Query psy18129
Match_columns 470
No_of_seqs 223 out of 1697
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 23:12:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819|consensus 100.0 7.5E-79 1.6E-83 594.5 27.7 303 96-470 16-318 (321)
2 KOG0819|consensus 100.0 2.1E-73 4.6E-78 556.2 21.5 290 33-396 27-319 (321)
3 PF00191 Annexin: Annexin; In 99.7 1.9E-16 4.2E-21 123.4 7.1 66 100-165 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.6 8.4E-16 1.8E-20 119.8 9.0 66 403-468 1-66 (66)
5 smart00335 ANX Annexin repeats 99.4 7.2E-13 1.6E-17 98.7 5.7 53 113-165 1-53 (53)
6 smart00335 ANX Annexin repeats 99.3 4.8E-12 1E-16 94.3 6.2 53 416-468 1-53 (53)
7 PF14003 YlbE: YlbE-like prote 45.3 43 0.00092 26.0 4.2 48 346-394 13-61 (65)
8 PF14003 YlbE: YlbE-like prote 34.0 60 0.0013 25.2 3.5 36 421-457 13-48 (65)
9 TIGR02029 AcsF magnesium-proto 25.5 96 0.0021 31.6 4.3 31 237-267 20-50 (337)
10 PRK13654 magnesium-protoporphy 25.3 97 0.0021 31.9 4.3 31 237-267 30-60 (355)
11 CHL00185 ycf59 magnesium-proto 25.1 96 0.0021 31.8 4.2 31 237-267 26-56 (351)
12 cd01047 ACSF Aerobic Cyclase S 24.6 1E+02 0.0022 31.2 4.3 31 237-267 10-40 (323)
13 PF13720 Acetyltransf_11: Udp 21.9 1.2E+02 0.0026 24.5 3.5 19 249-267 28-46 (83)
14 PHA01794 hypothetical protein 21.7 5E+02 0.011 23.0 7.4 52 115-166 34-98 (134)
15 PF00249 Myb_DNA-binding: Myb- 21.2 2.5E+02 0.0055 19.6 4.8 33 223-255 7-41 (48)
No 1
>KOG0819|consensus
Probab=100.00 E-value=7.5e-79 Score=594.52 Aligned_cols=303 Identities=49% Similarity=0.744 Sum_probs=293.7
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcHHHhhhcCCCcchHHHHHHhhhcccCCCCC
Q psy18129 96 PLPDLYAKELHKAISGLGTDEKALVEILTTLSNFGIRTITQVYETAYKASLEKDIKGDTSGHFKRLLVSLSQANRDESVE 175 (470)
Q Consensus 96 ~p~~~dA~~L~~A~kG~gtde~~LieIL~~rt~~q~~~I~~~Y~~~y~~~L~~di~se~sG~~~~ll~~ll~~~r~e~~~ 175 (470)
+.|..||+.|++||+|+||||++||+||+.|||+|++.|+++|+.+||+||.+++++++||+|++++++|+..+
T Consensus 16 f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~~p------ 89 (321)
T KOG0819|consen 16 FDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVALMKPP------ 89 (321)
T ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcCCH------
Confidence 44778999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCCccchhhhcccCCcccCCCCCChHHHHHHHHHHHhcCCCCHHHHHHHhhcCCHHHHH
Q psy18129 176 VDPQLARADAQALLDAGVKKWGTDESTFNSILQCTPTVFPAPNFNAKADAEALRAAMKGLGTDEKAIIDILAKRSIVQRM 255 (470)
Q Consensus 176 vd~~~a~~da~~L~~a~~~~~gtde~~f~~il~~~~~~~~~~~~~~~~dA~~L~~A~kG~gtde~~li~IL~~rs~~q~~ 255 (470)
+.+||..|++||+|+|||+++||+|||+|||.|++
T Consensus 90 ---------------------------------------------~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~ 124 (321)
T KOG0819|consen 90 ---------------------------------------------AEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELR 124 (321)
T ss_pred ---------------------------------------------HHhHHHHHHHHHhccCcchhhheeeeccCCHHHHH
Confidence 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHhHHHHHHhhcCcHHHHHhhcccccHHHHHHHhhcchhhhhhcccCCCCCCChHHHHHHHHHHHHc
Q psy18129 256 EITDAFKTLYGKLRRTFKEYEELAGHDIEDAIKGEMSGGVKDGFLSIGFDSRAKELKSRDESVEVDPQLARADAQALLDA 335 (470)
Q Consensus 256 ~I~~~Y~~~y~kl~~~~~~Y~~~~~~~L~~~i~se~sG~~~~~ll~ll~~~r~~~~~~~~~~~~~d~~~~~~dA~~L~~A 335 (470)
+|+++|+..|++ +|+++|.+++||+|+++|+.++++.| +++..+|+..|..||+.|++|
T Consensus 125 ~i~~aY~~~y~~--------------sLEeDI~s~TSG~frklLv~L~~~~R-------~e~~~vd~~la~~dA~~L~~A 183 (321)
T KOG0819|consen 125 AIRQAYQELYKK--------------SLEEDIASDTSGDFRKLLVSLVQGNR-------DEGDRVDDALAKQDAQDLYEA 183 (321)
T ss_pred HHHHHHHHHHcc--------------cHHHHhhhccCchHHHHHHHHHhcCC-------ccCCCcCHHHHHHHHHHHHHH
Confidence 999999999987 99999999999999999999998765 555689999999999999999
Q ss_pred cccCCCCCccchhHHhhcCCHHHHHHHHHHHHHhcCCCHHHHHhhccCCChHHHHHHHHHhhcCCcHHHHHHHHhhhcCC
Q psy18129 336 GVKKWGTDESTFNSILVTRSYQQLRRTFKEYEELAGHDIEDAIKGEMSGGVKDGFLSIVQCVKDKSSYLARRLKDAMAGI 415 (470)
Q Consensus 336 ~~kg~gtde~~li~Il~~Rs~~~L~~I~~~Y~~~yg~sL~~~I~~e~sGd~~~~Llall~~~~~~~~~~A~~L~~A~~g~ 415 (470)
+.+++|||+..|+.||++||.+||+.++++|++.+|+++++.|+++++|||+++|++++.|++|||.|||+.||.||+|.
T Consensus 184 ge~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~c~~n~~~yFA~~L~~amkg~ 263 (321)
T KOG0819|consen 184 GEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVKCIRNPPAYFAERLRKAMKGL 263 (321)
T ss_pred hhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHHHHcCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHhhhCCHHHHHHHHHHHHhhhCCcHHHHHhhcCcHHHHHHHHHHhC
Q psy18129 416 GTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLALVA 470 (470)
Q Consensus 416 gtd~~~Lirilv~rs~~~l~~I~~~Y~~~yg~sL~~~I~~e~sGdy~~~LLal~~ 470 (470)
|||+++||||+|||||+||..|+.+|+++||+||+++|+++|||||+++||+|||
T Consensus 264 GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g 318 (321)
T KOG0819|consen 264 GTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLALLG 318 (321)
T ss_pred CCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999997
No 2
>KOG0819|consensus
Probab=100.00 E-value=2.1e-73 Score=556.21 Aligned_cols=290 Identities=45% Similarity=0.613 Sum_probs=273.0
Q ss_pred CCcccccccc---ccccCCCChhhhhccccCcchhHHHHhcCCChHHHHHhhccccHHHHHHHHcCCChHHHHHHHHHHH
Q psy18129 33 FRERTLSVQD---RILPGRESNPQPSFYKAHALPTKLTWAGPMDLIRELKSELSGNFEDAVVALMTPLPDLYAKELHKAI 109 (470)
Q Consensus 33 ~~~~~~~~~~---~~il~~rs~~qr~~I~~~~~~~~Y~~~~g~~L~~~lk~elsG~~~~~l~~l~~~p~~~dA~~L~~A~ 109 (470)
-+..-|+.++ |-||++|||+|||+| +.+|+.+||+||.++|++||||+|++++++|+.||+++||++|++||
T Consensus 27 kA~kG~Gtde~aII~iL~~Rsn~QRq~I-----~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~~p~~~DA~~l~~am 101 (321)
T KOG0819|consen 27 KAMKGFGTDEQAIIDILTHRSNAQRQLI-----RAAYKTMYGKDLIKDLKSELSGDFERAIVALMKPPAEYDAKELKKAM 101 (321)
T ss_pred HHHhcCCCCHHHHHHHHHccCHHHHHHH-----HHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcCCHHHhHHHHHHHHH
Confidence 3455677776 559999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcHHHhhhcCCCcchHHHHHHhhhcccCCCCCCCHHHHHHHHHHHH
Q psy18129 110 SGLGTDEKALVEILTTLSNFGIRTITQVYETAYKASLEKDIKGDTSGHFKRLLVSLSQANRDESVEVDPQLARADAQALL 189 (470)
Q Consensus 110 kG~gtde~~LieIL~~rt~~q~~~I~~~Y~~~y~~~L~~di~se~sG~~~~ll~~ll~~~r~e~~~vd~~~a~~da~~L~ 189 (470)
||+||||.+||||||+|||.|+++|+++|+..|+++|++||.+++||+|+++|+.|++|.|+|+..||+++|++||+.||
T Consensus 102 kg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~~~vd~~la~~dA~~L~ 181 (321)
T KOG0819|consen 102 KGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEGDRVDDALAKQDAQDLY 181 (321)
T ss_pred hccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HhcccCCCCCccchhhhcccCCcccCCCCCChHHHHHHHHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHHhhhhH
Q psy18129 190 DAGVKKWGTDESTFNSILQCTPTVFPAPNFNAKADAEALRAAMKGLGTDEKAIIDILAKRSIVQRMEITDAFKTLYGKLR 269 (470)
Q Consensus 190 ~a~~~~~gtde~~f~~il~~~~~~~~~~~~~~~~dA~~L~~A~kG~gtde~~li~IL~~rs~~q~~~I~~~Y~~~y~kl~ 269 (470)
+||+++||||+..| +.||++||..| |+
T Consensus 182 ~Age~k~gtde~~~---------------------------------------~~Il~tRs~~q--------------L~ 208 (321)
T KOG0819|consen 182 EAGEKKWGTDEDKF---------------------------------------IRILTTRSKAQ--------------LR 208 (321)
T ss_pred HHhhhhccCcHHHH---------------------------------------HHHHHhCCHHH--------------HH
Confidence 99999998765555 67789999988 56
Q ss_pred HhHHHHHHhhcCcHHHHHhhcccccHHHHHHHhhcchhhhhhcccCCCCCCChHHHHHHHHHHHHccccCCCCCccchhH
Q psy18129 270 RTFKEYEELAGHDIEDAIKGEMSGGVKDGFLSIGFDSRAKELKSRDESVEVDPQLARADAQALLDAGVKKWGTDESTFNS 349 (470)
Q Consensus 270 ~~~~~Y~~~~~~~L~~~i~se~sG~~~~~ll~ll~~~r~~~~~~~~~~~~~d~~~~~~dA~~L~~A~~kg~gtde~~li~ 349 (470)
++|+.|++.+|+++++.|+.|+||++++++++++.|.+ | ++.++|+.||.| |+|+|||+.+|||
T Consensus 209 ~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~c~~-------------n--~~~yFA~~L~~a-mkg~GTdd~~LiR 272 (321)
T KOG0819|consen 209 LVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVKCIR-------------N--PPAYFAERLRKA-MKGLGTDDKTLIR 272 (321)
T ss_pred HHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHHHHc-------------C--HHHHHHHHHHHH-HhccCCCccceee
Confidence 67788888888899999999999999999999998654 4 478999999999 9999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCCHHHHHhhccCCChHHHHHHHHHh
Q psy18129 350 ILVTRSYQQLRRTFKEYEELAGHDIEDAIKGEMSGGVKDGFLSIVQC 396 (470)
Q Consensus 350 Il~~Rs~~~L~~I~~~Y~~~yg~sL~~~I~~e~sGd~~~~Llall~~ 396 (470)
|+++|++.+|..|+.+|+++||+||.++|++++||||+++|++||++
T Consensus 273 I~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g~ 319 (321)
T KOG0819|consen 273 IVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLALLGG 319 (321)
T ss_pred eeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999975
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.66 E-value=1.9e-16 Score=123.37 Aligned_cols=66 Identities=48% Similarity=0.725 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcHHHhhhcCCCcchHHHHHHh
Q psy18129 100 LYAKELHKAISGLGTDEKALVEILTTLSNFGIRTITQVYETAYKASLEKDIKGDTSGHFKRLLVSL 165 (470)
Q Consensus 100 ~dA~~L~~A~kG~gtde~~LieIL~~rt~~q~~~I~~~Y~~~y~~~L~~di~se~sG~~~~ll~~l 165 (470)
+||+.|++|++|+|+|+..+|+|||+||+.|++.|+++|+..||++|+++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 599999999999999999999999999999999999999999999999999999999999999875
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.64 E-value=8.4e-16 Score=119.78 Aligned_cols=66 Identities=53% Similarity=0.771 Sum_probs=63.5
Q ss_pred HHHHHHHhhhcCCCCChhhHHHHhhhCCHHHHHHHHHHHHhhhCCcHHHHHhhcCcHHHHHHHHHH
Q psy18129 403 YLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLAL 468 (470)
Q Consensus 403 ~~A~~L~~A~~g~gtd~~~Lirilv~rs~~~l~~I~~~Y~~~yg~sL~~~I~~e~sGdy~~~LLal 468 (470)
++|+.|++|++|+|+|+..|++|+++||+.|+..|+++|++.||++|.++|++++||||+++||+|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 579999999999999999999999999999999999999999999999999999999999999986
No 5
>smart00335 ANX Annexin repeats.
Probab=99.38 E-value=7.2e-13 Score=98.72 Aligned_cols=53 Identities=51% Similarity=0.819 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcHHHhhhcCCCcchHHHHHHh
Q psy18129 113 GTDEKALVEILTTLSNFGIRTITQVYETAYKASLEKDIKGDTSGHFKRLLVSL 165 (470)
Q Consensus 113 gtde~~LieIL~~rt~~q~~~I~~~Y~~~y~~~L~~di~se~sG~~~~ll~~l 165 (470)
||||..|++|+|+||+.|++.|+.+|+..||++|.++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999999875
No 6
>smart00335 ANX Annexin repeats.
Probab=99.30 E-value=4.8e-12 Score=94.26 Aligned_cols=53 Identities=57% Similarity=0.874 Sum_probs=51.7
Q ss_pred CCChhhHHHHhhhCCHHHHHHHHHHHHhhhCCcHHHHHhhcCcHHHHHHHHHH
Q psy18129 416 GTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLAL 468 (470)
Q Consensus 416 gtd~~~Lirilv~rs~~~l~~I~~~Y~~~yg~sL~~~I~~e~sGdy~~~LLal 468 (470)
|||+..|++|+++|++.|+..|+.+|++.||++|.++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999999975
No 7
>PF14003 YlbE: YlbE-like protein
Probab=45.26 E-value=43 Score=26.05 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=36.0
Q ss_pred chhHHhhcCCHHHHHHHHHHHHHhcCCCHHHHHhhccCC-ChHHHHHHHH
Q psy18129 346 TFNSILVTRSYQQLRRTFKEYEELAGHDIEDAIKGEMSG-GVKDGFLSIV 394 (470)
Q Consensus 346 ~li~Il~~Rs~~~L~~I~~~Y~~~yg~sL~~~I~~e~sG-d~~~~Llall 394 (470)
.|-++| +|.|.++...-.++...||+++-+.|++-..| .+-..++.++
T Consensus 13 ~WYR~L-sR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M~ 61 (65)
T PF14003_consen 13 IWYRIL-SRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEMF 61 (65)
T ss_pred HHHHHH-ccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHHH
Confidence 466666 59999999999999999999999999864333 2344444443
No 8
>PF14003 YlbE: YlbE-like protein
Probab=34.02 E-value=60 Score=25.22 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=31.2
Q ss_pred hHHHHhhhCCHHHHHHHHHHHHhhhCCcHHHHHhhcC
Q psy18129 421 TLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDC 457 (470)
Q Consensus 421 ~Lirilv~rs~~~l~~I~~~Y~~~yg~sL~~~I~~e~ 457 (470)
.+-|+|. |.+.++...-.++..-||+++.+.|.+-.
T Consensus 13 ~WYR~Ls-R~P~~l~~fe~~a~~~y~kT~p~rVek~~ 48 (65)
T PF14003_consen 13 IWYRILS-RNPEELEAFEKEAKHFYKKTIPHRVEKFS 48 (65)
T ss_pred HHHHHHc-cCHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4567766 99999999999999999999999998643
No 9
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=25.51 E-value=96 Score=31.61 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=24.1
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHHhhh
Q psy18129 237 TDEKAIIDILAKRSIVQRMEITDAFKTLYGK 267 (470)
Q Consensus 237 tde~~li~IL~~rs~~q~~~I~~~Y~~~y~k 267 (470)
||-+.+-.+=.+...+|+.+|.+.|+.-|++
T Consensus 20 TDF~~m~~~d~s~~~~e~~A~l~E~r~DyNr 50 (337)
T TIGR02029 20 TDFEEMANLDVSPVENEWDAMLAEMKADYNR 50 (337)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccc
Confidence 4555555555667788999999999998887
No 10
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=25.33 E-value=97 Score=31.86 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=25.0
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHHhhh
Q psy18129 237 TDEKAIIDILAKRSIVQRMEITDAFKTLYGK 267 (470)
Q Consensus 237 tde~~li~IL~~rs~~q~~~I~~~Y~~~y~k 267 (470)
||-+.+-.+=.+...+||.+|.+.|+.-|++
T Consensus 30 TDF~~m~~~d~s~~~~e~~A~l~E~r~DyNr 60 (355)
T PRK13654 30 TDFDAMAKLDLSPNREELDAILEEMRADYNR 60 (355)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccc
Confidence 5666666666777889999999999998887
No 11
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=25.13 E-value=96 Score=31.78 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=24.9
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHHhhh
Q psy18129 237 TDEKAIIDILAKRSIVQRMEITDAFKTLYGK 267 (470)
Q Consensus 237 tde~~li~IL~~rs~~q~~~I~~~Y~~~y~k 267 (470)
||-+.+-.+=.+...+|+.+|.+.|+.-|++
T Consensus 26 TDF~~m~~~dis~~~~e~~A~l~E~r~DyNr 56 (351)
T CHL00185 26 TDFDEMANYDISSNIEEIEAILEEFRADYNQ 56 (351)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccc
Confidence 5556666666777889999999999998887
No 12
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=24.55 E-value=1e+02 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=23.6
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHHhhh
Q psy18129 237 TDEKAIIDILAKRSIVQRMEITDAFKTLYGK 267 (470)
Q Consensus 237 tde~~li~IL~~rs~~q~~~I~~~Y~~~y~k 267 (470)
||-+.+-.+=.+...+|+.+|.+.|+.-|++
T Consensus 10 TDF~~m~~~dis~~~~e~~A~l~E~r~DyNr 40 (323)
T cd01047 10 TDFDEMAALDISKNREEFEAMLAEFKADYNR 40 (323)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccc
Confidence 4555555555666778999999999998887
No 13
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=21.88 E-value=1.2e+02 Score=24.54 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHHHhhh
Q psy18129 249 RSIVQRMEITDAFKTLYGK 267 (470)
Q Consensus 249 rs~~q~~~I~~~Y~~~y~k 267 (470)
-+++++.+|+++|+..|.+
T Consensus 28 fs~~~i~~l~~ayr~l~~~ 46 (83)
T PF13720_consen 28 FSKEEISALRRAYRILFRS 46 (83)
T ss_dssp S-HHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 3778999999999999975
No 14
>PHA01794 hypothetical protein
Probab=21.65 E-value=5e+02 Score=22.95 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=26.5
Q ss_pred CHHHHHHHHhc-----CCHHHHHHHHHHHHHHh------hhcHHHhhhcCC--CcchHHHHHHhh
Q psy18129 115 DEKALVEILTT-----LSNFGIRTITQVYETAY------KASLEKDIKGDT--SGHFKRLLVSLS 166 (470)
Q Consensus 115 de~~LieIL~~-----rt~~q~~~I~~~Y~~~y------~~~L~~di~se~--sG~~~~ll~~ll 166 (470)
|++.|+++|-- -|+.++..-...|-..+ -..|.++|.+|+ ||-|+.-+.-++
T Consensus 34 dd~Alvdllrl~~~~~lted~~~~aI~d~v~~~~~Ee~~~e~lF~eleqEm~~SGFF~~ki~kyi 98 (134)
T PHA01794 34 DESAIVDLVRLSAKKALTEDEILDAIADFVETFEDEEGTTEGLFAELEKEMVDSGFFRAKIKKYI 98 (134)
T ss_pred chHHHHHHHHHHhccccChhhHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55566665544 44444433333333221 134667777764 677766555444
No 15
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=21.19 E-value=2.5e+02 Score=19.63 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCCC-HHHHHHHhh-cCCHHHHH
Q psy18129 223 ADAEALRAAMKGLGTD-EKAIIDILA-KRSIVQRM 255 (470)
Q Consensus 223 ~dA~~L~~A~kG~gtd-e~~li~IL~-~rs~~q~~ 255 (470)
.+-..|.+|++-.|++ -+.|-+.+. +||+.|..
T Consensus 7 eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~ 41 (48)
T PF00249_consen 7 EEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCR 41 (48)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHH
Confidence 4556788999999999 999999999 99988743
Done!