RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18132
(64 letters)
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein;
2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A
1ycn_A 2q4c_A 1dk5_A
Length = 321
Score = 75.4 bits (185), Expect = 2e-18
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
++C+ Y + L+ A+ GTD+ L R++ TR+E+DL I + + L I
Sbjct: 241 VKCLVYPEKYFEKVLRLAINRRGTDEGALTRVVCTRAEVDLKVIADEYQRRNSVPLTRAI 300
Query: 64 K 64
Sbjct: 301 V 301
Score = 53.0 bits (127), Expect = 2e-10
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 6 CVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
D + A +A + ++ L+ I TRS L +Q + Y K+LEE +
Sbjct: 85 WALDPAERDALLANEATKRWTSSNQVLMEIACTRSANQLLHARQAYHARYKKSLEEDVA 143
Score = 49.9 bits (119), Expect = 2e-09
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 15 ARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
+L+ A +G GT++ +I I+ R+ I++ + + YG+ L + +
Sbjct: 22 CEQLRKAFSGWGTNEGLIIDILGHRNAEQRNLIRKTYAETYGEDLLKALD 71
Score = 40.3 bits (94), Expect = 6e-06
Identities = 10/49 (20%), Positives = 24/49 (48%)
Query: 15 ARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
A+ L + ++ D +IR++ TRS+ + ++ YG + + +
Sbjct: 177 AKLLHEKISNKAYSDDDVIRVLATRSKAQINATLNHYKNEYGNDINKDL 225
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein
complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Length = 323
Score = 75.4 bits (185), Expect = 2e-18
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 1 MSRMQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLE 60
++ + CV++ ++LA RL A+ GIGTD+ TL RI+V+RSEIDL DI+ F K YG +L
Sbjct: 241 LAIVNCVRNTPAFLAERLHRALKGIGTDEFTLNRIMVSRSEIDLLDIRTEFKKHYGYSLY 300
Query: 61 EYIK 64
IK
Sbjct: 301 SAIK 304
Score = 57.3 bits (138), Expect = 6e-12
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
+ V + + A++LK +M G GT++ LI I+ TR+ + DI Q + +Y K+L + I
Sbjct: 85 VALVTPPAVFDAKQLKKSMKGAGTNEDALIEILTTRTSRQMKDISQAYYTVYKKSLGDDI 144
Query: 64 K 64
Sbjct: 145 S 145
Score = 49.9 bits (119), Expect = 2e-09
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 15 ARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A ++ A+ GIGTD+K LI I+ RS I + + YGK L++ +K
Sbjct: 24 AEAIQKAIRGIGTDEKMLISILTERSNAQRQLIVKEYQAAYGKELKDDLK 73
Score = 37.6 bits (87), Expect = 6e-05
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 15 ARRLKDAMAG-IGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A+ L A GTD+ I+ RS L + + K + + IK
Sbjct: 179 AQILYKAGENRWGTDEDKFTEILCLRSFPQLKLTFDEYRNISQKDIVDSIK 229
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A
{Giardia intestinalis} PDB: 2iic_A
Length = 310
Score = 74.9 bits (184), Expect = 2e-18
Identities = 7/60 (11%), Positives = 15/60 (25%)
Query: 5 QCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
+ +A A+ D +T DL +G ++ +
Sbjct: 227 YYNLAPARAVAYAFHSAVETQNDDMAYEQAARITGLFHDLHKFAWVHYACWGVMRDDILS 286
Score = 46.4 bits (110), Expect = 5e-08
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 13 YLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
+K AM D + + +++ + + + Q + + G L +
Sbjct: 79 ARVNVIKKAMKN-VNDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQDFV 129
Score = 44.8 bits (106), Expect = 1e-07
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 15 ARRLKDAMAG-IGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A LK + D + ++R+I+T + + +I F L GK+++E I+
Sbjct: 160 AEVLKHNLIDADEPDHEAVVRLIITSTADEYKEINHRFEVLTGKSVQEAIE 210
Score = 39.1 bits (91), Expect = 2e-05
Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 14 LARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
+K + +++ L+ S + +++ F G ++K
Sbjct: 9 AIPEVKAILEA--KNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLK 57
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane
binding, matrix vessicle, protein and metal binding
protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A
1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A
1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A
1bcw_A 2ran_A ...
Length = 320
Score = 73.5 bits (180), Expect = 8e-18
Identities = 28/61 (45%), Positives = 42/61 (68%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
++C++ +Y A L +M G GTDD TLIR++V+RSEIDL DI+ F K + K+L + I
Sbjct: 240 VKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQMI 299
Query: 64 K 64
+
Sbjct: 300 Q 300
Score = 56.1 bits (135), Expect = 2e-11
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 6 CVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
++ + A LK A+ G GT++K L I+ +R+ ++ +IKQ +++ Y LE+ I
Sbjct: 83 LMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKIT 141
Score = 50.0 bits (119), Expect = 3e-09
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 15 ARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A L+ AM G+GTD++T+++I+ +R+ +I F L+G+ L + +K
Sbjct: 20 AEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLK 69
Score = 37.2 bits (86), Expect = 9e-05
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 15 ARRLKDAMAG-IGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A+ L A GTD++T I I+ TRS L + ++ + G +EE I
Sbjct: 175 AQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETID 225
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation,
mutant T356D, lipid binding protein; 2.65A {Homo
sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Length = 672
Score = 73.9 bits (181), Expect = 1e-17
Identities = 30/61 (49%), Positives = 45/61 (73%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
+Q VK+K + A +L +M G GTDDKTL RI+V+RSEIDL +I++ F++ Y K+L + I
Sbjct: 593 VQSVKNKPLFFADKLYKSMKGAGTDDKTLTRIMVSRSEIDLLNIRREFIEKYDKSLHQAI 652
Query: 64 K 64
+
Sbjct: 653 E 653
Score = 73.1 bits (179), Expect = 2e-17
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 3 RMQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEY 62
++C++ Y A RL AM G+GT D TLIRI+V+RSE+D+ DI++ F Y K+L
Sbjct: 244 VVKCIRSTPEYFAERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKYEKSLYSM 303
Query: 63 IK 64
IK
Sbjct: 304 IK 305
Score = 59.7 bits (144), Expect = 1e-12
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
+ + + Y A++LK AM G GTD+K LI I+ TR+ ++ I + + + Y K+LE+ +
Sbjct: 429 LGLMMPPAHYDAKQLKKAMEGAGTDEKALIEILATRTNAEIRAINEAYKEDYHKSLEDAL 488
Query: 64 K 64
Sbjct: 489 S 489
Score = 57.7 bits (139), Expect = 4e-12
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
+ ++ + A+ +KDA++GIGTD+K LI I+ +R+ + + + Y + LE I
Sbjct: 86 VGLMRPPAYCDAKEIKDAISGIGTDEKCLIEILASRTNEQMHQLVAAYKDAYERDLEADI 145
Query: 64 K 64
Sbjct: 146 I 146
Score = 50.8 bits (121), Expect = 1e-09
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 15 ARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A L AM G G+D + ++ II +RS ++ Q++ LYGK L +K
Sbjct: 25 AEALYTAMKGFGSDKEAILDIITSRSNRQRQEVCQSYKSLYGKDLIADLK 74
Score = 48.1 bits (114), Expect = 1e-08
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 15 ARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A+ L+ AM G+GTD+ T+I II RS + I+Q F +G+ L +K
Sbjct: 368 AKALRKAMKGLGTDEDTIIDIITHRSNVQRQQIRQTFKSHFGRDLMTDLK 417
Score = 38.5 bits (89), Expect = 3e-05
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 15 ARRLKDAMAG-IGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
+ L +A GTD+ I I+ RS+ L + +LK GK +E I+
Sbjct: 180 VQDLYEAGELKWGTDEAQFIYILGNRSKQHLRLVFDEYLKTTGKPIEASIR 230
Score = 36.9 bits (85), Expect = 1e-04
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 15 ARRLKDAMAG-IGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
+ D +G + + + I+ TRS L + Q F+K+ +E IK
Sbjct: 528 ILEIADTPSGDKTSLETRFMTILCTRSYPHLRRVFQEFIKMTNYDVEHTIK 578
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent
hexamerization switch E76, low calcium form; 1.93A
{Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Length = 315
Score = 72.7 bits (178), Expect = 2e-17
Identities = 33/64 (51%), Positives = 49/64 (76%)
Query: 1 MSRMQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLE 60
++ ++ V+++ +Y A RL AM G+GT DKTLIRI+V+RSEIDL +IK+ F +YGK+L
Sbjct: 235 LAIVKSVENRFAYFAERLHHAMKGLGTSDKTLIRILVSRSEIDLANIKETFQAMYGKSLY 294
Query: 61 EYIK 64
E+I
Sbjct: 295 EFIA 298
Score = 57.6 bits (139), Expect = 5e-12
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 3 RMQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEY 62
+ ++ +LA +L AM G+GTD LI I+ T+S + IK F LY + LE+
Sbjct: 78 ALALLRKPDEFLAEQLHAAMKGLGTDKNALIDILCTQSNAQIHAIKAAFKLLYKEDLEKE 137
Query: 63 IK 64
I
Sbjct: 138 II 139
Score = 49.6 bits (118), Expect = 4e-09
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 15 ARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A L+ AM GIGTD+K++ I+ TRS IK ++ L+GK LE+ +K
Sbjct: 18 AETLRKAMKGIGTDEKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELK 67
Score = 37.6 bits (87), Expect = 6e-05
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 15 ARRLKDAMAG-IGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A + A G IGTD+ ++ TRS L I + K+ KT+ + I+
Sbjct: 173 AAAIYQAGEGQIGTDESRFNAVLATRSYPQLHQIFHEYSKISNKTILQAIE 223
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal
binding protein, calcium, calcium/phospholipid-binding;
1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A
1i4a_A 1aow_A
Length = 322
Score = 72.3 bits (177), Expect = 2e-17
Identities = 32/61 (52%), Positives = 49/61 (80%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
++C+++K +Y A RL +M G+GTDD TLIR++V+R+EID+ DI+ NF +LYGK+L +I
Sbjct: 243 VKCMRNKPAYFAERLYKSMKGLGTDDSTLIRVMVSRAEIDMLDIRANFKRLYGKSLYSFI 302
Query: 64 K 64
K
Sbjct: 303 K 303
Score = 59.2 bits (143), Expect = 1e-12
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 6 CVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
+ Y + L+ AM G GTD+ LI I+ +R+ ++ I Q + + YG++LEE I
Sbjct: 86 MMTPTVLYDVQELRRAMKGAGTDEGCLIEILASRNPEEIRRINQTYQQQYGRSLEEDIC 144
Score = 50.3 bits (120), Expect = 2e-09
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 15 ARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A+ L+ AM G+GTD+ +I ++ R+ +I+ + G+ L E +K
Sbjct: 23 AQVLRKAMKGLGTDEDAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLK 72
Score = 38.4 bits (89), Expect = 3e-05
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 15 ARRLKDAMAG-IGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A+ L +A GTD+ + I+ +R+ L + + ++ K +E+ IK
Sbjct: 178 AQDLYEAGEKRWGTDEVKFLSILCSRNRNHLLHVFDEYKRISQKDIEQSIK 228
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein,
helix BUN heparin, hexasaccharide, metal binding
protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB:
2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Length = 308
Score = 71.9 bits (176), Expect = 2e-17
Identities = 31/61 (50%), Positives = 44/61 (72%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
+QC+++K Y A RL D+M G GT DK LIRI+V+RSE+D+ I+ F + YGK+L YI
Sbjct: 229 VQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIRSEFKRKYGKSLYYYI 288
Query: 64 K 64
+
Sbjct: 289 Q 289
Score = 57.2 bits (138), Expect = 7e-12
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
+ +K + Y A LK +M G+GTD+ +LI II +R+ +L +I + + ++Y LE+ I
Sbjct: 69 LGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDI 128
Query: 64 K 64
Sbjct: 129 I 129
Score = 51.1 bits (122), Expect = 9e-10
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 15 ARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A ++ A+ G D+ T++ I+ RS DI + + K L +K
Sbjct: 8 ALNIETAIKTKGVDEVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALK 57
Score = 38.0 bits (88), Expect = 4e-05
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 15 ARRLKDAMAG-IGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
AR L DA GTD I I+ RS L + + + E I+
Sbjct: 164 ARDLYDAGVKRKGTDVPKWISIMTERSVPHLQKVFDRYKSYSPYDMLESIR 214
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form,
FULL-length protein comprising protein core and
N-terminal domain, metal; 1.80A {Sus scrofa} SCOP:
a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Length = 346
Score = 71.6 bits (175), Expect = 4e-17
Identities = 31/61 (50%), Positives = 41/61 (67%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
++C K + A +L AM GIGT KTLIRI+V+RSEID+ DIK + KLYG +L + I
Sbjct: 268 VKCATSKPMFFAEKLHQAMKGIGTRHKTLIRIMVSRSEIDMNDIKACYQKLYGISLCQAI 327
Query: 64 K 64
Sbjct: 328 L 328
Score = 55.4 bits (133), Expect = 3e-11
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
+ +K + + A L+ AM G+GTD+ TL I+ +R+ ++ +I + + + + L + I
Sbjct: 109 LALLKTPAQFDADELRAAMKGLGTDEDTLNEILASRTNREIREINRVYKEELKRDLAKDI 168
Query: 64 K 64
Sbjct: 169 T 169
Score = 50.0 bits (119), Expect = 3e-09
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 15 ARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
L A+ G D+ T+I I+ R+ IK +L+ GK L+E +K
Sbjct: 48 VEALHKAITVKGVDEATIIEILTKRTNAQRQQIKAAYLQEKGKPLDEALK 97
Score = 40.0 bits (93), Expect = 7e-06
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 15 ARRLKDAMAG-IGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
AR L +A GTD I I+ TRS L + Q + K + + +
Sbjct: 203 ARALYEAGERRKGTDLNVFITILTTRSYPHLRRVFQKYSKYSKHDMNKVLD 253
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid
binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Length = 327
Score = 71.5 bits (175), Expect = 4e-17
Identities = 34/61 (55%), Positives = 41/61 (67%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
++C ++ SY A RL AM G GT D TLIR IV+RSEIDL IK +F K+YGKTL I
Sbjct: 248 VKCTQNLHSYFAERLYYAMKGAGTRDGTLIRNIVSRSEIDLNLIKCHFKKMYGKTLSSMI 307
Query: 64 K 64
Sbjct: 308 M 308
Score = 55.4 bits (133), Expect = 3e-11
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 6 CVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
+ Y A+ L DAM G+GT + +I I+ +R++ L +I + + + YG +LEE I+
Sbjct: 90 LMYPPYRYEAKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYGSSLEEDIQ 148
Score = 50.4 bits (120), Expect = 2e-09
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 15 ARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A L AM GIGT+++ +I ++ RS I ++F +GK L E +K
Sbjct: 27 AETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLK 76
Score = 37.3 bits (86), Expect = 8e-05
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 15 ARRLKDAMAG-IGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A+ L A GTD+ I I+ TRS L + + + K+ K++E+ IK
Sbjct: 183 AQDLYAAGEKIRGTDEMKFITILCTRSATHLLRVFEEYEKIANKSIEDSIK 233
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein;
1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Length = 337
Score = 69.3 bits (169), Expect = 4e-16
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
+ D A + A AG G+D L RI + K + K+YG+ +E
Sbjct: 237 HDFLYDPCCAAAFSMNVAFAGSGSDSNRLNRITAMHFR-ECKGCKYYYKKVYGQAFDERC 295
Query: 64 K 64
Sbjct: 296 A 296
Score = 58.1 bits (140), Expect = 4e-12
Identities = 15/61 (24%), Positives = 35/61 (57%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
+ K ++ L ++ A G GTD+K L+ +++T ++ +I+Q + +LY +L + +
Sbjct: 76 LMLYKPRAQLLCELIRGATKGAGTDEKCLVDVLLTIETHEVREIRQLYYQLYNDSLGDVV 135
Query: 64 K 64
+
Sbjct: 136 R 136
Score = 37.7 bits (87), Expect = 5e-05
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 9 DKSSYLARRLKDAMAGIGTDDK--TLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
S+ + ++ + + K LI I + L ++++ F + G L+ ++K
Sbjct: 7 QMSTGVTAVVQKVVEACQDESKRLDLIEIARSYPPNQLRNMQRTFQAITGTFLDAFLK 64
Score = 26.5 bits (58), Expect = 0.53
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 15 ARRLKDAMAGI---GTDDKTLIRIIVTRSEIDLGDIKQNFLKLY-GKTLEEYI 63
++ A+ + T IRI T + D + + + Y G +L +
Sbjct: 169 LVLVRKAIETKGVKKDEVSTWIRIFATYTRADFRQLHKMYSAKYNGDSLRAGV 221
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding
protein, membrane-binding protein, binding protein;
1.90A {Giardia intestinalis} PDB: 4evh_A
Length = 295
Score = 51.7 bits (124), Expect = 5e-10
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 MQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYI 63
M D+ A+ ++DA++G D ++ + D + + +++ K L E
Sbjct: 68 MDLFSDRHEVRAQHIRDALSG-RNDHMAFFDTVILCTPEDWHETVAAYTRMFKKPLVEDF 126
Query: 64 K 64
Sbjct: 127 M 127
Score = 43.6 bits (103), Expect = 4e-07
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 15 ARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
A+RL A + LI T + I + F GK++E+ I
Sbjct: 159 AQRLDQA--FDQKNTAYLIDFFGTVPSAEYRPIAEAFKAQNGKSIEQAIA 206
Score = 43.3 bits (102), Expect = 6e-07
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 5 QCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEY 62
+ A + A G + + RI + L K K+YG +
Sbjct: 222 FALLGMHRLAAYLINCACNDKGDEK-RMRRITGMMVDKCL-GAKH-AYKIYGDMGTDI 276
Score = 40.9 bits (96), Expect = 4e-06
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 12 SYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
+ +A LK A+ D+ + I S I + ++ YGK L + IK
Sbjct: 5 TDIANELKQAIDA--KDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIK 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 0.53
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 12/26 (46%)
Query: 47 IK--QNFLKLYG----------KTLE 60
+K Q LKLY T+E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Chromobacterium violaceum}
Length = 407
Score = 25.5 bits (54), Expect = 1.3
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 9 DKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYGKTLEEYIK 64
+ +A AG G D L +I +G IK N+L +Y + +Y
Sbjct: 158 RSAGAPMLYSANAAAGQGMADSDLWDMISD----QIGKIKDNYLGVYENVVGQYTD 209
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding,
exonucle binding, mitochondrion, rRNA processing; 3.00A
{Saccharomyces cerevisiae}
Length = 977
Score = 23.2 bits (50), Expect = 7.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 9 DKSSYLARRLKDAMAGIGTDDKTLIRIIVTRS 40
+ S LA L + TL+RI+ TR
Sbjct: 757 ESSKALADSLDRCVDPEDPYFNTLVRIMSTRC 788
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.373
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 985,987
Number of extensions: 45819
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 59
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)