCcCChHHHHHHH-HHHhhCCCceeEEEc-cCC--CCCHHHHHHHHHHHccCCceeEEECCC
Confidence 444567777776655211 110 01221 355 888 777 777 5677788888888888887
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=83.10 E-value=0.063 Score=42.19 Aligned_cols=26 Identities=15% Similarity=-0.046 Sum_probs=11.8
Q ss_pred cccccccccccceEEecc-eeeccCch
Q psy18121 72 FPNSGGKYDLSDSVIVVY-FNITYPGL 97 (109)
Q Consensus 72 lP~~I~~F~~LksL~~~~-~l~~~P~~ 97 (109)
+|..+..+..|++|++++ .+..+|+.
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~l~~~ 238 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILELVGF 238 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGGGHHH
T ss_pred HHHHHhhCCCCcEEeccCccHHHHHHH
Confidence 333344445555555555 33334433
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=79.78 E-value=0.49 Score=37.10 Aligned_cols=60 Identities=8% Similarity=-0.040 Sum_probs=40.4
Q ss_pred hceeEecCCCCCC--CCCCCCCcccCCcEE-EeeecCccccccc--cccccccccccceEEecceeeccCc
Q psy18121 31 SGELNLSGRKLKD--FPNSGGKYDLSDSVI-VVYFSRSGRKLKD--FPNSGGKYDLSDSVIVVYFNITYPG 96 (109)
Q Consensus 31 TGvL~Ls~rkLke--FP~~~~~~dLsdtlr-lDL~S~N~~rl~e--lP~~I~~F~~LksL~~~~~l~~~P~ 96 (109)
=-.|.|+++++.+ +|..+.. + ..++ +|+ |.| +|++ +|..+..+..|+.|+++++-.+-.+
T Consensus 465 L~~L~L~~n~l~~~~~~~~~~~--~-~~L~~L~l-~~n--~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 465 VRWMLLGYVGESDEGLMEFSRG--C-PNLQKLEM-RGC--CFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp CCEEEECSCCSSHHHHHHHHTC--C-TTCCEEEE-ESC--CCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred ceEeeccCCCCCHHHHHHHHhc--C-cccCeeec-cCC--CCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 4578888888765 3333322 3 3455 999 888 7765 5666778899999999995554443
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=79.04 E-value=2.8 Score=30.97 Aligned_cols=58 Identities=12% Similarity=-0.027 Sum_probs=39.1
Q ss_pred ceeEecCCCCCCCCCCCCCcc-cCCcE-EEeeecCcccccccccc-ccccccccceEEecc-eeeccCc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYD-LSDSV-IVVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVY-FNITYPG 96 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~d-Lsdtl-rlDL~S~N~~rl~elP~-~I~~F~~LksL~~~~-~l~~~P~ 96 (109)
-.+.|.++ ++.+|..+ +. +..-. .+++ +.+ ++.+++ .+..+..|++|++++ .+.++|+
T Consensus 253 ~~l~l~~n-i~~I~~~a--F~~~~~L~~~l~l-~~~---l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRV--FSNCGRLAGTLEL-PAS---VTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CEEECCTT-CCEECTTT--TTTCTTCCEEEEE-CTT---CCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred CEEECCcc-cceehHHH--hhCChhccEEEEE-ccc---ceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 35677775 88888765 22 33333 4777 554 888875 567888888888865 7777765
No 144
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=74.73 E-value=2.4 Score=28.60 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=25.0
Q ss_pred hceeEecCCCCCCCCCCCCCcccCCcEE-EeeecCc
Q psy18121 31 SGELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRS 65 (109)
Q Consensus 31 TGvL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N 65 (109)
.-.|.|++++|..+|..+ ++--..++ +|| +.|
T Consensus 33 l~~L~Ls~N~l~~l~~~~--f~~l~~L~~L~L-~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGL--LDALPALRTAHL-GAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTT--GGGCTTCCEEEC-CSS
T ss_pred CCEEECCCCcCCccChhh--hhhccccCEEEe-cCC
Confidence 358999999999999976 43334555 999 888
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=69.71 E-value=3.7 Score=32.30 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCcccCCcEE-EeeecCccccccccccccccccccceEEecceeecc
Q psy18121 40 KLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPNSGGKYDLSDSVIVVYFNITY 94 (109)
Q Consensus 40 kLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~~I~~F~~LksL~~~~~l~~~ 94 (109)
.++.++..+ +.=...++ +|+ +.| +++.+|...-....|+++.+.+.+.++
T Consensus 167 ~l~~I~~~a--F~~c~~L~~l~l-~~n--~l~~I~~~aF~~~~L~~l~lp~~l~~I 217 (401)
T 4fdw_A 167 TLEQLKEDI--FYYCYNLKKADL-SKT--KITKLPASTFVYAGIEEVLLPVTLKEI 217 (401)
T ss_dssp TCCEECSST--TTTCTTCCEEEC-TTS--CCSEECTTTTTTCCCSEEECCTTCCEE
T ss_pred CccEehHHH--hhCcccCCeeec-CCC--cceEechhhEeecccCEEEeCCchhee
Confidence 444444433 22223344 666 666 666666644334555555554433333
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=64.26 E-value=0.98 Score=35.29 Aligned_cols=13 Identities=8% Similarity=-0.113 Sum_probs=7.3
Q ss_pred ccccccceEEecc
Q psy18121 77 GKYDLSDSVIVVY 89 (109)
Q Consensus 77 ~~F~~LksL~~~~ 89 (109)
..+..|++|++++
T Consensus 208 ~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 208 TRCPNLKSLKLNR 220 (594)
T ss_dssp HHCTTCCEEECCT
T ss_pred HhCCCCcEEecCC
Confidence 3445666666655
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=64.01 E-value=1 Score=35.10 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=6.4
Q ss_pred cccccccceEEecc
Q psy18121 76 GGKYDLSDSVIVVY 89 (109)
Q Consensus 76 I~~F~~LksL~~~~ 89 (109)
+.....|+.|++++
T Consensus 207 L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 207 LDRNRQLQELNVAY 220 (372)
T ss_dssp GGGCSCCCEEECCS
T ss_pred HhcCCCcCeEECCC
Confidence 33344444444444
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=63.70 E-value=0.69 Score=36.07 Aligned_cols=55 Identities=9% Similarity=-0.019 Sum_probs=29.9
Q ss_pred ceeEecCCCCCCCCCCC-CCc--ccCCcEE-EeeecCccccccc-----cccccccccccceEEecc
Q psy18121 32 GELNLSGRKLKDFPNSG-GKY--DLSDSVI-VVYFSRSGRKLKD-----FPNSGGKYDLSDSVIVVY 89 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~-~~~--dLsdtlr-lDL~S~N~~rl~e-----lP~~I~~F~~LksL~~~~ 89 (109)
-.|.|+++++.+.+... ... .-...++ +|| |.| +|++ ++..+.....|++|++++
T Consensus 129 ~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~L-s~n--~l~~~~~~~l~~~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL-SNN--PLTAAGVAVLMEGLAGNTSVTHLSLLH 192 (372)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEEC-CSS--CCHHHHHHHHHHHHHTCSSCCEEECTT
T ss_pred cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeC-CCC--CCChHHHHHHHHHHhcCCCcCEEeCCC
Confidence 46667776665433221 000 0012344 777 777 6655 444556667777777777
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=55.93 E-value=10 Score=29.74 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=33.8
Q ss_pred ceeEecCCCCCCCCCCCCCcccCCcEEEeeecCccccccccccc-cccccccceEEecceeecc
Q psy18121 32 GELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNS-GGKYDLSDSVIVVYFNITY 94 (109)
Q Consensus 32 GvL~Ls~rkLkeFP~~~~~~dLsdtlrlDL~S~N~~rl~elP~~-I~~F~~LksL~~~~~l~~~ 94 (109)
-.+.|++++++.+|..+ +.-+....+++ +.| ++.++.. +.....|+++.+.+.+.++
T Consensus 183 ~~l~l~~n~l~~I~~~a--F~~~~L~~l~l-p~~---l~~I~~~aF~~~~~L~~l~l~~~l~~I 240 (401)
T 4fdw_A 183 KKADLSKTKITKLPAST--FVYAGIEEVLL-PVT---LKEIGSQAFLKTSQLKTIEIPENVSTI 240 (401)
T ss_dssp CEEECTTSCCSEECTTT--TTTCCCSEEEC-CTT---CCEECTTTTTTCTTCCCEECCTTCCEE
T ss_pred CeeecCCCcceEechhh--EeecccCEEEe-CCc---hheehhhHhhCCCCCCEEecCCCccCc
Confidence 35677777888888766 33333333666 544 6777663 4556667777665544333
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=45.58 E-value=3.9 Score=28.33 Aligned_cols=15 Identities=0% Similarity=-0.259 Sum_probs=7.4
Q ss_pred ccccccccccceEEe
Q psy18121 73 PNSGGKYDLSDSVIV 87 (109)
Q Consensus 73 P~~I~~F~~LksL~~ 87 (109)
...+..-..|++|++
T Consensus 114 ~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 114 VEALQSNTSLIELRI 128 (185)
T ss_dssp HHGGGGCSSCCEEEC
T ss_pred HHHHHhCCCceEEEe
Confidence 344444445555555
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=45.28 E-value=4.9 Score=31.54 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=22.5
Q ss_pred cEE-EeeecCccccccc-----cccccccccccceEEecce
Q psy18121 56 SVI-VVYFSRSGRKLKD-----FPNSGGKYDLSDSVIVVYF 90 (109)
Q Consensus 56 tlr-lDL~S~N~~rl~e-----lP~~I~~F~~LksL~~~~~ 90 (109)
+++ +|| |.| .+.+ |+..+..+..|++|+++++
T Consensus 280 ~L~~LdL-s~n--~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 280 QLETMDI-SAG--VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GCSEEEC-CSS--CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCEEEC-CCC--CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 455 788 777 7766 5666667788888888764
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=40.03 E-value=3.1 Score=32.44 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=6.0
Q ss_pred ceeEecCCCCC
Q psy18121 32 GELNLSGRKLK 42 (109)
Q Consensus 32 GvL~Ls~rkLk 42 (109)
-.|.|+++.+.
T Consensus 108 ~~L~L~~~~~~ 118 (594)
T 2p1m_B 108 EEIRLKRMVVT 118 (594)
T ss_dssp CEEEEESCBCC
T ss_pred CeEEeeCcEEc
Confidence 45666665543
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=27.31 E-value=50 Score=23.85 Aligned_cols=31 Identities=3% Similarity=-0.054 Sum_probs=22.9
Q ss_pred EE-EeeecCcccccccccc-ccccccccceEEecce
Q psy18121 57 VI-VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVYF 90 (109)
Q Consensus 57 lr-lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~~ 90 (109)
++ +|+ |.+ .+++.=. .+..+..|++|++++|
T Consensus 63 L~~LDL-s~~--~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 63 IQAIDA-TDS--CIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp EEEEEE-ESC--CCCGGGGGGGTTCSCCCEEEEESC
T ss_pred EeEEeC-cCC--CccHHHHHHhcCCCCCCEEEeCCC
Confidence 45 999 887 6665322 3578899999999984
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=25.18 E-value=55 Score=24.22 Aligned_cols=33 Identities=18% Similarity=-0.048 Sum_probs=17.5
Q ss_pred EeeecCcccccccccc-ccccccccceEEecceeecc
Q psy18121 59 VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVYFNITY 94 (109)
Q Consensus 59 lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~~l~~~ 94 (109)
+++ ..| .++.++. .+.....|+++.+.+.+.++
T Consensus 291 i~l-~~~--~i~~I~~~aF~~c~~L~~i~lp~~l~~I 324 (379)
T 4h09_A 291 VVM-DNS--AIETLEPRVFMDCVKLSSVTLPTALKTI 324 (379)
T ss_dssp EEE-CCT--TCCEECTTTTTTCTTCCEEECCTTCCEE
T ss_pred ccc-ccc--ccceehhhhhcCCCCCCEEEcCccccEE
Confidence 555 545 5666655 34455566666665433333
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=23.88 E-value=67 Score=24.18 Aligned_cols=32 Identities=0% Similarity=-0.027 Sum_probs=14.9
Q ss_pred EeeecCcccccccccc-ccccccccceEEecceeecc
Q psy18121 59 VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVYFNITY 94 (109)
Q Consensus 59 lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~~l~~~ 94 (109)
+++ .+| ++.++. .+.....|+++.+.+.+.++
T Consensus 316 i~l-p~~---v~~I~~~aF~~C~~L~~i~ip~sv~~I 348 (394)
T 4gt6_A 316 IDI-PEG---ITQILDDAFAGCEQLERIAIPSSVTKI 348 (394)
T ss_dssp EEC-CTT---CCEECTTTTTTCTTCCEEEECTTCCBC
T ss_pred EEe-CCc---ccEehHhHhhCCCCCCEEEECcccCEE
Confidence 555 443 555544 23444555555554433333
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=23.50 E-value=54 Score=24.26 Aligned_cols=55 Identities=5% Similarity=-0.034 Sum_probs=35.1
Q ss_pred eeEecCCCCCCCCCCCCCcccCCcEE-EeeecCcccccccccc-ccccccccceEEecceeec
Q psy18121 33 ELNLSGRKLKDFPNSGGKYDLSDSVI-VVYFSRSGRKLKDFPN-SGGKYDLSDSVIVVYFNIT 93 (109)
Q Consensus 33 vL~Ls~rkLkeFP~~~~~~dLsdtlr-lDL~S~N~~rl~elP~-~I~~F~~LksL~~~~~l~~ 93 (109)
.+.+.+.+++.++..+ +.=...|+ +++ .+| ++.++. .+.....|+++.+...+.+
T Consensus 290 ~i~l~~~~i~~I~~~a--F~~c~~L~~i~l-p~~---l~~I~~~aF~~C~~L~~i~ip~~v~~ 346 (379)
T 4h09_A 290 KVVMDNSAIETLEPRV--FMDCVKLSSVTL-PTA---LKTIQVYAFKNCKALSTISYPKSITL 346 (379)
T ss_dssp EEEECCTTCCEECTTT--TTTCTTCCEEEC-CTT---CCEECTTTTTTCTTCCCCCCCTTCCE
T ss_pred cccccccccceehhhh--hcCCCCCCEEEc-Ccc---ccEEHHHHhhCCCCCCEEEECCccCE
Confidence 4556666777777655 22222344 888 666 888887 4667788998877554433
No 157
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=20.91 E-value=1.2e+02 Score=20.19 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhhhc------eeEecCCCCCCCCCCCCCcccCCcEEEee
Q psy18121 17 LARSLERILEEAHLSG------ELNLSGRKLKDFPNSGGKYDLSDSVIVVY 61 (109)
Q Consensus 17 ~~rslerhLE~A~kTG------vL~Ls~rkLkeFP~~~~~~dLsdtlrlDL 61 (109)
.-..+|+-+++.. | +|.-.++-|++ -.+++.|.+.|--.++|
T Consensus 43 TI~~LK~~I~~k~--Gip~~qQrLif~Gk~LkD-~~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 43 SVGDFKKVLSLQI--GTQPNKIVLQKGGSVLKD-HISLEDYEVHDQTNLEL 90 (93)
T ss_dssp BHHHHHHHHHHHH--TCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEE
T ss_pred HHHHHHHHHHHHh--CCCHHHEEEEeCCEEccC-cCCHHHcCCCCCCEEEE
Confidence 4467888887665 7 79999999998 46777899988777776
Done!