RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18132
(64 letters)
>gnl|CDD|201070 pfam00191, Annexin, Annexin. This family of annexins also
includes giardin that has been shown to function as an
annexin.
Length = 66
Score = 67.1 bits (165), Expect = 4e-17
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 13 YLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
Y A L+ AM G+GTD+ TLIRI+ TRS L I++ + KLYGK LE+ IK
Sbjct: 1 YDAELLRAAMKGLGTDEDTLIRILATRSNAQLQAIREAYKKLYGKDLEKDIK 52
>gnl|CDD|197661 smart00335, ANX, Annexin repeats.
Length = 53
Score = 56.3 bits (137), Expect = 5e-13
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 26 GTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
GTD+KTLI I+ +RS L IKQ + K YGK LE+ IK
Sbjct: 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIK 39
>gnl|CDD|182293 PRK10189, PRK10189, MATE family multidrug exporter; Provisional.
Length = 478
Score = 27.0 bits (60), Expect = 0.50
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 11 SSYLARRL-KDAMAGIGTDDKTLIRIIVTRSEIDLG 45
S++L L K+AMAG+G D + I+ + IDLG
Sbjct: 52 STFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLG 87
>gnl|CDD|129331 TIGR00228, ruvC, crossover junction endodeoxyribonuclease RuvC.
Endonuclease that resolves Holliday junction
intermediates in genetic recombination. The active form
of the protein is a dimer. Structure studies reveals
that the catalytic center, comprised of four acidic
residues, lies at the bottom of a cleft that fits a DNA
duplex. The model hits a single Synechocystis PCC6803
protein at a score of 30, below the trusted cutoff, that
appears orthologous and may act as authentic RuvC [DNA
metabolism, DNA replication, recombination, and repair].
Length = 156
Score = 25.7 bits (56), Expect = 1.4
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 13 YLARRLKDAMAGIGTDDKTLIRIIVTR 39
Y AR++K + GIG+ +K+ ++ +V R
Sbjct: 99 YAARQVKQTVVGIGSAEKSQVQHMVRR 125
>gnl|CDD|179427 PRK02471, PRK02471, bifunctional glutamate--cysteine
ligase/glutathione synthetase; Provisional.
Length = 752
Score = 25.7 bits (57), Expect = 1.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 40 SEIDLGDIKQNFLKLYGKTLE 60
+I LG+I++ LK G T +
Sbjct: 627 EKIQLGEIERLMLKQQGLTPD 647
>gnl|CDD|133086 cd06228, M14-like_3, Peptidase M14-like domain; uncharacterized
subfamily. A functionally uncharacterized subgroup of
the M14 family of metallocarboxypeptidases (MCPs). The
M14 family are zinc-binding carboxypeptidases (CPs)
which hydrolyze single, C-terminal amino acids from
polypeptide chains, and have a recognition site for the
free C-terminal carboxyl group, which is a key
determinant of specificity. Two major subfamilies of the
M14 family, defined based on sequence and structural
homology, are the A/B and N/E subfamilies. Enzymes
belonging to the A/B subfamily are normally synthesized
as inactive precursors containing preceding signal
peptide, followed by an N-terminal pro-region linked to
the enzyme; these proenzymes are called
procarboxypeptidases. The A/B enzymes can be further
divided based on their substrate specificity;
Carboxypeptidase A-like (CPA-like) enzymes favor
hydrophobic residues while carboxypeptidase B-like
(CPB-like) enzymes only cleave the basic residues lysine
or arginine. The A forms have slightly different
specificities, with Carboxypeptidase A1 (CPA1)
preferring aliphatic and small aromatic residues, and
CPA2 preferring the bulky aromatic side chains. Enzymes
belonging to the N/E subfamily enzymes are not produced
as inactive precursors and instead rely on their
substrate specificity and subcellular
compartmentalization to prevent inappropriate cleavages.
They contain an extra C-terminal transthyretin-like
domain, thought to be involved in folding or formation
of oligomers. MCPs can also be classified based on
their involvement in specific physiological processes;
the pancreatic MCPs participate only in alimentary
digestion and include carboxypeptidase A and B (A/B
subfamily), while others, namely regulatory MCPs or the
N/E subfamily, are involved in more selective reactions,
mainly in non-digestive tissues and fluids, acting on
blood coagulation/fibrinolysis, inflammation and local
anaphylaxis, pro-hormone and neuropeptide processing,
cellular response and others. Another MCP subfamily,
is that of succinylglutamate desuccinylase
/aspartoacylase, which hydrolyzes N-acetyl-L-aspartate
(NAA), and deficiency in which is the established cause
of Canavan disease. Another subfamily (referred to as
subfamily C) includes an exceptional type of activity in
the MCP family, that of dipeptidyl-peptidase activity of
gamma-glutamyl-(L)-meso-diaminopimelate peptidase I
which is involved in bacterial cell wall metabolism.
Length = 332
Score = 25.5 bits (56), Expect = 1.9
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 8 KDKSSYLARRLKDAMAGIGTD 28
D + LA R+ AMA
Sbjct: 241 WDAAVNLAARMGLAMAAARGR 261
>gnl|CDD|163497 TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system
histidine kinase. This histidine kinase protein is
paired with an adjacent response regulator (TIGR03787)
gene. It co-occurs with a variant sortase enzyme
(TIGR03784), usually in the same gene neighborhood, in
proteobacterial species most of which are marine, and
with an LPXTG motif-containing sortase target conserved
protein (TIGR03788). Sortases and LPXTG proteins are far
more common in Gram-positive bacteria, where sortase
systems mediate attachment to the cell wall or
cross-linking of pilin structures. We give this
predicted sensor histidine kinase the gene symbol psdS,
for Proteobacterial Dedicated Sortase system Sensor
histidine kinase.
Length = 703
Score = 25.1 bits (55), Expect = 2.7
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 16 RRL-KDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEY 62
RRL DA A I + + I +RS ++GD+ ++F ++ + L +Y
Sbjct: 435 RRLSDDAEAAIDSQGRISGAIPASRSRDEIGDLSRSFAQMVAR-LRQY 481
>gnl|CDD|224202 COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and
metabolism].
Length = 533
Score = 24.1 bits (53), Expect = 5.1
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 18 LKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
L+ A++ + T D L R +V R K+ +L ++ + ++
Sbjct: 455 LRLAISVLVTGDLELARRLVER--------KKRVRRLERRSSKRHLD 493
>gnl|CDD|202731 pfam03705, CheR_N, CheR methyltransferase, all-alpha domain.
CheR proteins are part of the chemotaxis signaling
mechanism in bacteria. CheR methylates the chemotaxis
receptor at specific glutamate residues. CheR is an
S-adenosylmethionine- dependent methyltransferase.
Length = 57
Score = 22.8 bits (50), Expect = 7.1
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 28 DDKTLIRIIVTRSEIDLGDIKQNFLK 53
D + ++ R+ IDL D K+ +K
Sbjct: 4 DFERFRELLYKRTGIDLTDYKRALVK 29
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.373
Gapped
Lambda K H
0.267 0.0891 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,248,489
Number of extensions: 238321
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 11
Length of query: 64
Length of database: 10,937,602
Length adjustment: 35
Effective length of query: 29
Effective length of database: 9,385,212
Effective search space: 272171148
Effective search space used: 272171148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (23.9 bits)