RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18122
(188 letters)
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 64.3 bits (156), Expect = 1e-12
Identities = 43/110 (39%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 6 NENSIECLNGGV--EMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVL 63
N C+N GV E C+C PGF G+ CE C+ + FG C CS CK V
Sbjct: 199 NHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCS-GQEGCKSYVF 257
Query: 64 CTSN-FGCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVC 112
C + +GCSCATG++G QC E C +YG DCK +C C
Sbjct: 258 CLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGC 307
Score = 55.5 bits (133), Expect = 1e-09
Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 8/118 (6%)
Query: 3 SNTNENSIECLNGGVEMDS--MCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKG 60
C + + C C G+ G +C C +G C + C C
Sbjct: 243 KERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRC-----SCNN 297
Query: 61 MVLCTSNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGGCTT 118
+C GC C+ G+QG QC ++ +C+
Sbjct: 298 GEMCDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDH-IEVNSGKFNPICKASGWP 354
Score = 38.1 bits (88), Expect = 0.001
Identities = 20/114 (17%), Positives = 30/114 (26%), Gaps = 10/114 (8%)
Query: 7 ENSIECLNGGVEMDS-MCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCT 65
+ C NG + CLC+PG+ G +CE + N K +C
Sbjct: 290 KLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPIC- 348
Query: 66 SNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGGCTTP 119
A+G+ E G K + P
Sbjct: 349 ------KASGWPLPTNEEMTLVKPDGTVLHPKD--FNHTDHFSVAIFTIHRILP 394
Score = 37.4 bits (86), Expect = 0.002
Identities = 16/115 (13%), Positives = 32/115 (27%), Gaps = 8/115 (6%)
Query: 1 MTSNTNEN-SIECLNGGVEMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCK 59
MT + +N +I ++ + + G + +
Sbjct: 109 MTVDKGDNVNISFKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVY- 167
Query: 60 GMVLCTSNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDG--CDQYTGVC 112
G + T + C +G +C C C++ C + TG C
Sbjct: 168 ----SARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGEC 218
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 51.6 bits (123), Expect = 3e-08
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 7 ENSIECLNG-GVEMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCT 65
NS C NG G +C C PG+ G +CE + + + C C
Sbjct: 443 PNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECL 502
Query: 66 SNFGCSCATGYQGEQCLEHCPEDYYGADCKQKC-----GECIDG 104
C C + G+ ++C D + + G+C G
Sbjct: 503 CGQ-CVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCG 545
Score = 48.2 bits (114), Expect = 4e-07
Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 8/98 (8%)
Query: 8 NSIECLNGGVEMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSN 67
C G CLC + G C + +LCS +G C
Sbjct: 532 KGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCS-----GRGK--CECG 584
Query: 68 FGCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDGC 105
G G+ C E CP K++C EC
Sbjct: 585 SCVCIQPGSYGDTC-EKCPTCPDACTFKKECVECKKFD 621
Score = 46.6 bits (110), Expect = 2e-06
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 9/102 (8%)
Query: 6 NENSIECLNGGVEMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCT 65
E C G + C+C GK C+ ++F C G C+
Sbjct: 489 REGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRY-----KGEMCSGHGQCS 543
Query: 66 SNFGCSCATGYQGEQCLEHCPEDYYGADCKQKC---GECIDG 104
C C + + G C D + C G+C G
Sbjct: 544 CG-DCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECG 584
Score = 35.4 bits (81), Expect = 0.007
Identities = 17/101 (16%), Positives = 23/101 (22%), Gaps = 15/101 (14%)
Query: 20 DSMCLCTPGFAGKKC---EIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGY 76
S + GF CD + C C G+
Sbjct: 412 KSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNG-----TFECGVCRCGPGW 466
Query: 77 QGEQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGGCT 117
G QC C E+ Y + +C VC
Sbjct: 467 LGSQC--ECSEEDYRPSQQDECSPREGQP-----VCSQRGE 500
Score = 35.4 bits (81), Expect = 0.009
Identities = 17/98 (17%), Positives = 25/98 (25%), Gaps = 12/98 (12%)
Query: 6 NENSIECLNGGVEMDSMCLCT-PGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLC 64
+ N + C G C+C PG G CE C C+ +
Sbjct: 569 SSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPT-------CPDACTFKKECVECKKFD 621
Query: 65 T----SNFGCSCATGYQGEQCLEHCPEDYYGADCKQKC 98
C+ + E E +C K
Sbjct: 622 RGALHDENTCNRYCRDEIESVKELKDTGKDAVNCTYKN 659
Score = 28.5 bits (63), Expect = 1.3
Identities = 18/121 (14%), Positives = 27/121 (22%), Gaps = 15/121 (12%)
Query: 12 CLNGGVEMDS-MCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGC 70
CLN V C+ I + + P K ++ F C
Sbjct: 374 CLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDC 433
Query: 71 SCATGYQGEQCLEH--------------CPEDYYGADCKQKCGECIDGCDQYTGVCRGGC 116
CA Q E C + G+ C+ + G
Sbjct: 434 DCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQP 493
Query: 117 T 117
Sbjct: 494 V 494
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 43.5 bits (102), Expect = 2e-05
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 17/106 (16%)
Query: 6 NENSIECLNGGVEMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCT 65
N +EC G ++C C G+ C+ C P+ C + C
Sbjct: 562 NPRRVECSGRGRCRCNVCECHSGYQLPLCQE--------------CPGCPSPCGKYISCA 607
Query: 66 SNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCG-ECIDGCDQYTG 110
G G+ C CP + + + D +
Sbjct: 608 E--CLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVA 651
Score = 42.4 bits (99), Expect = 4e-05
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 7 ENSIECLNGGVEMDSMCLCTPGFAGKKCEIPCD-RNNFGHKCSMLCSKSPNQCKGMVLCT 65
+ C G +C C G+ GK CE R++ + S + C G+ C
Sbjct: 432 RDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCV 491
Query: 66 SNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGE---CIDGCDQYTGVCR 113
C C T + + + +C++ G+ + G CR
Sbjct: 492 CGQ-CLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCR 541
Score = 40.1 bits (93), Expect = 2e-04
Identities = 24/121 (19%), Positives = 34/121 (28%), Gaps = 27/121 (22%)
Query: 12 CLNGGVEMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCS 71
G+ C C PGF G C+ + + CS C N C
Sbjct: 529 GPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGR-------CRCNV-CE 580
Query: 72 CATGYQGEQCLE------------------HCPEDYYGADCKQKC-GECIDGCDQYTGVC 112
C +GYQ C E + +G +C C G + C
Sbjct: 581 CHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTC 640
Query: 113 R 113
+
Sbjct: 641 K 641
Score = 33.9 bits (77), Expect = 0.025
Identities = 25/109 (22%), Positives = 32/109 (29%), Gaps = 17/109 (15%)
Query: 6 NENSIECLNGGVEMDSMCLCTPGFAGKKCEI----PCDRNNFGHKCSMLCSKSPNQCKGM 61
+ NSI C G + CLC K CD N +C G
Sbjct: 478 DNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCG-----GPGR 532
Query: 62 VLCTSNFGCSCATGYQGEQCLEHCPEDYYGADCKQKC-----GECIDGC 105
LC C C G++G C C G ++ G C
Sbjct: 533 GLCFCGK-CRCHPGFEGSAC--QCERTTEGCLNPRRVECSGRGRCRCNV 578
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 41.0 bits (95), Expect = 1e-04
Identities = 19/138 (13%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 25 CTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGY--QGEQCL 82
C + +C C + + + + C+ + N Y +C+
Sbjct: 228 CRNFYLDGRCVETCPPPYYHFQDW--RCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCI 285
Query: 83 EHCPEDYYGADCKQKCGECIDGCDQYTGVCRGGCTTPYLIRPYCKQPHSYLEESPRVLDS 142
CP Y C C+ C + + G T + + + + S +
Sbjct: 286 PECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIR 345
Query: 143 SYNAVNLQIDLTTSNIER 160
N + +++ IE
Sbjct: 346 GGNNLAAELEANLGLIEE 363
Score = 27.9 bits (61), Expect = 2.1
Identities = 18/118 (15%), Positives = 29/118 (24%), Gaps = 24/118 (20%)
Query: 23 CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQ----- 77
+ C+ C H C+ ++C +C+
Sbjct: 177 QFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSEC----------LGNCSQPDDPTKCV 226
Query: 78 -------GEQCLEHCPEDYYGAD--CKQKCGECIDGCDQYTGVCRGGCTTPYLIRPYC 126
+C+E CP YY C D + R GC + C
Sbjct: 227 ACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKC 284
Score = 26.0 bits (56), Expect = 9.8
Identities = 10/74 (13%), Positives = 17/74 (22%), Gaps = 1/74 (1%)
Query: 41 NNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGE 100
+ +C +C + N G + C + CP C +
Sbjct: 149 KDDNEECGDICPGTAKGKTNCPATVIN-GQFVERCWTHSHCQKVCPTICKSHGCTAEGLC 207
Query: 101 CIDGCDQYTGVCRG 114
C C
Sbjct: 208 CHSECLGNCSQPDD 221
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 37.7 bits (88), Expect = 5e-04
Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 8 NSIECLNGGVEMDSM----CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKG--M 61
CLNGG+ D + C C GF GK CE+ C+ +CK
Sbjct: 52 EPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDAT-----------CNIKNGRCKQFCK 100
Query: 62 VLCTSNFGCSCATGYQGEQCLEHCPE 87
S CSC TGY+ + C
Sbjct: 101 TGADSKVLCSCTTGYRLAPDQKSCKP 126
Score = 26.5 bits (59), Expect = 3.7
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 13/94 (13%)
Query: 23 CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGM-VLCTSNFGCSCATGYQGEQC 81
K + D+ C +P G+ +++ C C G++G+ C
Sbjct: 33 ENTEKTNEFWKQYVDGDQ----------CEPNPCLNGGLCKDDINSYECWCQVGFEGKNC 82
Query: 82 LEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGG 115
+ CKQ C + C G
Sbjct: 83 ELDATCNIKNGRCKQFC--KTGADSKVLCSCTTG 114
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 37.4 bits (87), Expect = 7e-04
Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 18/120 (15%)
Query: 12 CLNGGVEMDSM------CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCT 65
C NGG+ + + C C GF C + + + + +PN C C
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCE 67
Query: 66 S----------NFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGG 115
+ C C G+ G C +H + C + G C D Y+ C G
Sbjct: 68 ISEAYRGDTFIGYVCKCPRGFNGIHC-QHNINECEVEPC-KNGGICTDLVANYSCECPGE 125
Score = 28.9 bits (65), Expect = 0.53
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 15/62 (24%)
Query: 23 CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCT---SNFGCSCATGYQGE 79
C C GF G C+ + C P CK +CT +N+ C C + G
Sbjct: 82 CKCPRGFNGIHCQHNINE----------CEVEP--CKNGGICTDLVANYSCECPGEFMGR 129
Query: 80 QC 81
C
Sbjct: 130 NC 131
Score = 28.5 bits (64), Expect = 0.79
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 12 CLNGGVEMDSM----CLCTPGFAGKKCEIPCD 39
C NGG+ D + C C F G+ C+
Sbjct: 105 CKNGGICTDLVANYSCECPGEFMGRNCQYKGG 136
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 38.3 bits (89), Expect = 8e-04
Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 16/79 (20%)
Query: 4 NTNENSIECLNGGVEMDS-MCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMV 62
++ C NGG + C C+ G+ G C P C
Sbjct: 243 EISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVC---------------EPGCGAHG 287
Query: 63 LCTSNFGCSCATGYQGEQC 81
C C C G+ G C
Sbjct: 288 TCHEPNKCQCQEGWHGRHC 306
Score = 36.4 bits (84), Expect = 0.003
Identities = 25/110 (22%), Positives = 33/110 (30%), Gaps = 35/110 (31%)
Query: 12 CLNGGVEMDS-MCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGC 70
C+NGG+ + C+C PGF G C+ C C C
Sbjct: 187 CMNGGLCVTPGFCICPPGFYGVNCDKAN---------------CSTTCFNGGTCFYPGKC 231
Query: 71 SCATGYQGEQCLE-------------------HCPEDYYGADCKQKCGEC 101
C G +GEQC C + Y G C + E
Sbjct: 232 ICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEP 281
Score = 34.8 bits (80), Expect = 0.011
Identities = 15/95 (15%), Positives = 22/95 (23%), Gaps = 34/95 (35%)
Query: 23 CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGEQCL 82
K C+ P C+ C C C G+ G C
Sbjct: 135 KTPQNAIFFKTCQQAE---------------CPGGCRNGGFCNERRICECPDGFHGPHCE 179
Query: 83 E-------------------HCPEDYYGADCKQKC 98
+ CP +YG +C +
Sbjct: 180 KALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKAN 214
Score = 26.0 bits (57), Expect = 9.7
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 12 CLNGGVEMDS-MCLCTPGFAGKKCEIPCD 39
C G + C C G+ G+ C +
Sbjct: 283 CGAHGTCHEPNKCQCQEGWHGRHCNKRYE 311
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 38.1 bits (88), Expect = 0.001
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 18/107 (16%)
Query: 23 CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFG-------CSCATG 75
C C G++C++ C + C + C C
Sbjct: 409 CRCKLHVEGERCDV-CKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRL 467
Query: 76 YQGEQCLEHCPEDYYGADCKQK-CGECI--------DGCDQYTGVCR 113
G++C + C ++G C C + C + +G C
Sbjct: 468 VTGQRC-DQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCS 513
Score = 32.4 bits (73), Expect = 0.078
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 23 CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVL------CTSNFGCSCATGY 76
C+C G CE+ D ++ N CK C + ATG
Sbjct: 281 CMCRHNTKGLNCELCMD-FYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGN 339
Query: 77 QGEQCLEHCPEDYYGADCKQKC 98
++C + G +C+Q
Sbjct: 340 VSGGVCDNCQHNTMGRNCEQCK 361
Score = 29.3 bits (65), Expect = 0.82
Identities = 16/95 (16%), Positives = 18/95 (18%), Gaps = 15/95 (15%)
Query: 20 DSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGE 79
D G C N G C F
Sbjct: 330 DMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPF-------------YFQHPERDIRDPN 376
Query: 80 QCLEHCPEDYYGADCKQKCGECIDG-CDQYTGVCR 113
C C D G++ C D G CR
Sbjct: 377 LCEP-CTCDPAGSENGGICDGYTDFSVGLIAGQCR 410
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 36.2 bits (84), Expect = 0.001
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 13/87 (14%)
Query: 6 NENSIECLNGGVEMDSM----CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGM 61
+ + C G +D + C C G+ G+ C+ N CS C
Sbjct: 16 HPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLN--------CSLDNGGCTHY 67
Query: 62 VLCTSN-FGCSCATGYQGEQCLEHCPE 87
L CSCA GY+ L C
Sbjct: 68 CLEEVGWRRCSCAPGYKLGDDLLQCHP 94
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 37.8 bits (88), Expect = 0.001
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 18/95 (18%)
Query: 12 CLNGGVEMDSM----CLCTPGFAGKKCEI---PCDRNNFGHKCSMLCSKSPNQCKGMVLC 64
CL+ G DS+ C C+PG+ G CE+ C C C
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTD-GCQHFCLPGQE-------- 63
Query: 65 TSNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCG 99
++ CSCA GY+ + + C A
Sbjct: 64 --SYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSE 96
Score = 31.6 bits (72), Expect = 0.11
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 8/80 (10%)
Query: 54 SPNQCKGMVLCTSNFG---CSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDGCDQYTG 110
C C + C+C+ GY+G C E ++ C C
Sbjct: 9 ISQPCLHNGSCQDSIWGYTCTCSPGYEGSNC-----ELAKNECHPERTDGCQHFCLPGQE 63
Query: 111 VCRGGCTTPYLIRPYCKQPH 130
C Y + KQ
Sbjct: 64 SYTCSCAQGYRLGEDHKQCV 83
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 35.3 bits (82), Expect = 0.003
Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 18/83 (21%)
Query: 12 CLNGGVEMDSM----CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCT-- 65
C N G D + C C GF GK CE+ + CS C C
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKL---------CSLDNGDCDQ--FCHEE 98
Query: 66 -SNFGCSCATGYQGEQCLEHCPE 87
++ CSCA GY + C
Sbjct: 99 QNSVVCSCARGYTLADNGKACIP 121
Score = 28.8 bits (65), Expect = 0.53
Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 20/112 (17%)
Query: 11 ECLNGGVEMD----SMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCT- 65
EC+ + D+ C SP Q +G C
Sbjct: 11 ECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQ----------CETSPCQNQGK--CKD 58
Query: 66 --SNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGG 115
+ C+C G++G+ C E D C + + C G
Sbjct: 59 GLGEYTCTCLEGFEGKNC-ELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARG 109
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 35.0 bits (81), Expect = 0.004
Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 19/83 (22%)
Query: 12 CLNGGVEMDSM----CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMV-LCT- 65
C NGG D + C C P F G+ CE D N+ G C+
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD----------QLICVNENGGCEQYCSD 104
Query: 66 ---SNFGCSCATGYQGEQCLEHC 85
+ C C GY C
Sbjct: 105 HTGTKRSCRCHEGYSLLADGVSC 127
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 36.0 bits (82), Expect = 0.006
Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 5/162 (3%)
Query: 11 ECLNG--GVEMDSMCL-CTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSN 67
ECL + + C+ C + +C C + + + S Q C ++
Sbjct: 211 ECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQ-DLHHKCKNS 269
Query: 68 FGCSCATGY-QGEQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGGCTTPYLIRPYC 126
C +C+ CP Y C C+ C + + G T +
Sbjct: 270 RRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQE 329
Query: 127 KQPHSYLEESPRVLDSSYNAVNLQIDLTTSNIERSYDHTKFY 168
+ + + S + N + +++ IE + K
Sbjct: 330 LRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIR 371
Score = 33.7 bits (76), Expect = 0.035
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 8/79 (10%)
Query: 41 NNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGE 100
+ +C +C + N G + C + CP C +
Sbjct: 149 KDDNEECGDICPGTAKGKTNCPATVIN-GQFVERCWTHSHCQKVCPTICKSHGCTAEGLC 207
Query: 101 CIDGCDQYTGVCRGGCTTP 119
C C G C+ P
Sbjct: 208 CHSECL-------GNCSQP 219
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 35.7 bits (81), Expect = 0.006
Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 16/106 (15%)
Query: 19 MDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKS----PNQCKGMVLCTSNFGCSCAT 74
+ + F + C + KC C +S +QC+ C
Sbjct: 35 ITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSF--------CEPLF 86
Query: 75 GYQGEQCLEHCPEDYYGADCKQKCGECIDGCDQ--YTGVCRGGCTT 118
+ +CL C Y K G+C + C C
Sbjct: 87 PKKSYECLTSCEFLKYI--LLVKQGDCPAPEKASGFAAACVESCEV 130
Score = 26.8 bits (58), Expect = 5.5
Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 3/70 (4%)
Query: 69 GCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGGCTTPYLIRPYCKQ 128
+ +Q L C + C C + D C+ C + + Y
Sbjct: 38 ISAFFQHFQNNGSLVWCQNHKQCSKCL---EPCKESGDLRKHQCQSFCEPLFPKKSYECL 94
Query: 129 PHSYLEESPR 138
+
Sbjct: 95 TSCEFLKYIL 104
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 34.3 bits (79), Expect = 0.010
Identities = 21/107 (19%), Positives = 30/107 (28%), Gaps = 23/107 (21%)
Query: 12 CLNGGVEMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCS 71
+G +E S C + G C C + G C N +
Sbjct: 8 HHHGSIEGRSAVTCDDYYYGFGCNKFCR--------------PRDDFFGHYACDQNGNKT 53
Query: 72 CATGYQGEQCLEHCPEDYYGADCKQKCGECIDGC-DQYTGVCRGGCT 117
C G+ G +C A C+Q C C C+ G
Sbjct: 54 CMEGWMGPECNR--------AICRQGCSPKHGSCKLPGDCRCQYGWQ 92
Score = 28.9 bits (65), Expect = 0.78
Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 19/106 (17%)
Query: 12 CLNGGV-EMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGC 70
G ++ C C G+ G C+ C P G +C + C
Sbjct: 73 SPKHGSCKLPGDCRCQYGWQGLYCDK--------------CIPHPGCVHG--ICNEPWQC 116
Query: 71 SCATGYQGEQCLEHCPEDYYGADCKQKCGECID-GCDQYTGVCRGG 115
C T + G+ C + C G C + G D+Y C G
Sbjct: 117 LCETNWGGQLCDKDLNYCGTHQPC-LNGGTCSNTGPDKYQCSCPEG 161
Score = 27.3 bits (61), Expect = 2.6
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 12 CLNGGVEMDS-MCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGC 70
G+ + CLC + G+ C+ + C N + C
Sbjct: 104 GCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCL-------NGGTCSNTGPDKYQC 156
Query: 71 SCATGYQGEQC 81
SC GY G C
Sbjct: 157 SCPEGYSGPNC 167
Score = 26.2 bits (58), Expect = 5.4
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 50 LCSKSPNQCKGMVLCTSNFGCSCATGYQGEQCLEHC--PEDYYGADCKQKCGECI 102
+ + G +C Y G C + C +D++G + G
Sbjct: 1 MRGSHHHHHHGS--IEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKT 53
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 34.4 bits (78), Expect = 0.015
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 14/114 (12%)
Query: 21 SMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVL-CTSNFGC-SCATGYQG 78
+ + +C+ C C+ +C G ++ C +C Y
Sbjct: 168 NNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYA 227
Query: 79 EQCLEHCPEDYY------------GADCKQKCGECIDGCDQYTGVCRGGCTTPY 120
C+ CP + Y A+ +G + G C C + +
Sbjct: 228 GVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGF 281
Score = 29.8 bits (66), Expect = 0.57
Identities = 18/137 (13%), Positives = 40/137 (29%), Gaps = 5/137 (3%)
Query: 25 CTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGEQCLEH 84
C + C C N + + + C ++ S+ S +C++
Sbjct: 221 CRHYYYAGVCVPACPPNTYRFEGW--RCVDRDFCANILSAESS--DSEGFVIHDGECMQE 276
Query: 85 CPEDYYG-ADCKQKCGECIDGCDQYTGVCRGGCTTPYLIRPYCKQPHSYLEESPRVLDSS 143
CP + C C C + + T + Q + + + +
Sbjct: 277 CPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRR 336
Query: 144 YNAVNLQIDLTTSNIER 160
N + +++ IE
Sbjct: 337 GNNIASELENFMGLIEV 353
Score = 27.9 bits (61), Expect = 2.6
Identities = 7/63 (11%), Positives = 15/63 (23%)
Query: 45 HKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDG 104
+ C+ + T + C C + + + EC+
Sbjct: 149 GDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGS 208
Query: 105 CDQ 107
C
Sbjct: 209 CSA 211
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 34.5 bits (78), Expect = 0.017
Identities = 17/101 (16%), Positives = 23/101 (22%), Gaps = 4/101 (3%)
Query: 23 CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGC-SCATGYQGEQC 81
C C G S C NQC C C C
Sbjct: 180 EENCQKLTKIICAQQCSGRCRGKSPSDCCH---NQCAAGCTGPRESDCLVCRKFRDEATC 236
Query: 82 LEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGGCTTPYLI 122
+ CP + +G + C C Y++
Sbjct: 237 KDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVV 277
Score = 27.6 bits (60), Expect = 3.2
Identities = 14/117 (11%), Positives = 26/117 (22%), Gaps = 3/117 (2%)
Query: 36 IPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGEQCLEHCPEDYYGADCK 95
+ C + C C N + G C++ CP +Y D
Sbjct: 225 LVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGAT---CVKKCPRNYVVTDHG 281
Query: 96 QKCGECIDGCDQYTGVCRGGCTTPYLIRPYCKQPHSYLEESPRVLDSSYNAVNLQID 152
C + C E + ++ N + +
Sbjct: 282 SCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNC 338
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 33.6 bits (77), Expect = 0.022
Identities = 24/113 (21%), Positives = 30/113 (26%), Gaps = 24/113 (21%)
Query: 12 CLNGGVEMDSM----CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGM-VLCTS 66
C N G D + C C GF GK CE+ + CS C +
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKL---------CSLDNGDCDQFCHEEQN 100
Query: 67 NFGCSCATGYQGEQCLEHCPEDYYGADCK----QKCGECIDGCDQYTGVCRGG 115
+ CSCA GY + C K G
Sbjct: 101 SVVCSCARGYTLADNGKACIP------TGPYPCGKQTLERRKRSVAQATSSSG 147
Score = 25.9 bits (57), Expect = 7.8
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 16/96 (16%)
Query: 23 CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFG---CSCATGYQGE 79
D+ C SP Q +G C G C+C G++G+
Sbjct: 27 EDSDKTNEFWNKYKDGDQ----------CETSPCQNQGK--CKDGLGEYTCTCLEGFEGK 74
Query: 80 QCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGG 115
C + + C + + C G
Sbjct: 75 NCELFTRKLCSLDNGDCD-QFCHEEQNSVVCSCARG 109
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 33.0 bits (76), Expect = 0.023
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 21/111 (18%)
Query: 12 CLNGGVEMDSM----CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCT-- 65
C + G ++++ C C G+ G +CEI + C +P C+ C
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNE----------CVSNP--CQNDATCLDQ 62
Query: 66 -SNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGG 115
F C C GY+G C E ++ + C G C+D +++ C G
Sbjct: 63 IGEFQCICMPGYEGVHC-EVNTDECASSPC-LHNGRCLDKINEFQCECPTG 111
Score = 31.0 bits (71), Expect = 0.085
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
Query: 12 CLNGGVEMDS----MCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTS- 66
C N +D C+C PG+ G CE+ D C+ SP C C
Sbjct: 53 CQNDATCLDQIGEFQCICMPGYEGVHCEVNTDE----------CASSP--CLHNGRCLDK 100
Query: 67 --NFGCSCATGYQGEQC 81
F C C TG+ G C
Sbjct: 101 INEFQCECPTGFTGHLC 117
Score = 27.2 bits (61), Expect = 2.1
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 14/53 (26%)
Query: 12 CLNGGVEMDSM----CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKG 60
CL+ G +D + C C GF G C++ +
Sbjct: 91 CLHNGRCLDKINEFQCECPTGFTGHLCQVDLHH----------ILDAQKMVWN 133
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 33.8 bits (77), Expect = 0.023
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 17/80 (21%)
Query: 5 TNENSIECLNGGVEMDSMCLCTPGFAGKKCEIP-CDRNNFGHKCSMLCSKSPNQCKGMVL 63
T+E S C NG C C+PG+ G C C+ C+ +
Sbjct: 392 TSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPA----------------CRHGGV 435
Query: 64 CTSNFGCSCATGYQGEQCLE 83
C C C GY G QC +
Sbjct: 436 CVRPNKCLCKKGYLGPQCEQ 455
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 33.0 bits (74), Expect = 0.030
Identities = 13/66 (19%), Positives = 17/66 (25%), Gaps = 2/66 (3%)
Query: 16 GVEMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATG 75
GV + + G F C P C+ C C C G
Sbjct: 115 GVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAEC--PGGCRNGGFCNERRICECPDG 172
Query: 76 YQGEQC 81
+ G C
Sbjct: 173 FHGPHC 178
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 31.1 bits (70), Expect = 0.14
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 8/132 (6%)
Query: 3 SNTNENSIECLNGGVEMDSMCLCTPGFAGKKCEIP-CDRNNFGHKCSMLCSKSPNQCKGM 61
+ + + C G +C C G+ GK CE R++ + S + C G+
Sbjct: 89 RDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGL 148
Query: 62 VLCTSNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGE---CIDGCDQYTGVCRGGCTT 118
C C C T + + + +C++ G+ + G CR C
Sbjct: 149 GDCVCGQ-CLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCR--CHP 205
Query: 119 PYLIRPYCKQPH 130
+ C+ H
Sbjct: 206 GF-EGSACQHHH 216
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 31.4 bits (71), Expect = 0.17
Identities = 18/122 (14%), Positives = 30/122 (24%), Gaps = 9/122 (7%)
Query: 48 SMLCSKSPNQCKGMVL-CTSNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGE-CIDGC 105
S KS + C + C + + + D A + C + C +
Sbjct: 266 STRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAV 325
Query: 106 DQ-------YTGVCRGGCTTPYLIRPYCKQPHSYLEESPRVLDSSYNAVNLQIDLTTSNI 158
C G YL P L + + + + TT
Sbjct: 326 RCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIK 385
Query: 159 ER 160
R
Sbjct: 386 PR 387
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 28.2 bits (64), Expect = 0.17
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 12 CLNGGVEMDSM----CLCTPGFAGKKCEI 36
CLNGG D + C C GF GK CE+
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCEL 39
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 30.2 bits (67), Expect = 0.35
Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 17/143 (11%)
Query: 37 PCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGEQCLEHCPEDYYGADCKQ 96
C NN G CS +C+ + C C G+Q + ED D Q
Sbjct: 2 ECLDNNGG--CSHVCNDLKI----------GYECLCPDGFQLVA--QRRCEDI---DECQ 44
Query: 97 KCGECIDGCDQYTGVCRGGCTTPYLIRPYCKQPHSYLEESPRVLDSSYNAVNLQIDLTTS 156
C C G + C + + P+ K + + + + + +D +
Sbjct: 45 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEY 104
Query: 157 NIERSYDHTKFYKVQYHKTKSIY 179
+ IY
Sbjct: 105 TSLIPNLRNVVALDTEVASNRIY 127
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 29.4 bits (66), Expect = 0.41
Identities = 29/132 (21%), Positives = 40/132 (30%), Gaps = 27/132 (20%)
Query: 6 NENSIECLNGGVEMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKS---PNQCKGMV 62
S + + C G AGK+CE+ CD FG P QC +
Sbjct: 4 PGGSSCAIVPKTKEVVCTHCPTGTAGKRCEL-CDDGYFGDPLGSNGPVRLCRPCQCNDNI 62
Query: 63 LCTSNFGC--------SCATGYQGEQCLEHCPEDYYG----ADCKQKCGEC--------- 101
+ C C G C + C E ++G + KC C
Sbjct: 63 DPNAVGNCNRLTGECLKCIYNTAGFYC-DRCKEGFFGNPLAPNPADKCKACACNPYGTVQ 121
Query: 102 -IDGCDQYTGVC 112
C+ TG C
Sbjct: 122 QQSSCNPVTGQC 133
Score = 27.1 bits (60), Expect = 2.5
Identities = 19/83 (22%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 25 CTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQC--------KGMVLCTSNFG-CSCATG 75
C AG C+ C FG+ + + C + C G C C
Sbjct: 80 CIYNTAGFYCDR-CKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPH 138
Query: 76 YQGEQCLEHCPEDYYGADCKQKC 98
G C C YY Q C
Sbjct: 139 VSGRDC-GTCDPGYYNLQSGQGC 160
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 29.9 bits (66), Expect = 0.44
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 3 SNTNENSIECLNG-GVEMDSMCLCTPGFAGKKCE 35
+ NS C NG G +C C PG+ G +CE
Sbjct: 439 AQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 30.0 bits (67), Expect = 0.46
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 12 CLNGGVEMDS----MCLCT-PGFAGKKCEIPCDRNNFGHKCSMLCSKSPN 56
C N GV + C C+ F+G C P F + K P
Sbjct: 193 CSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPP 242
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 29.7 bits (66), Expect = 0.55
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 16/95 (16%)
Query: 37 PCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGEQCLEHCPEDYYGADCKQ 96
C+ NN G C+ C C+C TGY+ + C + +C +
Sbjct: 5 NCNVNNGG--CAQKCQMIRG----------AVQCTCHTGYRLTEDGRTCQDV---NECAE 49
Query: 97 KCGECIDGCDQYTGVCRGGCTTPYLIRPYCKQPHS 131
+ G C GC G + C Y +RP + +
Sbjct: 50 E-GYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKA 83
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 29.0 bits (64), Expect = 0.85
Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 7/78 (8%)
Query: 25 CTPGFAGKKCE-IPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGEQCLE 83
P G IP + + C C+ C +N C C Y G C E
Sbjct: 343 YLPIPKGAANACIPSISSIGTNVCDNEL----LHCQNGGTCHNNVRCLCPAAYTGILC-E 397
Query: 84 HCPEDYYGADCKQKCGEC 101
+ G+ C G+
Sbjct: 398 KLRCEEAGS-CGSDSGQG 414
Score = 28.7 bits (63), Expect = 1.2
Identities = 11/77 (14%), Positives = 18/77 (23%), Gaps = 5/77 (6%)
Query: 43 FGHKCSMLCSKSPNQCKGM--VLCTSNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGE 100
+ + + V S C C G C C ++Y G G
Sbjct: 286 YAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDC-GKCKKNYQGRPWSP--GS 342
Query: 101 CIDGCDQYTGVCRGGCT 117
+ C +
Sbjct: 343 YLPIPKGAANACIPSIS 359
Score = 26.0 bits (56), Expect = 9.4
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 6 NENSIECLNGGVEMDSM-CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQC 58
+ + C NGG +++ CLC + G CE G C Q
Sbjct: 367 DNELLHCQNGGTCHNNVRCLCPAAYTGILCE-KLRCEEAGS-----CGSDSGQG 414
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 27.7 bits (62), Expect = 1.5
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 23 CLCTPGFAGKKCEIPCDRNN----FGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQG 78
C C+ + C + C + N C S+ G + +
Sbjct: 26 CECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTL 85
Query: 79 EQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGG 115
Q C + Y Q C + ID C+ + GVC+ G
Sbjct: 86 CQVDPICGKGYSRIKGTQ-CED-IDECEVFPGVCKNG 120
>1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein,
transmembrane; HET: NAG; 2.40A {Saccharomyces
cerevisiae} SCOP: c.69.1.5
Length = 483
Score = 28.1 bits (63), Expect = 1.7
Identities = 8/60 (13%), Positives = 10/60 (16%), Gaps = 7/60 (11%)
Query: 79 EQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCR-------GGCTTPYLIRPYCKQPHS 131
E C EC + + R C Y P
Sbjct: 249 ENCQNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSC 308
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 28.4 bits (62), Expect = 1.7
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 3 SNTNENSIECLNG-GVEMDSMCLCTPGFAGKKCEIPCDRNN 42
S+T + C +G G +C C PG G+ CE
Sbjct: 460 SDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCE--SRGLE 498
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 27.9 bits (61), Expect = 1.8
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 4 NTNENSIECLNGGVEMDSMCLCTPGFAGKKCEIPCD-RNNFGHKCSMLCSKSPNQCKGMV 62
+ + + C G +C C G+ GK CE R++ + S + C G+
Sbjct: 190 DQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLG 249
Query: 63 LCTSNFGCSCATGYQGEQCLEHCPEDYYGADC 94
C C C T + YG C
Sbjct: 250 DCVCGQ-CLCHTSDVPG-------KLIYGQYC 273
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 27.8 bits (61), Expect = 2.1
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 17/95 (17%)
Query: 23 CLCTPGFAGKKCEI-----------PCDRNNFGHKCSMLCSKSPNQC---KGMVLCTSNF 68
C C G CE + C+ +C + T +
Sbjct: 274 CNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHG 333
Query: 69 G--CSCATGYQGEQCLEHCPEDYYGADCKQKCGEC 101
G +C G +C E C E+++ + C
Sbjct: 334 GHCTNCRDNTDGAKC-ERCRENFFRLGNTEACSPA 367
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 28.1 bits (61), Expect = 2.1
Identities = 17/98 (17%), Positives = 25/98 (25%), Gaps = 6/98 (6%)
Query: 25 CTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGEQCLEH 84
T +C C N C C G +C C+
Sbjct: 186 LTKTICAPQCNGHCFGPNPNQCCHDEC------AGGCSGPQDTDCFACRHFNDSGACVPR 239
Query: 85 CPEDYYGADCKQKCGECIDGCDQYTGVCRGGCTTPYLI 122
CP+ + QY GVC C +++
Sbjct: 240 CPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVV 277
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 27.9 bits (61), Expect = 2.2
Identities = 15/101 (14%), Positives = 25/101 (24%), Gaps = 13/101 (12%)
Query: 11 ECLNGGVEMDSMCLCTPGFAGKKCEI--PCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNF 68
L G D ++ K I C + C P + +
Sbjct: 237 GHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQ--------- 287
Query: 69 GCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDGCDQYT 109
C+C G C + C + K + + C
Sbjct: 288 -CACQHNTCGGSC-DRCCPGFNQQPWKPATTDSANECQSCN 326
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 27.7 bits (60), Expect = 2.3
Identities = 15/89 (16%), Positives = 20/89 (22%), Gaps = 9/89 (10%)
Query: 38 CDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQGEQCLEHCPEDYYGADCKQK 97
+ FG + P+ C G C S C C GY Q
Sbjct: 178 KNVPPFGLDGVYISEPCPSYCSGHGDCISG-VCFCDLGYTAAQG--------TCVSNTPN 228
Query: 98 CGECIDGCDQYTGVCRGGCTTPYLIRPYC 126
E D + T +
Sbjct: 229 HSEMFDRFEGKLSPLWYKITGGQVGTGCG 257
Score = 27.7 bits (60), Expect = 2.8
Identities = 9/71 (12%), Positives = 16/71 (22%)
Query: 5 TNENSIECLNGGVEMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLC 64
+ C G + +C C G+ + + N K +
Sbjct: 191 SEPCPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGG 250
Query: 65 TSNFGCSCATG 75
GC
Sbjct: 251 QVGTGCGTLND 261
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 27.3 bits (60), Expect = 2.7
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 9/51 (17%)
Query: 37 PCDRNNFG-HKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQ----GEQCL 82
C+R C LC +P + F C+C G CL
Sbjct: 269 WCERTTLSNGGCQYLCLPAPQINPH----SPKFTCACPDGMLLARDMRSCL 315
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 27.7 bits (60), Expect = 3.0
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 6/117 (5%)
Query: 6 NENSIECLNGGVEMDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCT 65
+ + G ++ T ++C C + C C G
Sbjct: 167 DPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQC------AAGCTGPR 220
Query: 66 SNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGGCTTPYLI 122
+ C C + CP + +G + C C Y++
Sbjct: 221 ESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVV 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 27.3 bits (60), Expect = 3.1
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 12/53 (22%)
Query: 37 PCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGCSCATGYQ----GEQCLEHC 85
CS LC SP + + C+C TG + G+ C +
Sbjct: 267 TNPCGIDNGGCSHLCLMSPVK--------PFYQCACPTGVKLLENGKTCKDGN 311
Score = 26.2 bits (57), Expect = 7.3
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 9 SIECLNGGVEMDSMCLCTPGFA----GKKCEIPCDRNNFGH 45
S CL V+ C C G GK C+ ++ H
Sbjct: 278 SHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSHHHHHH 318
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 27.7 bits (60), Expect = 3.3
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 55 PNQCKGMVLCTSNFGCSCATGYQGEQC 81
C G C + C C GY G C
Sbjct: 189 EEMCYGHGSCINGTKCICDPGYSGPTC 215
Score = 26.1 bits (56), Expect = 10.0
Identities = 9/75 (12%), Positives = 15/75 (20%), Gaps = 4/75 (5%)
Query: 11 ECLNGGVEMDSMCLCTPGFAGKKCE-IPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFG 69
C G + C+C + G C+ + N +
Sbjct: 540 MCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWL---TVSGGKLS 596
Query: 70 CSCATGYQGEQCLEH 84
C G
Sbjct: 597 TVCGAVASGLALHFS 611
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
domain, LNR repeat, calcium-binding, domain,
autoinhibition, activator, T-all; 2.00A {Homo sapiens}
PDB: 3l95_X* 3i08_B 1pb5_A
Length = 242
Score = 27.1 bits (59), Expect = 3.5
Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 16/105 (15%)
Query: 25 CTPGFAGKKCEIPCDR---NNFGHKCSMLCSKSPNQCKGMVLCTSNFG-CSCATGYQGEQ 80
C K C + C+ G CS+ + C + C F C +
Sbjct: 10 CQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAG 69
Query: 81 CLEHCPEDYYGADCKQKCGECIDGCDQYT------GVCRGGCTTP 119
CL + G DC++ G+C DQY G C GC +
Sbjct: 70 CL------FDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSA 108
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 25.9 bits (57), Expect = 3.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 12 CLNGGVEMDSMCLCTPGFAGKKCEI 36
C D +C C GFAGK CEI
Sbjct: 62 CQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 25.1 bits (55), Expect = 6.3
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 16/63 (25%)
Query: 23 CLCTPGFAGKKCEIPCDRNNFGHKCSMLCSKSPNQ----CKGMVLCTSNFGCSCATGYQG 78
C C G A +P CS+ C+ + S+F C C G+ G
Sbjct: 34 CWCNSGRAQC-HSVPVKS----------CSEPRCFNGGTCQQALY-FSDFVCQCPEGFAG 81
Query: 79 EQC 81
+ C
Sbjct: 82 KSC 84
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 27.3 bits (59), Expect = 4.1
Identities = 15/90 (16%), Positives = 21/90 (23%), Gaps = 1/90 (1%)
Query: 34 CEIPCDRNNFGHKCSMLCSKSPNQCKGMVLCTSNFGC-SCATGYQGEQCLEHCPEDYYGA 92
C K + QC + C +C C HCP
Sbjct: 195 TGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYN 254
Query: 93 DCKQKCGECIDGCDQYTGVCRGGCTTPYLI 122
+ +G + C C YL
Sbjct: 255 TDTFESMHNPEGRYTFGASCVTTCPYNYLS 284
Score = 26.5 bits (57), Expect = 7.4
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 9/90 (10%)
Query: 25 CTPGFAGKKCEIPCDRNNF---GHKCSMLCSKSPNQCKGMVLCTSNFGC------SCATG 75
C+ G++C C + C +C+ + FG +CA
Sbjct: 510 CSHFLRGQECVEECRVWKGLPREYVSDKRCLPCHPECQPQNSSETCFGSEADQCAACAHY 569
Query: 76 YQGEQCLEHCPEDYYGADCKQKCGECIDGC 105
C+ CP + D
Sbjct: 570 KDSSSCVARCPSGVKPDLSYMPIWKYPDEE 599
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport,
membrane, phosphorylation; 2.80A {Homo sapiens}
Length = 298
Score = 26.8 bits (59), Expect = 4.5
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 19 MDSMCLCTPGFAGKKCEIPCDRNNFGHKCSMLCS---KSPNQCKGMVLCTSNFGCSCATG 75
+ ++ L F KC + +C++ S K P+Q + + C F +G
Sbjct: 143 LAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLF----WSG 198
Query: 76 YQGEQCLEHCPEDYYGADCKQKCGECIDGC 105
++ E +C +K + + C
Sbjct: 199 RNTDKNGEELHGGKRVMECLKKALKIANQC 228
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 25.9 bits (57), Expect = 5.0
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 124 PYCKQPHSYLEESPRVLDSSYNAVNLQIDLTTSNIE 159
CK+ Y P+V + + V LQ ++T ++ +
Sbjct: 44 VACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQ 79
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 26.5 bits (58), Expect = 6.0
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 67 NFGCSCATGYQGEQCLEH 84
F C C G+Q C
Sbjct: 396 EFKCRCYPGWQAPWCERK 413
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 24.5 bits (53), Expect = 6.4
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 8/32 (25%)
Query: 12 CLNGGV--------EMDSMCLCTPGFAGKKCE 35
CLN C C GF G++CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
>3ca7_A Protein spitz; argos, EGF, developmental protein,
differentiation, EGF-like domain, endoplasmic
reticulum, glycoprotein, golgi apparatus; 1.50A
{Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Length = 52
Score = 24.5 bits (53), Expect = 6.8
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 8/32 (25%)
Query: 12 CLNGGV--------EMDSMCLCTPGFAGKKCE 35
CLN C C GF G++CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
>3syy_A Exonuclease; digest double stranded DNA, strict 5-3 polarity,
hydrolase; 1.90A {Laribacter hongkongensis} PDB: 3sz4_A*
3sz5_A
Length = 216
Score = 26.1 bits (56), Expect = 8.0
Identities = 15/119 (12%), Positives = 29/119 (24%), Gaps = 8/119 (6%)
Query: 66 SNFGCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGGCTTPYLIRPY 125
S G ++Y Q+ + + RG P+ Y
Sbjct: 19 SRVADVMTKTKSGYAA---SRQNYMAELICQRLTGTQEIRFSNAAMQRGTELEPHARARY 75
Query: 126 CKQPHSYLEESPRVLDSSYNAVNLQIDLTTSN-----IERSYDHTKFYKVQYHKTKSIY 179
+ + E + + D + I+ T ++ K K Y
Sbjct: 76 IIETGEIVTEVGLIDHPTIAGFGASPDGLVGDTGLIEIKCPNTWTHIETIKTGKPKPEY 134
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 25.9 bits (57), Expect = 8.6
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 16/111 (14%)
Query: 68 FGCSCATGYQ---GEQCLEH----CPEDYYGADCKQKC--------GECIDGCDQYTGVC 112
F +C GYQ G Q L C +D +C +G +YT
Sbjct: 28 FIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTT- 86
Query: 113 RGGCTTPYLIRPYCKQPHSYLEESPRVLDSSYNAVNLQIDLTTSNIERSYD 163
G T I+ YC +P+ ++ +S N ++
Sbjct: 87 MGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEK 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.449
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,753,413
Number of extensions: 158954
Number of successful extensions: 1073
Number of sequences better than 10.0: 1
Number of HSP's gapped: 698
Number of HSP's successfully gapped: 347
Length of query: 188
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 100
Effective length of database: 4,244,745
Effective search space: 424474500
Effective search space used: 424474500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)