RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18122
(188 letters)
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 26.6 bits (59), Expect = 0.26
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 12 CLNGGVEMDS----MCLCTPGFAGKKCEI 36
CLNGG D C C GF GK CE+
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCEL 39
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 26.2 bits (58), Expect = 0.35
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 12 CLNGGVEMDS----MCLCTPGFAGKKCEI 36
C N G D C C GF GK CE+
Sbjct: 8 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 36
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 25.8 bits (57), Expect = 0.57
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 12 CLNGGVEMDS----MCLCTPGFAGKKCEI 36
C N +D C+C PG+ G CE+
Sbjct: 9 CQNDATCLDQIGEFQCICMPGYEGVHCEV 37
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 85
Score = 25.8 bits (57), Expect = 1.3
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 150 QIDLTTSNIERSYDHTKFYKVQYHKTKSIYRLVN 183
QI + T I +H + +K +H + + ++V
Sbjct: 26 QIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVG 59
>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli
[TaxId: 562]}
Length = 88
Score = 25.8 bits (57), Expect = 1.4
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 150 QIDLTTSNIERSYDHTKFYKVQYHKTKSIYRLVN 183
Q+ L T+ I H +K +H + + R+V+
Sbjct: 27 QVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVS 60
>d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 452
Score = 27.1 bits (59), Expect = 1.5
Identities = 11/106 (10%), Positives = 21/106 (19%)
Query: 68 FGCSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDGCDQYTGVCRGGCTTPYLIRPYCK 127
+ HC K EC+ + + Y + C
Sbjct: 195 YYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVARIVGNSGLNIYNLYAPCA 254
Query: 128 QPHSYLEESPRVLDSSYNAVNLQIDLTTSNIERSYDHTKFYKVQYH 173
+ + N+ L + KV+
Sbjct: 255 GGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVRMD 300
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 24.7 bits (54), Expect = 1.5
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 12 CLNGGVEMDSM----CLCTPGFAGKKCE 35
C NGG D + C C P F G+ CE
Sbjct: 10 CQNGGSCKDQLQSYICFCLPAFEGRNCE 37
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 24.7 bits (54), Expect = 1.6
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 12 CLNGGVEMDSM----CLCTPGFAGKKCEI 36
C + G ++++ C C G+ G +CEI
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCEI 41
Score = 24.3 bits (53), Expect = 2.1
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 51 CSKSPNQCKGMVLCTSNFG---CSCATGYQGEQC 81
CS N C+ C + G C C GY G +C
Sbjct: 6 CSLGANPCEHAGKCINTLGSFECQCLQGYTGPRC 39
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 24.2 bits (53), Expect = 1.8
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 12 CLNGGVEMDS----MCLCTPGFAGKKCE 35
CL+ G +D C C GF G C+
Sbjct: 8 CLHNGRCLDKINEFQCECPTGFTGHLCQ 35
>d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 120
Score = 24.9 bits (53), Expect = 4.7
Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 9/92 (9%)
Query: 25 CTPGFAGKKCEIPCDRN---NFGHKCSMLCSKSPNQCKGMVLCTSNFG------CSCATG 75
C+ G++C C + C +C+ + FG +CA
Sbjct: 22 CSHFLRGQECVEECRVWKGLPREYVSDKRCLPCHPECQPQNSSETCFGSEADQCAACAHY 81
Query: 76 YQGEQCLEHCPEDYYGADCKQKCGECIDGCDQ 107
C+ CP + D
Sbjct: 82 KDSSSCVARCPSGVKPDLSYMPIWKYPDEEGI 113
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 23.3 bits (50), Expect = 4.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 3 SNTNENSIECLNGGVEMDSMCLCTPGFAGKKCEI 36
N C D +C C GFAGK CEI
Sbjct: 3 EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 36
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 23.3 bits (50), Expect = 4.9
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 12 CLNGGVEMDSM-----CLCTPGFAGKKCE 35
C+ G C+C G+ G +CE
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGARCE 44
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 22.8 bits (49), Expect = 5.6
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 12 CLNGGVEMDS----MCLCTPGFAGKKCEIPCD 39
C G +++ C C PGF G +CE D
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYGPECEYVRD 40
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 23.3 bits (50), Expect = 5.7
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 12 CLNGGVEMDS------MCLCTPGFAGKKCEI 36
CLNGGV M C C G++G +C+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus
[TaxId: 274]}
Length = 84
Score = 23.9 bits (52), Expect = 5.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 150 QIDLTTSNIERSYDHTKFYKVQYHKTKSIYRLVN 183
Q+ L T I R +H K +K +H + + +V
Sbjct: 25 QVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVG 58
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 24.4 bits (53), Expect = 7.0
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Query: 129 PHSYLEESPRVLD---SSYNAVNLQIDLTTSNIERSYDHTKFYKVQYHKTKSIYR 180
P S LE S VL+ ++A +D+ +YK+Q + R
Sbjct: 18 PDSGLEHSAHVLEKGGKVFSATLGLVDIVKGT-------NSYYKLQLLEDDKENR 65
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 22.8 bits (49), Expect = 7.3
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 12 CLNGGVEMDSM----CLCTPGFAGKKCE 35
C G ++++ C C PGF+G KCE
Sbjct: 9 CSGHGECVETINNYTCKCDPGFSGLKCE 36
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 22.5 bits (48), Expect = 7.7
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 12 CLNGGVEMDS-----MCLCT-PGFAGKKCEIP 37
C N G M + C CT GF G+ C P
Sbjct: 9 CQNRGECMSTGFDQYKCDCTRTGFYGENCTTP 40
>d1nqla4 g.3.9.1 (A:481-614) EGF receptor Cys-rich domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 24.1 bits (51), Expect = 8.8
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 51 CSKSPNQCKGMVLCTSNFG------CSCATGYQGEQCLEHCPEDYYGADCKQKCGECIDG 104
C + +C + + G CA G C++ CP G + G
Sbjct: 51 CIQCHPECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTCPAGVMGENNTLVWKYADAG 110
Query: 105 --CDQYTGVCRGGCTTP 119
C C GCT P
Sbjct: 111 HVCHLCHPNCTYGCTGP 127
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 22.5 bits (48), Expect = 9.7
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 12 CLNGGVEMDS------MCLCTPGFAGKKCE 35
CL+ GV M C C G+ G++C+
Sbjct: 12 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.449
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 717,124
Number of extensions: 37300
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 137
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)