BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18133
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus
GN=Rabggtb PE=1 SV=2
Length = 339
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 113/178 (63%), Gaps = 16/178 (8%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
+GKLDAIN+ KA+EF+LSC NFDGGFG RPGSESHAG YCC GFL+IT LH++++D L
Sbjct: 164 LGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLL 223
Query: 66 AWWLAERGDHSSD-NLQPSQL-----SWYNFVRAHFEGDFFSGRFCNRASLVSL-----D 114
WWL ER S N +P +L SW+ G + +R L S D
Sbjct: 224 GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRL---HWIDREKLRSFILACQD 280
Query: 115 VESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQ 172
E+GG +DRP D+ DPFHTLFG+A L++L + PV P +CMP V++R+N+ P+
Sbjct: 281 EETGGFADRPGDMVDPFHTLFGIAGLSLLGE--EQIKPVSPVFCMPEEVLQRVNVQPE 336
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID 61
V +G+L +N + + FI SC + GG + G + H T V L++ +H I+
Sbjct: 64 VMDLMGQLHRMNREEILVFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHVIN 123
Query: 62 ADKLA 66
DK+
Sbjct: 124 VDKVV 128
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus
GN=Rabggtb PE=1 SV=1
Length = 331
Score = 166 bits (421), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 113/178 (63%), Gaps = 16/178 (8%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
+GKLDAIN+ KA+EF+LSC NFDGGFG RPGSESHAG YCC GFL+IT LH++++D L
Sbjct: 156 LGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLL 215
Query: 66 AWWLAERGDHSSD-NLQPSQL-----SWYNFVRAHFEGDFFSGRFCNRASLVSL-----D 114
WWL ER S N +P +L SW+ G + +R L S D
Sbjct: 216 GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRL---HWIDREKLRSFILACQD 272
Query: 115 VESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQ 172
E+GG +DRP D+ DPFHTLFG+A L++L + PV P +CMP V++R+N+ P+
Sbjct: 273 EETGGFADRPGDMVDPFHTLFGIAGLSLLGE--EQIKPVSPVFCMPEEVLQRVNVQPE 328
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID 61
V +G+L +N + + FI SC + GG + G + H T V L++ +H I+
Sbjct: 56 VMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVIN 115
Query: 62 ADKLA 66
DK+
Sbjct: 116 VDKVV 120
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens
GN=RABGGTB PE=1 SV=2
Length = 331
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 114/178 (64%), Gaps = 16/178 (8%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
+GKLDAIN+ KA+EF+LSC NFDGGFG RPGSESHAG YCC GFL+IT LH++++D L
Sbjct: 156 LGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLL 215
Query: 66 AWWLAERGDHSSD-NLQPSQL-----SWYNFVRAHFEGDFFSGRFCNRASLVSL-----D 114
WWL ER S N +P +L SW+ G + +R L + D
Sbjct: 216 GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRL---HWIDREKLRNFILACQD 272
Query: 115 VESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQ 172
E+GG +DRP D+ DPFHTLFG+A L++L + PV+P +CMP V++R+N+ P+
Sbjct: 273 EETGGFADRPGDMVDPFHTLFGIAGLSLLGE--EQIKPVNPVFCMPEEVLQRVNVQPE 328
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID 61
V +G+L +N + + FI SC + GG + G + H T V L++ ++ ID
Sbjct: 56 VMDLMGQLHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVID 115
Query: 62 ADKLA 66
+K+
Sbjct: 116 VNKVV 120
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus
GN=RABGGTB PE=2 SV=1
Length = 331
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 112/178 (62%), Gaps = 16/178 (8%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
+GKLDAIN+ KA+EF+LSC NFDGGFG RPGSESHAG YCC GFL+IT LH++++D L
Sbjct: 156 LGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLL 215
Query: 66 AWWLAERGDHSSD-NLQPSQL-----SWYNFVRAHFEGDFFSGRFCNRASLVSL-----D 114
WWL ER S N +P +L SW+ G + +R L S D
Sbjct: 216 GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRL---HWIDREKLRSFILACQD 272
Query: 115 VESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQ 172
E+GG +DRP D+ DPFHTLFG+A L++L + PV P +CMP V+ R+N+ P+
Sbjct: 273 EETGGFADRPGDMVDPFHTLFGIAGLSLLGE--EQIKPVSPVFCMPEEVLRRVNVQPE 328
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID 61
V +G+L +N + + FI SC + GG + G + H T V L++ ++ ID
Sbjct: 56 VMDLMGQLHRMNREEILTFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVID 115
Query: 62 ADKLA 66
+K+
Sbjct: 116 INKVV 120
>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta
OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2
Length = 335
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 96/166 (57%), Gaps = 10/166 (6%)
Query: 4 HPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDAD 63
H +G+L +N+ AV F++ C N DGGFG+RPGSESH+G YCCVG L+I G L EID D
Sbjct: 160 HLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRD 219
Query: 64 KLAWWLAERG-DHSSDNLQPSQL-----SWYNFVRAHFEG--DFFSGRFCNRASLVSLDV 115
+ A WLA R D N +P +L SW+ G +F + D
Sbjct: 220 RTAEWLAFRQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLNFIDSDAMKKFIYACQDD 279
Query: 116 ESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPR 161
E+GG +DRP D DPFHT+FG+AAL++ T + VDP +CM +
Sbjct: 280 ETGGFADRPGDCADPFHTVFGIAALSLFGDDTLE--SVDPIFCMTK 323
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 8 KLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAW 67
+L+ ++ + V ++L C N DGG+G PG +SH T C V L I + + DAD ++
Sbjct: 68 QLERMSTEEIVNYVLGCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFNSIEKADADTISE 127
Query: 68 WL 69
++
Sbjct: 128 YV 129
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta
OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1
Length = 339
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Query: 9 LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWW 68
LD IN KAVE+ILSC NFDGGFGS PG+ESHAG + CVG LSI +++ID DKL WW
Sbjct: 163 LDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTCVGALSILNEINKIDIDKLGWW 222
Query: 69 LAERG-DHSSDNLQPSQ-----LSWY--NFVRAHFEGDFFSGRFCNRASLVSLDVESGGI 120
L+ER + N +P + SW+ + + A + L D E+GGI
Sbjct: 223 LSERQLPNGGLNGRPEKSSDVCYSWWVLSALSAIDRLHWIDNDKLKSYILKCQDNETGGI 282
Query: 121 SDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLN 170
+D+P DIPD FHT FG+ L+++ + +DP Y + +++L LN
Sbjct: 283 ADKPGDIPDVFHTFFGICGLSLMGYFKDQIESIDPVYALGTKTLQKLGLN 332
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 10 DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLA 66
D ++ ++ ++++LSC +GGFG + H T V L L +ID + +
Sbjct: 68 DKLDKNEVIQWLLSCQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVV 124
>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ptb1 PE=3 SV=1
Length = 311
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 16/175 (9%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
+GKLD +N + AV++++ C NFDGGFG PG+ESH + + CV L I L ID + L
Sbjct: 142 LGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMVFTCVAALKILNKLDLIDEELL 201
Query: 66 AWWLAERGDHSSD-NLQPSQL-----SWYNFVRAHFEGDFFSGRFCNRASLVSL-----D 114
WW++ER N +P +L W++ G + +R L+ D
Sbjct: 202 GWWISERQVKGGGLNGRPEKLPDSCYGWWDLSPLAIIGKL---DWIDRNQLIDFLLGTQD 258
Query: 115 VESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNL 169
+SGG +DR D D +HT F +A L++L P++ PVDP +C+P V +++ L
Sbjct: 259 ADSGGFADRKEDATDVYHTCFSLAGLSLL--QFPNIEPVDPRFCLPLEVTQKMKL 311
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
+ K D I+ + V F+LSC GGF PG + H T V L++ LH +D DK+
Sbjct: 46 LKKKDQIDKERIVSFLLSCLTESGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKV 105
Query: 66 A 66
A
Sbjct: 106 A 106
>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1
SV=3
Length = 325
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 96/179 (53%), Gaps = 13/179 (7%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
+G+L + + AV+F+L C NFDGGFG P +ESHA + C+G L+I L + D+L
Sbjct: 149 LGELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQAFTCLGALAIANKLDMLSDDQL 208
Query: 66 ---AWWLAERG-DHSSDNLQPSQL-----SWYNFVRAHFEG--DFFSGRFCNRASLVSLD 114
WWL ER N +PS+L SW+ G D+ + L D
Sbjct: 209 EEIGWWLCERQLPEGGLNGRPSKLPDVCYSWWVLSSLAIIGRLDWINYEKLTEFILKCQD 268
Query: 115 VESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQR 173
+ GGISDRP + D FHT+FGVA L+++ +++P+DP YCMP+ V + P +
Sbjct: 269 EKKGGISDRPENEVDVFHTVFGVAGLSLMG--YDNLVPIDPIYCMPKSVTSKFKKYPYK 325
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans
GN=BET2 PE=3 SV=1
Length = 341
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 17 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDAD----KLAWWLAER 72
A FI+ C NFDGGFG PGSESHA + CVG L+I L +D + KL WL ER
Sbjct: 173 ASAFIMQCFNFDGGFGLIPGSESHAAQVFTCVGALAIMNKLDLLDVENKKVKLIDWLTER 232
Query: 73 GDHSSD--NLQPSQL-----SWYNFVRAHF--EGDFFSGRFCNRASLVSLDVESGGISDR 123
S N +P +L SW+ ++ + L D+E+GG SDR
Sbjct: 233 QVLPSGGFNGRPEKLPDVCYSWWVLSSLSILKRKNWVDLKILENFILTCQDLENGGFSDR 292
Query: 124 PLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERL 167
P + D +HT F +A L+++D +DP YCMP V +
Sbjct: 293 PGNQTDVYHTCFAIAGLSLIDYKKYGFKEIDPVYCMPVEVTSKF 336
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium
discoideum GN=fntB PE=3 SV=1
Length = 500
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 44/165 (26%)
Query: 17 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHS 76
V+F+LSC ++GGFG+ P +E+H G T+C V LSI LH+ID + L W+ R +
Sbjct: 223 VVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSVAALSILNSLHKIDMNSLHRWITYRQSND 282
Query: 77 ------SDNLQPSQLSW-----YNFVRAHF--------------------EGDFFSG--- 102
++ L + S+ Y ++++F EG F+
Sbjct: 283 GGFEGRTNKLVDTCYSYWQGAVYIIIQSYFNYYKKQQQDDGDGKEGDQQEEGLLFNQAKL 342
Query: 103 -----RFCNRASLVSLDVESGGISDRPLDIPDPFHTLFGVAALTM 142
RFC ++ D + G SD P D +HT +G++ +++
Sbjct: 343 QEYVIRFCQQS-----DKKYSGFSDHPHRGKDYYHTCYGLSGISL 382
>sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium
discoideum GN=pggt1b PE=2 SV=1
Length = 352
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 21/157 (13%)
Query: 11 AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID--ADKLAWW 68
AIN A+++I SC +++ FG P E+H G TYC + LS+ G L ++ ++L +W
Sbjct: 184 AINKESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYCAIASLSLLGRLDVLEPFKEQLTFW 243
Query: 69 LAER---GDHSSDNLQPSQLSWYNF--------VRAHFEGDFFS-GRFCNRASLVSLDVE 116
L ++ G N P + Y F + + DF S F A ++
Sbjct: 244 LVKKQITGFCGRTNKDPD--TCYAFWIGASLMMIDRYDLIDFASINAFIGSAQHEAI--- 298
Query: 117 SGGISDRPLDIPDPFHTLFGVAALTMLDPPT-PDVLP 152
GG++ P +PD H+ + L+ + P+ V+P
Sbjct: 299 -GGVAKEPGQLPDVMHSYLSLVGLSFGNIPSIQQVIP 334
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1
Length = 382
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 39/191 (20%)
Query: 17 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHS 76
++++ C ++GG P +E+H G T+C + +++ G L ++ KL+ WL +R D +
Sbjct: 181 TLQWLCKCQTYEGGLSGVPYAEAHGGYTFCALAAIALLGGLDNLNEIKLSTWLVQRQDPA 240
Query: 77 -------SDNLQPSQLSWY----NFVRAHFEGDF----FSGRFCNRASLVSLDVE----- 116
S+ L SW+ + + A G F N L+ ++
Sbjct: 241 LYGFSGRSNKLVDGCYSWWVGASHVIVASGYGSASHKSLPNLFYNPEKLLGYILQCCQST 300
Query: 117 SGGISDRPLDIPDPFHTLFGVAALTMLDPP----TPD---------------VLPVDPTY 157
SGG+ D+P PD +HT + + L+ + T D +LP P Y
Sbjct: 301 SGGLRDKPPKRPDQYHTCYCLLGLSSIAYDYRYHTSDGWSYKPSILHSSLSSLLPAHPIY 360
Query: 158 CMPRYVIERLN 168
C+P ER+
Sbjct: 361 CVPFGFEERIK 371
>sp|Q5EAD5|PGTB1_BOVIN Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus
GN=PGGT1B PE=2 SV=1
Length = 377
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 11 AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADK----LA 66
+++ KA+ +I ++D G G ESH G T+C + L + G L E+ ++K +
Sbjct: 190 GMDMKKAINYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIK 249
Query: 67 WWLAER---GDHSSDNLQPSQLSWYNFVRAH------FEGDFFSGRFCNRASLVSL-DVE 116
W R G H N +P + +V A F+ F NR ++S D
Sbjct: 250 RWCIMRQQNGYHGRPN-KPVDTCYSFWVGATLKLLKIFQYTNFEK---NRNYILSTQDRL 305
Query: 117 SGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERL 167
GG + P PD H FG+ L++++ + V P + ERL
Sbjct: 306 VGGFAKWPDSHPDALHAYFGICGLSLMEE--SGICKVHPALNVSTRTSERL 354
>sp|Q8BUY9|PGTB1_MOUSE Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus
GN=Pggt1b PE=2 SV=1
Length = 377
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 11 AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADK----LA 66
+++ KA+ +I ++D G G ESH G T+C + L + G L E+ ++K +
Sbjct: 190 GMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIK 249
Query: 67 WWLAER---GDHSSDNLQPSQLSWYNFVRAH------FEGDFFSGRFCNRASLVSL-DVE 116
W R G H N +P + +V A F+ F NR ++S D
Sbjct: 250 RWCIMRQQNGYHGRPN-KPVDTCYSFWVGATLKLLKIFQYTNFEK---NRNYILSTQDRL 305
Query: 117 SGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERL 167
GG + P PD H FG+ L++++ + V P + ERL
Sbjct: 306 VGGFAKWPDSHPDALHAYFGICGLSLMEE--SGICKVHPALNVSTRTSERL 354
>sp|P53609|PGTB1_HUMAN Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens
GN=PGGT1B PE=1 SV=2
Length = 377
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 11 AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADK----LA 66
+++ KA+ +I ++D G G ESH G T+C + L + G L E+ ++K +
Sbjct: 190 GMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIK 249
Query: 67 WWLAER---GDHSSDNLQPSQLSWYNFVRAH------FEGDFFSGRFCNRASLVSL-DVE 116
W R G H N +P + +V A F+ F NR ++S D
Sbjct: 250 RWCIMRQQNGYHGRPN-KPVDTCYSFWVGATLKLLKIFQYTNFEK---NRNYILSTQDRL 305
Query: 117 SGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERL 167
GG + P PD H FG+ L++++ + V P + ERL
Sbjct: 306 VGGFAKWPDSHPDALHAYFGICGLSLMEE--SGICKVHPALNVSTRTSERL 354
>sp|P53610|PGTB1_RAT Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus
GN=Pggt1b PE=1 SV=1
Length = 377
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 11 AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADK----LA 66
+++ KA+ +I ++D G G ESH G T+C + L + G L E+ ++K +
Sbjct: 190 GMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIK 249
Query: 67 WWLAER---GDHSSDNLQPSQLSWYNFVRAH------FEGDFFSGRFCNRASLVSL-DVE 116
W R G H N +P + +V A F+ F NR ++S D
Sbjct: 250 RWCIMRQQNGYHGRPN-KPVDTCYSFWVGATLKLLKIFQYTNFEK---NRNYILSTQDRL 305
Query: 117 SGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERL 167
GG + P PD H FG+ L++++ + V P + ERL
Sbjct: 306 VGGFAKWPDSHPDALHAYFGICGLSLMEE--SGICKVHPALNVSTRTSERL 354
>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana
GN=FTB PE=1 SV=3
Length = 482
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 19 EFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAER 72
++ILSC ++GG G PGSE+H G TYC + + + + ++ D L W R
Sbjct: 235 DYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRLNLDSLMNWAVHR 288
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB
PE=2 SV=1
Length = 419
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 9 LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWW 68
LD + +FILSC ++GG PGSE+H G T+C + + + G ++ +D +L W
Sbjct: 162 LDDELIKNVGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLLDW 221
Query: 69 LAER 72
+ R
Sbjct: 222 VVFR 225
>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb
PE=1 SV=1
Length = 437
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 26/184 (14%)
Query: 17 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHS 76
E+I C N++GG G PG E+H G T+C + L I ++ L W+ R
Sbjct: 225 TAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRF 284
Query: 77 SDNLQP--SQL--SWYNFVRA----------HFEGD--------FFSGRFCNRASLVSLD 114
Q ++L Y+F +A H +GD F + L+
Sbjct: 285 EGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQ 344
Query: 115 VESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIE----RLNLN 170
+GG+ D+P D +HT + ++ L++ + D +P V++ N+
Sbjct: 345 CPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDMVMGVPENVLQPTHPVYNIG 404
Query: 171 PQRL 174
P+++
Sbjct: 405 PEKV 408
>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB
PE=1 SV=1
Length = 437
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 22/148 (14%)
Query: 17 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHS 76
E+I C N++GG G PG E+H G T+C + L I ++ L W+ R
Sbjct: 225 TAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRF 284
Query: 77 SDNLQP--SQL--SWYNFVRA----------HFEGD--------FFSGRFCNRASLVSLD 114
Q ++L Y+F +A H +GD F + L+
Sbjct: 285 EGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQ 344
Query: 115 VESGGISDRPLDIPDPFHTLFGVAALTM 142
+GG+ D+P D +HT + ++ L++
Sbjct: 345 CPAGGLLDKPGKSRDFYHTCYCLSGLSI 372
>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2
SV=1
Length = 437
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 22/148 (14%)
Query: 17 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHS 76
E+I C N++GG G PG E+H G T+C + L I ++ L W+ R
Sbjct: 225 TAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRF 284
Query: 77 SDNLQP--SQL--SWYNFVRA----------HFEGD--------FFSGRFCNRASLVSLD 114
Q ++L Y+F +A H +GD F + L+
Sbjct: 285 EGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSRWMFHQQALQEYILMCCQ 344
Query: 115 VESGGISDRPLDIPDPFHTLFGVAALTM 142
+GG+ D+P D +HT + ++ L++
Sbjct: 345 CPTGGLLDKPGKSRDFYHTCYCLSGLSI 372
>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus
GN=Fntb PE=1 SV=1
Length = 437
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 22/148 (14%)
Query: 17 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHS 76
E+I C N++GG G PG E+H G T+C + L I ++ L W+ R
Sbjct: 225 TAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRF 284
Query: 77 SDNLQP--SQL--SWYNFVRA----------HFEGD--------FFSGRFCNRASLVSLD 114
Q ++L Y+F +A H +GD F + L+
Sbjct: 285 EGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQ 344
Query: 115 VESGGISDRPLDIPDPFHTLFGVAALTM 142
+GG+ D+P D +HT + ++ L++
Sbjct: 345 CPAGGLLDKPGKSRDFYHTCYCLSGLSI 372
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1
SV=2
Length = 431
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 18/165 (10%)
Query: 17 AVEFILSCCNFDGGFGSRPG-SESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDH 75
+ ++ +C N++GGFGS P E+H G T+C L+I + +I+ +KL W + R
Sbjct: 234 VLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAILRSMDQINVEKLLEWSSARQLQ 293
Query: 76 S-------SDNLQPSQLSWYNFVRAHFEGDFFSGRFCNRASLVSL------DVESGGISD 122
S+ L S++ A F G+ N+ +L + E G+ D
Sbjct: 294 EERGFCGRSNKLVDGCYSFWVGGSAAILEAFGYGQCFNKHALRDYILYCCQEKEQPGLRD 353
Query: 123 RPLDIPDPFHT---LFGVAALTMLDPPTPDVLPVDPTYCMPRYVI 164
+P D +HT L G+A TP+ P + C P +I
Sbjct: 354 KPGAHSDFYHTNYCLLGLAVAESSYSCTPNDSPHN-IKCTPDRLI 397
>sp|P32434|PGTB1_SCHPO Geranylgeranyl transferase type-1 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cwg2 PE=3 SV=1
Length = 355
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 25/156 (16%)
Query: 17 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVG------------FLSITGHLHEI---- 60
++++I SC ++GGF P E+HAG T+C + L+ + + +
Sbjct: 172 SIQYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSLILKMIPNSSLNTSNQSYNLMDCV 231
Query: 61 -DADKLAWWLAER-----GDHSSDNLQPSQLSWYNFVRAHFEGD---FFSGRFCNRASLV 111
++L WLA R G + N Y + + D F G + L+
Sbjct: 232 PKVERLIRWLASRQLSSGGLNGRTNKDVDTCYAYWVLSSLKLLDALPFIDGGELEKYLLL 291
Query: 112 SLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPT 147
GG S P + PD H+ G+ A+ D +
Sbjct: 292 HAQHALGGFSKTPGEFPDVLHSALGLYAMAYQDDKS 327
>sp|Q60HE5|MTHR_MACFA Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR
PE=2 SV=1
Length = 656
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 36 GSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSSDNLQPSQ------LSWYN 89
G E+ +T CC ITGHLH+ L +A RGD D + + +
Sbjct: 121 GLETILHMTCCCQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQWEEEEGGFNYAVDLVK 180
Query: 90 FVRAHFEGDFF 100
+R+ F GD+F
Sbjct: 181 HIRSEF-GDYF 190
>sp|A3DDI9|MIAB_CLOTH (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Clostridium thermocellum (strain ATCC 27405 / DSM
1237) GN=miaB PE=3 SV=1
Length = 480
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 56 HLHEIDADKLAWWLAERGDHSSDNLQPSQLSWYN 89
++E D++KLA LAE G +DN+ S L YN
Sbjct: 53 QMNEHDSEKLAGMLAEMGYAETDNVNESDLVIYN 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,970,807
Number of Sequences: 539616
Number of extensions: 3210243
Number of successful extensions: 5048
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4934
Number of HSP's gapped (non-prelim): 69
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)