RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18121
(109 letters)
>gnl|CDD|219120 pfam06646, Mycoplasma_p37, High affinity transport system protein
p37. This family consists of several high affinity
transport system protein p37 sequences which are
specific to Mycoplasma species. The p37 gene is part of
an operon encoding two additional proteins which are
highly similar to components of the periplasmic
binding-protein-dependent transport systems of
Gram-negative bacteria.It has been suggested that p37 is
part of a homologous, high-affinity transport system in
M. hyorhinis, a Gram-positive bacterium.
Length = 331
Score = 27.9 bits (62), Expect = 1.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 74 NSGGKYDLSDSVIVVYFNITYPGLSMAI 101
NS GKY L + ++ +FN++YP L+
Sbjct: 181 NSAGKYLLPELLLKKHFNLSYPTLAEDK 208
>gnl|CDD|173250 PRK14789, PRK14789, lipoprotein signal peptidase; Provisional.
Length = 191
Score = 26.9 bits (59), Expect = 2.0
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 53 LSDSVIVVYFSRSGRKLKDFPNSGGKYDLSDSVIVVYFNITYPGLSMAIRKAQWL 107
L D V + Y +G FP+ GG + ++++ +TY + A ++W+
Sbjct: 40 LFDWVQLAYHENTGVAFGLFPDQGGVLSVGAGLVLLLLALTYQYILPA--DSRWI 92
>gnl|CDD|221000 pfam11145, DUF2921, Protein of unknown function (DUF2921). This
eukaryotic family of proteins has no known function.
Length = 871
Score = 26.3 bits (58), Expect = 4.2
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 11 SQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYFSRSG---- 66
+ + S RI+ + + N S + KY+ + R
Sbjct: 381 NTGPSNFPLSFRRIVPPSDMFNSFNRSLSNPRVV-----KYEYTKVERAGKLLRRNKPSG 435
Query: 67 --RKLKDFPNSGGKYDLSD 83
+ L +P + G Y LSD
Sbjct: 436 KKKSLVSYPGNLGMYSLSD 454
>gnl|CDD|239465 cd03367, Ribosomal_S23, S12-like family, 40S ribosomal protein
S23 subfamily; S23 is located at the interface of the
large and small ribosomal subunits of eukaryotes,
adjacent to the decoding center. It interacts with
domain III of the eukaryotic elongation factor 2
(eEF2), which catalyzes the translocation of the
growing peptidyl-tRNA to the P site to make room for
the next aminoacyl-tRNA at the A (acceptor) site.
Through its interaction with eEF2, S23 may play an
important role in translocation. Also members of this
subfamily are the archaeal 30S ribosomal S12 proteins.
Prokaryotic S12 is essential for maintenance of a
pretranslocation state and, together with S13,
functions as control element for the rRNA- and
tRNA-driven movements of translocation. S12 and S23 are
also implicated in translation accuracy. Antibiotics
such as streptomycin bind S12/S23 and cause the
ribosome to misread the genetic code.
Length = 115
Score = 25.3 bits (56), Expect = 5.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 38 GRKLKDF-PNSGG-KY-DLSDSVIVVYFSRSGRKLKDFP 73
G+K+ F P G + D +D V+V F R GR + D P
Sbjct: 53 GKKITAFVPGDGCLNFIDENDEVLVAGFGRKGRAVGDIP 91
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein;
Provisional.
Length = 202
Score = 25.5 bits (56), Expect = 5.5
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 29 HLSGELNLSGRKLKDFPN 46
L G+++ SG D PN
Sbjct: 90 RLPGDIDYSGTSFSDIPN 107
>gnl|CDD|119366 cd06549, GH18_trifunctional, GH18 domain of an uncharacterized
family of bacterial proteins, which share a common
three-domain architecture: an N-terminal glycosyl
hydrolase family 18 (GH18) domain, a glycosyl
transferase family 2 domain, and a C-terminal
polysaccharide deacetylase domain.
Length = 298
Score = 25.1 bits (55), Expect = 8.9
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 71 DFPNSGGKYDLSDSVIVVYFNITYP-GLSMAIRKAQW 106
N +D +I++ ++ Y G I W
Sbjct: 150 ADWNLKALARNADKLILMAYDEHYQGGAPGPIASQDW 186
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 25.1 bits (55), Expect = 9.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 61 YFSRSGRK-------LKDFPNSGGKYDLSDSVIVVYFNITYPGLSMAIRKAQWLIK 109
Y +RSGR KD + G+++ + + + TY G S I+KA IK
Sbjct: 146 YIARSGRPGPVHIDIPKDVTATLGEFEYPKEISLKTYKPTYKGNSRQIKKAAEAIK 201
>gnl|CDD|113558 pfam04792, LcrV, V antigen (LcrV) protein. Yersinia pestis, the
aetiologic agent of plague, secretes a set of
environmentally regulated, plasmid pCD1-encoded
virulence proteins termed Yops and V antigen (LcrV) by a
type III secretion mechanism. LcrV is a multifunctional
protein that has been shown to act at the level of
secretion control by binding the Ysc inner-gate protein
LcrG and to modulate the host immune response by
altering cytokine production. LcrV is also necessary for
full induction of low-calcium response (LCR) stimulon
virulence gene transcription. Family members are not
confined to Yersinia pestis.
Length = 326
Score = 25.1 bits (54), Expect = 9.7
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 24 ILEEAHLSGELNLSGRKLKDFPNS----GGKYDLSDSVIVVYFSRSGRKLKD 71
IL+ AH L +LK+F + G ++DL + +FS ++ D
Sbjct: 84 ILKAAHPDAPLGNGIERLKEFLEARRQPGAQWDLRAFLASAHFSLHADRIDD 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.378
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,634,756
Number of extensions: 488776
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 13
Length of query: 109
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 35
Effective length of database: 7,655,406
Effective search space: 267939210
Effective search space used: 267939210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)