RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy18121
         (109 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 62/158 (39%)

Query: 5   TNMNLTSQSQVHLA--------------RSLERI---LEEAHLSGELN-----LSGRKLK 42
           TN +L +  QV ++              +SL  +   L +A     L+      S RKLK
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415

Query: 43  --------------------------DFPNSGGKYDLSDSVIVVYFSRSGRKLKDFPNSG 76
                                     D   +   ++  D  I VY +  G  L+    S 
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475

Query: 77  GKYDLSDSVIV--VY------FNITY-----PGLSMAI 101
            +  + D +I   V       F  T+     PG +  +
Sbjct: 476 SE-RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512


>3edo_A Flavoprotein, putative Trp repressor binding protein;
          YP_193882.1, flavoprotein in complex with FMN,
          structural genomics; HET: MSE FMN; 1.20A {Lactobacillus
          acidophilus ncfm}
          Length = 151

 Score = 25.2 bits (55), Expect = 4.0
 Identities = 4/10 (40%), Positives = 8/10 (80%)

Query: 57 VIVVYFSRSG 66
           +++Y+S SG
Sbjct: 6  TLILYYSWSG 15


>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
          ligase; 2.80A {Shigella flexneri 2A}
          Length = 571

 Score = 25.3 bits (55), Expect = 5.4
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 4  LTNMNLTSQSQVHLARSLERILEEAHLSGELNLSGRKLKDFPNSGGK 50
               L  +++      L+  L     S EL L+   L   P++   
Sbjct: 36 WEKQALPGENRNEAVSLLKECLIN-QFS-ELQLNRLNLSSLPDNLPP 80


>3klb_A Putative flavoprotein; structural genomi center for structural
          genomics, JCSG, protein structure INI PSI-2; HET: FMN;
          1.75A {Bacteroides fragilis nctc 9343}
          Length = 162

 Score = 24.6 bits (53), Expect = 6.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 57 VIVVYFSRSG 66
          ++V YFS SG
Sbjct: 7  ILVAYFSCSG 16


>1mwq_A Hypothetical protein HI0828; YCII_HAEIN, structural genomic
          structure 2 function project, S2F, unknown function;
          HET: MSE 1PE; 0.99A {Haemophilus influenzae} SCOP:
          d.58.4.7
          Length = 101

 Score = 24.3 bits (53), Expect = 6.8
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 5/47 (10%)

Query: 16 HLARSLERILEEAHLSGELNLSGRKLKDFPNSGGKYDLSDSVIVVYF 62
          HLAR     L++      L  +G        +  +   + S ++  F
Sbjct: 27 HLAR-----LKQLQAENRLLTAGPNPAIDDENPSEAGFTGSTVIAQF 68


>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA
           helicase, acetyltransferase, GCN5 acetyltransferase;
           HET: ACO ADP; 2.35A {Escherichia coli K12}
          Length = 671

 Score = 24.6 bits (53), Expect = 8.9
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 9   LTSQSQVHLARSLERILEE---AHLSGELNLSGRK 40
           L   S++ L     R+ +    A L   L LSGRK
Sbjct: 601 LLQTSELALPALRGRLQKNASDAQLCTTLKLSGRK 635


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0759    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,705,892
Number of extensions: 93969
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 12
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)