RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18122
(188 letters)
>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion].
Length = 386
Score = 30.5 bits (69), Expect = 0.48
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 70 CSCATGYQGEQCLEHCPE---DYYGADCKQKCGECIDGCD 106
C ++ CP G +C CG CID CD
Sbjct: 220 CKKVCPEPIPLWVQVCPAGIDIRDGLEC-IGCGRCIDACD 258
>gnl|CDD|165396 PHA03124, PHA03124, dUTPase; Provisional.
Length = 418
Score = 29.1 bits (65), Expect = 1.3
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 41 NNFGHKCSMLCSKSPNQCKGMVLCTSNFGCS-CATGYQGE-QCLEHCPEDYYGAD 93
F H L S P+ + C NFGC C Y+ +CLE P D D
Sbjct: 164 EGFDHCIESLASIPPDILHAKIDCPGNFGCMGCKAFYRRLFECLEEQPLDAACND 218
>gnl|CDD|220920 pfam10977, DUF2797, Protein of unknown function (DUF2797). This
family of proteins has no known function.
Length = 233
Score = 28.8 bits (65), Expect = 1.5
Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 11/48 (22%)
Query: 93 DCKQK---CGECI---DGCDQYTGVCRGGCTTPYLIRPYCKQPHS-YL 133
C K C CI + C G C P +C QPH YL
Sbjct: 32 PCFSKLAQCDLCIMKPETCH----YHLGTCRDPEWGEAHCMQPHVVYL 75
>gnl|CDD|206686 cd01899, Ygr210, Ygr210 GTPase. Ygr210 is a member of Obg-like
family and present in archaea and fungi. They are
characterized by a distinct glycine-rich motif
immediately following the Walker B motif. The Ygr210 and
YyaF/YchF subfamilies appear to form one major branch of
the Obg-like family. Among eukaryotes, the Ygr210
subfamily is represented only in fungi. These fungal
proteins form a tight cluster with their archaeal
orthologs, which suggests the possibility of horizontal
transfer from archaea to fungi.
Length = 318
Score = 28.3 bits (64), Expect = 2.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 85 CPEDYYGADCKQKCGECIDGC 105
CP G C + G+CIDG
Sbjct: 46 CPCKELGVSCNPRYGKCIDGK 66
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is
found in Plasmodium Duffy binding proteins. Plasmodium
vivax and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 28.1 bits (63), Expect = 2.9
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 83 EHCPEDYYGADCKQKCGECIDGCDQY 108
+ C E C +KC +C + C +Y
Sbjct: 210 KKCKEKKCNKYCSKKCTKCKNACKKY 235
>gnl|CDD|233993 TIGR02745, ccoG_rdxA_fixG, cytochrome c oxidase accessory protein
FixG. Member of this ferredoxin-like protein family are
found exclusively in species with an operon encoding the
cbb3 type of cytochrome c oxidase (cco-cbb3), and near
the cco-cbb3 operon in about half the cases. The
cco-cbb3 is found in a variety of proteobacteria and
almost nowhere else, and is associated with oxygen use
under microaerobic conditions. Some (but not all) of
these proteobacteria are also nitrogen-fixing, hence the
gene symbol fixG. FixG was shown essential for
functional cco-cbb3 expression in Bradyrhizobium
japonicum.
Length = 434
Score = 28.0 bits (63), Expect = 3.5
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 12/37 (32%)
Query: 79 EQCLEHCPEDYYGAD--------CKQKCGECIDGCDQ 107
C++ CP G D C CG CID CD
Sbjct: 237 NLCVQVCPT---GIDIRDGLQLECIN-CGLCIDACDD 269
>gnl|CDD|227405 COG5073, VID24, Vacuolar import and degradation protein
[Intracellular trafficking and secretion].
Length = 272
Score = 27.5 bits (61), Expect = 4.5
Identities = 10/53 (18%), Positives = 16/53 (30%)
Query: 24 LCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGY 76
C+ K + HK S + G + + FG +GY
Sbjct: 41 SCSLNIVFHKHKKVETYYMIRHKNKRRLFSSYTRRSGFLRNGAQFGGVQISGY 93
>gnl|CDD|237846 PRK14876, PRK14876, conjugal transfer mating pair stabilization
protein TraN; Provisional.
Length = 928
Score = 27.5 bits (61), Expect = 5.9
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 14/52 (26%)
Query: 72 CATGYQGEQCLEHCPEDYYGA--DCKQ-----KCG----ECIDGCDQYTGVC 112
C T QG HCP + G C++ +CG +CIDG +G C
Sbjct: 462 CWTDPQGVT---HCPVNDGGNLNSCQKYEENPQCGFISSKCIDGAQGSSGTC 510
>gnl|CDD|144855 pfam01414, DSL, Delta serrate ligand.
Length = 63
Score = 25.0 bits (55), Expect = 7.3
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 35 EIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGEQC 81
+ CD N +G C+ C + G C N C G+ G C
Sbjct: 18 RVTCDENYYGEGCNKFCRPRDDF-FGHYTCDENGNKRCLNGWMGPYC 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.449
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,543,353
Number of extensions: 699594
Number of successful extensions: 531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 48
Length of query: 188
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 97
Effective length of database: 6,901,388
Effective search space: 669434636
Effective search space used: 669434636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)