RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18121
         (109 letters)



>d1pnoa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII)
           {Rhodospirillum rubrum [TaxId: 1085]}
          Length = 180

 Score = 23.6 bits (51), Expect = 5.4
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 6/28 (21%)

Query: 82  SDSVIVVYFNITYPGLSMAIRKAQWLIK 109
           +  VI+V      PG  MA+ +AQ  ++
Sbjct: 23  ASKVIIV------PGYGMAVAQAQHALR 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 406,312
Number of extensions: 17180
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 3
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)