Query psy18133
Match_columns 177
No_of_seqs 154 out of 1105
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 23:29:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0366|consensus 100.0 6.1E-48 1.3E-52 313.2 11.8 166 2-172 152-328 (329)
2 COG5029 CAL1 Prenyltransferase 100.0 2.3E-46 5E-51 310.3 12.4 166 2-172 164-341 (342)
3 PLN03201 RAB geranylgeranyl tr 100.0 1.8E-45 3.9E-50 312.1 14.6 163 2-169 142-315 (316)
4 PLN02710 farnesyltranstransfer 100.0 8.9E-43 1.9E-47 304.7 14.9 172 2-173 181-437 (439)
5 KOG0367|consensus 100.0 1.5E-42 3.1E-47 285.7 12.4 162 2-168 164-342 (347)
6 cd02895 GGTase-I Geranylgerany 100.0 5.1E-39 1.1E-43 271.7 13.1 139 2-143 153-307 (307)
7 KOG0365|consensus 100.0 2.9E-39 6.3E-44 270.7 8.0 169 2-171 209-415 (423)
8 cd02894 GGTase-II Geranylgeran 100.0 5E-37 1.1E-41 257.1 13.6 139 2-143 138-287 (287)
9 cd02893 FTase Protein farnesyl 100.0 2.4E-36 5.2E-41 254.6 12.6 141 2-142 136-298 (299)
10 PLN02710 farnesyltranstransfer 100.0 9.3E-36 2E-40 260.6 13.9 140 2-145 81-235 (439)
11 PLN03201 RAB geranylgeranyl tr 100.0 3.6E-35 7.8E-40 249.1 13.2 140 2-145 46-196 (316)
12 KOG0366|consensus 100.0 1.4E-35 3.1E-40 241.1 10.0 141 1-145 55-206 (329)
13 cd02894 GGTase-II Geranylgeran 100.0 6E-35 1.3E-39 244.5 13.0 140 2-145 88-240 (287)
14 cd02895 GGTase-I Geranylgerany 100.0 3.1E-34 6.8E-39 242.5 13.1 143 2-145 101-260 (307)
15 cd02893 FTase Protein farnesyl 100.0 4.6E-34 1E-38 240.7 12.8 141 2-145 85-239 (299)
16 cd02890 PTase Protein prenyltr 100.0 4.6E-33 1E-37 232.0 13.0 139 2-143 136-286 (286)
17 cd02890 PTase Protein prenyltr 100.0 1.8E-31 3.9E-36 222.4 13.2 141 2-145 86-239 (286)
18 KOG0365|consensus 100.0 8.7E-32 1.9E-36 225.8 8.6 142 2-145 109-263 (423)
19 COG5029 CAL1 Prenyltransferase 100.0 1.3E-29 2.8E-34 210.6 10.1 147 1-155 63-224 (342)
20 KOG0367|consensus 99.9 5E-27 1.1E-31 193.9 10.6 140 2-145 48-218 (347)
21 PF13249 Prenyltrans_2: Prenyl 99.7 1.7E-17 3.8E-22 119.4 8.9 100 18-121 1-112 (113)
22 cd00688 ISOPREN_C2_like This g 99.6 8.6E-15 1.9E-19 118.7 11.2 129 11-142 159-299 (300)
23 PF00432 Prenyltrans: Prenyltr 99.6 4.2E-15 9.1E-20 91.2 5.2 44 12-55 1-44 (44)
24 cd00688 ISOPREN_C2_like This g 99.6 3.5E-14 7.6E-19 115.2 11.6 133 10-145 50-202 (300)
25 COG1689 Uncharacterized protei 99.5 8.5E-14 1.8E-18 111.5 8.7 63 10-73 4-66 (274)
26 TIGR03463 osq_cycl 2,3-oxidosq 99.5 5.2E-13 1.1E-17 122.9 12.6 133 12-145 400-579 (634)
27 cd02892 SQCY_1 Squalene cyclas 99.3 1.7E-11 3.7E-16 112.9 12.4 133 12-145 400-579 (634)
28 PF00432 Prenyltrans: Prenyltr 99.2 7.7E-12 1.7E-16 76.6 3.7 34 110-144 11-44 (44)
29 PF13249 Prenyltrans_2: Prenyl 99.2 5.8E-12 1.3E-16 90.4 3.4 68 12-79 40-112 (113)
30 cd02889 SQCY Squalene cyclase 99.2 1.3E-10 2.9E-15 98.7 11.9 133 12-145 117-293 (348)
31 PLN02993 lupeol synthase 99.2 3.4E-10 7.3E-15 105.6 11.9 133 12-145 513-695 (763)
32 TIGR01507 hopene_cyclase squal 99.1 5.7E-10 1.2E-14 102.9 12.4 133 12-145 403-573 (635)
33 TIGR01787 squalene_cyclas squa 99.1 7.1E-10 1.5E-14 102.1 11.1 133 12-145 388-563 (621)
34 PLN03012 Camelliol C synthase 99.1 1E-09 2.3E-14 102.3 12.2 133 12-145 513-695 (759)
35 cd02889 SQCY Squalene cyclase 98.8 5.9E-08 1.3E-12 82.4 11.0 127 15-145 2-180 (348)
36 TIGR03463 osq_cycl 2,3-oxidosq 98.7 9E-08 2E-12 88.5 9.7 108 14-124 479-606 (634)
37 cd02892 SQCY_1 Squalene cyclas 98.6 1.7E-07 3.6E-12 86.6 9.4 107 13-124 477-606 (634)
38 PF13243 Prenyltrans_1: Prenyl 98.5 5.8E-08 1.3E-12 69.4 3.4 80 15-96 2-86 (109)
39 TIGR01507 hopene_cyclase squal 98.5 7.1E-07 1.5E-11 82.6 11.2 108 13-123 472-599 (635)
40 TIGR01787 squalene_cyclas squa 98.5 5.3E-07 1.1E-11 83.2 9.4 109 13-124 461-590 (621)
41 COG1689 Uncharacterized protei 98.4 7.3E-07 1.6E-11 71.9 5.9 82 13-97 183-272 (274)
42 cd02897 A2M_2 Proteins similar 98.4 8.4E-06 1.8E-10 68.2 12.3 126 9-145 39-194 (292)
43 PLN03012 Camelliol C synthase 98.3 2.9E-06 6.3E-11 79.6 9.7 108 13-122 591-722 (759)
44 PLN02993 lupeol synthase 98.3 3.9E-06 8.4E-11 78.8 10.0 108 13-122 591-722 (763)
45 cd02891 A2M_like Proteins simi 98.3 5.3E-06 1.1E-10 68.4 9.5 86 13-98 50-154 (282)
46 cd02896 complement_C3_C4_C5 Pr 98.0 1.7E-05 3.7E-10 66.8 7.3 67 14-80 54-124 (297)
47 PF13243 Prenyltrans_1: Prenyl 97.9 1.1E-05 2.5E-10 57.4 2.8 80 63-145 2-88 (109)
48 PF07678 A2M_comp: A-macroglob 97.7 7.9E-05 1.7E-09 61.2 5.9 63 19-81 4-71 (246)
49 cd02897 A2M_2 Proteins similar 97.1 0.0076 1.7E-07 50.4 10.8 128 11-144 101-252 (292)
50 KOG0497|consensus 96.9 0.0044 9.6E-08 57.5 8.1 134 11-146 508-695 (760)
51 KOG0497|consensus 96.8 0.0039 8.4E-08 57.9 7.4 68 12-79 638-720 (760)
52 cd02896 complement_C3_C4_C5 Pr 96.5 0.0063 1.4E-07 51.3 5.9 66 13-80 206-283 (297)
53 cd02891 A2M_like Proteins simi 93.6 0.22 4.7E-06 40.8 6.2 81 13-98 102-192 (282)
54 COG1657 SqhC Squalene cyclase 93.1 0.075 1.6E-06 48.3 2.9 122 12-134 281-434 (517)
55 TIGR02474 pec_lyase pectate ly 88.9 0.4 8.6E-06 40.7 3.0 64 14-77 69-154 (290)
56 PF07678 A2M_comp: A-macroglob 83.0 2.3 4.9E-05 34.8 4.6 70 10-81 147-231 (246)
57 PF01122 Cobalamin_bind: Eukar 80.7 2.7 5.9E-05 36.2 4.4 91 14-121 217-311 (326)
58 PLN02592 ent-copalyl diphospha 77.7 5.6 0.00012 38.4 5.9 55 15-70 118-174 (800)
59 PLN02592 ent-copalyl diphospha 77.5 17 0.00036 35.2 9.0 117 6-146 247-376 (800)
60 PLN02279 ent-kaur-16-ene synth 75.8 6.9 0.00015 37.7 6.0 41 15-55 76-120 (784)
61 KOG1366|consensus 73.0 8.4 0.00018 39.5 6.0 73 7-79 959-1044(1436)
62 COG1657 SqhC Squalene cyclase 65.6 5.6 0.00012 36.4 2.8 64 14-77 403-476 (517)
63 PLN02279 ent-kaur-16-ene synth 46.8 93 0.002 30.2 7.7 102 21-146 218-331 (784)
64 PF05817 Ribophorin_II: Oligos 32.2 4E+02 0.0087 25.2 9.3 109 8-145 27-139 (636)
65 PF09492 Pec_lyase: Pectic aci 25.0 57 0.0012 27.7 2.2 59 14-74 64-146 (289)
66 PF07944 DUF1680: Putative gly 22.5 2E+02 0.0043 26.2 5.4 46 37-82 58-106 (520)
67 TIGR02474 pec_lyase pectate ly 22.4 2.6E+02 0.0056 23.8 5.7 62 14-75 139-221 (290)
68 COG2373 Large extracellular al 20.8 1.2E+02 0.0027 31.8 4.0 43 13-55 1200-1243(1621)
69 TIGR01577 oligosac_amyl oligos 20.0 6.4E+02 0.014 23.4 8.3 42 39-80 531-584 (616)
No 1
>KOG0366|consensus
Probab=100.00 E-value=6.1e-48 Score=313.16 Aligned_cols=166 Identities=50% Similarity=0.950 Sum_probs=161.8
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-Ccc
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DNL 80 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~g 80 (177)
.|++|+.++.+++++.|+|+.+|.|.|||||..||.|||.+..||++++|+++++++.+|++.+..||..||.+.| .+|
T Consensus 152 ~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNG 231 (329)
T KOG0366|consen 152 CLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNG 231 (329)
T ss_pred HHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCCCCCCC
Q psy18133 81 QPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDV 150 (177)
Q Consensus 81 r~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~~~~~l 150 (177)
||+| |+||++++|+|+|+. +|||+++ ++||+.+.|||++||+.+.|.+||++++|+|+||+. +++
T Consensus 232 RpeKlpDVCYSwWvlsSL~iigrl---~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~--~~l 306 (329)
T KOG0366|consen 232 RPEKLPDVCYSWWVLSSLAIIGRL---HWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGY--PGL 306 (329)
T ss_pred CcccCcchhhHHHHHhHHHHhhhh---hhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCC--CCc
Confidence 9998 999999999999999 9999998 789999999999999999999999999999999999 899
Q ss_pred CcCCccccCCHHHHHHhhcCCC
Q psy18133 151 LPVDPTYCMPRYVIERLNLNPQ 172 (177)
Q Consensus 151 ~~~~p~~~i~~~~~~~~~~~~~ 172 (177)
++|||.||+|+++++|+++++.
T Consensus 307 ~~idP~fcmp~~v~~r~~~~~~ 328 (329)
T KOG0366|consen 307 KPIDPIFCMPKEVLQRIKVTPY 328 (329)
T ss_pred eecCCcccCcHHHHhhhccccC
Confidence 9999999999999999998875
No 2
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-46 Score=310.29 Aligned_cols=166 Identities=35% Similarity=0.645 Sum_probs=158.5
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccC-HHHHHHHHHHcCCCCC-Cc
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID-ADKLAWWLAERGDHSS-DN 79 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id-~~~l~~~l~~~Q~~~G-F~ 79 (177)
+++||++++..+.+..++||++|||+|||||..|+.|||+++||||+++|++|++++.++ +|++++||.+||.+.| |+
T Consensus 164 ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~ 243 (342)
T COG5029 164 ILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLN 243 (342)
T ss_pred HHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcC
Confidence 467889999999999999999999999999999999999999999999999999999998 7999999999999999 99
Q ss_pred cCCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCCCCCC
Q psy18133 80 LQPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPD 149 (177)
Q Consensus 80 gr~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~~~~~ 149 (177)
||+|| |+||+++++++|++. .|+|.+. +.||+...|||+++|++++|.+||.+++++|++++. ..
T Consensus 244 GR~nKl~D~CYs~WvlsSl~il~~~---~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~~~--k~ 318 (342)
T COG5029 244 GRSNKLVDTCYSFWVLSSLAILGKL---DFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEY--KY 318 (342)
T ss_pred CCcccCccchhhhhhcchHHhcchh---hhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHhcc--CC
Confidence 99998 999999999999988 8999987 678888789999999999999999999999999999 88
Q ss_pred CCcCCccccCCHHHHHHhhcCCC
Q psy18133 150 VLPVDPTYCMPRYVIERLNLNPQ 172 (177)
Q Consensus 150 l~~~~p~~~i~~~~~~~~~~~~~ 172 (177)
|.+|||.||||.+.+++++.++.
T Consensus 319 l~~v~p~~clP~e~~~k~k~y~~ 341 (342)
T COG5029 319 LNPVDPIYCLPQEVTNKFKKYFC 341 (342)
T ss_pred CCCCCCcccCCHHHHHHHHHhhc
Confidence 99999999999999999998764
No 3
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=1.8e-45 Score=312.11 Aligned_cols=163 Identities=47% Similarity=0.876 Sum_probs=155.2
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-Ccc
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DNL 80 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~g 80 (177)
+++||+.++.+|++++++||.+||++||||+..|+.|||+++||||+++|++++.++.+|++++++||.+||+.+| |+|
T Consensus 142 ~l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~g 221 (316)
T PLN03201 142 CLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNG 221 (316)
T ss_pred HHHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCC
Confidence 4678898888999999999999999999999999999999999999999999999999999999999999999888 999
Q ss_pred CCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCCCCCCC
Q psy18133 81 QPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDV 150 (177)
Q Consensus 81 r~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~~~~~l 150 (177)
|||| ||||++++|++|+.. +++|.++ ++||+...|||+++|++.||++||||++++|++++. +.|
T Consensus 222 rp~k~~D~cys~w~~a~L~ll~~~---~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~--~~l 296 (316)
T PLN03201 222 RPEKLPDVCYSWWVLSSLIIIDRV---HWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGY--PGL 296 (316)
T ss_pred CCCCCCchHHHHHHHHHHHHhccc---cccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCC--CCC
Confidence 9998 999999999999987 7899887 689987679999999999999999999999999998 789
Q ss_pred CcCCccccCCHHHHHHhhc
Q psy18133 151 LPVDPTYCMPRYVIERLNL 169 (177)
Q Consensus 151 ~~~~p~~~i~~~~~~~~~~ 169 (177)
++|||.||||+++++++++
T Consensus 297 ~~~~p~~~~~~~~~~~~~~ 315 (316)
T PLN03201 297 KPIDPAYALPVDVVNRIGL 315 (316)
T ss_pred CCCCCcccCCHHHHHHhcc
Confidence 9999999999999999885
No 4
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=8.9e-43 Score=304.73 Aligned_cols=172 Identities=21% Similarity=0.367 Sum_probs=151.2
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-Ccc
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DNL 80 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~g 80 (177)
+++||+.++.++.+++++||.+||++||||++.|+.|+|+++|||||++|.+|++++.+|.+++++||.+||..+| |+|
T Consensus 181 il~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~G 260 (439)
T PLN02710 181 VASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQG 260 (439)
T ss_pred HHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999888 999
Q ss_pred CCCc-----chHHHHHHHhhhCCccc------------------------------------------------------
Q psy18133 81 QPSQ-----LSWYNFVRAHFEGDFFS------------------------------------------------------ 101 (177)
Q Consensus 81 r~~k-----~ty~a~a~l~lL~~~~~------------------------------------------------------ 101 (177)
|||| |+||++++|+||++...
T Consensus 261 R~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (439)
T PLN02710 261 RTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQ 340 (439)
T ss_pred CCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9998 99999999999986410
Q ss_pred --CCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC------------------CCCCCCcCCcc
Q psy18133 102 --GRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP------------------PTPDVLPVDPT 156 (177)
Q Consensus 102 --~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~------------------~~~~l~~~~p~ 156 (177)
..++|.++ +.||+.+.|||+++||+.+|.|||||+|++|++++. +.+.|+++||+
T Consensus 341 ~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~~~~~~~~~~~~~~~~~g~~~n~l~~~~p~ 420 (439)
T PLN02710 341 QMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYSASKDEDSPPLPRHVLGPYSNLLEPIHPL 420 (439)
T ss_pred ccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHHhhcccccCCCCCccccccCCCccccCCCCCc
Confidence 01245544 455544459999999999999999999999999864 13468999999
Q ss_pred ccCCHHHHHHhhcCCCC
Q psy18133 157 YCMPRYVIERLNLNPQR 173 (177)
Q Consensus 157 ~~i~~~~~~~~~~~~~~ 173 (177)
||||.+.+.+.+.++..
T Consensus 421 ~ni~~~~~~~~~~~f~~ 437 (439)
T PLN02710 421 YNVVLDKYHEAIEFFSS 437 (439)
T ss_pred cCCCHHHHHHHHHHHhh
Confidence 99999999998877653
No 5
>KOG0367|consensus
Probab=100.00 E-value=1.5e-42 Score=285.67 Aligned_cols=162 Identities=28% Similarity=0.478 Sum_probs=153.1
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCC--Cc----cCHHHHHHHHHHcCCC
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHL--HE----IDADKLAWWLAERGDH 75 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l--~~----id~~~l~~~l~~~Q~~ 75 (177)
+++||+.++.+|.++++.||++||++||||+..||.|||+++|||||++|++++++ +. -+++++++|+..||..
T Consensus 164 I~ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~ 243 (347)
T KOG0367|consen 164 ICYMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVS 243 (347)
T ss_pred HHHHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999999999999999999999999999987 33 3579999999999999
Q ss_pred CC-CccCCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcC
Q psy18133 76 SS-DNLQPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLD 144 (177)
Q Consensus 76 ~G-F~gr~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~ 144 (177)
+| |+||+|| |+||++++|++|+.. .++|.+. ++||+.-.|||++.|+..||.+|||++++||++++
T Consensus 244 sgGfqGR~NKp~DTCYaFWigasLklL~~~---~~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~e 320 (347)
T KOG0367|consen 244 SGGFQGRTNKPVDTCYAFWIGASLKLLDAD---WLIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLE 320 (347)
T ss_pred cCCcCCCCCCCchhHHHHHHHHHHHHccch---HhhhHHHHHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhc
Confidence 99 9999998 999999999999998 7788776 78999989999999999999999999999999999
Q ss_pred CCCCCCCcCCccccCCHHHHHHhh
Q psy18133 145 PPTPDVLPVDPTYCMPRYVIERLN 168 (177)
Q Consensus 145 ~~~~~l~~~~p~~~i~~~~~~~~~ 168 (177)
+ .++.+++|.++|+.++.+++.
T Consensus 321 e--~~~~~v~p~l~~s~~~~~r~~ 342 (347)
T KOG0367|consen 321 E--KGLSPVCPSLNMSMRASERCC 342 (347)
T ss_pred C--CCCCCCCccccccHHHHHHHH
Confidence 9 899999999999999999985
No 6
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=5.1e-39 Score=271.71 Aligned_cols=139 Identities=30% Similarity=0.567 Sum_probs=129.2
Q ss_pred cccccCCCC--hhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCC---ccCHHHHHHHHHHcCCCC
Q psy18133 2 VQHPIGKLD--AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLH---EIDADKLAWWLAERGDHS 76 (177)
Q Consensus 2 ~l~lL~~l~--~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~---~id~~~l~~~l~~~Q~~~ 76 (177)
+++||+.++ .+|++++++||.+||++||||+..|+.|+|+++||||+++|.+|+.++ .+|++++++||.+||+.+
T Consensus 153 ~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~ 232 (307)
T cd02895 153 ICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSG 232 (307)
T ss_pred HHHHhCCCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCC
Confidence 567888776 689999999999999999999999999999999999999999999876 689999999999999999
Q ss_pred C-CccCCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhc
Q psy18133 77 S-DNLQPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTML 143 (177)
Q Consensus 77 G-F~gr~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll 143 (177)
| |+|||+| |+||++++|+||+.. +++|.++ ++||+...|||+++|+++||++||||++++|+|+
T Consensus 233 GGF~gr~~k~~D~cysfw~~a~L~iL~~~---~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 233 TGFNGRPNKPADTCYSFWVGASLKLLDAF---QLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred CCcCCCCCCCCccchhhHHHHHHHHcCcc---cccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 8 9999997 999999999999987 7899887 5688665599999999999999999999999985
No 7
>KOG0365|consensus
Probab=100.00 E-value=2.9e-39 Score=270.68 Aligned_cols=169 Identities=24% Similarity=0.481 Sum_probs=150.1
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCC-CC-Cc
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDH-SS-DN 79 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~-~G-F~ 79 (177)
+.+|||..++...+.+.+||.+||+++||||+.|+.|+|+++||||+|+|++|++.+.+|.+++.+|...||.. +| |+
T Consensus 209 vasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFq 288 (423)
T KOG0365|consen 209 VASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQ 288 (423)
T ss_pred HHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhcccc
Confidence 35688888888899999999999999999999999999999999999999999999999999999999999994 56 99
Q ss_pred cCCCc-----chHHHHHHHhhhCCccc--CC-----ccchhh------hcccCCCCCCccCCCCCCCCHHHHHHHHHHHH
Q psy18133 80 LQPSQ-----LSWYNFVRAHFEGDFFS--GR-----FCNRAS------LVSLDVESGGISDRPLDIPDPFHTLFGVAALT 141 (177)
Q Consensus 80 gr~~k-----~ty~a~a~l~lL~~~~~--~~-----~~d~~~------l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ 141 (177)
||+|| |+||+.+++.+|..... .+ .+|.++ +.||... |||.++|++.+|.|||+|+|.+|+
T Consensus 289 GRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~-GGlrDKP~K~~DfYHTCYcLsGLS 367 (423)
T KOG0365|consen 289 GRTNKLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPS-GGLRDKPGKPRDFYHTCYCLSGLS 367 (423)
T ss_pred ccccchhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCC-CCccCCCCCCcchhhhhhHhcchh
Confidence 99999 99999999999976532 12 456665 5799876 999999999999999999999999
Q ss_pred hcCC------------------CCCCCCcCCccccCCHHHHHHhhcCC
Q psy18133 142 MLDP------------------PTPDVLPVDPTYCMPRYVIERLNLNP 171 (177)
Q Consensus 142 ll~~------------------~~~~l~~~~p~~~i~~~~~~~~~~~~ 171 (177)
+... .++.|.++||+||||.+.+++.+.++
T Consensus 368 iAq~y~~~~~d~~~~~~~ilg~~~n~L~p~~pvyni~~~~~~~a~~yF 415 (423)
T KOG0365|consen 368 IAQHYSCAPSDSPHNPDRILGSSKNSLLPVHPVYNIPIDSVRKAIEYF 415 (423)
T ss_pred HHhhhccCCCCCCCCCcccccCchhhcCccCccccCCHHHHHHHHHHH
Confidence 6532 34679999999999999999998664
No 8
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=5e-37 Score=257.08 Aligned_cols=139 Identities=48% Similarity=0.919 Sum_probs=130.7
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-Ccc
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DNL 80 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~g 80 (177)
++.||+.++.++++++++||.+||++||||++.|+.|+|+++|||||++|.+++.++.+|++++++||.+||+++| |+|
T Consensus 138 ~l~ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~g 217 (287)
T cd02894 138 CLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNG 217 (287)
T ss_pred HHHHhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCC
Confidence 4678888888999999999999999999999999999999999999999999999989999999999999999999 999
Q ss_pred CCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhc
Q psy18133 81 QPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTML 143 (177)
Q Consensus 81 r~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll 143 (177)
||+| ||||++++|++|+.. +++|.++ ++||+.+.|||+++|++++|++||||++++|+|+
T Consensus 218 r~~k~~D~~ysf~~~a~l~~l~~~---~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl~ 287 (287)
T cd02894 218 RPEKLPDVCYSWWVLSSLKIIGRL---HWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287 (287)
T ss_pred CCCCCCchhHhhHHHHHHHHhccc---cccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 9998 999999999999987 7888776 6799655599999999999999999999999986
No 9
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=2.4e-36 Score=254.57 Aligned_cols=141 Identities=27% Similarity=0.538 Sum_probs=128.0
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCC-CC-Cc
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDH-SS-DN 79 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~-~G-F~ 79 (177)
+++||+.+++++.+++++||.+||++||||++.|+.|+|+++|||||++|.+|+..+.+|++++++||.+||++ +| |+
T Consensus 136 ~~~lL~~~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~ 215 (299)
T cd02893 136 VASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQ 215 (299)
T ss_pred HHHHhCCCchhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcC
Confidence 46788888889999999999999999999999999999999999999999999999899999999999999998 77 99
Q ss_pred cCCCc-----chHHHHHHHhhhCCccc----------CCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHH
Q psy18133 80 LQPSQ-----LSWYNFVRAHFEGDFFS----------GRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAA 139 (177)
Q Consensus 80 gr~~k-----~ty~a~a~l~lL~~~~~----------~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alas 139 (177)
||||| |+||++++|++|+.... ..++|.++ ++||+.+.|||+++|++.||++|||+++++
T Consensus 216 grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~yHT~~~l~~ 295 (299)
T cd02893 216 GRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRDFYHTCYALSG 295 (299)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCchhHHHHHHH
Confidence 99998 99999999999987531 14577776 557665559999999999999999999999
Q ss_pred HHh
Q psy18133 140 LTM 142 (177)
Q Consensus 140 L~l 142 (177)
|++
T Consensus 296 Lsl 298 (299)
T cd02893 296 LSI 298 (299)
T ss_pred Hhc
Confidence 997
No 10
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=9.3e-36 Score=260.59 Aligned_cols=140 Identities=24% Similarity=0.331 Sum_probs=128.3
Q ss_pred cccccCC-CChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCC---CCccCHHHHHHHHHHcCCCCC
Q psy18133 2 VQHPIGK-LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGH---LHEIDADKLAWWLAERGDHSS 77 (177)
Q Consensus 2 ~l~lL~~-l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~---l~~id~~~l~~~l~~~Q~~~G 77 (177)
+|+||+. ++.++++++++||.+||++||||++.|++++|+++|||||++|.+||+ ++.||++++++||.++|+++|
T Consensus 81 sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dG 160 (439)
T PLN02710 81 SIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSG 160 (439)
T ss_pred HHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCC
Confidence 4778887 788999999999999999999999999999999999999999999996 567899999999999999999
Q ss_pred -CccCCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 78 -DNLQPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 78 -F~gr~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
|.++++. ++|||+++++||+.. +..+.++ ++||++| |||+++|++|+|++|||||+|+|+||++
T Consensus 161 gF~~~~~gE~D~R~tYcAlail~LL~~l---~~~~~e~~~~~I~scQ~~d-GGF~g~P~~EaH~gyTfcavAsL~LLg~ 235 (439)
T PLN02710 161 GFRMHDGGEMDVRACYTAISVASLLNIL---DDELVKGVGDYILSCQTYE-GGIGGEPGAEAHGGYTFCGLAAMILINE 235 (439)
T ss_pred CcccCCCCCCCcCCcHHHHHHHHHhCcC---chhhHHHHHHHHHHhCCCC-CCCCCCCCCCCchHHHHHHHHHHHHcCC
Confidence 9988763 999999999999986 3344444 6899999 9999999999999999999999999987
No 11
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=3.6e-35 Score=249.14 Aligned_cols=140 Identities=21% Similarity=0.325 Sum_probs=131.2
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-Ccc
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DNL 80 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~g 80 (177)
+|++|+.++.++++++++||++||++||||++.|++++|+.+||||+++|.++++++.+|++++++||.++|+++| |.+
T Consensus 46 ~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~ 125 (316)
T PLN03201 46 ALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSG 125 (316)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccC
Confidence 4788998889999999999999999999999999999999999999999999998889999999999999999999 999
Q ss_pred CCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 81 QPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 81 r~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
++++ |+|||++++++|+.. +.+|.++ ++||++| |||+.+|++|+|++|||||+|+|++++.
T Consensus 126 ~~~ge~D~r~ty~a~a~l~LL~~~---~~i~~~~~~~~i~scq~~d-GGF~~~p~~esh~g~T~caiaaL~llg~ 196 (316)
T PLN03201 126 DEWGEIDTRFSYCALCCLSLLKRL---DKINVEKAVDYIVSCKNFD-GGFGCTPGGESHAGQIFCCVGALAITGS 196 (316)
T ss_pred CCCCCccHHHHHHHHHHHHHhCcc---chhHHHHHHHHHHHhcCCC-CCcCCCCCCCCccceehHHHHHHHHcCc
Confidence 8875 999999999999976 4566665 6899999 9999999999999999999999999987
No 12
>KOG0366|consensus
Probab=100.00 E-value=1.4e-35 Score=241.08 Aligned_cols=141 Identities=23% Similarity=0.350 Sum_probs=134.8
Q ss_pred CcccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-Cc
Q psy18133 1 MVQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DN 79 (177)
Q Consensus 1 ~~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~ 79 (177)
|+|+||++++.+++|+++.||++||+.+|||++.||+.+|+-+|++||++|++.+.++.+|++++++|++.+|++|| |+
T Consensus 55 tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~ 134 (329)
T KOG0366|consen 55 TALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFS 134 (329)
T ss_pred hHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cCCC-----cchHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 80 LQPS-----QLSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 80 gr~~-----k~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
|.-+ |++|||+++|++|+++ +.+|.++ ++|.|.| |||+-+||.|||+...|||+++|+++++
T Consensus 135 gD~wGEvDTRfs~~av~~L~lLg~l---d~~nve~aVd~~~~CyN~D-GGFG~~pGaESHagqifcCvgaLai~~~ 206 (329)
T KOG0366|consen 135 GDIWGEVDTRFSYCAVACLALLGKL---DTINVEKAVDFVLSCYNFD-GGFGCRPGAESHAGQIFCCVGALAITGK 206 (329)
T ss_pred CCcccccchhhhHHHHHHHHHHhhH---HHhhHHHHHHHHHhhcccC-CCcCCCCCcccccceehhhHHHHHHccc
Confidence 8764 4999999999999999 6788776 7999999 9999999999999999999999999987
No 13
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=6e-35 Score=244.48 Aligned_cols=140 Identities=22% Similarity=0.321 Sum_probs=129.7
Q ss_pred cccccCCCChhc--HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-C
Q psy18133 2 VQHPIGKLDAIN--LSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-D 78 (177)
Q Consensus 2 ~l~lL~~l~~~~--~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F 78 (177)
+|.+|+.++.+| ++++++||.+||++||||++.|+.|+|+++||||+++|.+++..+.+|++++++||.++|++|| |
T Consensus 88 ~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~q~~dGGF 167 (287)
T cd02894 88 ILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGF 167 (287)
T ss_pred HHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCCCCc
Confidence 355666677788 9999999999999999999999999999999999999999998888999999999999999999 9
Q ss_pred ccCCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 79 NLQPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 79 ~gr~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
++++++ |||||+++|++||.. +.+|.++ ++||+.+ |||+++|++++|++||||++++|++++.
T Consensus 168 ~~~~~~es~~~~t~cavasL~llg~~---~~~~~~~~~~~L~~~q~~~-GGf~gr~~k~~D~~ysf~~~a~l~~l~~ 240 (287)
T cd02894 168 GCRPGAESHAGQIFCCVGALAILGSL---DLIDRDRLGWWLCERQLPS-GGLNGRPEKLPDVCYSWWVLSSLKIIGR 240 (287)
T ss_pred CCCCCCCCchhHHHHHHHHHHHcCcc---cccCHHHHHHHHHHhCCCC-CCcCCCCCCCCchhHhhHHHHHHHHhcc
Confidence 999986 999999999999987 5667665 6799988 9999999999999999999999999987
No 14
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=3.1e-34 Score=242.52 Aligned_cols=143 Identities=19% Similarity=0.245 Sum_probs=128.2
Q ss_pred cccccCC-CChhcHHHHHHHHHhccCCCCCccCCC---CCCCChHHHHHHHHHHHHhCCCC--ccCHHHHHHHHHHcCCC
Q psy18133 2 VQHPIGK-LDAINLSKAVEFILSCCNFDGGFGSRP---GSESHAGLTYCCVGFLSITGHLH--EIDADKLAWWLAERGDH 75 (177)
Q Consensus 2 ~l~lL~~-l~~~~~~~~~~~I~scq~~dGGF~~~p---g~esh~~~Ty~Al~~L~llg~l~--~id~~~l~~~l~~~Q~~ 75 (177)
+|.+|+. ++.+|++++++||.+||++||||++.+ ++|+|++.|||||++|.+|+..+ .+|++++++||.+||+.
T Consensus 101 ~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~ 180 (307)
T cd02895 101 SLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSY 180 (307)
T ss_pred HHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCC
Confidence 4667754 567899999999999999999999997 89999999999999999999876 68999999999999999
Q ss_pred CC-CccCCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcC
Q psy18133 76 SS-DNLQPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLD 144 (177)
Q Consensus 76 ~G-F~gr~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~ 144 (177)
|| |.++++. |||||+++|++|+.......+|.++ ++||+.+ |||+++|++++|++||||++|+|++|+
T Consensus 181 dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~-GGF~gr~~k~~D~cysfw~~a~L~iL~ 259 (307)
T cd02895 181 DGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSG-TGFNGRPNKPADTCYSFWVGASLKLLD 259 (307)
T ss_pred CCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCC-CCcCCCCCCCCccchhhHHHHHHHHcC
Confidence 99 9998874 9999999999999873112566665 6899988 999999999999999999999999998
Q ss_pred C
Q psy18133 145 P 145 (177)
Q Consensus 145 ~ 145 (177)
+
T Consensus 260 ~ 260 (307)
T cd02895 260 A 260 (307)
T ss_pred c
Confidence 7
No 15
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=4.6e-34 Score=240.68 Aligned_cols=141 Identities=19% Similarity=0.225 Sum_probs=130.1
Q ss_pred cccccCC---CChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-
Q psy18133 2 VQHPIGK---LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS- 77 (177)
Q Consensus 2 ~l~lL~~---l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G- 77 (177)
+|.+|+. ++.+|++++++||.+||++||||+..|+.|+|++.||||++++.+|+.++.++++++++||.+||+.+|
T Consensus 85 ~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~~dGG 164 (299)
T cd02893 85 ALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGG 164 (299)
T ss_pred HHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCCCCC
Confidence 4567765 677999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred CccCCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 78 DNLQPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 78 F~gr~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
|+++|++ ||||++++|++|+.. +.+|.++ ++||+...|||++||++++|++||||++++|+++++
T Consensus 165 F~~~p~~e~h~~yTfcavasL~llg~~---~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~ 239 (299)
T cd02893 165 FGGVPGNEAHGGYTFCALAALAILGKP---DKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEA 239 (299)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHcCCc---cccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 9999986 999999999999987 6678776 579988459999999999999999999999999986
No 16
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=4.6e-33 Score=232.03 Aligned_cols=139 Identities=37% Similarity=0.690 Sum_probs=126.0
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC--Cc
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS--DN 79 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G--F~ 79 (177)
+|.+|+....++++++++||.+||++||||+..|+.|+|+++||||+++|.+++..+.+|++++++||.+||+.+| |+
T Consensus 136 ~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~ 215 (286)
T cd02890 136 ILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFN 215 (286)
T ss_pred HHHHhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcC
Confidence 4677887777899999999999999999999999999999999999999999999889999999999999999874 99
Q ss_pred cCCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhc
Q psy18133 80 LQPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTML 143 (177)
Q Consensus 80 gr~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll 143 (177)
||++| |+||++++|++|+.. .++|.++ ++||+...|||+++|++.+|++|||+++++|+++
T Consensus 216 g~~~~~~d~~yt~~~~~~l~~l~~~---~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~lsl~ 286 (286)
T cd02890 216 GRPNKLVDTCYSFWVGASLKILGRL---HLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLSLL 286 (286)
T ss_pred CCCCCCCccchhhHHHHHHHHcccc---cccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHHcC
Confidence 99997 999999999999987 6777776 4344444599999999999999999999999975
No 17
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.97 E-value=1.8e-31 Score=222.44 Aligned_cols=141 Identities=22% Similarity=0.351 Sum_probs=129.3
Q ss_pred cccccCC--CChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-C
Q psy18133 2 VQHPIGK--LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-D 78 (177)
Q Consensus 2 ~l~lL~~--l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F 78 (177)
+|.+|+. .+.+|++++++||.+||++||||+..|+.|+|++.|||||++|.+++....++++++++||.++|++|| |
T Consensus 86 ~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGf 165 (286)
T cd02890 86 SLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGF 165 (286)
T ss_pred HHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCCCCCCc
Confidence 4667776 678899999999999999999999999999999999999999999998777899999999999999999 9
Q ss_pred ccCCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 79 NLQPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 79 ~gr~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
.+++++ |||||+++|++|+.. +.+|.++ ++||+.+.|||+++|++++|++||||++++|++++.
T Consensus 166 ~~~~~~es~~~~t~~av~sL~~l~~~---~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~ 239 (286)
T cd02890 166 GGVPGAESHGGYTFCAVASLALLGRL---DLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGR 239 (286)
T ss_pred CCCCCCCCCccHhHHHHHHHHHcCCC---cccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHccc
Confidence 999875 999999999999987 4556665 679998845999999999999999999999999988
No 18
>KOG0365|consensus
Probab=99.97 E-value=8.7e-32 Score=225.76 Aligned_cols=142 Identities=23% Similarity=0.315 Sum_probs=124.0
Q ss_pred cccccC-CCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCC---CCccCHHHHHHHHHHcCCCCC
Q psy18133 2 VQHPIG-KLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGH---LHEIDADKLAWWLAERGDHSS 77 (177)
Q Consensus 2 ~l~lL~-~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~---l~~id~~~l~~~l~~~Q~~~G 77 (177)
+|.+|+ .++..-.+++|+|+.+||.++||||+.||+.+|++.||+||.+|.+++. ++.||++++.+||.+++.+||
T Consensus 109 sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dG 188 (423)
T KOG0365|consen 109 SLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDG 188 (423)
T ss_pred HHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCC
Confidence 356676 4566678899999999999999999999999999999999999999997 457999999999999999999
Q ss_pred -CccCCC-----cchHHHHHHHhhhCCcccCCccchhh---hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 78 -DNLQPS-----QLSWYNFVRAHFEGDFFSGRFCNRAS---LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 78 -F~gr~~-----k~ty~a~a~l~lL~~~~~~~~~d~~~---l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
|....+ |..|||+++.+++|...+ ++..-.. .+||++| |||++.|+.|+|++|||||+|||+||++
T Consensus 189 gFrmh~~GE~DvRs~YcA~svasllni~~d-eL~eG~~~wi~~CQtyE-GG~GG~P~~EAHGGYTFCalAalalLn~ 263 (423)
T KOG0365|consen 189 GFRMHVEGEVDVRSAYCALSVASLLNIPMD-ELFEGTLDWIASCQTYE-GGFGGEPGVEAHGGYTFCALAALALLNE 263 (423)
T ss_pred CeEeecCCcchHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHhccccc-CCcCCCccccccCCeeHHHHHHHHHHhh
Confidence 975553 499999999999998754 2222111 6899999 9999999999999999999999999987
No 19
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-29 Score=210.59 Aligned_cols=147 Identities=21% Similarity=0.299 Sum_probs=128.2
Q ss_pred CcccccCCCC-hhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCC---CccCHHHHHHHHHHcCCCC
Q psy18133 1 MVQHPIGKLD-AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHL---HEIDADKLAWWLAERGDHS 76 (177)
Q Consensus 1 ~~l~lL~~l~-~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l---~~id~~~l~~~l~~~Q~~~ 76 (177)
++++||++.+ .+++|+.+.++++|++++|||++.|++++|+.+||.||.+|.+++.+ +.+|++++++||.++|++|
T Consensus 63 ~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pd 142 (342)
T COG5029 63 NSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPD 142 (342)
T ss_pred chHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCC
Confidence 4678888777 78999999999999999999999999999999999999999999754 5678889999999999999
Q ss_pred C-CccCCC-----cchHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 77 S-DNLQPS-----QLSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 77 G-F~gr~~-----k~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
| |.+.-+ +..|.|++++++||... .-+.+. .+|||+| |||+..|+.|+|+++||||+|+|++|+.
T Consensus 143 GsF~~~~~gevDtr~~Y~al~ilsllg~~~---~~~~e~~vdyl~kCqnye-GGFg~~p~aEaHag~tFcalaalalL~~ 218 (342)
T COG5029 143 GSFRSDLEGEVDTRFLYIALSILSLLGDLD---KELFEGAVDYLKKCQNYE-GGFGLCPYAEAHAGYTFCALAALALLGK 218 (342)
T ss_pred CceecccCCcchHHHHHHHHHHHHHHhhcc---hhhhHHHHHHHHHhhccC-CcccCCCchhhccchHHHHHHHHHHHhc
Confidence 9 986543 39999999999999763 233333 6899999 9999999999999999999999999988
Q ss_pred CCCCCCcCCc
Q psy18133 146 PTPDVLPVDP 155 (177)
Q Consensus 146 ~~~~l~~~~p 155 (177)
+..++-
T Consensus 219 ----Ld~ls~ 224 (342)
T COG5029 219 ----LDKLSD 224 (342)
T ss_pred ----ccccch
Confidence 445443
No 20
>KOG0367|consensus
Probab=99.94 E-value=5e-27 Score=193.86 Aligned_cols=140 Identities=16% Similarity=0.211 Sum_probs=124.2
Q ss_pred cccccCCCChhcHHHHHHHHHhccCC---CC-----CccCC----------CCCCCChHHHHHHHHHHHHhCC-CCccCH
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNF---DG-----GFGSR----------PGSESHAGLTYCCVGFLSITGH-LHEIDA 62 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~---dG-----GF~~~----------pg~esh~~~Ty~Al~~L~llg~-l~~id~ 62 (177)
.|++||.++.++++.+++||++.|.. ++ ||.+. +.+++|+++||+++++|.++|+ ++.+|+
T Consensus 48 GLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDr 127 (347)
T KOG0367|consen 48 GLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDR 127 (347)
T ss_pred chhhhhhhhccchhHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhH
Confidence 47899999999999999999999862 12 56542 4568999999999999999995 688999
Q ss_pred HHHHHHHHHcCCCCC-CccCCC------cchHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCH
Q psy18133 63 DKLAWWLAERGDHSS-DNLQPS------QLSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDP 130 (177)
Q Consensus 63 ~~l~~~l~~~Q~~~G-F~gr~~------k~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~ 130 (177)
+.+++++..+|.+|| |..... |+.|||+++++||+.+ ..+|+++ .+||++| |||+..|+.|||+
T Consensus 128 ksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~---s~iD~ek~~~yI~~~q~Yd-gGfg~~pg~EsHg 203 (347)
T KOG0367|consen 128 KSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFW---SGIDKEKLIGYIRSSQRYD-GGFGQHPGGESHG 203 (347)
T ss_pred HHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccc---cccCHHHHHHHHHHhhccc-cccccCCCCCCCc
Confidence 999999999999999 964332 4999999999999977 7789887 6899999 9999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q psy18133 131 FHTLFGVAALTMLDP 145 (177)
Q Consensus 131 ~~T~~alasL~ll~~ 145 (177)
++||||+|+|+|+++
T Consensus 204 G~TfCAlAsL~L~~~ 218 (347)
T KOG0367|consen 204 GATFCALASLALMGK 218 (347)
T ss_pred chhHHHHHHHHHHhh
Confidence 999999999999988
No 21
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.73 E-value=1.7e-17 Score=119.41 Aligned_cols=100 Identities=23% Similarity=0.290 Sum_probs=78.4
Q ss_pred HHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHH--HHHHHHcCCCCC-CccCCCc------chHH
Q psy18133 18 VEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL--AWWLAERGDHSS-DNLQPSQ------LSWY 88 (177)
Q Consensus 18 ~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l--~~~l~~~Q~~~G-F~gr~~k------~ty~ 88 (177)
|+||+++|++||||+.. +.++|+..|++|+.+|..++.. .+++++ ++||.++|++|| |...++. ++++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~--~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEE--PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSH--HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999998 9999999999999999999963 368889 999999999999 9877742 7899
Q ss_pred HHHHHhhhCCcccCCccchhh---hcccCCCCCCcc
Q psy18133 89 NFVRAHFEGDFFSGRFCNRAS---LVSLDVESGGIS 121 (177)
Q Consensus 89 a~a~l~lL~~~~~~~~~d~~~---l~cq~~d~GGF~ 121 (177)
+++++.+++.....+.+.+.. ++||+++ |||+
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~d-Gg~~ 112 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPD-GGWG 112 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TT-SSB-
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCCC-CCCC
Confidence 999999999773211222222 7899998 9997
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.60 E-value=8.6e-15 Score=118.73 Aligned_cols=129 Identities=29% Similarity=0.436 Sum_probs=105.7
Q ss_pred hhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-CccCC---C---
Q psy18133 11 AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DNLQP---S--- 83 (177)
Q Consensus 11 ~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~gr~---~--- 83 (177)
....+++++||.++|++|||| .++.++|...|++++.+|..++.......+++++||.++|..+| |.... .
T Consensus 159 ~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~ 236 (300)
T cd00688 159 DPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLS 236 (300)
T ss_pred cHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcC
Confidence 457899999999999999999 78889999999999999999987545668899999999999999 76543 1
Q ss_pred c--chHHHHHHHhhhCCcccCCccchhh---hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHh
Q psy18133 84 Q--LSWYNFVRAHFEGDFFSGRFCNRAS---LVSLDVESGGISDRPLDIPDPFHTLFGVAALTM 142 (177)
Q Consensus 84 k--~ty~a~a~l~lL~~~~~~~~~d~~~---l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~l 142 (177)
. +++|++.+|..++.......+.+-. +..|+.+ |||...|...+|.++|++++.+|+.
T Consensus 237 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~-G~w~~~~~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 237 DSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNED-GGFSSKPGKSYDTQHTVFALLALSL 299 (300)
T ss_pred chHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCC-CCcCcCCCCCCcchhhHHHHHHHhc
Confidence 1 8899999998887531001222221 4678877 9999999999999999999999975
No 23
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.57 E-value=4.2e-15 Score=91.24 Aligned_cols=44 Identities=52% Similarity=0.995 Sum_probs=42.6
Q ss_pred hcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhC
Q psy18133 12 INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITG 55 (177)
Q Consensus 12 ~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg 55 (177)
||++++++||++||++||||+..|+.++|+.+||||+++|+++|
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999986
No 24
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.56 E-value=3.5e-14 Score=115.15 Aligned_cols=133 Identities=23% Similarity=0.306 Sum_probs=108.3
Q ss_pred ChhcHHHHHHHHHhccCCCCCccCCCCC-CCChHHHHHHHHHHHHhCCC---CccCHHHHHHHHHHcCCCCC-CccCC--
Q psy18133 10 DAINLSKAVEFILSCCNFDGGFGSRPGS-ESHAGLTYCCVGFLSITGHL---HEIDADKLAWWLAERGDHSS-DNLQP-- 82 (177)
Q Consensus 10 ~~~~~~~~~~~I~scq~~dGGF~~~pg~-esh~~~Ty~Al~~L~llg~l---~~id~~~l~~~l~~~Q~~~G-F~gr~-- 82 (177)
...++++.++||.++|++||||+..++. +++...|++++.+|..++.. .....+++++||.++|+++| |....
T Consensus 50 ~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~ 129 (300)
T cd00688 50 ADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPG 129 (300)
T ss_pred chHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCC
Confidence 3467899999999999999999998887 89999999999999999863 34457899999999999998 75221
Q ss_pred -------C---cchHHHHHHHhhhCCcccCCccchhh---hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 83 -------S---QLSWYNFVRAHFEGDFFSGRFCNRAS---LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 83 -------~---k~ty~a~a~l~lL~~~~~~~~~d~~~---l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
. ..+++++.+|.+++.......+++.. .++|+.+ ||| .++.++|.++|++++.+|..++.
T Consensus 130 ~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~-g~~--~~~~~~~~~~t~~~~~aL~~~~~ 202 (300)
T cd00688 130 NHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYD-GGF--GPGGESHGYGTACAAAALALLGD 202 (300)
T ss_pred CCcccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCC-CCc--CCCccccHHHHHHHHHHHHHcCC
Confidence 1 17999999999998752101222222 5799988 999 78889999999999999999876
No 25
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.50 E-value=8.5e-14 Score=111.48 Aligned_cols=63 Identities=25% Similarity=0.319 Sum_probs=56.7
Q ss_pred ChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcC
Q psy18133 10 DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERG 73 (177)
Q Consensus 10 ~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q 73 (177)
..+|.+++++||..+|+.||||+...+....+..||+||.++.+||. +.+.+|++++||.++.
T Consensus 4 ~~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~-evPr~EktiefL~d~~ 66 (274)
T COG1689 4 RYINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGH-EVPRKEKTIEFLYDQM 66 (274)
T ss_pred hhhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCC-cCchHHHHHHHHHHHH
Confidence 35899999999999999999999998887779999999999999996 6677899999999843
No 26
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.47 E-value=5.2e-13 Score=122.86 Aligned_cols=133 Identities=23% Similarity=0.189 Sum_probs=103.0
Q ss_pred hcHHHHHHHHHhccCCCCCccCCC---------------------CCCCChHHHHHHHHHHHHhCCCCc------c--CH
Q psy18133 12 INLSKAVEFILSCCNFDGGFGSRP---------------------GSESHAGLTYCCVGFLSITGHLHE------I--DA 62 (177)
Q Consensus 12 ~~~~~~~~~I~scq~~dGGF~~~p---------------------g~esh~~~Ty~Al~~L~llg~l~~------i--d~ 62 (177)
...++.++||++|||.||||+... ...+++..|-.+|.+|..++.... + -+
T Consensus 400 ~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai 479 (634)
T TIGR03463 400 ARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAI 479 (634)
T ss_pred HHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHH
Confidence 346678999999999999999432 135688899999999998875322 1 25
Q ss_pred HHHHHHHHHcCCCCC-CccCCCc----chHHHHHHHhhhCCcccCCccchhh---hcccCCCCCCccCC----------C
Q psy18133 63 DKLAWWLAERGDHSS-DNLQPSQ----LSWYNFVRAHFEGDFFSGRFCNRAS---LVSLDVESGGISDR----------P 124 (177)
Q Consensus 63 ~~l~~~l~~~Q~~~G-F~gr~~k----~ty~a~a~l~lL~~~~~~~~~d~~~---l~cq~~d~GGF~~~----------p 124 (177)
++.++||++.|++|| |.|+.+. .|+|++.+|...|.......+++.. ++||+.| ||++.. +
T Consensus 480 ~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~D-GgWg~~~~s~~~~~y~~ 558 (634)
T TIGR03463 480 SRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRAD-GGWGEVYESCLQARYVE 558 (634)
T ss_pred HHHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCC-CCccCccCccccccccC
Confidence 789999999999999 8877553 4789999998888653323444443 6899999 999863 4
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q psy18133 125 LDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 125 ~~~~d~~~T~~alasL~ll~~ 145 (177)
+.+++...|.|||.+|...+.
T Consensus 559 ~~~S~~~~TA~Al~aL~~~g~ 579 (634)
T TIGR03463 559 GKQSQAVMTSWALLALAEAGE 579 (634)
T ss_pred CCCCcHHHHHHHHHHHHHcCC
Confidence 567999999999999998875
No 27
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.32 E-value=1.7e-11 Score=112.89 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=97.4
Q ss_pred hcHHHHHHHHHhccCCCCCccCC-CC--------------------CCCChHHHHHHHHHHHHhCCCCcc-------CHH
Q psy18133 12 INLSKAVEFILSCCNFDGGFGSR-PG--------------------SESHAGLTYCCVGFLSITGHLHEI-------DAD 63 (177)
Q Consensus 12 ~~~~~~~~~I~scq~~dGGF~~~-pg--------------------~esh~~~Ty~Al~~L~llg~l~~i-------d~~ 63 (177)
...++.++||+++|++||||+.. +. ..++...|..++.+|..++..... -++
T Consensus 400 ~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~ 479 (634)
T cd02892 400 ERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIR 479 (634)
T ss_pred HHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence 34678899999999999999842 11 246778899999999998864322 267
Q ss_pred HHHHHHHHcCCCCC-CccCCCc-c---hHHHHHHHhhhCCc-ccCCccchhh---hcccCCCCCCccCC----------C
Q psy18133 64 KLAWWLAERGDHSS-DNLQPSQ-L---SWYNFVRAHFEGDF-FSGRFCNRAS---LVSLDVESGGISDR----------P 124 (177)
Q Consensus 64 ~l~~~l~~~Q~~~G-F~gr~~k-~---ty~a~a~l~lL~~~-~~~~~~d~~~---l~cq~~d~GGF~~~----------p 124 (177)
+.++||.+.|++|| |-|+.+. | +++++.+|...|.. .....+++.. ++||+.| |||+.. +
T Consensus 480 rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~D-GgWge~~~s~~~~~~~~ 558 (634)
T cd02892 480 RAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPD-GGWGESYLSYEDKSYAG 558 (634)
T ss_pred HHHHHHHHccCCCCCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCC-CCCCCccccccCcccCC
Confidence 89999999999999 8776543 4 55677777777754 1111222222 6899998 999853 3
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q psy18133 125 LDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 125 ~~~~d~~~T~~alasL~ll~~ 145 (177)
+..++...|.+|+.+|...+.
T Consensus 559 ~~~s~~~~TA~AllaLl~~g~ 579 (634)
T cd02892 559 GGRSTVVQTAWALLALMAAGE 579 (634)
T ss_pred CCCCcHHHHHHHHHHHHHcCC
Confidence 456889999999999987765
No 28
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.24 E-value=7.7e-12 Score=76.63 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=32.5
Q ss_pred hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcC
Q psy18133 110 LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLD 144 (177)
Q Consensus 110 l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~ 144 (177)
++||+++ |||+++|++++|++||||++++|+++|
T Consensus 11 ~~~Q~~d-GGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 11 LSCQNPD-GGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHTBBTT-SSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred HHHCCCC-CCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 6899988 999999999999999999999999986
No 29
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.23 E-value=5.8e-12 Score=90.45 Aligned_cols=68 Identities=29% Similarity=0.430 Sum_probs=56.8
Q ss_pred hcHHHH--HHHHHhccCCCCCccCCC-CCCCChHHHHHHHHHHHHhCCCCc-cCHHHHHHHHHHcCCCCC-Cc
Q psy18133 12 INLSKA--VEFILSCCNFDGGFGSRP-GSESHAGLTYCCVGFLSITGHLHE-IDADKLAWWLAERGDHSS-DN 79 (177)
Q Consensus 12 ~~~~~~--~~~I~scq~~dGGF~~~p-g~esh~~~Ty~Al~~L~llg~l~~-id~~~l~~~l~~~Q~~~G-F~ 79 (177)
.+++++ ++||.++|++||||+..+ +.++|+..|++++++|.+++..+. ..+++.++||.++|+++| |.
T Consensus 40 ~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 40 PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence 368889 999999999999999998 678899999999999999997543 567889999999999999 85
No 30
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.22 E-value=1.3e-10 Score=98.65 Aligned_cols=133 Identities=18% Similarity=0.223 Sum_probs=96.1
Q ss_pred hcHHHHHHHHHhccCCCCCccCC-C------------------CCCCChHHHHHHHHHHHHhCCCCcc-------CHHHH
Q psy18133 12 INLSKAVEFILSCCNFDGGFGSR-P------------------GSESHAGLTYCCVGFLSITGHLHEI-------DADKL 65 (177)
Q Consensus 12 ~~~~~~~~~I~scq~~dGGF~~~-p------------------g~esh~~~Ty~Al~~L~llg~l~~i-------d~~~l 65 (177)
...++.++||.++|++||||... + ...++...|..++.+|..++..... -.++.
T Consensus 117 ~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a 196 (348)
T cd02889 117 ERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRA 196 (348)
T ss_pred HHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Confidence 45678899999999999999843 2 1346788899999999998864321 25689
Q ss_pred HHHHHHcCCCCC-CccCCCc-c---hHHHHHHHhhhCCcccCCccchhh---hcccCCCCCCccCC----------CCCC
Q psy18133 66 AWWLAERGDHSS-DNLQPSQ-L---SWYNFVRAHFEGDFFSGRFCNRAS---LVSLDVESGGISDR----------PLDI 127 (177)
Q Consensus 66 ~~~l~~~Q~~~G-F~gr~~k-~---ty~a~a~l~lL~~~~~~~~~d~~~---l~cq~~d~GGF~~~----------p~~~ 127 (177)
++||.+.|.++| |.++.+. + +.+++.+|...|.......+++.. ++||+.+ |||+.. ++..
T Consensus 197 ~~~L~~~q~~dG~w~~~~~~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~d-G~w~~~~~~~~~~~~~~~~~ 275 (348)
T cd02889 197 VKYLEREQEPDGSWYGRWGVCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPD-GGWGESYESYEDPSYAGGGR 275 (348)
T ss_pred HHHHHHhCCCCCCccccCCCcchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCC-CCcCCcccccccccccCCCC
Confidence 999999999999 8665432 3 445666666666531111222221 5799998 999863 3567
Q ss_pred CCHHHHHHHHHHHHhcCC
Q psy18133 128 PDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 128 ~d~~~T~~alasL~ll~~ 145 (177)
++...|.++|.+|...+.
T Consensus 276 ~~~~~Ta~al~aL~~~g~ 293 (348)
T cd02889 276 STVVQTAWALLALMAAGE 293 (348)
T ss_pred CcHHHHHHHHHHHHhcCC
Confidence 899999999999988765
No 31
>PLN02993 lupeol synthase
Probab=99.15 E-value=3.4e-10 Score=105.64 Aligned_cols=133 Identities=14% Similarity=0.166 Sum_probs=99.8
Q ss_pred hcHHHHHHHHHhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHHhCCCC------cc--CH
Q psy18133 12 INLSKAVEFILSCCNFDGGFGSRPG---------------------SESHAGLTYCCVGFLSITGHLH------EI--DA 62 (177)
Q Consensus 12 ~~~~~~~~~I~scq~~dGGF~~~pg---------------------~esh~~~Ty~Al~~L~llg~l~------~i--d~ 62 (177)
.-..+.++||++.||.||||+.... ..+..--|-.+|.+|.++++.. .| -+
T Consensus 513 ~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i 592 (763)
T PLN02993 513 EQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSI 592 (763)
T ss_pred HHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHH
Confidence 3466789999999999999985321 1356667888899999887532 12 25
Q ss_pred HHHHHHHHHcCCCCC-CccCCCc-c---hHHHHHHHhhhCCcccC-Cccchhh---hcccCCCCCCccCCC---------
Q psy18133 63 DKLAWWLAERGDHSS-DNLQPSQ-L---SWYNFVRAHFEGDFFSG-RFCNRAS---LVSLDVESGGISDRP--------- 124 (177)
Q Consensus 63 ~~l~~~l~~~Q~~~G-F~gr~~k-~---ty~a~a~l~lL~~~~~~-~~~d~~~---l~cq~~d~GGF~~~p--------- 124 (177)
++.++||.+.|.+|| |.|+.+- | |++|+.+|...|...+. ..+.+.. +++|+.| ||++..-
T Consensus 593 ~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~D-GGWGEs~~S~~~~~y~ 671 (763)
T PLN02993 593 EKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDD-GGWGESYLSCPEQRYI 671 (763)
T ss_pred HHHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCC-CCcCcCcCcCCCcccc
Confidence 789999999999999 9888764 4 77888888887765321 2333332 7899998 9998732
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCC
Q psy18133 125 ---LDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 125 ---~~~~d~~~T~~alasL~ll~~ 145 (177)
++.|+++.|.||+.+|.-.|.
T Consensus 672 ~~~~~~St~~qTAwAllaL~~aG~ 695 (763)
T PLN02993 672 PLEGNRSNLVQTAWAMMGLIHAGQ 695 (763)
T ss_pred cCCCCCCchhhHHHHHHHHHHcCC
Confidence 346899999999999988775
No 32
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.13 E-value=5.7e-10 Score=102.88 Aligned_cols=133 Identities=14% Similarity=0.056 Sum_probs=93.1
Q ss_pred hcHHHHHHHHHhccCCCCCccCCCC-------------------CCCChHHHHHHHHHHHHhCCC-CccCHHHHHHHHHH
Q psy18133 12 INLSKAVEFILSCCNFDGGFGSRPG-------------------SESHAGLTYCCVGFLSITGHL-HEIDADKLAWWLAE 71 (177)
Q Consensus 12 ~~~~~~~~~I~scq~~dGGF~~~pg-------------------~esh~~~Ty~Al~~L~llg~l-~~id~~~l~~~l~~ 71 (177)
...++.++||+++|+.||||+.... ..++...|-.++.+|...+.. +..-+++.++||.+
T Consensus 403 ~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~ 482 (635)
T TIGR01507 403 DAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKR 482 (635)
T ss_pred HHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 4677899999999999999975211 135666788888888877642 12236789999999
Q ss_pred cCCCCC-CccCCCc-chHH---HHHHHhhhCCcccCCccchhh---hcccCCCCCCccCC----------CCCCCCHHHH
Q psy18133 72 RGDHSS-DNLQPSQ-LSWY---NFVRAHFEGDFFSGRFCNRAS---LVSLDVESGGISDR----------PLDIPDPFHT 133 (177)
Q Consensus 72 ~Q~~~G-F~gr~~k-~ty~---a~a~l~lL~~~~~~~~~d~~~---l~cq~~d~GGF~~~----------p~~~~d~~~T 133 (177)
.|++|| +-|+.+. |+|. ++.+|+..|.....+.+.+.. ++||+.| |||+.. ...++|...|
T Consensus 483 ~Q~~dG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~D-GGWge~~~sy~~~~~~g~g~s~~s~T 561 (635)
T TIGR01507 483 EQEPDGSWFGRWGVNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPD-GGWGEDCRSYEDPAYAGKGASTASQT 561 (635)
T ss_pred ccCCCCCCccCCCCccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCC-CCCCCCCcccccccccCCCCCcHHHH
Confidence 999999 7676553 5554 444555444321112233332 6899999 999853 2247899999
Q ss_pred HHHHHHHHhcCC
Q psy18133 134 LFGVAALTMLDP 145 (177)
Q Consensus 134 ~~alasL~ll~~ 145 (177)
.|+|.+|...+.
T Consensus 562 A~AL~AL~~ag~ 573 (635)
T TIGR01507 562 AWALIALIAAGR 573 (635)
T ss_pred HHHHHHHHHhCC
Confidence 999999998775
No 33
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.09 E-value=7.1e-10 Score=102.07 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=94.5
Q ss_pred hcHHHHHHHHHhccCCCCCccCCC-C--------------------CCCChHHHHHHHHHHHHhCCC-Ccc--CHHHHHH
Q psy18133 12 INLSKAVEFILSCCNFDGGFGSRP-G--------------------SESHAGLTYCCVGFLSITGHL-HEI--DADKLAW 67 (177)
Q Consensus 12 ~~~~~~~~~I~scq~~dGGF~~~p-g--------------------~esh~~~Ty~Al~~L~llg~l-~~i--d~~~l~~ 67 (177)
...++.++||.++|+.||||+... . ..+....|-.+|.+|...+.. +.+ .+++.++
T Consensus 388 ~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~ 467 (621)
T TIGR01787 388 DRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALE 467 (621)
T ss_pred HHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHH
Confidence 346689999999999999998432 1 123345788999998887631 112 3688999
Q ss_pred HHHHcCCCCC-CccCCCc-c---hHHHHHHHhhhCCcccC-Cccchhh---hcccCCCCCCccCCC----------CCCC
Q psy18133 68 WLAERGDHSS-DNLQPSQ-L---SWYNFVRAHFEGDFFSG-RFCNRAS---LVSLDVESGGISDRP----------LDIP 128 (177)
Q Consensus 68 ~l~~~Q~~~G-F~gr~~k-~---ty~a~a~l~lL~~~~~~-~~~d~~~---l~cq~~d~GGF~~~p----------~~~~ 128 (177)
||.+.|.+|| |.|+.+. | |.+++.+|..+|..... +.+.+.. +++|+.| |||+... ...|
T Consensus 468 ~L~~~Q~~DGsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~D-GGWge~~~s~~~~~y~~~~~S 546 (621)
T TIGR01787 468 YLRREQRADGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPD-GGWGEDCFSYEDPSYVGSGGS 546 (621)
T ss_pred HHHHhcCCCCCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCC-CCCCcCCccccccccCCCCCC
Confidence 9999999999 8777653 4 55667777777754211 1122222 6899998 9998643 2468
Q ss_pred CHHHHHHHHHHHHhcCC
Q psy18133 129 DPFHTLFGVAALTMLDP 145 (177)
Q Consensus 129 d~~~T~~alasL~ll~~ 145 (177)
|...|.|||.+|...+.
T Consensus 547 ~~s~Ta~AL~AL~~ag~ 563 (621)
T TIGR01787 547 TPSQTGWALMALIAAGE 563 (621)
T ss_pred CHHHHHHHHHHHHHcCc
Confidence 99999999999987765
No 34
>PLN03012 Camelliol C synthase
Probab=99.09 E-value=1e-09 Score=102.27 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=98.2
Q ss_pred hcHHHHHHHHHhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHHhCCCCc------cC--H
Q psy18133 12 INLSKAVEFILSCCNFDGGFGSRPG---------------------SESHAGLTYCCVGFLSITGHLHE------ID--A 62 (177)
Q Consensus 12 ~~~~~~~~~I~scq~~dGGF~~~pg---------------------~esh~~~Ty~Al~~L~llg~l~~------id--~ 62 (177)
.-..+.++||++.||.||||+.... ..+..--|-.+|.+|.++++... ++ +
T Consensus 513 ~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i 592 (759)
T PLN03012 513 EQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFI 592 (759)
T ss_pred HHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHH
Confidence 3466799999999999999865321 23444457788888888875321 32 5
Q ss_pred HHHHHHHHHcCCCCC-CccCCCc----chHHHHHHHhhhCCcccC-Cccchhh---hcccCCCCCCccCCC---------
Q psy18133 63 DKLAWWLAERGDHSS-DNLQPSQ----LSWYNFVRAHFEGDFFSG-RFCNRAS---LVSLDVESGGISDRP--------- 124 (177)
Q Consensus 63 ~~l~~~l~~~Q~~~G-F~gr~~k----~ty~a~a~l~lL~~~~~~-~~~d~~~---l~cq~~d~GGF~~~p--------- 124 (177)
.+.++||.+.|++|| |.|+.+- -|++|+.+|...|...+. +.|.+.. ++.|+.| ||++..-
T Consensus 593 ~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~D-GGWGEs~~Sc~~~~y~ 671 (759)
T PLN03012 593 KKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDN-GGWGESYLSCPKKIYI 671 (759)
T ss_pred HHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCC-CCcCCCCCCCCCcccc
Confidence 689999999999999 9998875 366778888777765321 2232322 6899998 9999843
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCC
Q psy18133 125 ---LDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 125 ---~~~~d~~~T~~alasL~ll~~ 145 (177)
+..|++..|.||+.||...+.
T Consensus 672 ~~~~~~S~~~qTaWAl~aLi~ag~ 695 (759)
T PLN03012 672 AQEGEISNLVQTAWALMGLIHAGQ 695 (759)
T ss_pred CCCCCCCcHHHHHHHHHHHHHcCC
Confidence 346899999999999988876
No 35
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=98.79 E-value=5.9e-08 Score=82.45 Aligned_cols=127 Identities=17% Similarity=0.052 Sum_probs=88.8
Q ss_pred HHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCC--CccCHHHHHHHHHHcC--------------CCCC-
Q psy18133 15 SKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHL--HEIDADKLAWWLAERG--------------DHSS- 77 (177)
Q Consensus 15 ~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l--~~id~~~l~~~l~~~Q--------------~~~G- 77 (177)
++.++||.+.|++|||++..+ ++...|..++.+|...+.. ....+++.++||.+.| .++|
T Consensus 2 ~~~~~~L~~~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Gg 78 (348)
T cd02889 2 RRALDFLLSLQAPDGHWPGEY---SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGG 78 (348)
T ss_pred chHHHHHHHhccCCCCccccC---CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCc
Confidence 578999999999999999876 8999999999999888752 2335789999999999 5666
Q ss_pred Cc--cCC----Cc-chHHHHHHHhhhCCcccC-Cccchh-----h---hcccCCCCCCccCCCC----------------
Q psy18133 78 DN--LQP----SQ-LSWYNFVRAHFEGDFFSG-RFCNRA-----S---LVSLDVESGGISDRPL---------------- 125 (177)
Q Consensus 78 F~--gr~----~k-~ty~a~a~l~lL~~~~~~-~~~d~~-----~---l~cq~~d~GGF~~~p~---------------- 125 (177)
+. .+. +- .|=.++.+|..++...+. ..++.+ . +++|+.+ |||.....
T Consensus 79 w~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~d-G~f~~~~~~~~~~~~~~~~~~~~~ 157 (348)
T cd02889 79 WAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSN-GGFAAFEPDNTYKYLELIPEVDGD 157 (348)
T ss_pred CcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCC-CCEeeecCCccHHHHhcCchhhcC
Confidence 43 222 11 444455555555544210 011221 1 6799988 99985321
Q ss_pred ---CCCCHHHHHHHHHHHHhcCC
Q psy18133 126 ---DIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 126 ---~~~d~~~T~~alasL~ll~~ 145 (177)
..+++..|-.++.+|..++.
T Consensus 158 ~~~~~~~~~~Ta~~l~aL~~~~~ 180 (348)
T cd02889 158 IMIDPPYVECTGSVLEALGLFGK 180 (348)
T ss_pred CccCCCCcchHHHHHHHHHHhhh
Confidence 24577789999999998876
No 36
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=98.69 E-value=9e-08 Score=88.46 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=79.5
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCC-CccCHHHHHHHHHHcCCCCC-CccCCC--------
Q psy18133 14 LSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHL-HEIDADKLAWWLAERGDHSS-DNLQPS-------- 83 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l-~~id~~~l~~~l~~~Q~~~G-F~gr~~-------- 83 (177)
.++.++||++.|++||||.+.-+ ....-.|++|+.+|...|.. +...+++.++||.++|++|| |.++..
T Consensus 479 i~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~ 557 (634)
T TIGR03463 479 ISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYV 557 (634)
T ss_pred HHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCcccccccc
Confidence 57889999999999999976533 23445789999999988862 33457899999999999999 864321
Q ss_pred ----c---chHHHHHHHhhhCCcccCCccchhh---hcccCCCCCCccCCC
Q psy18133 84 ----Q---LSWYNFVRAHFEGDFFSGRFCNRAS---LVSLDVESGGISDRP 124 (177)
Q Consensus 84 ----k---~ty~a~a~l~lL~~~~~~~~~d~~~---l~cq~~d~GGF~~~p 124 (177)
. -|.||+.+|...|.... +.+.+.. ++.|+.+ ||+...+
T Consensus 558 ~~~~S~~~~TA~Al~aL~~~g~~~~-~~i~rgi~~L~~~Q~~d-G~W~~~~ 606 (634)
T TIGR03463 558 EGKQSQAVMTSWALLALAEAGEGGH-DAVQRGVAWLRSRQQED-GRWPREP 606 (634)
T ss_pred CCCCCcHHHHHHHHHHHHHcCCcCC-HHHHHHHHHHHHhCCCC-CCCCCCc
Confidence 1 58899999988875421 1222222 5689988 9998865
No 37
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=98.62 E-value=1.7e-07 Score=86.65 Aligned_cols=107 Identities=13% Similarity=0.067 Sum_probs=76.8
Q ss_pred cHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCC--CccCHHHHHHHHHHcCCCCC-CccCC-------
Q psy18133 13 NLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHL--HEIDADKLAWWLAERGDHSS-DNLQP------- 82 (177)
Q Consensus 13 ~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l--~~id~~~l~~~l~~~Q~~~G-F~gr~------- 82 (177)
-.++.++||.++|++||||.+.- ...+...|+.|+.+|...|.. .....++.++||+++|++|| |...+
T Consensus 477 ~i~rAv~~L~~~Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~ 555 (634)
T cd02892 477 AIRRAVKYLLREQEPDGSWYGRW-GVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKS 555 (634)
T ss_pred HHHHHHHHHHHccCCCCCccccC-CCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcc
Confidence 37789999999999999996543 345667788899999998863 23457899999999999999 86321
Q ss_pred ----Cc----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCC
Q psy18133 83 ----SQ----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRP 124 (177)
Q Consensus 83 ----~k----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p 124 (177)
+. .|-||+.+|...+.. +....++ +++|+.+ |||....
T Consensus 556 ~~~~~~s~~~~TA~AllaLl~~g~~---~~~~i~r~i~wL~~~Q~~~-G~w~~~~ 606 (634)
T cd02892 556 YAGGGRSTVVQTAWALLALMAAGEP---DSEAVERGIKYLLNTQLPD-GDWPQEE 606 (634)
T ss_pred cCCCCCCcHHHHHHHHHHHHHcCCC---ChHHHHHHHHHHHHcCCCC-CCCCCcc
Confidence 11 577777777665543 2112222 5789888 9998743
No 38
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.55 E-value=5.8e-08 Score=69.39 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=20.7
Q ss_pred HHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCc-cCHHHHHHHHHHcCCCCC-CccCCCcchH---HH
Q psy18133 15 SKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHE-IDADKLAWWLAERGDHSS-DNLQPSQLSW---YN 89 (177)
Q Consensus 15 ~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~-id~~~l~~~l~~~Q~~~G-F~gr~~k~ty---~a 89 (177)
+++++||++-|++|||++.. .+++...|++++.+|...+.-.. .-.++.++||.++|++|| |...+..+.+ .+
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~--~~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~~~~~~t~~~ 79 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYN--WGSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGGEYVSMTAAA 79 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS--HHHHHHHH
T ss_pred cccccccccccccccccccc--ccccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCCCCHHHHHHH
Confidence 67899999999999999765 33678899999999998875311 235889999999999999 9877654333 33
Q ss_pred HHHHhhh
Q psy18133 90 FVRAHFE 96 (177)
Q Consensus 90 ~a~l~lL 96 (177)
++++.+.
T Consensus 80 ~~~l~~~ 86 (109)
T PF13243_consen 80 IAALALA 86 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444333
No 39
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=98.54 E-value=7.1e-07 Score=82.59 Aligned_cols=108 Identities=18% Similarity=0.134 Sum_probs=76.2
Q ss_pred cHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCC-CccCHHHHHHHHHHcCCCCC-CccCC--------
Q psy18133 13 NLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHL-HEIDADKLAWWLAERGDHSS-DNLQP-------- 82 (177)
Q Consensus 13 ~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l-~~id~~~l~~~l~~~Q~~~G-F~gr~-------- 82 (177)
-+++.++||.+.|++|||+-+.-+ ..+.-.|..++.+|...|.. ....+++.++||.++|++|| |....
T Consensus 472 ~i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~ 550 (635)
T TIGR01507 472 VIERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAY 550 (635)
T ss_pred HHHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccc
Confidence 467899999999999999633322 34455677778888776642 22346789999999999999 85321
Q ss_pred ----Cc---chHHHHHHHhhhCCcccCCccchhh---hcccCCCCCCccCC
Q psy18133 83 ----SQ---LSWYNFVRAHFEGDFFSGRFCNRAS---LVSLDVESGGISDR 123 (177)
Q Consensus 83 ----~k---~ty~a~a~l~lL~~~~~~~~~d~~~---l~cq~~d~GGF~~~ 123 (177)
.. -|.||+.+|...+.... +.+.+.. +++|+.+ ||+...
T Consensus 551 ~g~g~s~~s~TA~AL~AL~~ag~~~~-~~I~rav~~L~~~Q~~d-G~W~e~ 599 (635)
T TIGR01507 551 AGKGASTASQTAWALIALIAAGRAES-EAARRGVQYLVETQRPD-GGWDEP 599 (635)
T ss_pred cCCCCCcHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHhcCCC-CCCCCc
Confidence 11 68999999988775421 2333333 5799988 999875
No 40
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=98.51 E-value=5.3e-07 Score=83.23 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=78.0
Q ss_pred cHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCc--cCHHHHHHHHHHcCCCCC-CccCCC------
Q psy18133 13 NLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHE--IDADKLAWWLAERGDHSS-DNLQPS------ 83 (177)
Q Consensus 13 ~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~--id~~~l~~~l~~~Q~~~G-F~gr~~------ 83 (177)
..++.++||.++|++||+|.+.-+. .....|.+++.+|..+|.... ...++.++||+++|++|| |.....
T Consensus 461 ~i~rAl~~L~~~Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~ 539 (621)
T TIGR01787 461 VLERALEYLRREQRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPS 539 (621)
T ss_pred HHHHHHHHHHHhcCCCCCCcccCCC-CCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccc
Confidence 4688999999999999998664332 334457788888888886422 346889999999999999 864321
Q ss_pred -----c----chHHHHHHHhhhCCcccCCccchhh---hcccCCCCCCccCCC
Q psy18133 84 -----Q----LSWYNFVRAHFEGDFFSGRFCNRAS---LVSLDVESGGISDRP 124 (177)
Q Consensus 84 -----k----~ty~a~a~l~lL~~~~~~~~~d~~~---l~cq~~d~GGF~~~p 124 (177)
. .|.||+.+|...+.... +.+++.. +++|+.+ |||...+
T Consensus 540 y~~~~~S~~s~Ta~AL~AL~~ag~~~~-~ai~rgv~~L~~~Q~~d-G~w~~~~ 590 (621)
T TIGR01787 540 YVGSGGSTPSQTGWALMALIAAGEADS-EAIERGVKYLLETQRPD-GDWPQEY 590 (621)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCccch-HHHHHHHHHHHHhCCCC-CCCCCcc
Confidence 1 68899998877765421 2233322 5799988 9998744
No 41
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.37 E-value=7.3e-07 Score=71.94 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=65.2
Q ss_pred cHHHHHHHHHhccCCCCCccCCCCC-CCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-CccCCC------c
Q psy18133 13 NLSKAVEFILSCCNFDGGFGSRPGS-ESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DNLQPS------Q 84 (177)
Q Consensus 13 ~~~~~~~~I~scq~~dGGF~~~pg~-esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~gr~~------k 84 (177)
-.+++.+|=.+|- .+|||...|+. ++-+-.||+|+..|.+|+.. --.++.++||.+.|+++| |.-... .
T Consensus 183 ~~~~v~~Fe~~c~-~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~slqN~nGGFRRS~~~GISt~e 259 (274)
T COG1689 183 PKEEVRHFELCCG-DWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISDHIRFIRSLQNQNGGFRRSYELGISTFE 259 (274)
T ss_pred chHHHHhHHhccc-cCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchHHHHHHHHhhcCCCCeeeeEeccccchH
Confidence 3566666666654 57999999975 67789999999999999974 234678999999999999 963332 2
Q ss_pred chHHHHHHHhhhC
Q psy18133 85 LSWYNFVRAHFEG 97 (177)
Q Consensus 85 ~ty~a~a~l~lL~ 97 (177)
+||.|+++|+.|.
T Consensus 260 ~tYrAl~~L~~l~ 272 (274)
T COG1689 260 NTYRALASLASLH 272 (274)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 42
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=98.36 E-value=8.4e-06 Score=68.22 Aligned_cols=126 Identities=21% Similarity=0.226 Sum_probs=82.5
Q ss_pred CChhcHHHHHHHHH-------hccCCCCCccCCCCC--CCChHHHHHHHHHHHHhCCCCccC---HHHHHHHHHHcCCCC
Q psy18133 9 LDAINLSKAVEFIL-------SCCNFDGGFGSRPGS--ESHAGLTYCCVGFLSITGHLHEID---ADKLAWWLAERGDHS 76 (177)
Q Consensus 9 l~~~~~~~~~~~I~-------scq~~dGGF~~~pg~--esh~~~Ty~Al~~L~llg~l~~id---~~~l~~~l~~~Q~~~ 76 (177)
++...+++..+||. +.|++||||+..++. +++.+.|..++-+|........++ .++.++||.++|++|
T Consensus 39 ~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~d 118 (292)
T cd02897 39 LTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSN 118 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCC
Confidence 55445667767776 589999999876544 889999999999998876433343 578999999999999
Q ss_pred C-CccC------------CCc--chHHHHHHHhhhCCcccCCccchhh--h-cccCCCCCCccCCCCCCCCHHHHHHHHH
Q psy18133 77 S-DNLQ------------PSQ--LSWYNFVRAHFEGDFFSGRFCNRAS--L-VSLDVESGGISDRPLDIPDPFHTLFGVA 138 (177)
Q Consensus 77 G-F~gr------------~~k--~ty~a~a~l~lL~~~~~~~~~d~~~--l-~cq~~d~GGF~~~p~~~~d~~~T~~ala 138 (177)
| |... +.. -|=+++.+|...|.......+++.. + +.+. ...+++.+..+..
T Consensus 119 G~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~-----------~~~~~y~~al~a~ 187 (292)
T cd02897 119 GCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALD-----------SISDPYTLALAAY 187 (292)
T ss_pred CCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhcc-----------cCCCHHHHHHHHH
Confidence 9 8632 111 3455666666666431101122221 2 2222 1357888888888
Q ss_pred HHHhcCC
Q psy18133 139 ALTMLDP 145 (177)
Q Consensus 139 sL~ll~~ 145 (177)
+|++.+.
T Consensus 188 AL~~~~~ 194 (292)
T cd02897 188 ALTLAGS 194 (292)
T ss_pred HHHHcCC
Confidence 8888763
No 43
>PLN03012 Camelliol C synthase
Probab=98.33 E-value=2.9e-06 Score=79.56 Aligned_cols=108 Identities=16% Similarity=0.066 Sum_probs=77.3
Q ss_pred cHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCC--ccCHHHHHHHHHHcCCCCC-CccCC-------
Q psy18133 13 NLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLH--EIDADKLAWWLAERGDHSS-DNLQP------- 82 (177)
Q Consensus 13 ~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~--~id~~~l~~~l~~~Q~~~G-F~gr~------- 82 (177)
-..+.++||++.|++|||+.+.=+-. ..--|.+||.+|...|.-. ..-+++.++||.+.|++|| +.+..
T Consensus 591 ~i~rAv~~L~~~Q~~DGsW~G~Wgv~-y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~ 669 (759)
T PLN03012 591 FIKKAAEYIENIQMLDGSWYGNWGIC-FTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKI 669 (759)
T ss_pred HHHHHHHHHHHhcCCCCCCccccccc-CCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCcc
Confidence 36679999999999999999864432 2236888999999888632 1347889999999999998 75322
Q ss_pred ------Cc----chHHHHHHHhhhCCcccC-Cccchhh---hcccCCCCCCccC
Q psy18133 83 ------SQ----LSWYNFVRAHFEGDFFSG-RFCNRAS---LVSLDVESGGISD 122 (177)
Q Consensus 83 ------~k----~ty~a~a~l~lL~~~~~~-~~~d~~~---l~cq~~d~GGF~~ 122 (177)
++ -|.||+.+|...|..... ..+.+.. ++.|..+ |||-.
T Consensus 670 y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~d-G~W~q 722 (759)
T PLN03012 670 YIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLEN-GDFPQ 722 (759)
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCC-CCCCC
Confidence 12 799999999877764210 1223322 6788887 88765
No 44
>PLN02993 lupeol synthase
Probab=98.31 E-value=3.9e-06 Score=78.83 Aligned_cols=108 Identities=18% Similarity=0.125 Sum_probs=77.0
Q ss_pred cHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCc--cCHHHHHHHHHHcCCCCC-CccCC-------
Q psy18133 13 NLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHE--IDADKLAWWLAERGDHSS-DNLQP------- 82 (177)
Q Consensus 13 ~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~--id~~~l~~~l~~~Q~~~G-F~gr~------- 82 (177)
-+++.++||.+.|++||||.+. -....+-.|++||.+|...|.... ..+++.++||.++|++|| +.+..
T Consensus 591 ~i~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~ 669 (763)
T PLN02993 591 SIEKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQR 669 (763)
T ss_pred HHHHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcc
Confidence 3578999999999999999874 334556678999999998886422 457899999999999999 85421
Q ss_pred ------Cc----chHHHHHHHhhhCCcccC-Cccchhh---hcccCCCCCCccC
Q psy18133 83 ------SQ----LSWYNFVRAHFEGDFFSG-RFCNRAS---LVSLDVESGGISD 122 (177)
Q Consensus 83 ------~k----~ty~a~a~l~lL~~~~~~-~~~d~~~---l~cq~~d~GGF~~ 122 (177)
++ -|-||+.+|...|..... ..+.+.. ++-|..+ |+|-.
T Consensus 670 y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~-G~W~q 722 (763)
T PLN02993 670 YIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLEN-GDFPQ 722 (763)
T ss_pred cccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCC-CCCCC
Confidence 11 578999888777754110 1222222 5678777 87655
No 45
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.29 E-value=5.3e-06 Score=68.38 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=66.4
Q ss_pred cHHHHHHHHHhccCCCCCccCCCCC-CCChHHHHHHHHHHHHhCCCCccC---HHHHHHHHHHcCCCCC-CccCCC----
Q psy18133 13 NLSKAVEFILSCCNFDGGFGSRPGS-ESHAGLTYCCVGFLSITGHLHEID---ADKLAWWLAERGDHSS-DNLQPS---- 83 (177)
Q Consensus 13 ~~~~~~~~I~scq~~dGGF~~~pg~-esh~~~Ty~Al~~L~llg~l~~id---~~~l~~~l~~~Q~~~G-F~gr~~---- 83 (177)
.+++.+++|.++|++||||+..++. +++...|.+++..|........++ .++.++||.+.|.++| |.....
T Consensus 50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~ 129 (282)
T cd02891 50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHR 129 (282)
T ss_pred HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCH
Confidence 3567889999999999999998887 899999999999998776533344 5788899999999999 754321
Q ss_pred ----------cchHHHHHHHhhhCC
Q psy18133 84 ----------QLSWYNFVRAHFEGD 98 (177)
Q Consensus 84 ----------k~ty~a~a~l~lL~~ 98 (177)
..+-+++.+|...|.
T Consensus 130 ~~~~~~~~~~~~tA~al~~L~~~g~ 154 (282)
T cd02891 130 EMKGGVDDSVSLTAYVLIALAEAGK 154 (282)
T ss_pred hhcCCcCCCcchHHHHHHHHHHhcc
Confidence 145566666665554
No 46
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=98.02 E-value=1.7e-05 Score=66.81 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=55.1
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccC---HHHHHHHHHHcCCCCC-Ccc
Q psy18133 14 LSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID---ADKLAWWLAERGDHSS-DNL 80 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id---~~~l~~~l~~~Q~~~G-F~g 80 (177)
.++-++.++++|++||||+..++.+++.+.|.+++-+|........+| .++.++||.++|++|| |..
T Consensus 54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e 124 (297)
T cd02896 54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQE 124 (297)
T ss_pred HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCC
Confidence 344556778999999999988888999999999999998877544454 4678999999999999 874
No 47
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=97.85 E-value=1.1e-05 Score=57.38 Aligned_cols=80 Identities=16% Similarity=0.101 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCCCC-CccCCCc---chHHHHHHHhhhCCcccCCccchhh---hcccCCCCCCccCCCCCCCCHHHHHH
Q psy18133 63 DKLAWWLAERGDHSS-DNLQPSQ---LSWYNFVRAHFEGDFFSGRFCNRAS---LVSLDVESGGISDRPLDIPDPFHTLF 135 (177)
Q Consensus 63 ~~l~~~l~~~Q~~~G-F~gr~~k---~ty~a~a~l~lL~~~~~~~~~d~~~---l~cq~~d~GGF~~~p~~~~d~~~T~~ 135 (177)
+++++||.+.|.+|| |.+..+. .++|++.++..++.....+-|.+.. +++|+.| |||+..+.. +...|-.
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~d-G~w~~~~~~--~~~~t~~ 78 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYNWGSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPD-GGWGYSGGE--YVSMTAA 78 (109)
T ss_dssp ---------------------------------------TS-SSBSSHHHHHHHHH---TT-S--S-TS----HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCC-CCCCCcCCC--CHHHHHH
Confidence 578999999999999 8665443 7888888888887542223343333 6899988 999988333 3445556
Q ss_pred HHHHHHhcCC
Q psy18133 136 GVAALTMLDP 145 (177)
Q Consensus 136 alasL~ll~~ 145 (177)
++++|.+.+.
T Consensus 79 ~~~~l~~~~~ 88 (109)
T PF13243_consen 79 AIAALALAGV 88 (109)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhCC
Confidence 6777765544
No 48
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=97.70 E-value=7.9e-05 Score=61.20 Aligned_cols=63 Identities=22% Similarity=0.176 Sum_probs=51.4
Q ss_pred HHHHhccCCCCCccCC-CCCCCChHHHHHHHHHHHHhCCCCccC---HHHHHHHHHHcCCCCC-CccC
Q psy18133 19 EFILSCCNFDGGFGSR-PGSESHAGLTYCCVGFLSITGHLHEID---ADKLAWWLAERGDHSS-DNLQ 81 (177)
Q Consensus 19 ~~I~scq~~dGGF~~~-pg~esh~~~Ty~Al~~L~llg~l~~id---~~~l~~~l~~~Q~~~G-F~gr 81 (177)
+=+++.|+.||||+.. ...+++.+.|-.++-+|....+.-.|| .++.++||.++|++|| |...
T Consensus 4 qr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~ 71 (246)
T PF07678_consen 4 QRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEED 71 (246)
T ss_dssp HHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--S
T ss_pred HHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccC
Confidence 3467889999999998 778999999999999999988765555 4689999999999999 9643
No 49
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=97.08 E-value=0.0076 Score=50.35 Aligned_cols=128 Identities=16% Similarity=0.031 Sum_probs=75.4
Q ss_pred hhcHHHHHHHHHhccCCCCCccCC---------CCCCCChHHHHHHHHHHHHhCCCC-ccCHHHHHHHHHHcCCCCCCcc
Q psy18133 11 AINLSKAVEFILSCCNFDGGFGSR---------PGSESHAGLTYCCVGFLSITGHLH-EIDADKLAWWLAERGDHSSDNL 80 (177)
Q Consensus 11 ~~~~~~~~~~I~scq~~dGGF~~~---------pg~esh~~~Ty~Al~~L~llg~l~-~id~~~l~~~l~~~Q~~~GF~g 80 (177)
..-.++.++||.+.|++||||+.. .+.+++...|-.++.+|...|... ...+++.++||.+.+.+-
T Consensus 101 ~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~~---- 176 (292)
T cd02897 101 ENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDSI---- 176 (292)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhcccC----
Confidence 345678999999999999999853 123455677888888888877532 223578999999877641
Q ss_pred CCCcc-hHHHHHHHhhhCCcccCCccchhh--hcccCCCCCCccC-----------CCCCCCCHHHHHHHHHHHHhcC
Q psy18133 81 QPSQL-SWYNFVRAHFEGDFFSGRFCNRAS--LVSLDVESGGISD-----------RPLDIPDPFHTLFGVAALTMLD 144 (177)
Q Consensus 81 r~~k~-ty~a~a~l~lL~~~~~~~~~d~~~--l~cq~~d~GGF~~-----------~p~~~~d~~~T~~alasL~ll~ 144 (177)
...| +..+..+|++.+.......++.-. ...++.. |+++. ..+..++..-|-|+|.+|.-.+
T Consensus 177 -~~~y~~al~a~AL~~~~~~~~~~~~~~l~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~ 252 (292)
T cd02897 177 -SDPYTLALAAYALTLAGSEKRPEALKKLDELAISEDGT-KHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAG 252 (292)
T ss_pred -CCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhccCCC-CCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcC
Confidence 0113 223455666666221000111100 1223322 44332 1234568899999998887665
No 50
>KOG0497|consensus
Probab=96.88 E-value=0.0044 Score=57.51 Aligned_cols=134 Identities=17% Similarity=0.216 Sum_probs=93.3
Q ss_pred hhcHHH---HHHHHHhccCCCCCccCC-------------CC--------CCCChHHHHHHHHHHHHhCCCCc------c
Q psy18133 11 AINLSK---AVEFILSCCNFDGGFGSR-------------PG--------SESHAGLTYCCVGFLSITGHLHE------I 60 (177)
Q Consensus 11 ~~~~~~---~~~~I~scq~~dGGF~~~-------------pg--------~esh~~~Ty~Al~~L~llg~l~~------i 60 (177)
.+|+++ .|+.++..|..+|||..- |. .+.-+-.|-.+|.+|....+.-. |
T Consensus 508 ~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei 587 (760)
T KOG0497|consen 508 KIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEI 587 (760)
T ss_pred CCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHH
Confidence 356665 566788999999999753 11 12344567788888888776421 2
Q ss_pred C--HHHHHHHHHHcCCCCC-CccCCCc----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCC---
Q psy18133 61 D--ADKLAWWLAERGDHSS-DNLQPSQ----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPL--- 125 (177)
Q Consensus 61 d--~~~l~~~l~~~Q~~~G-F~gr~~k----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~--- 125 (177)
. .++.++||.+.|.+|| .-|..+- .|+-++..+...|+..+. -.-.++ ++-|+.+ ||.+..+.
T Consensus 588 ~~~i~~av~~ie~~Q~~DGSWyGsWgvCFtY~t~Fa~~gl~aaGkty~n-c~~irka~~Fll~~Q~~~-GGWgEs~lscp 665 (760)
T KOG0497|consen 588 EKSIEKAVEFIEKLQLPDGSWYGSWGVCFTYGTWFALRGLAAAGKTYEN-CEAIRKACDFLLSKQNPD-GGWGESYLSCP 665 (760)
T ss_pred HHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHhcchhhhcchhhhc-cHHHHHHHHHHHhhhccc-CCCccccccCc
Confidence 2 4678999999999999 8777664 455677777777765431 111111 6788888 99988443
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCC
Q psy18133 126 ---------DIPDPFHTLFGVAALTMLDPP 146 (177)
Q Consensus 126 ---------~~~d~~~T~~alasL~ll~~~ 146 (177)
..++.-.|.+|+.+|-+.+.+
T Consensus 666 ~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~ 695 (760)
T KOG0497|consen 666 EKRYIPLEGNKSNVVQTAWALMALIMAGQA 695 (760)
T ss_pred cccccccccccccchhHHHHHHHHHhcCCc
Confidence 467889999999999998873
No 51
>KOG0497|consensus
Probab=96.84 E-value=0.0039 Score=57.89 Aligned_cols=68 Identities=25% Similarity=0.233 Sum_probs=58.9
Q ss_pred hcHHHHHHHHHhccCCCCCccCCC------------CCCCChHHHHHHHHHHHHhCCCCcc--CHHHHHHHHHHcCCCCC
Q psy18133 12 INLSKAVEFILSCCNFDGGFGSRP------------GSESHAGLTYCCVGFLSITGHLHEI--DADKLAWWLAERGDHSS 77 (177)
Q Consensus 12 ~~~~~~~~~I~scq~~dGGF~~~p------------g~esh~~~Ty~Al~~L~llg~l~~i--d~~~l~~~l~~~Q~~~G 77 (177)
.-..+.++|+.+-|++|||.|..+ |..+++..|..|+.+|.+.|..++. ...+.++.|..+|.++|
T Consensus 638 ~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nG 717 (760)
T KOG0497|consen 638 EAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENG 717 (760)
T ss_pred HHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccC
Confidence 346789999999999999999753 4578999999999999999976544 78999999999999999
Q ss_pred -Cc
Q psy18133 78 -DN 79 (177)
Q Consensus 78 -F~ 79 (177)
|.
T Consensus 718 dfp 720 (760)
T KOG0497|consen 718 DFP 720 (760)
T ss_pred Ccc
Confidence 84
No 52
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=96.50 E-value=0.0063 Score=51.27 Aligned_cols=66 Identities=21% Similarity=0.075 Sum_probs=50.7
Q ss_pred cHHHHHHHHHhccCCCCCccCC-----------CCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-Ccc
Q psy18133 13 NLSKAVEFILSCCNFDGGFGSR-----------PGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DNL 80 (177)
Q Consensus 13 ~~~~~~~~I~scq~~dGGF~~~-----------pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~g 80 (177)
..++..+++.++++.|||.+.. ++....+-.|-+||.++.-.+.. ....++++||.+.|+..| |..
T Consensus 206 ~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~~--~~a~~iv~WL~~qr~~~Ggf~s 283 (297)
T cd02896 206 LSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGDI--EYANPIARWLTEQRNYGGGFGS 283 (297)
T ss_pred hhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCCc--hhHHHHHHHHHhcCCCCCCeeh
Confidence 4678899999999999987631 11223677888888887777743 357789999999999988 864
No 53
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=93.57 E-value=0.22 Score=40.84 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=54.9
Q ss_pred cHHHHHHHHHhccCCCCCccCCCC---------CCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCCCccCCC
Q psy18133 13 NLSKAVEFILSCCNFDGGFGSRPG---------SESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSSDNLQPS 83 (177)
Q Consensus 13 ~~~~~~~~I~scq~~dGGF~~~pg---------~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~GF~gr~~ 83 (177)
-.++.++|+.+.|++||+|..... ..+....|.+++.+|...|.......++.++||.+..... ..
T Consensus 102 ~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~~-----~~ 176 (282)
T cd02891 102 VLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDGL-----LD 176 (282)
T ss_pred HHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhcccC-----CC
Confidence 378889999999999999976432 2345567888888888877644345678999999877531 01
Q ss_pred cch-HHHHHHHhhhCC
Q psy18133 84 QLS-WYNFVRAHFEGD 98 (177)
Q Consensus 84 k~t-y~a~a~l~lL~~ 98 (177)
.|. .....++.+.|.
T Consensus 177 ~~~~a~la~al~~~g~ 192 (282)
T cd02891 177 PYALAILAYALALAGD 192 (282)
T ss_pred hHHHHHHHHHHHHcCc
Confidence 132 234556666664
No 54
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=93.13 E-value=0.075 Score=48.28 Aligned_cols=122 Identities=16% Similarity=0.057 Sum_probs=71.1
Q ss_pred hcHHHHHHHHHhccCCCCCccCCCCCCCCh-------------------HHHHHHHHHHHHhCC-CC---ccCHHHHHHH
Q psy18133 12 INLSKAVEFILSCCNFDGGFGSRPGSESHA-------------------GLTYCCVGFLSITGH-LH---EIDADKLAWW 68 (177)
Q Consensus 12 ~~~~~~~~~I~scq~~dGGF~~~pg~esh~-------------------~~Ty~Al~~L~llg~-l~---~id~~~l~~~ 68 (177)
.+.+..++||...|+..|||...+-.--|. .-|-..+..|.-++. ++ ..+.++.++|
T Consensus 281 ~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~ 360 (517)
T COG1657 281 PNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEW 360 (517)
T ss_pred hhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhh
Confidence 456668999999999999998643211111 111111222222222 12 3456789999
Q ss_pred HHHcCCCCC-CccCCCc-chHHHHHHHhhhCCcccCC---ccchhh----hcccCCCCCCccCCCCCCCCHHHHH
Q psy18133 69 LAERGDHSS-DNLQPSQ-LSWYNFVRAHFEGDFFSGR---FCNRAS----LVSLDVESGGISDRPLDIPDPFHTL 134 (177)
Q Consensus 69 l~~~Q~~~G-F~gr~~k-~ty~a~a~l~lL~~~~~~~---~~d~~~----l~cq~~d~GGF~~~p~~~~d~~~T~ 134 (177)
|.+.|.++| .-|+... |+|=...+++.+....+.+ ..-++. .+||..+ ||++..-...++..+++
T Consensus 361 LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~-~Gw~e~~~~~~~~~~~~ 434 (517)
T COG1657 361 LLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPD-GGWGEAKEAISDPVYTG 434 (517)
T ss_pred hhhhccccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccC-CCccccccccccccccc
Confidence 999999999 7777665 6665544444444332112 111222 5799988 99999666555554443
No 55
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=88.90 E-value=0.4 Score=40.66 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=39.0
Q ss_pred HHHHHHHHHhccCCCCCccCCCC--CCCChHHHHH---HHHHHHHhCCC-------Ccc----------CHHHHHHHHHH
Q psy18133 14 LSKAVEFILSCCNFDGGFGSRPG--SESHAGLTYC---CVGFLSITGHL-------HEI----------DADKLAWWLAE 71 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~pg--~esh~~~Ty~---Al~~L~llg~l-------~~i----------d~~~l~~~l~~ 71 (177)
.++.++||++.|+++|||...-- ..-|...||. .+.++.+|... ..+ -.++.++||..
T Consensus 69 ~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILk 148 (290)
T TIGR02474 69 ARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILK 148 (290)
T ss_pred HHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999986521 1111112221 23444444211 111 24689999999
Q ss_pred cCCCCC
Q psy18133 72 RGDHSS 77 (177)
Q Consensus 72 ~Q~~~G 77 (177)
.|-.+|
T Consensus 149 tQ~~~g 154 (290)
T TIGR02474 149 TQVVQN 154 (290)
T ss_pred hhcccC
Confidence 998765
No 56
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=82.95 E-value=2.3 Score=34.79 Aligned_cols=70 Identities=20% Similarity=0.206 Sum_probs=45.8
Q ss_pred ChhcHHHHHHHHHhccCCCCCccCCC--------------CCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCC
Q psy18133 10 DAINLSKAVEFILSCCNFDGGFGSRP--------------GSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDH 75 (177)
Q Consensus 10 ~~~~~~~~~~~I~scq~~dGGF~~~p--------------g~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~ 75 (177)
+..+.+++.+-+.+....+||..--+ +....+-.|-+|+.++.-.+ +..+...+++||.+.|+.
T Consensus 147 ~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~--~~~~~~~iv~WL~~qr~~ 224 (246)
T PF07678_consen 147 DSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRG--DLEEASPIVRWLISQRNS 224 (246)
T ss_dssp TCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCTTT
T ss_pred ccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhcCC
Confidence 34567788888888877666652111 11123567777775555553 344567899999999999
Q ss_pred CC-CccC
Q psy18133 76 SS-DNLQ 81 (177)
Q Consensus 76 ~G-F~gr 81 (177)
.| |...
T Consensus 225 ~Ggf~ST 231 (246)
T PF07678_consen 225 GGGFGST 231 (246)
T ss_dssp TSSTSSH
T ss_pred CCccCcH
Confidence 88 8653
No 57
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=80.67 E-value=2.7 Score=36.25 Aligned_cols=91 Identities=16% Similarity=-0.007 Sum_probs=51.9
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCc---cCHHHHHHHHHHcCCCCC-CccCCCcchHHH
Q psy18133 14 LSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHE---IDADKLAWWLAERGDHSS-DNLQPSQLSWYN 89 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~---id~~~l~~~l~~~Q~~~G-F~gr~~k~ty~a 89 (177)
.+++++.|.+.|.+||-||+. .+|=-|+++|...+.... -+..+..+++..-. ++| |+.-- -+
T Consensus 217 i~~~~~kIl~~q~~~G~~GNi-------ySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~nP~-----a~ 283 (326)
T PF01122_consen 217 IRSLVEKILSQQKPNGLFGNI-------YSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQNPM-----AI 283 (326)
T ss_dssp HHHHHHHHHHTB-TTS-BSST-------TTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-SHH-----HH
T ss_pred HHHHHHHHHHhcCCCCcccch-------hhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCCCHH-----HH
Confidence 567888999999999999953 467778888777765211 24567888887643 478 86531 12
Q ss_pred HHHHhhhCCcccCCccchhhhcccCCCCCCcc
Q psy18133 90 FVRAHFEGDFFSGRFCNRASLVSLDVESGGIS 121 (177)
Q Consensus 90 ~a~l~lL~~~~~~~~~d~~~l~cq~~d~GGF~ 121 (177)
.-+|-.|... .+.|.....|+..+ |-+.
T Consensus 284 aQiLPaL~gK---TYLDv~~~~C~~~~-~~~~ 311 (326)
T PF01122_consen 284 AQILPALNGK---TYLDVNSVDCSSPD-GNLN 311 (326)
T ss_dssp HHHHHHHTT-----GGGGGS--SSS---EE--
T ss_pred HHHHHHHcCC---CccccCCCCCCCCC-Cccc
Confidence 3334333333 57777778899877 7665
No 58
>PLN02592 ent-copalyl diphosphate synthase
Probab=77.68 E-value=5.6 Score=38.37 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=34.7
Q ss_pred HHHHHHHHhccCCCCCccCCCCCCC--ChHHHHHHHHHHHHhCCCCccCHHHHHHHHH
Q psy18133 15 SKAVEFILSCCNFDGGFGSRPGSES--HAGLTYCCVGFLSITGHLHEIDADKLAWWLA 70 (177)
Q Consensus 15 ~~~~~~I~scq~~dGGF~~~pg~es--h~~~Ty~Al~~L~llg~l~~id~~~l~~~l~ 70 (177)
.++++||++-|.+|||.|..+.... -+-+|-+||.+|.--+. ..-..++-++||.
T Consensus 118 P~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~rGl~fi~ 174 (800)
T PLN02592 118 PSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNL-HPEKCEKGMSFFR 174 (800)
T ss_pred HHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhc-cHHHHHHHHHHHH
Confidence 3799999999999999988543222 25677777766654322 1111244555555
No 59
>PLN02592 ent-copalyl diphosphate synthase
Probab=77.50 E-value=17 Score=35.21 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=71.0
Q ss_pred cCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCC-C--CccCC
Q psy18133 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHS-S--DNLQP 82 (177)
Q Consensus 6 L~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~-G--F~gr~ 82 (177)
|+.+..+|-++ +...|..||+|..+|. +|.+++.- . - .+++.+||.+..... | =+..|
T Consensus 247 lEgl~~~dw~~----v~~~q~~~GS~~~SPS------aTAaaL~~-----~---~-d~~cl~YL~~~~~k~~GgVP~vyP 307 (800)
T PLN02592 247 LEGMPGLDWEK----LLKLQCQDGSFLFSPS------STAFALMQ-----T---K-DENCLEYLNKAVQRFNGGVPNVYP 307 (800)
T ss_pred HhccccCCHHH----HhcccCCCCCccCCch------HHHHHHhc-----c---C-chHHHHHHHHHHHHcCCCCCCCCC
Confidence 34443345554 4566778999999987 55555421 1 1 267889998776553 2 23334
Q ss_pred Cc--chHHHHHHHhhhCCcccCCccchhh---h----cccCCCCCCccCCC-CCCCCHHHHHHHHHHHHhcCCC
Q psy18133 83 SQ--LSWYNFVRAHFEGDFFSGRFCNRAS---L----VSLDVESGGISDRP-LDIPDPFHTLFGVAALTMLDPP 146 (177)
Q Consensus 83 ~k--~ty~a~a~l~lL~~~~~~~~~d~~~---l----~cq~~d~GGF~~~p-~~~~d~~~T~~alasL~ll~~~ 146 (177)
-. -.-|.+.+|.-||... .+..+. + ++.... | .+..+ ...+|.+.|-.+.-.|...|.+
T Consensus 308 ~d~fE~LwlVDtLqRLGIs~---hF~~EI~~iLd~iy~~w~~~-g-~~~a~~~~~~Dld~TALaFRLLRqhGy~ 376 (800)
T PLN02592 308 VDLFEHIWAVDRLQRLGISR---YFEPEIKECIDYVHRYWTEN-G-ICWARNSHVHDIDDTAMGFRLLRLHGHQ 376 (800)
T ss_pred CcHHHHHHHHHHHHHcCCcc---ccHHHHHHHHHHHHHHHhhc-C-cccccCCCcCCHHHHHHHHHHHHHcCCC
Confidence 33 3458899999998763 222221 1 333222 3 22222 2367999999999999999873
No 60
>PLN02279 ent-kaur-16-ene synthase
Probab=75.83 E-value=6.9 Score=37.68 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=30.9
Q ss_pred HHHHHHHHhccCCCCCccCCCCCC----CChHHHHHHHHHHHHhC
Q psy18133 15 SKAVEFILSCCNFDGGFGSRPGSE----SHAGLTYCCVGFLSITG 55 (177)
Q Consensus 15 ~~~~~~I~scq~~dGGF~~~pg~e----sh~~~Ty~Al~~L~llg 55 (177)
.++++||++-|.+||+.|..+... --+-+|-+||.+|.--+
T Consensus 76 p~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~ 120 (784)
T PLN02279 76 PECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWG 120 (784)
T ss_pred hHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHh
Confidence 579999999999999998653322 22578888888877654
No 61
>KOG1366|consensus
Probab=72.97 E-value=8.4 Score=39.53 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=51.8
Q ss_pred CCCChhcHHHHHHHHH-------hccCCCCCccCCC--CCCCChHHHHHHHHHHHHhCCCCccC---HHHHHHHHHHcCC
Q psy18133 7 GKLDAINLSKAVEFIL-------SCCNFDGGFGSRP--GSESHAGLTYCCVGFLSITGHLHEID---ADKLAWWLAERGD 74 (177)
Q Consensus 7 ~~l~~~~~~~~~~~I~-------scq~~dGGF~~~p--g~esh~~~Ty~Al~~L~llg~l~~id---~~~l~~~l~~~Q~ 74 (177)
+.|+..-.+++..||. ..+++||.|+..- ...+..+.|-..+-++..-...=.|| ..+.+.|+.++|.
T Consensus 959 ~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk 1038 (1436)
T KOG1366|consen 959 NQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQK 1038 (1436)
T ss_pred hccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhc
Confidence 4556666677777665 3457899998543 35667788888887777665433344 5689999999999
Q ss_pred CCC-Cc
Q psy18133 75 HSS-DN 79 (177)
Q Consensus 75 ~~G-F~ 79 (177)
++| |.
T Consensus 1039 ~~GsF~ 1044 (1436)
T KOG1366|consen 1039 ENGSFK 1044 (1436)
T ss_pred cCceEe
Confidence 999 85
No 62
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=65.62 E-value=5.6 Score=36.44 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=41.6
Q ss_pred HHHHHHHHHhccCCCCCccCCC---------CCCCC-hHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC
Q psy18133 14 LSKAVEFILSCCNFDGGFGSRP---------GSESH-AGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS 77 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~p---------g~esh-~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G 77 (177)
+.+++.|+.+||++|||++..- +.++| .-.|-+|+..+..-.....--.+.-++++.+.|.++|
T Consensus 403 v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g 476 (517)
T COG1657 403 VRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDG 476 (517)
T ss_pred HHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCC
Confidence 6789999999999999999752 22333 3344455444333322221124567889999999988
No 63
>PLN02279 ent-kaur-16-ene synthase
Probab=46.76 E-value=93 Score=30.17 Aligned_cols=102 Identities=10% Similarity=-0.041 Sum_probs=65.4
Q ss_pred HHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC---CccCCCc--chHHHHHHHhh
Q psy18133 21 ILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS---DNLQPSQ--LSWYNFVRAHF 95 (177)
Q Consensus 21 I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G---F~gr~~k--~ty~a~a~l~l 95 (177)
|...|..||.|..+|. +|.+++. . .-| +++.+||.+.+...| =+..|-. -.-|.+.+|.-
T Consensus 218 v~~~q~~~Gs~~~SPs------aTAa~l~-----~---~~~-~~~~~yL~~~~~~~~g~vP~~yp~~~fe~l~lvd~L~r 282 (784)
T PLN02279 218 VMKYQRKNGSLFNSPS------TTAAAFS-----H---LQN-AGCLRYLRSLLQKFGNAVPTVYPLDQYARLSMVDTLER 282 (784)
T ss_pred HHhhcCCCCCcccCcH------HHHHHHH-----c---cCC-hHHHHHHHHHHHhcCCCCCCCCcccHHHHhHHHHHHHH
Confidence 4567888999999986 5555542 1 113 678899988777643 1223323 45589999999
Q ss_pred hCCcccCCccchhh---h----cccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCCC
Q psy18133 96 EGDFFSGRFCNRAS---L----VSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPP 146 (177)
Q Consensus 96 L~~~~~~~~~d~~~---l----~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~~ 146 (177)
||... .+..+. + ++.. + | .++...|.+.|-.+.--|...|.+
T Consensus 283 lGi~~---hF~~EI~~~L~~~~~~~~-~-~----~~~~~~Dl~~tAl~FRLLR~hGy~ 331 (784)
T PLN02279 283 LGIDR---HFRKEIKSVLDETYRYWL-Q-G----EEEIFLDLATCALAFRILRLNGYD 331 (784)
T ss_pred hCCcc---ccHHHHHHHHHHHHHhhc-c-c----ccCCCCCHHHHHHHHHHHHHcCCC
Confidence 98763 222221 1 2222 1 2 244567999999999999998873
No 64
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=32.17 E-value=4e+02 Score=25.24 Aligned_cols=109 Identities=17% Similarity=0.091 Sum_probs=68.5
Q ss_pred CCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCCCccCCCcchH
Q psy18133 8 KLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSSDNLQPSQLSW 87 (177)
Q Consensus 8 ~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~GF~gr~~k~ty 87 (177)
-++..|++++.+.+.+- ...+++..+|+|+..|..||. +..|.+.+.+++++.-.+. --+-+-.|
T Consensus 27 ~ls~~D~~rl~~vf~~~-----------~~~~dLes~yyav~glk~Lg~-~~~~~~~~C~~~~~~~~~s---~~~~e~lf 91 (636)
T PF05817_consen 27 YLSAADQSRLQSVFEDG-----------LPSSDLESAYYAVLGLKLLGI-KVPDSKAACKFLKKALDES---SNDLESLF 91 (636)
T ss_pred cCCHHHHHHHHHHHHhc-----------CCcccHHHHHHHHhhHHHhCC-CCCChhhHHHHHHHhhccc---cchHHHHH
Confidence 35556777777666421 345668899999999999986 4456778888888765431 00012788
Q ss_pred HHHHHHhhhCCcccCCccchhh---h-cccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 88 YNFVRAHFEGDFFSGRFCNRAS---L-VSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 88 ~a~a~l~lL~~~~~~~~~d~~~---l-~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
|++.+...|+-.. -+..+. + .-- .+.++.-.-||++.+|..+|.
T Consensus 92 ya~~~~~~L~C~~---~~~~~~~~~l~~~l-----------~~~s~~~~iy~av~sl~~lg~ 139 (636)
T PF05817_consen 92 YAASASKALKCKV---SVSNEVKSLLKAAL-----------SEDSSVSQIYYAVSSLKLLGL 139 (636)
T ss_pred HHHHHHhhcCCcc---cCcHHHHHHHHHHh-----------cCCccHHHHHHHHHHHHHcCC
Confidence 9999988887331 111111 1 111 112355558888999988875
No 65
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=25.02 E-value=57 Score=27.73 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=33.1
Q ss_pred HHHHHHHHHhccCCCCCccCC-C---CCCCChHHHH---HHHHHHHHhCC-------CCccC----------HHHHHHHH
Q psy18133 14 LSKAVEFILSCCNFDGGFGSR-P---GSESHAGLTY---CCVGFLSITGH-------LHEID----------ADKLAWWL 69 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~-p---g~esh~~~Ty---~Al~~L~llg~-------l~~id----------~~~l~~~l 69 (177)
.++-++||++-|.++|||.+. | +...|+ || ..+.+|.+|-. ...+| .++.+++|
T Consensus 64 ~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~I--TfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ci 141 (289)
T PF09492_consen 64 FLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHI--TFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCI 141 (289)
T ss_dssp HHHHHHHHHHHS-TTS--BSECS--SGGGGSE--E-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCccCCCCCCCCCce--EEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999875 3 222222 22 23444444421 22222 46788999
Q ss_pred HHcCC
Q psy18133 70 AERGD 74 (177)
Q Consensus 70 ~~~Q~ 74 (177)
...|.
T Consensus 142 L~tQi 146 (289)
T PF09492_consen 142 LKTQI 146 (289)
T ss_dssp HHHS-
T ss_pred HHHHc
Confidence 99988
No 66
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=22.53 E-value=2e+02 Score=26.18 Aligned_cols=46 Identities=17% Similarity=0.082 Sum_probs=27.1
Q ss_pred CCCChHHHHHHHHHHHH-hCCCCcc-CHHHHHHHHHHcCCCCC-CccCC
Q psy18133 37 SESHAGLTYCCVGFLSI-TGHLHEI-DADKLAWWLAERGDHSS-DNLQP 82 (177)
Q Consensus 37 ~esh~~~Ty~Al~~L~l-lg~l~~i-d~~~l~~~l~~~Q~~~G-F~gr~ 82 (177)
..++.+.-.-|++-+.. .++.... ..++++++|..+|.+|| ++..+
T Consensus 58 ~~~~~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~ 106 (520)
T PF07944_consen 58 RGHDVGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQQPDGYLGTYP 106 (520)
T ss_pred CCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccCCceecccc
Confidence 34555555555443333 3332111 25789999999999999 55433
No 67
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=22.40 E-value=2.6e+02 Score=23.83 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=36.0
Q ss_pred HHHHHHHHHhccCCCCCc----cCC-------C----CCCCChHHHHHHHHHHHHhCCCCcc------CHHHHHHHHHHc
Q psy18133 14 LSKAVEFILSCCNFDGGF----GSR-------P----GSESHAGLTYCCVGFLSITGHLHEI------DADKLAWWLAER 72 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF----~~~-------p----g~esh~~~Ty~Al~~L~llg~l~~i------d~~~l~~~l~~~ 72 (177)
.++.++||+++|-.+||- +.. | ..|+-.-++.-.+.++.+|-.+... -++..++|+.+.
T Consensus 139 i~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~ 218 (290)
T TIGR02474 139 VTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTS 218 (290)
T ss_pred HHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHC
Confidence 567899999999887754 322 1 0122222223334445555443322 257789999988
Q ss_pred CCC
Q psy18133 73 GDH 75 (177)
Q Consensus 73 Q~~ 75 (177)
+-+
T Consensus 219 ~i~ 221 (290)
T TIGR02474 219 RIR 221 (290)
T ss_pred CCC
Confidence 865
No 68
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=20.81 E-value=1.2e+02 Score=31.85 Aligned_cols=43 Identities=30% Similarity=0.350 Sum_probs=35.4
Q ss_pred cHHHHHHHHHhccCCCCCccCCCC-CCCChHHHHHHHHHHHHhC
Q psy18133 13 NLSKAVEFILSCCNFDGGFGSRPG-SESHAGLTYCCVGFLSITG 55 (177)
Q Consensus 13 ~~~~~~~~I~scq~~dGGF~~~pg-~esh~~~Ty~Al~~L~llg 55 (177)
-.+.++.=+.+.|..+|+|+..++ .+++...|-+++-.|.--.
T Consensus 1200 ~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A~ 1243 (1621)
T COG2373 1200 RLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRAR 1243 (1621)
T ss_pred HHHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhhh
Confidence 356778888899999999997766 8899999999987776653
No 69
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=20.02 E-value=6.4e+02 Score=23.40 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHHhCCCCcc-----------CHHHHHHHHHHcCCCCC-Ccc
Q psy18133 39 SHAGLTYCCVGFLSITGHLHEI-----------DADKLAWWLAERGDHSS-DNL 80 (177)
Q Consensus 39 sh~~~Ty~Al~~L~llg~l~~i-----------d~~~l~~~l~~~Q~~~G-F~g 80 (177)
+=+..|++....+..+++...- ...++++|+....++.| |..
T Consensus 531 ~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~~~~~Gll~E 584 (616)
T TIGR01577 531 PWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDHRTDLGLLPE 584 (616)
T ss_pred cHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 3456788888888888865311 24579999999999988 753
Done!