BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18122
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
Query: 12 CLNGGV--EMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSN-F 68
C+N GV E C+C PGF G+ CE C+ + FG C CS CK V C + +
Sbjct: 205 CMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQ-EGCKSYVFCLPDPY 263
Query: 69 GCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDG--CDQYTG 110
GCSCATG++G QC E C +YG DCK +C C +G CD++ G
Sbjct: 264 GCSCATGWKGLQCNEACHPGFYGPDCKLRC-SCNNGEMCDRFQG 306
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 9 SIECLNGGV-EMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSN 67
S C NGG C+C PG G++CEI SK P C+ C
Sbjct: 216 STTCFNGGTCFYPGKCICPPGLEGEQCEI---------------SKCPQPCRNGGKCIGK 260
Query: 68 FGCSCATGYQGEQC 81
C C+ GYQG+ C
Sbjct: 261 SKCKCSKGYQGDLC 274
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 12 CLNGGVEMDSM----CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSN 67
CLNGG+ D + C C GF GK CE+ N +C C + S
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGAD---------SK 106
Query: 68 FGCSCATGYQ 77
CSC TGY+
Sbjct: 107 VLCSCTTGYR 116
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 13/81 (16%)
Query: 2 TSNTNENSIECLNGGVEMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGM 61
SN +N CL+ E C+C PG+ G CE+ D C+ SP G
Sbjct: 49 VSNPCQNDATCLDQIGEF--QCICMPGYEGVHCEVNTDE----------CASSPCLHNGR 96
Query: 62 VLCTSN-FGCSCATGYQGEQC 81
L N F C C TG+ G C
Sbjct: 97 CLDKINEFQCECPTGFTGHLC 117
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 12 CLNGGV---EMDSM-CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSN 67
CLNGG+ +++S C C GF GK CE+ N +C C + S
Sbjct: 56 CLNGGLCKXDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGAD---------SK 106
Query: 68 FGCSCATGYQ 77
CSC TGY+
Sbjct: 107 VLCSCTTGYR 116
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 13/81 (16%)
Query: 2 TSNTNENSIECLNGGVEMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGM 61
SN +N CL+ E C+C PG+ G CE+ D C+ SP G
Sbjct: 47 VSNPCQNDATCLDQIGEF--QCICMPGYEGVHCEVNTDE----------CASSPCLHNGR 94
Query: 62 VLCTSN-FGCSCATGYQGEQC 81
L N F C C TG+ G C
Sbjct: 95 CLDKINEFQCECPTGFTGHLC 115
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
pdb|4H3E|B Chain B, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
Length = 241
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 32 KKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGEQCLEHCPEDYY 90
K + NNFG + LC N+ + ++ TSN GC G + ++ YY
Sbjct: 151 KDAFVQAGVNNFGSGWTWLCVDPSNKNQLVIDNTSNAGCPLTKGLRPVLAVDVWEHAYY 209
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 11 ECLNGGV------EMDSMCLCTPGFAGKKCEI 36
C NGG D +C C GFAGK CEI
Sbjct: 55 RCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,269,676
Number of Sequences: 62578
Number of extensions: 264545
Number of successful extensions: 725
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 152
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)