Query psy18133
Match_columns 177
No_of_seqs 154 out of 1105
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 23:29:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dss_B Geranylgeranyl transfer 100.0 1.1E-45 3.8E-50 313.9 17.5 168 2-174 152-330 (331)
2 3dra_B Geranylgeranyltransfera 100.0 1.3E-45 4.5E-50 318.6 11.2 166 2-169 168-386 (390)
3 1n4q_B Geranyltransferase type 100.0 2.1E-44 7.2E-49 310.6 13.5 162 2-169 181-356 (377)
4 2h6f_B Protein farnesyltransfe 100.0 6E-41 2E-45 293.8 10.4 173 2-175 210-419 (437)
5 3q7a_B Farnesyltransferase bet 100.0 5.8E-40 2E-44 290.5 9.8 170 2-171 205-515 (520)
6 3dss_B Geranylgeranyl transfer 100.0 9E-34 3.1E-38 240.7 14.8 140 2-145 56-206 (331)
7 3q7a_B Farnesyltransferase bet 100.0 4.7E-32 1.6E-36 240.0 10.0 140 2-145 98-282 (520)
8 3dra_B Geranylgeranyltransfera 100.0 7.6E-31 2.6E-35 226.5 12.1 143 2-145 41-235 (390)
9 1n4q_B Geranyltransferase type 100.0 1.2E-29 4.3E-34 218.5 13.1 140 2-145 57-235 (377)
10 2h6f_B Protein farnesyltransfe 100.0 1.6E-29 5.4E-34 221.5 9.6 141 2-145 159-313 (437)
11 2sqc_A Squalene-hopene cyclase 99.4 7.4E-13 2.5E-17 120.4 12.8 132 13-145 399-568 (631)
12 1w6k_A Lanosterol synthase; cy 99.3 4.8E-12 1.6E-16 116.9 12.1 134 11-145 480-664 (732)
13 2sqc_A Squalene-hopene cyclase 99.2 1.5E-10 5.2E-15 105.2 11.3 129 12-143 466-624 (631)
14 1w6k_A Lanosterol synthase; cy 98.9 5.9E-09 2E-13 96.3 11.2 128 13-143 559-719 (732)
15 1qqf_A Protein (complement C3D 98.9 1.6E-08 5.5E-13 82.7 11.0 65 18-82 44-113 (277)
16 2wy7_A Complement C3D fragment 98.8 3.2E-08 1.1E-12 82.2 10.7 67 16-82 58-129 (310)
17 2pn5_A TEP1R, thioester-contai 98.1 1.3E-05 4.5E-10 78.0 10.9 64 18-81 878-946 (1325)
18 1hzf_A Complement factor C4A; 98.0 1.1E-05 3.6E-10 68.6 7.6 68 14-81 93-164 (367)
19 1qqf_A Protein (complement C3D 97.9 4.7E-05 1.6E-09 61.9 9.3 118 13-141 90-271 (277)
20 2wy7_A Complement C3D fragment 97.7 0.00022 7.7E-09 58.9 9.7 121 13-144 106-290 (310)
21 4acq_A Alpha-2-macroglobulin; 97.3 0.00076 2.6E-08 66.5 9.6 84 15-98 986-1091(1451)
22 2hr0_B Complement C3 alpha' ch 97.1 0.0011 3.7E-08 62.5 7.8 66 16-81 303-373 (915)
23 4fxk_B Complement C4-A alpha c 96.8 0.0028 9.5E-08 58.4 7.9 62 18-79 374-439 (767)
24 2bb6_A TCII, TC II, transcobal 96.8 0.0013 4.5E-08 56.9 5.2 85 16-116 210-298 (414)
25 2pmv_A Gastric intrinsic facto 96.1 0.026 8.8E-07 48.6 9.1 91 14-121 185-278 (399)
26 2b39_A C3; thioester, immune d 95.9 0.023 7.7E-07 56.7 8.7 59 21-79 1055-1118(1661)
27 3cu7_A Complement C5; Mg domai 95.8 0.018 6.2E-07 57.4 7.6 67 13-79 1041-1119(1676)
28 2hr0_B Complement C3 alpha' ch 95.1 0.088 3E-06 49.5 9.5 63 12-74 350-433 (915)
29 3prx_B Cobra venom factor; imm 95.1 0.0039 1.3E-07 62.2 0.0 66 14-79 1025-1103(1642)
30 1hzf_A Complement factor C4A; 94.7 0.076 2.6E-06 44.7 7.2 79 62-144 93-197 (367)
31 2bb6_A TCII, TC II, transcobal 94.3 0.057 2E-06 46.6 5.5 111 15-141 155-282 (414)
32 1gxm_A Pectate lyase; mechanis 89.8 0.11 3.9E-06 43.5 1.6 70 14-83 99-193 (332)
33 2pn5_A TEP1R, thioester-contai 89.8 1.6 5.4E-05 42.5 9.9 75 63-141 875-973 (1325)
34 1r76_A Pectate lyase; A-helica 89.0 0.34 1.2E-05 41.7 4.0 64 14-77 177-263 (408)
35 3s9v_A Abietadiene synthase, c 85.8 1 3.6E-05 41.8 5.6 55 15-70 77-133 (785)
36 3p5p_A Taxadiene synthase; cla 85.8 1.1 3.7E-05 41.6 5.7 57 14-71 55-113 (764)
37 3sdr_A Alpha-bisabolene syntha 85.3 1.2 4.1E-05 41.6 5.7 56 15-71 104-161 (817)
38 3pya_A ENT-copalyl diphosphate 85.1 1.2 4.1E-05 41.0 5.6 57 14-71 52-110 (727)
39 2pmv_A Gastric intrinsic facto 81.0 5.4 0.00018 34.2 7.7 108 14-141 132-258 (399)
40 4acq_A Alpha-2-macroglobulin; 77.9 6.9 0.00024 38.7 8.3 79 63-145 986-1091(1451)
41 1gxm_A Pectate lyase; mechanis 77.5 1 3.6E-05 37.7 2.1 65 16-80 35-118 (332)
42 1r76_A Pectate lyase; A-helica 72.7 2.9 0.0001 35.9 3.7 66 14-79 247-334 (408)
43 4fxk_B Complement C4-A alpha c 61.7 7.8 0.00027 35.3 4.5 35 110-145 378-412 (767)
44 3s9v_A Abietadiene synthase, c 56.9 47 0.0016 30.8 8.8 120 3-146 203-336 (785)
45 3p5p_A Taxadiene synthase; cla 50.9 30 0.001 32.0 6.4 106 21-146 194-312 (764)
46 3pya_A ENT-copalyl diphosphate 50.8 87 0.003 28.7 9.5 120 3-146 179-311 (727)
47 3cu7_A Complement C5; Mg domai 44.2 30 0.001 34.6 5.7 68 14-83 1205-1289(1676)
48 3sdr_A Alpha-bisabolene syntha 43.7 20 0.00068 33.4 4.1 61 13-80 55-122 (817)
49 2b39_A C3; thioester, immune d 43.2 34 0.0012 34.1 5.9 35 110-145 1056-1090(1661)
50 3prx_B Cobra venom factor; imm 27.0 13 0.00046 37.2 0.0 63 10-72 1080-1162(1642)
51 3pmm_A Putative cytoplasmic pr 24.2 1.5E+02 0.0051 24.6 6.0 66 14-79 265-340 (382)
52 4ae4_A Ubiquitin-associated pr 23.1 49 0.0017 23.1 2.4 61 13-73 35-115 (118)
53 1c6r_A Cytochrome C6; electron 21.3 38 0.0013 21.0 1.4 19 8-26 67-85 (89)
No 1
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=1.1e-45 Score=313.93 Aligned_cols=168 Identities=50% Similarity=0.984 Sum_probs=160.2
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-Ccc
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DNL 80 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~g 80 (177)
+|.+|+.++.++++++++||++||++||||++.|+.|||+++||||+++|.+++.++.+|.+++++||.++|+++| |+|
T Consensus 152 ~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~g 231 (331)
T 3dss_B 152 TLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNG 231 (331)
T ss_dssp HHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCS
T ss_pred HHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCC
Confidence 4678888888999999999999999999999999999999999999999999999989999999999999999999 999
Q ss_pred CCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCCCCCCC
Q psy18133 81 QPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDV 150 (177)
Q Consensus 81 r~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~~~~~l 150 (177)
|++| ||||++++|++||+. +++|.++ ++||+.+.|||+++|+++||.+||||||++|+++++ ++|
T Consensus 232 r~~k~~D~cys~w~l~~L~llg~~---~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~--~~l 306 (331)
T 3dss_B 232 RPEKLPDVCYSWWVLASLKIIGRL---HWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGE--EQI 306 (331)
T ss_dssp STTCCCCHHHHHHHHHHHHHTTCG---GGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTC--TTS
T ss_pred CCCCCCcchhHHHHHHHHHHcCCc---chhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCC--CCC
Confidence 9997 999999999999987 7888876 789998779999999999999999999999999999 889
Q ss_pred CcCCccccCCHHHHHHhhcCCCCC
Q psy18133 151 LPVDPTYCMPRYVIERLNLNPQRL 174 (177)
Q Consensus 151 ~~~~p~~~i~~~~~~~~~~~~~~~ 174 (177)
++|||+||||+++++|+++.++.|
T Consensus 307 ~~~~p~~~~~~~~~~~~~~~~~~~ 330 (331)
T 3dss_B 307 KPVSPVFCMPEEVLQRVNVQPELV 330 (331)
T ss_dssp CCBCTTTSSBHHHHHHHTCCCCCC
T ss_pred CCCCccccCCHHHHHHhCCChhhc
Confidence 999999999999999999998876
No 2
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=1.3e-45 Score=318.59 Aligned_cols=166 Identities=22% Similarity=0.342 Sum_probs=148.3
Q ss_pred cccccCCCC-------------hhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHH
Q psy18133 2 VQHPIGKLD-------------AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWW 68 (177)
Q Consensus 2 ~l~lL~~l~-------------~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~ 68 (177)
+++||+.++ .+|++++++||.+||++||||+..|+.|||+++|||||++|++|+++ .+|++++++|
T Consensus 168 i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~W 246 (390)
T 3dra_B 168 IRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEW 246 (390)
T ss_dssp HHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHH
T ss_pred HHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-cccHHHHHHH
Confidence 467888777 79999999999999999999999999999999999999999999987 4789999999
Q ss_pred HHHcCC----------------------------CCC-CccCCCc-----chHHHHHHHhhhCCcccCCccchhh-----
Q psy18133 69 LAERGD----------------------------HSS-DNLQPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS----- 109 (177)
Q Consensus 69 l~~~Q~----------------------------~~G-F~gr~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~----- 109 (177)
|.+||. ++| |+||+|| |+||++++|+||+.... +++|+++
T Consensus 247 L~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~~-~l~d~~~l~~yi 325 (390)
T 3dra_B 247 LIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFI-KLVDLNKAEDYL 325 (390)
T ss_dssp HHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGGG-GGSCHHHHHHHH
T ss_pred HHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhccccc-cccCHHHHHHHH
Confidence 999998 357 9999999 99999999999996211 6888886
Q ss_pred hcc-cCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCcCCccccCCHHHHHHhhc
Q psy18133 110 LVS-LDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNL 169 (177)
Q Consensus 110 l~c-q~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~~~~~l~~~~p~~~i~~~~~~~~~~ 169 (177)
++| |+...|||+++|++.||++|||++|++|++++.++++|++|||+||||++++++++.
T Consensus 326 L~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~~~~~~l~~vdp~~~ip~~~~~~~~~ 386 (390)
T 3dra_B 326 LNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNHEKFALQEINPILTITKESYQFFKE 386 (390)
T ss_dssp HHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHHHHHHTCCCEETTTTEEHHHHHHHHH
T ss_pred HHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCCccCCCceeCchhcCCHHHHHHHHH
Confidence 666 565359999999999999999999999999986556899999999999999999974
No 3
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=2.1e-44 Score=310.57 Aligned_cols=162 Identities=23% Similarity=0.482 Sum_probs=150.5
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCcc----CHHHHHHHHHHcCCCCC
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEI----DADKLAWWLAERGDHSS 77 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~i----d~~~l~~~l~~~Q~~~G 77 (177)
++.+|+.++.++++++++||++||++|||||..|+.|||+++||||+++|.+++..+.+ +++++++||.+|| ..|
T Consensus 181 ~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ-~gG 259 (377)
T 1n4q_B 181 ICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ-QNG 259 (377)
T ss_dssp HHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB-SSS
T ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC-CCC
Confidence 46788888889999999999999999999999999999999999999999999987655 7899999999999 334
Q ss_pred CccCCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCCCC
Q psy18133 78 DNLQPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPT 147 (177)
Q Consensus 78 F~gr~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~~~ 147 (177)
|+||||| |+||++++|++|+.. +++|.++ ++||+.+.|||+++|++.||.+||||+|++|++++.
T Consensus 260 f~GR~nK~~D~CYSfWv~~~l~iL~~~---~~~d~~~l~~fil~cQ~~~~GGf~~~p~~~~D~~HT~~~LagLsl~~~-- 334 (377)
T 1n4q_B 260 YHGRPNKPVDTCYSFWVGATLKLLKIF---QYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEE-- 334 (377)
T ss_dssp BCSSTTSCCCTTHHHHHHHHHHHTTCG---GGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTC--
T ss_pred cCCCCCcchhHHHHHHHHHHHHHhCCc---cccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCC--
Confidence 9999998 999999999999988 7899887 689999559999999999999999999999999999
Q ss_pred CCCCcCCccccCCHHHHHHhhc
Q psy18133 148 PDVLPVDPTYCMPRYVIERLNL 169 (177)
Q Consensus 148 ~~l~~~~p~~~i~~~~~~~~~~ 169 (177)
.++++|||+||||++++++++.
T Consensus 335 ~~l~~i~p~~~i~~~~~~~~~~ 356 (377)
T 1n4q_B 335 SGICKVHPALNVSTRTSERLRD 356 (377)
T ss_dssp TTCCCEETTTTEEHHHHHHHHH
T ss_pred CCCCCCCCcccCCHHHHHHHHH
Confidence 7899999999999999999874
No 4
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=6e-41 Score=293.82 Aligned_cols=173 Identities=20% Similarity=0.355 Sum_probs=153.4
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCC-CCC-Cc
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGD-HSS-DN 79 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~-~~G-F~ 79 (177)
+|.+|+.++...++++++||++||++||||+..|+.|||+++|||||++|.++|..+.++++++++||.+||. ++| |+
T Consensus 210 ~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~ 289 (437)
T 2h6f_B 210 VASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQ 289 (437)
T ss_dssp HHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBB
T ss_pred HHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCcc
Confidence 4667788777888999999999999999999999999999999999999999999989999999999999999 678 99
Q ss_pred cCCCc-----chHHHHHHHhhhCCcc----c-----C-Cccchhh-----hc-ccCCCCCCccCCCCCCCCHHHHHHHHH
Q psy18133 80 LQPSQ-----LSWYNFVRAHFEGDFF----S-----G-RFCNRAS-----LV-SLDVESGGISDRPLDIPDPFHTLFGVA 138 (177)
Q Consensus 80 gr~~k-----~ty~a~a~l~lL~~~~----~-----~-~~~d~~~-----l~-cq~~d~GGF~~~p~~~~d~~~T~~ala 138 (177)
||||| ||||++++|++|+... + . .++|+++ ++ ||+.+ |||+++|++.+|.+||||+|+
T Consensus 290 gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~-GGf~d~Pg~~~D~yHT~y~L~ 368 (437)
T 2h6f_B 290 GRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPA-GGLLDKPGKSRDFYHTCYCLS 368 (437)
T ss_dssp SSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTT-SCBCSSTTSCCCHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCCC-CCccCCCCCCCCHHHHHHHHH
Confidence 99998 9999999999998641 0 0 1477776 44 78776 999999999999999999999
Q ss_pred HHHhcCC--------------CCCCCCcCCccccCCHHHHHHhhcCCCCCC
Q psy18133 139 ALTMLDP--------------PTPDVLPVDPTYCMPRYVIERLNLNPQRLP 175 (177)
Q Consensus 139 sL~ll~~--------------~~~~l~~~~p~~~i~~~~~~~~~~~~~~~~ 175 (177)
+|++++. +++.|++|||+||||.+++++++.++..+|
T Consensus 369 gLsl~~~~~~~~~~~~~~~~~~~~~l~~i~p~~~i~~~~~~~~~~~~~~~~ 419 (437)
T 2h6f_B 369 GLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQKP 419 (437)
T ss_dssp HHHHHHEEEETTEEEECCCSSGGGCCCCCCTTTSSCHHHHHHHHHHHHTSC
T ss_pred HHHHhccccccccccccccCCcccCccccCCcccCCHHHHHHHHHHHHhCC
Confidence 9999973 136899999999999999999988876665
No 5
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=5.8e-40 Score=290.50 Aligned_cols=170 Identities=19% Similarity=0.330 Sum_probs=148.2
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccC-----------------------CCCCCCChHHHHHHHHHHHHhCCC-
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGS-----------------------RPGSESHAGLTYCCVGFLSITGHL- 57 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~-----------------------~pg~esh~~~Ty~Al~~L~llg~l- 57 (177)
+|.+|+.++.++++++++||.+||++|||||. .|+.|||+++|||||++|++|+.+
T Consensus 205 ~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~ 284 (520)
T 3q7a_B 205 VATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVP 284 (520)
T ss_dssp HHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHcCCCChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhcccc
Confidence 46788888889999999999999999999999 689999999999999999999987
Q ss_pred -----CccCHHHHHHHHHHcCC---CCC-CccCCCc-----chHHHHHHHhhhCCcc--------------------c--
Q psy18133 58 -----HEIDADKLAWWLAERGD---HSS-DNLQPSQ-----LSWYNFVRAHFEGDFF--------------------S-- 101 (177)
Q Consensus 58 -----~~id~~~l~~~l~~~Q~---~~G-F~gr~~k-----~ty~a~a~l~lL~~~~--------------------~-- 101 (177)
+.+|.+++++||.+||. ++| |+||+|| |+||++++|.||+... .
T Consensus 285 ~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (520)
T 3q7a_B 285 LPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGD 364 (520)
T ss_dssp CTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC---------------
T ss_pred ccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccccccccccccccccccc
Confidence 46899999999999997 346 9999999 9999999999998741 0
Q ss_pred -------CCccchhh-----h-cccCCC--CCCccCCCCCCCCHHHHHHHHHHHHhcCC---------------------
Q psy18133 102 -------GRFCNRAS-----L-VSLDVE--SGGISDRPLDIPDPFHTLFGVAALTMLDP--------------------- 145 (177)
Q Consensus 102 -------~~~~d~~~-----l-~cq~~d--~GGF~~~p~~~~d~~~T~~alasL~ll~~--------------------- 145 (177)
..++|+++ | +||+.. .|||+++|++.||.+||||+|++|++++.
T Consensus 365 w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~~~~~~~~~~~~~~~~~~~~~ 444 (520)
T 3q7a_B 365 WEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMSHSPSTVSSNRLKFDASKG 444 (520)
T ss_dssp ------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSCEEECHHHHHHHHHHCCTTCC
T ss_pred cccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCChhhHHHhhhccccccc
Confidence 12467776 4 699975 59999999999999999999999999843
Q ss_pred ---------------------------------------------CCCCCCcCCccccCCHHHHHHhhcCC
Q psy18133 146 ---------------------------------------------PTPDVLPVDPTYCMPRYVIERLNLNP 171 (177)
Q Consensus 146 ---------------------------------------------~~~~l~~~~p~~~i~~~~~~~~~~~~ 171 (177)
+.+.++++||+|||+...++++..++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~g~~~n~~~~~hp~~ni~~~~~~~~~~~f 515 (520)
T 3q7a_B 445 LPAVKPVAPGGGWKNEDERQNARREIWANALGWIEEEGGEIIVGGKDNRINTTTPVFNILGLRLKPFINYF 515 (520)
T ss_dssp CCCCCCSSTTCSCSSHHHHHHHHHHHHHHHTCEEECTTCCCCTTCGGGCCCCBCTTTCSBHHHHHHHHHHH
T ss_pred cccccccccccccccchhhHHHHHHHHhhhhccccccCCceeecCccccccCCCCcccCCHHHHHHHHHHH
Confidence 11367899999999999999997653
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=9e-34 Score=240.70 Aligned_cols=140 Identities=20% Similarity=0.275 Sum_probs=130.4
Q ss_pred cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-Ccc
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DNL 80 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~g 80 (177)
+|++|+.++.++++++++||++||++||||++.|++++|+.+||+||.+|.+++.++.+|++++++||.++|.+|| |.+
T Consensus 56 ~L~lLg~l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~ 135 (331)
T 3dss_B 56 VMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAG 135 (331)
T ss_dssp HHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBS
T ss_pred HHHHhCCCchhhHHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEec
Confidence 5789999999999999999999999999999999999999999999999999999889999999999999999999 998
Q ss_pred CCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 81 QPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 81 r~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
+++. +||||+++|++||.. +.++.++ ++||++| |||+.+|+.++|..+||||+++|.+++.
T Consensus 136 ~~~ge~d~~~ty~Al~~L~llg~~---~~~~~~k~v~~L~s~Q~~d-GGfg~~pg~esh~~~T~~al~aL~llg~ 206 (331)
T 3dss_B 136 DIWGEIDTRFSFCAVATLALLGKL---DAINVEKAIEFVLSCMNFD-GGFGCRPGSESHAGQIYCCTGFLAITSQ 206 (331)
T ss_dssp STTCCBCHHHHHHHHHHHHHHTCG---GGSCHHHHHHHHHTTBCTT-SCBCSSTTCCCCHHHHHHHHHHHHHTTC
T ss_pred ccCCCCchHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhCcCC-CCcCCCCCCCCcHHHHHHHHHHHHhccc
Confidence 8643 999999999999986 4445554 6899999 9999999999999999999999999987
No 7
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.97 E-value=4.7e-32 Score=240.02 Aligned_cols=140 Identities=17% Similarity=0.143 Sum_probs=125.1
Q ss_pred cccccC-CCChhcHHHHHHHHHhccCCCCCccCCC--CCCCChHHHHHHHHHHHHhCCC------CccC--HHHHHHHHH
Q psy18133 2 VQHPIG-KLDAINLSKAVEFILSCCNFDGGFGSRP--GSESHAGLTYCCVGFLSITGHL------HEID--ADKLAWWLA 70 (177)
Q Consensus 2 ~l~lL~-~l~~~~~~~~~~~I~scq~~dGGF~~~p--g~esh~~~Ty~Al~~L~llg~l------~~id--~~~l~~~l~ 70 (177)
+|+||+ .++..+++++++||++||++||||++.| ++.+|+.+||+||.+|.+++.. +.|| ++++++||.
T Consensus 98 aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~ 177 (520)
T 3q7a_B 98 SLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFM 177 (520)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHH
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHH
Confidence 578888 7888899999999999999999999999 9999999999999999999974 4578 999999999
Q ss_pred HcCCCCC-CccCCC-----cchHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccC-----------------
Q psy18133 71 ERGDHSS-DNLQPS-----QLSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISD----------------- 122 (177)
Q Consensus 71 ~~Q~~~G-F~gr~~-----k~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~----------------- 122 (177)
++|.+|| |.|..+ +++|||++++++||.. +-.+.++ ++||++| |||+.
T Consensus 178 slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~---~~~~v~kav~fI~scQn~D-GGfGe~s~~~~~~~~~~~~~~~ 253 (520)
T 3q7a_B 178 RCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDII---TPELLHNVDKFVSACQTYE-GGFACASFPFPSVVPSTSAFPT 253 (520)
T ss_dssp HHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCC---CHHHHTTHHHHHHTTBCTT-SSBCSCEEEEC-----------
T ss_pred HHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCC---ChHHHHHHHHHHHHhcCCC-CCccCccccccccccccccccc
Confidence 9999999 988643 2999999999999985 2233333 7899999 99999
Q ss_pred ------CCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 123 ------RPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 123 ------~p~~~~d~~~T~~alasL~ll~~ 145 (177)
.|+.|+|++|||||||||+||+.
T Consensus 254 ~rp~~~~Pg~EaHgGyTfCalAaL~lL~~ 282 (520)
T 3q7a_B 254 SEPSCRVSMAEAHGGYTSCSLNSHFLLTS 282 (520)
T ss_dssp -CCSEEEECSCCCHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCccchhHHHHHHHHHHHhcc
Confidence 78999999999999999999988
No 8
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.97 E-value=7.6e-31 Score=226.51 Aligned_cols=143 Identities=17% Similarity=0.104 Sum_probs=123.2
Q ss_pred cccccCCC--ChhcHHHHHHHHHhccCCC----CCccCCC-----C---CCCChHHHHHHHHHHHHhCCC--CccCHHHH
Q psy18133 2 VQHPIGKL--DAINLSKAVEFILSCCNFD----GGFGSRP-----G---SESHAGLTYCCVGFLSITGHL--HEIDADKL 65 (177)
Q Consensus 2 ~l~lL~~l--~~~~~~~~~~~I~scq~~d----GGF~~~p-----g---~esh~~~Ty~Al~~L~llg~l--~~id~~~l 65 (177)
+|+||+.+ ...+++++++||++||.++ |||++.| + +.+|+++||+||.+|.+|+.. +.+|++++
T Consensus 41 ~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i 120 (390)
T 3dra_B 41 GLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKI 120 (390)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHH
T ss_pred HHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHH
Confidence 57889887 6788999999999998653 9999985 5 689999999999999999984 78999999
Q ss_pred HHHHHHcCC---C-CC-CccCC-------------C---cchHHHHHHHhhhCCccc-------C---Cccchhh-----
Q psy18133 66 AWWLAERGD---H-SS-DNLQP-------------S---QLSWYNFVRAHFEGDFFS-------G---RFCNRAS----- 109 (177)
Q Consensus 66 ~~~l~~~Q~---~-~G-F~gr~-------------~---k~ty~a~a~l~lL~~~~~-------~---~~~d~~~----- 109 (177)
++||.++|. + || |...+ + |++|||+++++||+...+ . +.+|.++
T Consensus 121 ~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I 200 (390)
T 3dra_B 121 MNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFI 200 (390)
T ss_dssp HHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHH
Confidence 999999998 6 89 98221 1 399999999999998841 0 1466665
Q ss_pred hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 110 LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 110 l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
++||++| |||+..|+.|||+++||||||||+||++
T Consensus 201 ~~cq~yd-GGfg~~p~~EsH~G~TfCalaaL~lL~~ 235 (390)
T 3dra_B 201 LDRININ-GGFSSTIMDESHLGFTFCAIASLKLLNY 235 (390)
T ss_dssp HTTBCTT-SCBCSSTTSCCCHHHHHHHHHHHHHTTC
T ss_pred HHhcCCC-CCcCCCCCcccccchhHHHHHHHHHhCc
Confidence 6899999 9999999999999999999999999998
No 9
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.96 E-value=1.2e-29 Score=218.49 Aligned_cols=140 Identities=17% Similarity=0.153 Sum_probs=124.8
Q ss_pred cccccCCCChhcHHHHHHHHHhccC---------CCCCccCCCCC-----------------CCChHHHHHHHHHHHHhC
Q psy18133 2 VQHPIGKLDAINLSKAVEFILSCCN---------FDGGFGSRPGS-----------------ESHAGLTYCCVGFLSITG 55 (177)
Q Consensus 2 ~l~lL~~l~~~~~~~~~~~I~scq~---------~dGGF~~~pg~-----------------esh~~~Ty~Al~~L~llg 55 (177)
+|++|+.++.++++++++||++||+ .+|||++.++. .+|+..||+||.+|.+++
T Consensus 57 ~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg 136 (377)
T 1n4q_B 57 GLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG 136 (377)
T ss_dssp HHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 5789999888899999999999999 68999998764 499999999999999998
Q ss_pred -CCCccCHHHHHHHHHHcCCCCC-CccC--CC----cchHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccC
Q psy18133 56 -HLHEIDADKLAWWLAERGDHSS-DNLQ--PS----QLSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISD 122 (177)
Q Consensus 56 -~l~~id~~~l~~~l~~~Q~~~G-F~gr--~~----k~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~ 122 (177)
.++.+|++++++||.++|.+|| |.|. .+ ++||||++++++||.. .-++.++ ++||++| |||+.
T Consensus 137 ~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~---~~~~v~ka~~fL~scQn~D-GGfGe 212 (377)
T 1n4q_B 137 DDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNW---SGMDMKKAISYIRRSMSYD-NGLAQ 212 (377)
T ss_dssp CCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCG---GGSCHHHHHHHHHHTBCTT-SSBBS
T ss_pred cccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHhcCCC-CCCCC
Confidence 4677999999999999999999 9884 33 2999999999999985 3344444 7899999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 123 RPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 123 ~p~~~~d~~~T~~alasL~ll~~ 145 (177)
.|+.|||+.+||||+++|++++.
T Consensus 213 ~p~~ESh~g~T~cAlaaL~llg~ 235 (377)
T 1n4q_B 213 GAGLESHGGSTFCGIASLCLMGK 235 (377)
T ss_dssp STTSCBCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCchhHHHHHHHHHHHhcC
Confidence 99999999999999999999987
No 10
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.96 E-value=1.6e-29 Score=221.49 Aligned_cols=141 Identities=21% Similarity=0.219 Sum_probs=127.0
Q ss_pred cccccCC---CChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-
Q psy18133 2 VQHPIGK---LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS- 77 (177)
Q Consensus 2 ~l~lL~~---l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G- 77 (177)
+|.+|+. ++.++++++++||.+||++||||++.++.|+|+..||||+++|.+++..+..+++++++||.++|++||
T Consensus 159 aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGG 238 (437)
T 2h6f_B 159 ALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGG 238 (437)
T ss_dssp HHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSS
T ss_pred HHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCC
Confidence 3555664 366899999999999999999999999999999999999999999998777778899999999999999
Q ss_pred CccCCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 78 DNLQPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 78 F~gr~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
|.++|++ |||||+++|.++|.. ++++.++ ++||..+.|||.+||++.+|++||||++++|++|++
T Consensus 239 wg~~pg~eSh~~~T~~Al~aL~~lg~~---~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~ 313 (437)
T 2h6f_B 239 IGGVPGMEAHGGYTFCGLAALVILKRE---RSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313 (437)
T ss_dssp BCSSTTSCCCHHHHHHHHHHHHHHTCG---GGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHH
T ss_pred cCCCCCCCCCccHHHHHHHHHHHcCCC---CcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhh
Confidence 9999875 999999999999988 6677665 679985459999999999999999999999999975
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.44 E-value=7.4e-13 Score=120.41 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=97.8
Q ss_pred cHHHHHHHHHhccCCCCCccCCCC-------------------CCCChHHHHHHHHHHHHhCCC-CccCHHHHHHHHHHc
Q psy18133 13 NLSKAVEFILSCCNFDGGFGSRPG-------------------SESHAGLTYCCVGFLSITGHL-HEIDADKLAWWLAER 72 (177)
Q Consensus 13 ~~~~~~~~I~scq~~dGGF~~~pg-------------------~esh~~~Ty~Al~~L~llg~l-~~id~~~l~~~l~~~ 72 (177)
..++.++||+++|++||||+..+. ..+++..|..++.+|..++.. ....+++.++||.++
T Consensus 399 ~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~ 478 (631)
T 2sqc_A 399 AMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKRE 478 (631)
T ss_dssp HHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 467899999999999999975321 127788999999999988752 223468899999999
Q ss_pred CCCCC-CccCCCc-chHHHHHHHhhhCCccc---CCccchhh---hcccCCCCCCccCCC----------CCCCCHHHHH
Q psy18133 73 GDHSS-DNLQPSQ-LSWYNFVRAHFEGDFFS---GRFCNRAS---LVSLDVESGGISDRP----------LDIPDPFHTL 134 (177)
Q Consensus 73 Q~~~G-F~gr~~k-~ty~a~a~l~lL~~~~~---~~~~d~~~---l~cq~~d~GGF~~~p----------~~~~d~~~T~ 134 (177)
|++|| |.|+.+. ++|+...++..|..... ...+.+.. ++||+.| |||+..+ +.++|..+|+
T Consensus 479 Q~~DGsw~g~wg~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~D-GgWg~~~~sy~~~~~~~~~~s~v~~Ta 557 (631)
T 2sqc_A 479 QKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPD-GGWGEDCRSYEDPAYAGKGASTPSQTA 557 (631)
T ss_dssp CCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTT-SCCCCCGGGGTCGGGTTCSSCCHHHHH
T ss_pred cCCCCCCCCCCCCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCC-CCcCCccccccccccCCCCCCCHHHHH
Confidence 99999 9877654 77766555555543211 01122211 6899998 9997643 4678999999
Q ss_pred HHHHHHHhcCC
Q psy18133 135 FGVAALTMLDP 145 (177)
Q Consensus 135 ~alasL~ll~~ 145 (177)
|+|.+|...+.
T Consensus 558 ~ALlaL~~ag~ 568 (631)
T 2sqc_A 558 WALMALIAGGR 568 (631)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99999999887
No 12
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.35 E-value=4.8e-12 Score=116.93 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=100.1
Q ss_pred hhcHHHHHHHHHhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHHhCCC---C-----ccC
Q psy18133 11 AINLSKAVEFILSCCNFDGGFGSRPG---------------------SESHAGLTYCCVGFLSITGHL---H-----EID 61 (177)
Q Consensus 11 ~~~~~~~~~~I~scq~~dGGF~~~pg---------------------~esh~~~Ty~Al~~L~llg~l---~-----~id 61 (177)
....++.++||+++|++||||+.... ..+++..|.++|.+|..++.. . ...
T Consensus 480 ~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~ 559 (732)
T 1w6k_A 480 RERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRET 559 (732)
T ss_dssp HHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHH
Confidence 34568899999999999999963211 235677899999999988642 1 123
Q ss_pred HHHHHHHHHHcCCCCC-CccCCCc----chHHHHHHHhhhCCcccCC----ccchhh---hcccCCCCCCccCC------
Q psy18133 62 ADKLAWWLAERGDHSS-DNLQPSQ----LSWYNFVRAHFEGDFFSGR----FCNRAS---LVSLDVESGGISDR------ 123 (177)
Q Consensus 62 ~~~l~~~l~~~Q~~~G-F~gr~~k----~ty~a~a~l~lL~~~~~~~----~~d~~~---l~cq~~d~GGF~~~------ 123 (177)
+++.++||.++|.+|| |.++.+. .+++++.+|..+|...... .+.+.. +++|+.| ||++..
T Consensus 560 i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~D-GGWge~~~s~~~ 638 (732)
T 1w6k_A 560 LTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMAD-GGWGEDFESCEE 638 (732)
T ss_dssp HHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTT-SCCCBCTHHHHH
T ss_pred HHHHHHHHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccC-CCCCCCCccccc
Confidence 6889999999999999 9887653 4668899999988753211 122222 6899988 999874
Q ss_pred ----CCCCCCHHHHHHHHHHHHhcCC
Q psy18133 124 ----PLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 124 ----p~~~~d~~~T~~alasL~ll~~ 145 (177)
++..+|...|.||+.+|...+.
T Consensus 639 ~~y~~~~~s~v~~TAwALlALl~ag~ 664 (732)
T 1w6k_A 639 RRYVQSAQSQIHNTCWAMMGLMAVRH 664 (732)
T ss_dssp TSCCBCSSCCHHHHHHHHHHHHHTTC
T ss_pred cccCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3667899999999999987664
No 13
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.16 E-value=1.5e-10 Score=105.19 Aligned_cols=129 Identities=18% Similarity=0.127 Sum_probs=92.5
Q ss_pred hcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCC-CccCHHHHHHHHHHcCCCCC-CccCCC------
Q psy18133 12 INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHL-HEIDADKLAWWLAERGDHSS-DNLQPS------ 83 (177)
Q Consensus 12 ~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l-~~id~~~l~~~l~~~Q~~~G-F~gr~~------ 83 (177)
..+++.++||.++|++||||.+..+ ..+...|..++.+|..++.. ....+++.++||.++|++|| |...+.
T Consensus 466 ~~i~rai~~L~~~Q~~DGsw~g~wg-~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~ 544 (631)
T 2sqc_A 466 KVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPA 544 (631)
T ss_dssp HHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGG
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccc
Confidence 4578999999999999999966544 33555666677777777742 23457899999999999999 953321
Q ss_pred -------c--chHHHHHHHhhhCCcccCCccchhh---hcccCCCCCCccCCCCCC---C-------CHHHHHHHHHHHH
Q psy18133 84 -------Q--LSWYNFVRAHFEGDFFSGRFCNRAS---LVSLDVESGGISDRPLDI---P-------DPFHTLFGVAALT 141 (177)
Q Consensus 84 -------k--~ty~a~a~l~lL~~~~~~~~~d~~~---l~cq~~d~GGF~~~p~~~---~-------d~~~T~~alasL~ 141 (177)
. .|+||+.+|..++.... ..+.+.. +++|+.+ |||......- + +.+-+++.|-||+
T Consensus 545 ~~~~~~s~v~~Ta~ALlaL~~ag~~~~-~~i~rav~wL~~~Q~~d-Ggw~~~~~tg~gf~~~~yl~y~~y~~~f~l~AL~ 622 (631)
T 2sqc_A 545 YAGKGASTPSQTAWALMALIAGGRAES-EAARRGVQYLVETQRPD-GGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALG 622 (631)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHTTCSSS-HHHHHHHHHHHHHCCTT-SCCCCCSCCEEEETTTEEEEETTHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHhccCCC-CCcCCCCcccccccccceeeccchhhHHHHHHHH
Confidence 1 69999999999887521 1222222 5799988 9999876432 1 5677888888887
Q ss_pred hc
Q psy18133 142 ML 143 (177)
Q Consensus 142 ll 143 (177)
..
T Consensus 623 ~y 624 (631)
T 2sqc_A 623 RY 624 (631)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 14
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=98.91 E-value=5.9e-09 Score=96.35 Aligned_cols=128 Identities=14% Similarity=0.101 Sum_probs=89.3
Q ss_pred cHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCc-----cCHHHHHHHHHHcCCCCC-CccCC----
Q psy18133 13 NLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHE-----IDADKLAWWLAERGDHSS-DNLQP---- 82 (177)
Q Consensus 13 ~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~-----id~~~l~~~l~~~Q~~~G-F~gr~---- 82 (177)
.+++.++||.++|++||||.+..+. .+.-.|++++.+|..+|.... ..+++.++||.++|++|| |....
T Consensus 559 ~i~rAv~yL~~~Q~~DGsW~g~wg~-~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~ 637 (732)
T 1w6k_A 559 TLTQGLEFCRRQQRADGSWEGSWGV-CFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCE 637 (732)
T ss_dssp HHHHHHHHHHHHSCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHH
T ss_pred HHHHHHHHHHhhcCCCCCccCcCCC-ccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCcccc
Confidence 4778999999999999999886552 355578899999999987432 347889999999999999 87532
Q ss_pred ------C---c--chHHHHHHHhhhCCcccCCccchhh---hcccCCCCCCccCCCCC--CC-------CHHHHHHHHHH
Q psy18133 83 ------S---Q--LSWYNFVRAHFEGDFFSGRFCNRAS---LVSLDVESGGISDRPLD--IP-------DPFHTLFGVAA 139 (177)
Q Consensus 83 ------~---k--~ty~a~a~l~lL~~~~~~~~~d~~~---l~cq~~d~GGF~~~p~~--~~-------d~~~T~~alas 139 (177)
. . .|.||+.+|..++.... ..+++.. +++|+.+ |||...+.. .+ +.+-.++.+-|
T Consensus 638 ~~~y~~~~~s~v~~TAwALlALl~ag~~~~-~~i~r~v~wL~~~Q~~~-Ggf~~~~~~g~f~~~~~i~Y~~y~~~fpl~A 715 (732)
T 1w6k_A 638 ERRYVQSAQSQIHNTCWAMMGLMAVRHPDI-EAQERGVRCLLEKQLPN-GDWPQENIAGVFNKSCAISYTSYRNIFPIWA 715 (732)
T ss_dssp HTSCCBCSSCCHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHCCTT-SCCCCCSCCEEETTTEEECCTTHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHhcCCC-CCccCCcccccccchhhhcccchhHHHHHHH
Confidence 1 1 78889888877775410 1122222 5799988 999976531 11 23445555666
Q ss_pred HHhc
Q psy18133 140 LTML 143 (177)
Q Consensus 140 L~ll 143 (177)
|+..
T Consensus 716 L~~y 719 (732)
T 1w6k_A 716 LGRF 719 (732)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 15
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.87 E-value=1.6e-08 Score=82.67 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=55.8
Q ss_pred HHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCH---HHHHHHHHH-cCCCCC-CccCC
Q psy18133 18 VEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDA---DKLAWWLAE-RGDHSS-DNLQP 82 (177)
Q Consensus 18 ~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~---~~l~~~l~~-~Q~~~G-F~gr~ 82 (177)
+++++++|++||||+..++.++|...|-+++.+|........+|. ++.++||.+ +|.+|| |.++.
T Consensus 44 ~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~ 113 (277)
T 1qqf_A 44 YTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDG 113 (277)
T ss_dssp HHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSS
T ss_pred HHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCc
Confidence 344999999999999999999999999999999999987555663 578999996 999999 87654
No 16
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.80 E-value=3.2e-08 Score=82.24 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=56.8
Q ss_pred HHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCH---HHHHHHHHH-cCCCCC-CccCC
Q psy18133 16 KAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDA---DKLAWWLAE-RGDHSS-DNLQP 82 (177)
Q Consensus 16 ~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~---~~l~~~l~~-~Q~~~G-F~gr~ 82 (177)
+-+++++++|++||||+..++.++|...|-+++.+|........+|. ++.++||.+ +|.+|| |.++.
T Consensus 58 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~ 129 (310)
T 2wy7_A 58 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDA 129 (310)
T ss_dssp HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSS
T ss_pred HHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCC
Confidence 34455999999999999999999999999999999999987555663 578999996 999999 87654
No 17
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.11 E-value=1.3e-05 Score=78.00 Aligned_cols=64 Identities=20% Similarity=0.179 Sum_probs=55.5
Q ss_pred HHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCc-cC---HHHHHHHHHHcCCCCC-CccC
Q psy18133 18 VEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHE-ID---ADKLAWWLAERGDHSS-DNLQ 81 (177)
Q Consensus 18 ~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~-id---~~~l~~~l~~~Q~~~G-F~gr 81 (177)
+++++++|++||||+..++.++|.+.|.+++.+|..+..... +| .++.++||.++|.+|| |.++
T Consensus 878 ~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~ 946 (1325)
T 2pn5_A 878 YQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKA 946 (1325)
T ss_dssp HHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCC
T ss_pred HHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCcccc
Confidence 345599999999999999999999999999999999876544 65 4689999999999999 9765
No 18
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.03 E-value=1.1e-05 Score=68.64 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccC---HHHHHHHHHHcCCCCC-CccC
Q psy18133 14 LSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID---ADKLAWWLAERGDHSS-DNLQ 81 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id---~~~l~~~l~~~Q~~~G-F~gr 81 (177)
.++.++|+++.|++||||+..++..++...|-+++-+|...+..-.++ .++.++||.++|.+|| |.++
T Consensus 93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~ 164 (367)
T 1hzf_A 93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDP 164 (367)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCS
T ss_pred HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccc
Confidence 556778999999999999988887888999999999998887543343 4678999999999999 8765
No 19
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=97.92 E-value=4.7e-05 Score=61.88 Aligned_cols=118 Identities=19% Similarity=0.124 Sum_probs=71.3
Q ss_pred cHHHHHHHHHh-ccCCCCCccCCCCC-------------CCChHHHHHHHHHHHHhCC-----CC--ccCHHHHHHHHHH
Q psy18133 13 NLSKAVEFILS-CCNFDGGFGSRPGS-------------ESHAGLTYCCVGFLSITGH-----LH--EIDADKLAWWLAE 71 (177)
Q Consensus 13 ~~~~~~~~I~s-cq~~dGGF~~~pg~-------------esh~~~Ty~Al~~L~llg~-----l~--~id~~~l~~~l~~ 71 (177)
-.++.++||.+ .|.+||+|.+.-+. ++....|..++.+|...+. .. ...+++.++||.+
T Consensus 90 ~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~ 169 (277)
T 1qqf_A 90 VLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEA 169 (277)
T ss_dssp HHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHH
Confidence 45688999996 99999999764321 2345667777777765532 11 2245678899998
Q ss_pred cCCC---------------------------------CC-CccCCCc------chHHHHHHHhhhCCcccCCccchhh--
Q psy18133 72 RGDH---------------------------------SS-DNLQPSQ------LSWYNFVRAHFEGDFFSGRFCNRAS-- 109 (177)
Q Consensus 72 ~Q~~---------------------------------~G-F~gr~~k------~ty~a~a~l~lL~~~~~~~~~d~~~-- 109 (177)
++.. +| +-++++. .|-||+-++...+.. +.+++-.
T Consensus 170 ~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~---~~~~~~v~w 246 (277)
T 1qqf_A 170 SYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF---DSVPPVVRW 246 (277)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT---TSHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh---hhHHHHHHH
Confidence 8664 33 3223321 344555554444332 2222222
Q ss_pred -hcccCCCCCCccCCCCCCCCHHHHHHHHHHHH
Q psy18133 110 -LVSLDVESGGISDRPLDIPDPFHTLFGVAALT 141 (177)
Q Consensus 110 -l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ 141 (177)
+..|+.+ |||.. ...|..||-||+
T Consensus 247 L~~qq~~~-Ggw~s-------Tq~T~~aL~AL~ 271 (277)
T 1qqf_A 247 LNDERYYG-GGYGS-------TQATFMVFQALA 271 (277)
T ss_dssp HHHCCCCT-TSTTC-------HHHHHHHHHHHH
T ss_pred HHHccCCC-CCeec-------chHHHHHHHHHH
Confidence 4678877 99986 467777877776
No 20
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=97.68 E-value=0.00022 Score=58.86 Aligned_cols=121 Identities=18% Similarity=0.126 Sum_probs=73.0
Q ss_pred cHHHHHHHHHh-ccCCCCCccCCCCC-------------CCChHHHHHHHHHHHHhCC-----CC--ccCHHHHHHHHHH
Q psy18133 13 NLSKAVEFILS-CCNFDGGFGSRPGS-------------ESHAGLTYCCVGFLSITGH-----LH--EIDADKLAWWLAE 71 (177)
Q Consensus 13 ~~~~~~~~I~s-cq~~dGGF~~~pg~-------------esh~~~Ty~Al~~L~llg~-----l~--~id~~~l~~~l~~ 71 (177)
-.++.++||.+ .|.+||+|.+.-+. ++....|..++.+|...+. .. ...+++.++||.+
T Consensus 106 ~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~ 185 (310)
T 2wy7_A 106 VLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEA 185 (310)
T ss_dssp HHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHH
Confidence 45689999996 99999999764321 2345567777777765532 11 1245678899998
Q ss_pred cCCC---------------------------------CC-CccCCCc------chHHHHHHHhhhCCcccCCccchhh--
Q psy18133 72 RGDH---------------------------------SS-DNLQPSQ------LSWYNFVRAHFEGDFFSGRFCNRAS-- 109 (177)
Q Consensus 72 ~Q~~---------------------------------~G-F~gr~~k------~ty~a~a~l~lL~~~~~~~~~d~~~-- 109 (177)
+|.. +| +-+.++. .|-||+-++...+.. +.+++-.
T Consensus 186 ~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~---~~~~~~v~w 262 (310)
T 2wy7_A 186 NYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF---DFVPPVVRW 262 (310)
T ss_dssp HGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT---TTHHHHHHH
T ss_pred HhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCCh---hhHHHHHHH
Confidence 8663 23 3222221 344555555444432 2222222
Q ss_pred -hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcC
Q psy18133 110 -LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLD 144 (177)
Q Consensus 110 -l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~ 144 (177)
+..|+.+ |||.. ...|..+|-||+...
T Consensus 263 L~~qq~~~-Ggw~s-------Tq~T~~aL~AL~~y~ 290 (310)
T 2wy7_A 263 LNEQRYYG-GGYGS-------TQATFMVFQALAQYQ 290 (310)
T ss_dssp HHHTTCCC-CSTTC-------HHHHHHHHHHHHHHH
T ss_pred HHHccCCC-CCeec-------cHHHHHHHHHHHHHH
Confidence 4678877 99965 477788888887653
No 21
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=97.31 E-value=0.00076 Score=66.51 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=63.8
Q ss_pred HHHHHHHHhccCCCCCccCCCC----CCCChHHHHHHHHHHHHhCCCCccC---HHHHHHHHHHcCCCCC-Cc--cCC--
Q psy18133 15 SKAVEFILSCCNFDGGFGSRPG----SESHAGLTYCCVGFLSITGHLHEID---ADKLAWWLAERGDHSS-DN--LQP-- 82 (177)
Q Consensus 15 ~~~~~~I~scq~~dGGF~~~pg----~esh~~~Ty~Al~~L~llg~l~~id---~~~l~~~l~~~Q~~~G-F~--gr~-- 82 (177)
++.++|+++.|+.||||+..++ .+++.+.|-+++-.|......-.+| .++.++||.++|.+|| |. |+.
T Consensus 986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~ 1065 (1451)
T 4acq_A 986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLN 1065 (1451)
T ss_dssp HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSC
T ss_pred HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccc
Confidence 4567899999999999997754 5689999999999999887543343 5678899999999999 86 332
Q ss_pred --------Cc--chHHHHHHHhhhCC
Q psy18133 83 --------SQ--LSWYNFVRAHFEGD 98 (177)
Q Consensus 83 --------~k--~ty~a~a~l~lL~~ 98 (177)
+. .|.+++.+|...|.
T Consensus 1066 ~~m~gg~~~~~~lTAyvl~aL~~~g~ 1091 (1451)
T 4acq_A 1066 NAIKGGVEDEVTLSAYITIALLEIPL 1091 (1451)
T ss_dssp GGGCCSCSCHHHHHHHHHHHHHHTTC
T ss_pred hhhcCCCCCCccchHHHHHHHHHcCC
Confidence 11 36667777766554
No 22
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=97.10 E-value=0.0011 Score=62.51 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=54.0
Q ss_pred HHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccC---HHHHHHHHHH-cCCCCC-CccC
Q psy18133 16 KAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID---ADKLAWWLAE-RGDHSS-DNLQ 81 (177)
Q Consensus 16 ~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id---~~~l~~~l~~-~Q~~~G-F~gr 81 (177)
+.++++++.|++||||+..++.+++.+.|-+++-.|........++ .++.++||.+ +|.++| |.++
T Consensus 303 ~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~ 373 (915)
T 2hr0_B 303 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQED 373 (915)
T ss_dssp HHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCC
T ss_pred HHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccC
Confidence 4456788999999999999888999999999998888876544455 4678899995 999999 8643
No 23
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=96.82 E-value=0.0028 Score=58.39 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=52.2
Q ss_pred HHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccC---HHHHHHHHHHcCCCCC-Cc
Q psy18133 18 VEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID---ADKLAWWLAERGDHSS-DN 79 (177)
Q Consensus 18 ~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id---~~~l~~~l~~~Q~~~G-F~ 79 (177)
++=+++.|++||||+..++.+++.+.|-+++-+|........+| ..+.+.||.+.|.++| |.
T Consensus 374 yqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~ 439 (767)
T 4fxk_B 374 YMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQ 439 (767)
T ss_dssp HHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBC
T ss_pred HHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccch
Confidence 34456789999999999999999999999999999987765555 4567899999999999 85
No 24
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=96.81 E-value=0.0013 Score=56.92 Aligned_cols=85 Identities=14% Similarity=0.004 Sum_probs=56.7
Q ss_pred HHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCcc---CHHHHHHHHHHcCCCCC-CccCCCcchHHHHH
Q psy18133 16 KAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEI---DADKLAWWLAERGDHSS-DNLQPSQLSWYNFV 91 (177)
Q Consensus 16 ~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~i---d~~~l~~~l~~~Q~~~G-F~gr~~k~ty~a~a 91 (177)
.++++|.+-|.+||+|| +..+|--|+.+|...+..... +..+.++||.+ |.++| |. .|. .+ +=+
T Consensus 210 ~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-np~-at--aQ~ 277 (414)
T 2bb6_A 210 RVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-NPL-MI--SQL 277 (414)
T ss_dssp HHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-SHH-HH--HHH
T ss_pred HHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-ChH-HH--HHH
Confidence 34488889999999997 355788899998888753222 56779999999 99999 97 220 11 112
Q ss_pred HHhhhCCcccCCccchhhhcccCCC
Q psy18133 92 RAHFEGDFFSGRFCNRASLVSLDVE 116 (177)
Q Consensus 92 ~l~lL~~~~~~~~~d~~~l~cq~~d 116 (177)
..++.++ .+.|.....|+..+
T Consensus 278 lpaL~gk----ty~dv~~~~C~~~~ 298 (414)
T 2bb6_A 278 LPVLNQK----SYVDLISPDCQAPR 298 (414)
T ss_dssp HHHTTTC----CGGGGGSCCSSSCC
T ss_pred HHHhcCC----CccccccCCCCCCc
Confidence 2223333 35565557788764
No 25
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=96.14 E-value=0.026 Score=48.60 Aligned_cols=91 Identities=14% Similarity=-0.045 Sum_probs=62.2
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCC--CccCHHHHHHHHHHcCCCCC-CccCCCcchHHHH
Q psy18133 14 LSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHL--HEIDADKLAWWLAERGDHSS-DNLQPSQLSWYNF 90 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l--~~id~~~l~~~l~~~Q~~~G-F~gr~~k~ty~a~ 90 (177)
.++++++|.+-|++||+|| ++.+|--|+++|...+.. ..=+..+..+||.+ |..+| |. .| .-+.
T Consensus 185 i~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-np----~~ta 251 (399)
T 2pmv_A 185 LKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-NP----MSIA 251 (399)
T ss_dssp HHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-SH----HHHH
T ss_pred HHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-CH----HHHH
Confidence 4578889999999999997 688999999999998863 11278899999998 88999 96 22 1122
Q ss_pred HHHhhhCCcccCCccchhhhcccCCCCCCcc
Q psy18133 91 VRAHFEGDFFSGRFCNRASLVSLDVESGGIS 121 (177)
Q Consensus 91 a~l~lL~~~~~~~~~d~~~l~cq~~d~GGF~ 121 (177)
-++-.|... .+.|.....|+..+ +-+-
T Consensus 252 QilPaL~~k---tyldv~~~~C~~~~-~~~~ 278 (399)
T 2pmv_A 252 QILPSLKGK---TYLDVPQVTCSPDH-EVQP 278 (399)
T ss_dssp HHHHHHTTC---CGGGGGGCCBSCC------
T ss_pred HHHHHhcCC---CccCcCcCCCCCCc-cccc
Confidence 222223323 46666667898865 4443
No 26
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=95.89 E-value=0.023 Score=56.74 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=50.0
Q ss_pred HHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccC---HHHHHHHHHH-cCCCCC-Cc
Q psy18133 21 ILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID---ADKLAWWLAE-RGDHSS-DN 79 (177)
Q Consensus 21 I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id---~~~l~~~l~~-~Q~~~G-F~ 79 (177)
+++.|++||||+..++.+++.+.|-+++-+|......-.+| .++.++||.+ +|.++| |.
T Consensus 1055 ~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~ 1118 (1661)
T 2b39_A 1055 QLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQ 1118 (1661)
T ss_dssp HHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBC
T ss_pred HHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccc
Confidence 45689999999999888999999999999999987654555 4678899995 999999 84
No 27
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=95.79 E-value=0.018 Score=57.41 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=53.9
Q ss_pred cHHHHHHHH-------HhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccC---HHHHHHHHHH-cCCCCC-Cc
Q psy18133 13 NLSKAVEFI-------LSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID---ADKLAWWLAE-RGDHSS-DN 79 (177)
Q Consensus 13 ~~~~~~~~I-------~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id---~~~l~~~l~~-~Q~~~G-F~ 79 (177)
..++++++| ++.|++||||+..++.+++.+.|-+++-+|......-.+| .++.++||.+ +|.++| |.
T Consensus 1041 ~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~ 1119 (1676)
T 3cu7_A 1041 EKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFK 1119 (1676)
T ss_dssp HHHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBC
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCccc
Confidence 344555553 4678999999998888999999999999999887644455 4678899999 999999 85
No 28
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=95.15 E-value=0.088 Score=49.50 Aligned_cols=63 Identities=19% Similarity=0.101 Sum_probs=41.3
Q ss_pred hcHHHHHHHHHh-ccCCCCCccCCCC--------C-----CCChHHHHHHHHHHHHhCCC-----Cc--cCHHHHHHHHH
Q psy18133 12 INLSKAVEFILS-CCNFDGGFGSRPG--------S-----ESHAGLTYCCVGFLSITGHL-----HE--IDADKLAWWLA 70 (177)
Q Consensus 12 ~~~~~~~~~I~s-cq~~dGGF~~~pg--------~-----esh~~~Ty~Al~~L~llg~l-----~~--id~~~l~~~l~ 70 (177)
.-.++.++|+.+ .|.+||.|...-. . ++....|.+++.+|...+.. .. ....+.++||.
T Consensus 350 ~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~ 429 (915)
T 2hr0_B 350 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLE 429 (915)
T ss_dssp HHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHH
Confidence 346778899995 9999999965321 1 24566677788888776543 11 12356778888
Q ss_pred HcCC
Q psy18133 71 ERGD 74 (177)
Q Consensus 71 ~~Q~ 74 (177)
+++.
T Consensus 430 ~~~~ 433 (915)
T 2hr0_B 430 ANYM 433 (915)
T ss_dssp HHGG
T ss_pred Hhhh
Confidence 7654
No 29
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=95.06 E-value=0.0039 Score=62.24 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHH-------HhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCc-cC---HHHHHHHHHH-cCCCCC-Cc
Q psy18133 14 LSKAVEFI-------LSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHE-ID---ADKLAWWLAE-RGDHSS-DN 79 (177)
Q Consensus 14 ~~~~~~~I-------~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~-id---~~~l~~~l~~-~Q~~~G-F~ 79 (177)
++++.++| ++.|++||||+...+.+++.+.|.+++-+|....+.-. || ..+.++||.+ +|.+|| |.
T Consensus 1025 ~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~ 1103 (1642)
T 3prx_B 1025 RTEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFK 1103 (1642)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCccc
Confidence 44555554 45789999999887788899999999988887665333 44 5678999997 899999 85
No 30
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=94.73 E-value=0.076 Score=44.67 Aligned_cols=79 Identities=11% Similarity=-0.073 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCCCC-CccCCC--cc---hHHHHHHHhhhCCcccCCccchhh--------hcccCCCCCCccCCCC--
Q psy18133 62 ADKLAWWLAERGDHSS-DNLQPS--QL---SWYNFVRAHFEGDFFSGRFCNRAS--------LVSLDVESGGISDRPL-- 125 (177)
Q Consensus 62 ~~~l~~~l~~~Q~~~G-F~gr~~--k~---ty~a~a~l~lL~~~~~~~~~d~~~--------l~cq~~d~GGF~~~p~-- 125 (177)
.++.++|+.+.|++|| |..-.. .. |-+++-+|..+++.. .++... .+.|..| |+|...-.
T Consensus 93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~---~v~~~~i~~a~~~L~~~Q~~d-G~~~~~~~~~ 168 (367)
T 1hzf_A 93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQV---GGSPEKLQETSNWLLSQQQAD-GSFQDPCPVL 168 (367)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGT---CCCHHHHHHHHHHHGGGBCTT-SCBCCSSCCS
T ss_pred HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHhhccC-CCcccccccc
Confidence 4567889999999999 854332 12 334555666555431 122221 5689888 99987522
Q ss_pred ----------CCCCHHHHHHHHHHHHhcC
Q psy18133 126 ----------DIPDPFHTLFGVAALTMLD 144 (177)
Q Consensus 126 ----------~~~d~~~T~~alasL~ll~ 144 (177)
.+++..-|.|++.+|.-.+
T Consensus 169 ~~~~~gg~~~~~~~~~lTA~vl~aL~~~g 197 (367)
T 1hzf_A 169 DRSMQGGLVGNDETVALTAFVTIALHHGL 197 (367)
T ss_dssp CGGGGGGGSSTTHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCcccccchHHHHHHHHhhh
Confidence 2344667888888886543
No 31
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=94.30 E-value=0.057 Score=46.64 Aligned_cols=111 Identities=5% Similarity=-0.174 Sum_probs=68.3
Q ss_pred HHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCC--c-----cC--HHHHHHHHHHcCCCCC-CccCCCc
Q psy18133 15 SKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLH--E-----ID--ADKLAWWLAERGDHSS-DNLQPSQ 84 (177)
Q Consensus 15 ~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~--~-----id--~~~l~~~l~~~Q~~~G-F~gr~~k 84 (177)
+..+..+..-|. +++|. -|...++-.|-.|+.+|.-+++-+ + |+ .+.++++|.+.|++|| |. |.
T Consensus 155 ~~~v~~Ll~~~~-~~~~~--~g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG---N~ 228 (414)
T 2bb6_A 155 DSVVGKLLYAVE-HKPHL--LQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFG---NV 228 (414)
T ss_dssp HHHHHHHHHHHH-SSSCS--CCTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBS---ST
T ss_pred HHHHHHHHHHhh-ccCcC--CCCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCcc---ch
Confidence 345555555444 45665 233457888888888888887521 1 22 2345588999999999 84 44
Q ss_pred -chHHHHHHHhhhCCcccC-Cccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHH
Q psy18133 85 -LSWYNFVRAHFEGDFFSG-RFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALT 141 (177)
Q Consensus 85 -~ty~a~a~l~lL~~~~~~-~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ 141 (177)
.|=+|+-+|...+..... +| +..+ ++ |..+ |+|+ ++..|.-++-+|.
T Consensus 229 ~ST~lA~QAL~~~~~~~~~~~w-~~~~a~~~Ll~-q~~d-G~F~-------np~ataQ~lpaL~ 282 (414)
T 2bb6_A 229 YSTPLALQLLMGSLRPSVELGT-ACLKAKAALQA-SLQH-KTFQ-------NPLMISQLLPVLN 282 (414)
T ss_dssp TTHHHHHHHHTTCSSCCHHHHH-HHHHHHHHHHH-HHTT-TCCC-------SHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhcCCCcccccc-hHHHHHHHHHH-hccC-CCCC-------ChHHHHHHHHHhc
Confidence 456677777666653210 13 2222 45 8888 9997 6667776666654
No 32
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=89.82 E-value=0.11 Score=43.52 Aligned_cols=70 Identities=13% Similarity=0.085 Sum_probs=46.0
Q ss_pred HHHHHHHHHhccCCCCCccCC-CCC---CCCh----HHHHHHHHHHHHhCC----CC----------c--cCHHHHHHHH
Q psy18133 14 LSKAVEFILSCCNFDGGFGSR-PGS---ESHA----GLTYCCVGFLSITGH----LH----------E--IDADKLAWWL 69 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~-pg~---esh~----~~Ty~Al~~L~llg~----l~----------~--id~~~l~~~l 69 (177)
.++.++||++.|.+|||++.. |.. ..|+ ..|--+|-.|..++. .+ . .-+++.++||
T Consensus 99 i~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~L 178 (332)
T 1gxm_A 99 VRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYI 178 (332)
T ss_dssp HHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHH
Confidence 457899999999999999975 211 1111 234455556666542 11 1 1256899999
Q ss_pred HHcCCCCC-CccCCC
Q psy18133 70 AERGDHSS-DNLQPS 83 (177)
Q Consensus 70 ~~~Q~~~G-F~gr~~ 83 (177)
+..|-++| ..++..
T Consensus 179 lk~Qe~dggw~g~Wg 193 (332)
T 1gxm_A 179 LKAQWKQNGVLTVWC 193 (332)
T ss_dssp HHHSCEETTEECCCC
T ss_pred HHhhCccCCCcCeec
Confidence 99999988 546654
No 33
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=89.76 E-value=1.6 Score=42.49 Aligned_cols=75 Identities=9% Similarity=-0.104 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCCC-CccCCCc-----chHHHHHHHhhhCCcccCCc-cchhh--------hcccCCCCCCccCCCC--
Q psy18133 63 DKLAWWLAERGDHSS-DNLQPSQ-----LSWYNFVRAHFEGDFFSGRF-CNRAS--------LVSLDVESGGISDRPL-- 125 (177)
Q Consensus 63 ~~l~~~l~~~Q~~~G-F~gr~~k-----~ty~a~a~l~lL~~~~~~~~-~d~~~--------l~cq~~d~GGF~~~p~-- 125 (177)
++.++|+.++|++|| |..-++. .|-+++-+|..+.+. .. +|.+. .+.|..| |.|...-.
T Consensus 875 ~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~---~~~v~~~~l~~a~~~L~~~q~~d-G~f~~~~~~~ 950 (1325)
T 2pn5_A 875 RQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKY---ISDIDAAMVEKALDWLASKQHFS-GRFDKAGAEY 950 (1325)
T ss_dssp HHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTT---CSCSCHHHHHHHHHHHHHTCCTT-SCCCCCSCCS
T ss_pred HHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhh---EEcCCHHHHHHHHHHHHhhhccC-CCcccccccc
Confidence 344557789999999 8654432 455566677666544 22 44322 4578877 98866421
Q ss_pred -------CCCCHHHHHHHHHHHH
Q psy18133 126 -------DIPDPFHTLFGVAALT 141 (177)
Q Consensus 126 -------~~~d~~~T~~alasL~ 141 (177)
...+..+|.|++++|.
T Consensus 951 ~~~~~g~~~~~~~~tayvl~aL~ 973 (1325)
T 2pn5_A 951 HKEMQGGLRNGVALTSYVLMALL 973 (1325)
T ss_dssp CHHHHCCSSTTHHHHHHHHHHHH
T ss_pred ChhhcCcccCCccccHHHHHHHh
Confidence 1235667777777765
No 34
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=88.97 E-value=0.34 Score=41.74 Aligned_cols=64 Identities=13% Similarity=0.014 Sum_probs=40.6
Q ss_pred HHHHHHHHHhccCCCCCccCCC-CC---CCCh----HHHHHHHHHHHHhCC--C--Cc----------cCHHHHHHHHHH
Q psy18133 14 LSKAVEFILSCCNFDGGFGSRP-GS---ESHA----GLTYCCVGFLSITGH--L--HE----------IDADKLAWWLAE 71 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~p-g~---esh~----~~Ty~Al~~L~llg~--l--~~----------id~~~l~~~l~~ 71 (177)
.++.++||++.|.+|||++..- .. -.|+ ..|--++-.|..++. . .. .-+++.++||+.
T Consensus 177 i~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~ 256 (408)
T 1r76_A 177 ALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVE 256 (408)
T ss_dssp HHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHHH
Confidence 4578999999999999998652 11 1111 123333444444432 1 11 125689999999
Q ss_pred cCCC-CC
Q psy18133 72 RGDH-SS 77 (177)
Q Consensus 72 ~Q~~-~G 77 (177)
.|.+ ||
T Consensus 257 ~Qe~~dG 263 (408)
T 1r76_A 257 TQVVQDG 263 (408)
T ss_dssp HSCEETT
T ss_pred hhcccCC
Confidence 9999 99
No 35
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=85.83 E-value=1 Score=41.80 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=37.3
Q ss_pred HHHHHHHHhccCCCCCccCCCCCCC-C-hHHHHHHHHHHHHhCCCCccCHHHHHHHHH
Q psy18133 15 SKAVEFILSCCNFDGGFGSRPGSES-H-AGLTYCCVGFLSITGHLHEIDADKLAWWLA 70 (177)
Q Consensus 15 ~~~~~~I~scq~~dGGF~~~pg~es-h-~~~Ty~Al~~L~llg~l~~id~~~l~~~l~ 70 (177)
.++++||++-|.+||+.|....... + +.+|-+||.+|.--+. ..--.++-++||.
T Consensus 77 p~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~-~~~~i~~Gl~fl~ 133 (785)
T 3s9v_A 77 PETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRT-GETQVQKGIEFFR 133 (785)
T ss_dssp HHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHccc-CHHHHHHHHHHHH
Confidence 6899999999999999987533222 3 7888888888876442 1112344455554
No 36
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=85.79 E-value=1.1 Score=41.59 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=38.8
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCC--hHHHHHHHHHHHHhCCCCccCHHHHHHHHHH
Q psy18133 14 LSKAVEFILSCCNFDGGFGSRPGSESH--AGLTYCCVGFLSITGHLHEIDADKLAWWLAE 71 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~pg~esh--~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~ 71 (177)
-.++++||++-|.+||+.|...+.... +-+|-+||.+|.--+. ..--.++-++||.+
T Consensus 55 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~ 113 (764)
T 3p5p_A 55 FPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKT-GHSQVQQGAEFIAE 113 (764)
T ss_dssp CHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 567999999999999999865432223 6788888887776442 12224556666653
No 37
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=85.27 E-value=1.2 Score=41.61 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=37.7
Q ss_pred HHHHHHHHhccCCCCCccCCCCCCCC--hHHHHHHHHHHHHhCCCCccCHHHHHHHHHH
Q psy18133 15 SKAVEFILSCCNFDGGFGSRPGSESH--AGLTYCCVGFLSITGHLHEIDADKLAWWLAE 71 (177)
Q Consensus 15 ~~~~~~I~scq~~dGGF~~~pg~esh--~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~ 71 (177)
.++++||++-|.+||+.|...+.... +.+|-+||.+|.--+. ..--.++-++||.+
T Consensus 104 p~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~ 161 (817)
T 3sdr_A 104 PQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNV-GDLQVEQGIEFIKS 161 (817)
T ss_dssp HHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 68999999999999999865432222 6788888888776442 11123455555553
No 38
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=85.09 E-value=1.2 Score=41.04 Aligned_cols=57 Identities=23% Similarity=0.156 Sum_probs=38.1
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCC--hHHHHHHHHHHHHhCCCCccCHHHHHHHHHH
Q psy18133 14 LSKAVEFILSCCNFDGGFGSRPGSESH--AGLTYCCVGFLSITGHLHEIDADKLAWWLAE 71 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~pg~esh--~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~ 71 (177)
-.++++||++-|.+||+.|...+.... +-+|-+||.+|.--+- ..-..++-+.||.+
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~rGl~fl~~ 110 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNL-FPHQCNKGITFFRE 110 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 367999999999999999864322222 6788888888776332 11224556666654
No 39
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=81.01 E-value=5.4 Score=34.15 Aligned_cols=108 Identities=8% Similarity=-0.064 Sum_probs=62.8
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCC---CC--c-----cC--HHHHHHHHHHcCCCCC-Ccc
Q psy18133 14 LSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGH---LH--E-----ID--ADKLAWWLAERGDHSS-DNL 80 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~---l~--~-----id--~~~l~~~l~~~Q~~~G-F~g 80 (177)
....|.-+..-|+.|| ..-.+-.+..|+.+|.-+.+ .+ . ++ .++++++|.+.|++|| |.
T Consensus 132 ~~~~v~kLl~~~~~~g-------~~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG- 203 (399)
T 2pmv_A 132 TLPIAVRFAKTLLANS-------SPFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG- 203 (399)
T ss_dssp HHHHHHHHHHHHHHCC-------SCCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS-
T ss_pred CHHHHHHHHHHHHccC-------CcccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc-
Confidence 3445555555556563 12246677777777777765 21 0 11 4678899999999999 83
Q ss_pred CCCcch-HHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHH
Q psy18133 81 QPSQLS-WYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALT 141 (177)
Q Consensus 81 r~~k~t-y~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ 141 (177)
|.|+ ==|+-+|...+.....+| +..+ ++ |..+ |+|+ ++..|.-.+=+|.
T Consensus 204 --n~yST~LA~QAL~~~~~~~~~~W-~c~~al~~l~~-q~~~-G~F~-------np~~taQilPaL~ 258 (399)
T 2pmv_A 204 --DIYSTGLAMQALSVTPEPSKKEW-NCKKTTDMILN-EIKQ-GKFH-------NPMSIAQILPSLK 258 (399)
T ss_dssp --SHHHHHHHHHHHHHCSSCCSSCC-CHHHHHHHHHH-HHTT-TTTC-------SHHHHHHHHHHHT
T ss_pred --ccccHHHHHHHHHhcCCCccccc-cHHHHHHHHHH-HhhC-CCcC-------CHHHHHHHHHHhc
Confidence 3332 234444444454322244 3332 44 7777 9996 5666666665554
No 40
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=77.89 E-value=6.9 Score=38.71 Aligned_cols=79 Identities=9% Similarity=-0.084 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCCC-CccCC-----Cc----chHHHHHHHhhhCCcccCCccchhh--------hcccCCCCCCccCCC
Q psy18133 63 DKLAWWLAERGDHSS-DNLQP-----SQ----LSWYNFVRAHFEGDFFSGRFCNRAS--------LVSLDVESGGISDRP 124 (177)
Q Consensus 63 ~~l~~~l~~~Q~~~G-F~gr~-----~k----~ty~a~a~l~lL~~~~~~~~~d~~~--------l~cq~~d~GGF~~~p 124 (177)
++.++|+.++|++|| |..-+ .. -|=+++-.|...... -.++... .+-|..+ |.|...-
T Consensus 986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~---~~v~~~~l~~a~~wL~~~Q~~d-G~f~~~g 1061 (1451)
T 4acq_A 986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAY---IFIDEAHITQALIWLSQRQKDN-GCFRSSG 1061 (1451)
T ss_dssp HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTT---SCCCTHHHHHHHHHHHHTEETT-TEECCCC
T ss_pred HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhh---cccCHHHHHHHHHHHHhhcccC-CcccccC
Confidence 467799999999999 76432 12 223345555554433 1233222 4578777 9997421
Q ss_pred ---------CCCCCHHHHHHHHHHHHhcCC
Q psy18133 125 ---------LDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 125 ---------~~~~d~~~T~~alasL~ll~~ 145 (177)
|.+.+.+-|.|+|.+|...+.
T Consensus 1062 ~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~ 1091 (1451)
T 4acq_A 1062 SLLNNAIKGGVEDEVTLSAYITIALLEIPL 1091 (1451)
T ss_dssp CCSCGGGCCSCSCHHHHHHHHHHHHHHTTC
T ss_pred cccchhhcCCCCCCccchHHHHHHHHHcCC
Confidence 224567889999999998876
No 41
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=77.47 E-value=1 Score=37.65 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=45.9
Q ss_pred HHHHHHHhccCCCCCccCC-----C--------CCCCChHHHHHHHHHHHHhCCCC---c--cCHHHHHHHHHHcCCCCC
Q psy18133 16 KAVEFILSCCNFDGGFGSR-----P--------GSESHAGLTYCCVGFLSITGHLH---E--IDADKLAWWLAERGDHSS 77 (177)
Q Consensus 16 ~~~~~I~scq~~dGGF~~~-----p--------g~esh~~~Ty~Al~~L~llg~l~---~--id~~~l~~~l~~~Q~~~G 77 (177)
.+.+.|++-|.++||+.-. + ....+...|...+..|.-+...+ . --.++.++||.+.|.++|
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 3578999999999999742 1 12356677888888876653211 1 124689999999999999
Q ss_pred -Ccc
Q psy18133 78 -DNL 80 (177)
Q Consensus 78 -F~g 80 (177)
|..
T Consensus 115 GWpq 118 (332)
T 1gxm_A 115 ALPQ 118 (332)
T ss_dssp CCBS
T ss_pred Cccc
Confidence 753
No 42
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=72.66 E-value=2.9 Score=35.90 Aligned_cols=66 Identities=14% Similarity=-0.016 Sum_probs=36.8
Q ss_pred HHHHHHHHHhccCC-CCCcc---CC--CCC---------CCChHHHHHHHHHHHHhCCCCccC------HHHHHHHHHHc
Q psy18133 14 LSKAVEFILSCCNF-DGGFG---SR--PGS---------ESHAGLTYCCVGFLSITGHLHEID------ADKLAWWLAER 72 (177)
Q Consensus 14 ~~~~~~~I~scq~~-dGGF~---~~--pg~---------esh~~~Ty~Al~~L~llg~l~~id------~~~l~~~l~~~ 72 (177)
.++.++||+++|.+ ||..- .+ .+. |.-.-.+.-++.++..|-.....+ +++.++||.+.
T Consensus 247 v~Rgi~~Ll~~Qe~~dGsw~rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~ 326 (408)
T 1r76_A 247 TNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTS 326 (408)
T ss_dssp HHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcccCCcccchhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHh
Confidence 56789999999998 88543 11 111 111112222333333333223322 68899999999
Q ss_pred CCCCC-Cc
Q psy18133 73 GDHSS-DN 79 (177)
Q Consensus 73 Q~~~G-F~ 79 (177)
|.++| +.
T Consensus 327 Q~~dg~w~ 334 (408)
T 1r76_A 327 VIRDRAWV 334 (408)
T ss_dssp CCCC----
T ss_pred hcCCCcee
Confidence 99998 65
No 43
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=61.72 E-value=7.8 Score=35.32 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=31.7
Q ss_pred hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 110 LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 110 l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
++-|+.| |||+..++..++.+-|-|++-+|+....
T Consensus 378 l~~q~~D-Gsfs~w~~~~~s~wLTAyV~~~l~~A~~ 412 (767)
T 4fxk_B 378 QQFRKAD-GSYAAWLSRDSSTWLTAFVLKVLSLAQE 412 (767)
T ss_dssp TTTBCTT-SCBBSSSSSCBCHHHHHHHHHHHHHTCS
T ss_pred HHhhcCC-CCcccCCCCCCCchhHHHHHHHHHHHHh
Confidence 5789998 9999999999999999999999998765
No 44
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=56.88 E-value=47 Score=30.76 Aligned_cols=120 Identities=21% Similarity=0.138 Sum_probs=75.2
Q ss_pred ccccCCCCh-hcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCC-CC--C
Q psy18133 3 QHPIGKLDA-INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDH-SS--D 78 (177)
Q Consensus 3 l~lL~~l~~-~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~-~G--F 78 (177)
++.|+.+.. +|-++ |...|..||+|..+|. +|.|++.- -+ | +++.+||.+.+.. +| =
T Consensus 203 lhslE~l~~~~d~~~----v~~~q~~~GS~~~SPs------aTAa~l~~---~~-----d-~~~~~YL~~~~~~~~g~VP 263 (785)
T 3s9v_A 203 LYSLEGLQEIVDWQK----IMKLQSKDGSFLSSPA------STAAVFMR---TG-----N-KKCLDFLNFVLKKFGNHVP 263 (785)
T ss_dssp GGGGGGCTTTCCHHH----HHTTCCTTSCBTTBHH------HHHHHHHH---HC-----C-HHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHhccccccHHH----HHhccCCCCCcccCHH------HHHHHHHh---CC-----C-hhHHHHHHHHHHhcCCCCC
Confidence 344444433 56666 4567888999999886 66666532 13 2 6788999877664 22 2
Q ss_pred ccCCCc--chHHHHHHHhhhCCcccCCccchhh---h----cccCCCCCCccCCC-CCCCCHHHHHHHHHHHHhcCCC
Q psy18133 79 NLQPSQ--LSWYNFVRAHFEGDFFSGRFCNRAS---L----VSLDVESGGISDRP-LDIPDPFHTLFGVAALTMLDPP 146 (177)
Q Consensus 79 ~gr~~k--~ty~a~a~l~lL~~~~~~~~~d~~~---l----~cq~~d~GGF~~~p-~~~~d~~~T~~alasL~ll~~~ 146 (177)
+..|.. -.-|.+-+|.-||... .+..+. + ++.. + .|.+..+ +..+|.+.|-.+.-.|...|.+
T Consensus 264 ~~yP~d~~e~l~lID~LqrLGi~~---hF~~EI~~~L~~i~~~~~-~-~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~ 336 (785)
T 3s9v_A 264 CHYPLDLFERLWAVDTVERLGIDR---HFKEEIKEALDYVYSHWD-E-RGIGWARENPVPDIDDTAMGLRILRLHGYN 336 (785)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCGG---GGHHHHHHHHHHHHTTCC-T-TCCCSSTTCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CcCCCcHHHHHHHHHHHHHcCCcc---ccHHHHHHHHHHHHHHhh-h-ccccccccCCCCCHHHHHHHHHHHHhcCCC
Confidence 333433 4558899999999762 222221 1 3333 2 3444433 3457999999999999999873
No 45
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=50.94 E-value=30 Score=31.98 Aligned_cols=106 Identities=23% Similarity=0.160 Sum_probs=70.2
Q ss_pred HHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCC-CC--CccCCCc--chHHHHHHHhh
Q psy18133 21 ILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDH-SS--DNLQPSQ--LSWYNFVRAHF 95 (177)
Q Consensus 21 I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~-~G--F~gr~~k--~ty~a~a~l~l 95 (177)
|...|..||+|..+|. +|.|++.- -+ | +++.+||.+.+.. +| =+..|.. -.-|.+-+|.-
T Consensus 194 ~~~~~~~~GS~~~SPs------aTAa~l~~---~~-----d-~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~Lqr 258 (764)
T 3p5p_A 194 IMRFQSKDGSFLSSPA------STACVLMN---TG-----D-EKCFTFLNNLLDKFGGCVPCMYSIDLLERLSLVDNIEH 258 (764)
T ss_dssp GGGGBCTTSCBTTBHH------HHHHHHHH---HC-----C-HHHHHHHHHHHHHHTSCCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCcccChH------HHHHHHHh---CC-----C-hhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHH
Confidence 6788888999999876 66666543 12 2 6788999877664 23 3444444 45689999999
Q ss_pred hCCcccCCccchhh-------hcccCCCCCCccC-CCCCCCCHHHHHHHHHHHHhcCCC
Q psy18133 96 EGDFFSGRFCNRAS-------LVSLDVESGGISD-RPLDIPDPFHTLFGVAALTMLDPP 146 (177)
Q Consensus 96 L~~~~~~~~~d~~~-------l~cq~~d~GGF~~-~p~~~~d~~~T~~alasL~ll~~~ 146 (177)
||... .+..+. -++... .|.+. +++..+|.+.|-.+.-.|...|.+
T Consensus 259 LGi~~---hF~~EI~~~L~~i~~~~~~--~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~ 312 (764)
T 3p5p_A 259 LGIGR---HFKQEIKGALDYVYRHWSE--RGIGWGRDSLVPDLNTTALGLRTLRMHGYN 312 (764)
T ss_dssp HTCGG---GGHHHHHHHHHHHHHTCCT--TCCCSSTTCSSCCHHHHHHHHHHHHHTTCC
T ss_pred cCCcc---ccHHHHHHHHHHHHHHhhh--cccccccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 99762 222221 233332 33443 355568999999999999999873
No 46
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=50.77 E-value=87 Score=28.75 Aligned_cols=120 Identities=18% Similarity=0.101 Sum_probs=74.0
Q ss_pred ccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCC-C--Cc
Q psy18133 3 QHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHS-S--DN 79 (177)
Q Consensus 3 l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~-G--F~ 79 (177)
++.|+.+..+|-+++ ...|..||+|..+|. +|.|++.- -+ | ++..+||.+..... | =+
T Consensus 179 lhslEgl~~~dw~~~----~~~q~~~GS~~~SPs------aTAa~l~~---~~-----d-~~~l~YL~~~v~k~~g~VP~ 239 (727)
T 3pya_A 179 LHSLEGMRDLDWEKL----LKLQSQDGSFLFSPS------STAFAFMQ---TR-----D-SNCLEYLRNAVKRFNGGVPN 239 (727)
T ss_dssp GGGGGGCCCCCHHHH----GGGCCTTSSBTTBHH------HHHHHHHH---HC-----C-HHHHHHHHHHHHHTTTCCCS
T ss_pred HHHHhcccccCHHHH----hcccCCCCCcccCHH------HHHHHHhc---CC-----C-HHHHHHHHHHHHHcCCCCCC
Confidence 344444444666664 455677999999876 66666532 22 2 67889998776642 2 23
Q ss_pred cCCCc--chHHHHHHHhhhCCcccCCccchhh---h----cccCCCCCCccCCC-CCCCCHHHHHHHHHHHHhcCCC
Q psy18133 80 LQPSQ--LSWYNFVRAHFEGDFFSGRFCNRAS---L----VSLDVESGGISDRP-LDIPDPFHTLFGVAALTMLDPP 146 (177)
Q Consensus 80 gr~~k--~ty~a~a~l~lL~~~~~~~~~d~~~---l----~cq~~d~GGF~~~p-~~~~d~~~T~~alasL~ll~~~ 146 (177)
..|.. ---|.+-+|.=||... .+..+. + ++.. + .|.+..+ ...+|.+.|-.+.-.|...|.+
T Consensus 240 ~yP~d~~e~L~lID~LqRLGIs~---hFe~EI~~~L~~i~~~~~-~-~g~~~~~~~~~~DL~~tAL~FRLLRqhGy~ 311 (727)
T 3pya_A 240 VFPVDLFEHIWIVDRLQRLGISR---YFEEEIKECLDYVHRYWT-D-NGICWARCSHVQDIDDTAMAFRLLRQHGYQ 311 (727)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCGG---GGHHHHHHHHHHHHHTCC-T-TCCCSSSSCSCCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCcHHHHHHHHHHHHHcCCcc---ccHHHHHHHHHHHHHHhh-h-cCcccccCCCCCCHHHHHHHHHHHHhCCCC
Confidence 33433 4558899998898762 222221 1 3433 2 3444333 3457999999999999999873
No 47
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=44.19 E-value=30 Score=34.56 Aligned_cols=68 Identities=10% Similarity=-0.052 Sum_probs=40.7
Q ss_pred HHHHHHHHHhccCCCCC-----ccCCCC------C--CC---ChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC
Q psy18133 14 LSKAVEFILSCCNFDGG-----FGSRPG------S--ES---HAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS 77 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGG-----F~~~pg------~--es---h~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G 77 (177)
.+++++.+.+....+|+ +=..+. . .+ .+-.|.+|+.++...++ ..+..++++||...|+..|
T Consensus 1205 a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~~--~~~~~~iv~wL~~qr~~~G 1282 (1676)
T 3cu7_A 1205 FRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKD--INYVNPVIKWLSEEQRYGG 1282 (1676)
T ss_dssp HHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCSSS
T ss_pred HHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhccCCCC
Confidence 66777777766553333 211110 0 12 34567777766666553 2345789999999988877
Q ss_pred -CccCCC
Q psy18133 78 -DNLQPS 83 (177)
Q Consensus 78 -F~gr~~ 83 (177)
|....+
T Consensus 1283 g~~STQd 1289 (1676)
T 3cu7_A 1283 GFYSTQD 1289 (1676)
T ss_dssp CCSTTTT
T ss_pred CccccHH
Confidence 875544
No 48
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=43.69 E-value=20 Score=33.45 Aligned_cols=61 Identities=13% Similarity=-0.028 Sum_probs=36.3
Q ss_pred cHHHHHHHHHhccC---CCCCccCCCCCCCChHHHHHHHHHHHHhCCC---CccCHHHHHHHHHHcCCCCC-Ccc
Q psy18133 13 NLSKAVEFILSCCN---FDGGFGSRPGSESHAGLTYCCVGFLSITGHL---HEIDADKLAWWLAERGDHSS-DNL 80 (177)
Q Consensus 13 ~~~~~~~~I~scq~---~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l---~~id~~~l~~~l~~~Q~~~G-F~g 80 (177)
..+++++-|++..+ .||..| .-.+-+-.|.+ | ++.... ...-....++||...|.+|| +..
T Consensus 55 ~~~~Lie~VK~~l~~~~~~g~~g---~~S~S~YDTAW-V---Amvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~ 122 (817)
T 3sdr_A 55 RAEVLVSEIKAMLNPAITGDGES---MITPSAYDTAW-V---ARVPAIDGSARPQFPQTVDWILKNQLKDGSWGI 122 (817)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCC---CCCCCHHHHHH-H---HTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSC
T ss_pred HHHHHHHHHHHHhccccCCCCCc---ccccCHHHhhH-H---heeecCCCCCCCCchHHHHHHHHccCCCCCCCC
Confidence 34567777776654 455122 12223445666 2 344332 23445889999999999999 754
No 49
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=43.21 E-value=34 Score=34.13 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=32.0
Q ss_pred hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCC
Q psy18133 110 LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDP 145 (177)
Q Consensus 110 l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~ 145 (177)
+.-|+.| |||+.+++.+++.+-|-|++-.|+.+.+
T Consensus 1056 l~~q~~d-Gsfs~w~~~~~s~wLTAyv~~~l~~A~~ 1090 (1661)
T 2b39_A 1056 LAFRQKS-SAYAAFQYRPPSTWLTAYVVKVFALAAN 1090 (1661)
T ss_dssp HTTBCTT-SCBCSSTTSCCCHHHHHHHHHHHHHHTT
T ss_pred HHhhcCC-CCccccCCCCCchhhhHHHHHHHHhhhh
Confidence 5688988 9999999999999999999999998876
No 50
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=27.01 E-value=13 Score=37.25 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred ChhcHHHHHHHHHh-ccCCCCCccCC------------CCCCCChHHHHHHHHHHHHhCCC-----C--ccCHHHHHHHH
Q psy18133 10 DAINLSKAVEFILS-CCNFDGGFGSR------------PGSESHAGLTYCCVGFLSITGHL-----H--EIDADKLAWWL 69 (177)
Q Consensus 10 ~~~~~~~~~~~I~s-cq~~dGGF~~~------------pg~esh~~~Ty~Al~~L~llg~l-----~--~id~~~l~~~l 69 (177)
+.....+.++|+.+ +|.+||.|... .+.+.++..|.+.+.+|.-.+.. . ....++.+.||
T Consensus 1080 d~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L 1159 (1642)
T 3prx_B 1080 SHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYL 1159 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 33446678999997 99999999542 22355677776666665544321 0 11245677777
Q ss_pred HHc
Q psy18133 70 AER 72 (177)
Q Consensus 70 ~~~ 72 (177)
.+.
T Consensus 1160 ~~~ 1162 (1642)
T 3prx_B 1160 LKK 1162 (1642)
T ss_dssp ---
T ss_pred HHh
Confidence 654
No 51
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=24.18 E-value=1.5e+02 Score=24.55 Aligned_cols=66 Identities=9% Similarity=-0.038 Sum_probs=36.9
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCC-ChHHHHHHHHHHHH-----hCCCCc--c-CHHHHHHHHHHcCCCCC-Cc
Q psy18133 14 LSKAVEFILSCCNFDGGFGSRPGSES-HAGLTYCCVGFLSI-----TGHLHE--I-DADKLAWWLAERGDHSS-DN 79 (177)
Q Consensus 14 ~~~~~~~I~scq~~dGGF~~~pg~es-h~~~Ty~Al~~L~l-----lg~l~~--i-d~~~l~~~l~~~Q~~~G-F~ 79 (177)
.+++++++.++|.+||-+-.....+. -.-++-.|+.+..+ +|-++. . -.++..+-|.++.++|| ..
T Consensus 265 ~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~ 340 (382)
T 3pmm_A 265 LDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELL 340 (382)
T ss_dssp HHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBC
T ss_pred HHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEe
Confidence 45788999999999987765433221 11222233333222 223321 1 24677788888777787 53
No 52
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=23.13 E-value=49 Score=23.13 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=37.2
Q ss_pred cHHHHHHHHHhccC-CCCCccC---------CCCCCCChHHHHHHHHHHHHhCCC----------CccCHHHHHHHHHHc
Q psy18133 13 NLSKAVEFILSCCN-FDGGFGS---------RPGSESHAGLTYCCVGFLSITGHL----------HEIDADKLAWWLAER 72 (177)
Q Consensus 13 ~~~~~~~~I~scq~-~dGGF~~---------~pg~esh~~~Ty~Al~~L~llg~l----------~~id~~~l~~~l~~~ 72 (177)
|.+++++||..++. .|-||-. ..+.++-..-....|..|.-+|-- +.=|+++.++||.+|
T Consensus 35 ~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 35 NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 79999999999863 2223321 111111122234567777777742 223899999999887
Q ss_pred C
Q psy18133 73 G 73 (177)
Q Consensus 73 Q 73 (177)
-
T Consensus 115 ~ 115 (118)
T 4ae4_A 115 A 115 (118)
T ss_dssp C
T ss_pred c
Confidence 5
No 53
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=21.30 E-value=38 Score=21.03 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=15.4
Q ss_pred CCChhcHHHHHHHHHhccC
Q psy18133 8 KLDAINLSKAVEFILSCCN 26 (177)
Q Consensus 8 ~l~~~~~~~~~~~I~scq~ 26 (177)
.|+..+++.+++||.+...
T Consensus 67 ~ls~~ei~~l~~yl~~~~~ 85 (89)
T 1c6r_A 67 TLDDDEIAAVAAYVYDQAS 85 (89)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcc
Confidence 5778889999999987654
Done!