RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18133
(177 letters)
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit;
Provisional.
Length = 316
Score = 164 bits (416), Expect = 2e-50
Identities = 80/181 (44%), Positives = 103/181 (56%), Gaps = 28/181 (15%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
+ +LD IN+ KAV++I+SC NFDGGFG PG ESHAG +CCVG L+ITG LH +D D L
Sbjct: 146 LKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLL 205
Query: 66 AWWLAERGDHSSD-NLQPSQL-----SWYNFV------RAHFEGDFFSGRFCNRASLVSL 113
WWL ER S N +P +L SW+ R H + ++ L
Sbjct: 206 GWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVH---------WIDKDKLAKF 256
Query: 114 -----DVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLN 168
D E+GGISDRP D D FHT FGVA L++L P + P+DP Y +P V+ R+
Sbjct: 257 ILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLL--GYPGLKPIDPAYALPVDVVNRIG 314
Query: 169 L 169
L
Sbjct: 315 L 315
Score = 39.7 bits (93), Expect = 3e-04
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
+GKLD ++ + V +++ C + GGFG G + H T V L++ L +DADK+
Sbjct: 50 LGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKV 109
Query: 66 AWWLA----ERGDHSSD 78
A ++A E G S D
Sbjct: 110 ASYVAGLQNEDGSFSGD 126
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II
(GGTase-II)_like proteins containing the protein
prenyltransferase (PTase) domain, beta subunit (alpha 6
- alpha 6 barrel fold). GGTase-IIs are a subgroup of the
protein prenyltransferase family of lipid-modifying
enzymes. PTases catalyze the carboxyl-terminal
lipidation of Ras, Rab, and several other cellular
signal transduction proteins, facilitating membrane
associations and specific protein-protein interactions.
Prenyltransferases employ a Zn2+ ion to alkylate a thiol
group catalyzing the formation of thioether linkages
between cysteine residues at or near the C-terminus of
protein acceptors and the C1 atom of isoprenoid lipids
(geranylgeranyl (20-carbon) in the case of GGTase-II ).
GGTase-II catalyzes alkylation of both cysteine residues
in Rab proteins containing carboxy-terminal "CC", "CXCX"
or "CXC" motifs. PTases are heterodimeric with both
alpha and beta subunits required for catalytic activity.
In contrast to other prenyltransferases, GGTas-II
requires an escort protein to bring the substrate
protein to the catalytic heterodimer and to escort the
geryanylgeranylated product to the membrane.
Length = 287
Score = 159 bits (404), Expect = 8e-49
Identities = 68/149 (45%), Positives = 90/149 (60%), Gaps = 14/149 (9%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
+GKLD I++ KAV+++LSC NFDGGFG RPG+ESHAG +CCVG L+I G L ID D+L
Sbjct: 142 LGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRL 201
Query: 66 AWWLAERGDHSSD-NLQPSQL-----SWYNFVRAHFEGDFFSGRFCNRASLVSL-----D 114
WWL ER S N +P +L SW+ G + N+ L + D
Sbjct: 202 GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRL---HWINKNKLKNFILACQD 258
Query: 115 VESGGISDRPLDIPDPFHTLFGVAALTML 143
E GG +DRP ++ D FHT FG+A L++L
Sbjct: 259 EEDGGFADRPGNMVDVFHTFFGLAGLSLL 287
Score = 38.4 bits (90), Expect = 7e-04
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 7 GKLDAINLSKAVEFILSC-CNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADK 64
G+L+ +N + +EF+ SC N DGGFG PG + H T + L++ L++ID +K
Sbjct: 44 GQLERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENK 102
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta
subunit (alpha 6 - alpha 6 barrel fold). The protein
prenyltransferase family of lipid-modifying enzymes
includes protein farnesyltransferase (FTase) and
geranylgeranyltransferase types I and II (GGTase-I and
GGTase-II). They catalyze the carboxyl-terminal
lipidation of Ras, Rab, and several other cellular
signal transduction proteins, facilitating membrane
associations and specific protein-protein interactions.
Prenyltransferases employ a Zn2+ ion to alkylate a thiol
group catalyzing the formation of thioether linkages
between the C1 atom of farnesyl (15-carbon by FTase) or
geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid
lipids and cysteine residues at or near the C-terminus
of protein acceptors. FTase and GGTase-I prenylate the
cysteine in the terminal sequence, "CAAX"; and GGTase-II
prenylates both cysteines in the "CC" (or "CXC")
terminal sequence. These enzymes are heterodimeric with
both alpha and beta subunits required for catalytic
activity. In contrast to other prenyltransferases,
GGTase-II does not recognize its protein acceptor
directly but requires Rab to complex with REP (Rab
escort protein) before prenylation can occur. These
enzymes are found exclusively in eukaryotes.
Length = 286
Score = 131 bits (333), Expect = 3e-38
Identities = 56/167 (33%), Positives = 77/167 (46%), Gaps = 51/167 (30%)
Query: 7 GKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLA 66
L I+ K +++ILSC N+DGGFG PG+ESH G T+C V L++ G L ID ++L
Sbjct: 141 NILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLL 200
Query: 67 WWLAERGDHSSDNLQPSQLSWYNFVRAHFEGDFFSGRFCNR-----------ASLVSLDV 115
WL ER QL+ G F+GR N+ ASL L
Sbjct: 201 RWLVER-----------QLA---------SGGGFNGR-PNKLVDTCYSFWVGASLKILGR 239
Query: 116 -------------------ESGGISDRPLDIPDPFHTLFGVAALTML 143
E GG SD+P PD +HT +G++ L++L
Sbjct: 240 LHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLSLL 286
Score = 39.1 bits (92), Expect = 6e-04
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 8 KLDAINLSKAVEFILSC-CNFDGGFGSRPGSESHAGLTYCCVGFLSITGH--LHEIDADK 64
LD N + ++FI SC N DGGFG PG + H TY V L+I G L ID +K
Sbjct: 43 DLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREK 102
Query: 65 LAWWL 69
+ +L
Sbjct: 103 IYKFL 107
Score = 36.0 bits (84), Expect = 0.005
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 6 IGKLDAINLSKAVEFILSCCN-FDGGFGSRPGSES---HAGLTYCCVGFLSI 53
+G+L I+ K E+ILSC GGF +PG H TY + LS+
Sbjct: 237 LGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYH---TYYGLSGLSL 285
>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational
modification, protein turnover, chaperones].
Length = 342
Score = 111 bits (279), Expect = 6e-30
Identities = 61/177 (34%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEI-DADK 64
+G LD AV+++ C N++GGFG P +E+HAG T+C + L++ G L ++ D +K
Sbjct: 168 LGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEK 227
Query: 65 LAWWLAERGDHSSDNLQ--PSQL-----SWYNFVRAHFEG--DFFSGRFCNRASLVSLDV 115
L WLAER SS L ++L S++ G DF + L
Sbjct: 228 LIRWLAERQL-SSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQE 286
Query: 116 ESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQ 172
SGG SDRP + PD +HT FG+A L++++ + PVDP YC+P+ V +
Sbjct: 287 TSGGFSDRPGEEPDVYHTCFGLAGLSLIE--YKYLNPVDPIYCLPQEVTNKFKKYFC 341
Score = 34.7 bits (80), Expect = 0.016
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 16 KAVEFILSCCNFDGGFGSRPGSESHAGLTY---CCVGFLSITGHLHEIDADKLAWWL 69
+ + F+L C GGFG PG +SH T + L L ID D LA ++
Sbjct: 79 RKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFI 135
Score = 32.8 bits (75), Expect = 0.063
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 4 HPIGKLDAINLSKAVEFILSCCNFD-GGFGSRPGSES 39
+GKLD IN + ++IL C GGF RPG E
Sbjct: 263 AILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEP 299
>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I
(GGTase-I)-like proteins containing the protein
prenyltransferase (PTase) domain, beta subunit (alpha 6
- alpha 6 barrel fold). GGTase-I s are a subgroup of the
protein prenyltransferase family of lipid-modifying
enzymes PTases catalyze the carboxyl-terminal lipidation
of Ras, Rab, and several other cellular signal
transduction proteins, facilitating membrane
associations and specific protein-protein interactions.
Prenyltransferases employ a Zn2+ ion to alkylate a thiol
group catalyzing the formation of thioether linkages
between cysteine residues at or near the C-terminus of
protein acceptors and the C1 atom of isoprenoid lipids
(geranylgeranyl (20-carbon) in the case of GGTase-I ).
GGTase-I prenylates the cysteine in the terminal
sequence, "CAAX" when X is Leu or Phe. Substrates for
GTTase-I include the gamma subunit of neural G-proteins
and several Ras-related G-proteins. PTases are
heterodimeric with both alpha and beta subunits required
for catalytic activity.
Length = 307
Score = 88.9 bits (221), Expect = 9e-22
Identities = 47/164 (28%), Positives = 64/164 (39%), Gaps = 53/164 (32%)
Query: 12 INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADK---LAWW 68
I+ K +++I S ++DGGFG PG ESH G T+C + LS+ G L E+ L W
Sbjct: 165 IDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRW 224
Query: 69 LAERGDHSSDNLQPSQLSWYNFVRAHFEGDFFSGR----------FCNRASLVSLDVES- 117
L R G F+GR F ASL LD
Sbjct: 225 LVHR---------------------QVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQL 263
Query: 118 ------------------GGISDRPLDIPDPFHTLFGVAALTML 143
GG + P PDP H+ G+AAL+++
Sbjct: 264 IDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307
Score = 27.6 bits (62), Expect = 3.2
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 6 IGKLDAINLSKAVEFILSCCN-FDGGFGSRPGSES---HAGLTYCCVGFL 51
+ I+ K ++LS GGF P S H+ L + +
Sbjct: 258 LDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene
cyclases, protein prenyltransferases beta subunit, two
broadly specific proteinase inhibitors
alpha2-macroglobulin (alpha (2)-M) and pregnancy zone
protein (PZP) and, the C3 C4 and C5 components of
vertebrate complement. Class II terpene cyclases include
squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase
(OSQCY), these integral membrane proteins catalyze a
cationic cyclization cascade converting linear
triterpenes to fused ring compounds. The protein
prenyltransferases include protein farnesyltransferase
(FTase) and geranylgeranyltransferase types I and II
(GGTase-I and GGTase-II) which catalyze the
carboxyl-terminal lipidation of Ras, Rab, and several
other cellular signal transduction proteins,
facilitating membrane associations and specific
protein-protein interactions. Alpha (2)-M is a major
carrier protein in serum and involved in the
immobilization and entrapment of proteases. PZP is a
pregnancy associated protein. Alpha (2)-M and PZP are
known to bind to and, may modulate, the activity of
placental protein-14 in T-cell growth and cytokine
production thereby protecting the allogeneic fetus from
attack by the maternal immune system.
Length = 300
Score = 86.8 bits (215), Expect = 5e-21
Identities = 42/147 (28%), Positives = 58/147 (39%), Gaps = 17/147 (11%)
Query: 10 DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWL 69
+ KA++++LSC N+DGGFG PG ESH T C L++ G L DA K WL
Sbjct: 158 PDPLIEKALDYLLSCQNYDGGFG--PGGESHGYGTACAAAALALLGDLDSPDAKKALRWL 215
Query: 70 AERGDHSSDNLQPSQLSWYNFVRA-------------HFEGDFFSGRFCNRASLVSLDVE 116
R + + GD L+S E
Sbjct: 216 LSR-QRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEK-LVKWLLSQQNE 273
Query: 117 SGGISDRPLDIPDPFHTLFGVAALTML 143
GG S +P D HT+F + AL++
Sbjct: 274 DGGFSSKPGKSYDTQHTVFALLALSLY 300
Score = 43.7 bits (103), Expect = 2e-05
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 4 HPIGKLDAINLSKAVEFILSCCNFDGGFGS-------RPGSESHAGLTYCCVGFLSITGH 56
+D I+L++A+ ++LS N DGGF G ES LT + L++ G
Sbjct: 96 GDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGK 155
Query: 57 LHE-IDADKLAWWLAER 72
L +K +L
Sbjct: 156 LDPDPLIEKALDYLLSC 172
Score = 39.5 bits (92), Expect = 5e-04
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGS-ESHAGLTYCCVGFLSITGHLHEIDADK 64
I N+ K ++ +LS DGGF G+ LT + L + G +D
Sbjct: 46 IRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRID 105
Query: 65 LA 66
LA
Sbjct: 106 LA 107
>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins
containing the protein prenyltransferase (PTase) domain,
beta subunit (alpha 6 - alpha 6 barrel fold). FTases are
a subgroup of PTase family of lipid-modifying enzymes.
PTases catalyze the carboxyl-terminal lipidation of Ras,
Rab, and several other cellular signal transduction
proteins, facilitating membrane associations and
specific protein-protein interactions. These proteins
are heterodimers of alpha and beta subunits. Both
subunits are required for catalytic activity.
Prenyltransferases employ a Zn2+ ion to alkylate a thiol
group catalyzing the formation of thioether linkages
between cysteine residues at or near the C-terminus of
protein acceptors and the C1 atom of isoprenoid lipids.
Ftase attaches a 15-carbon farnesyl group to the
cysteine within the C-terminal CaaX motif of substrate
proteins when X is Ala, Met, Ser, Cys or Gln. Protein
farnesylation has been shown to play critical roles in a
variety of cellular processes including Ras/mitogen
activated protein kinase signaling pathways in mammals
and, abscisic acid signal transduction in Arabidopsis.
Length = 299
Score = 68.0 bits (167), Expect = 4e-14
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 13 NLSKAV-EFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAE 71
L + V E+ILSC ++GGFG PG+E+H G T+C + L+I G ++D + L WL
Sbjct: 146 ELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVA 205
Query: 72 R 72
R
Sbjct: 206 R 206
Score = 38.8 bits (91), Expect = 6e-04
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 9 LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITG---HLHEIDADKL 65
LD + F+ C N GGFG PG H TY V L+I G ID + L
Sbjct: 44 LDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREAL 103
Query: 66 AWWL 69
+L
Sbjct: 104 YKFL 107
Score = 33.0 bits (76), Expect = 0.057
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 9 LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWW 68
D I+ +F+LS DG F G E TYC + S+ L + + +A +
Sbjct: 95 YDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEY 154
Query: 69 LA 70
+
Sbjct: 155 IL 156
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase
repeat.
Length = 44
Score = 59.9 bits (146), Expect = 5e-13
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 12 INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITG 55
I+ K V+++LSC N DGGFG RPG ES TYC + L++ G
Sbjct: 1 IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44
Score = 32.9 bits (76), Expect = 0.008
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 116 ESGGISDRPLDIPDPFHTLFGVAALTMLD 144
GG RP D ++T +AAL +L
Sbjct: 16 PDGGFGGRPGGESDTYYTYCALAALALLG 44
>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta.
Length = 439
Score = 49.4 bits (118), Expect = 2e-07
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 19 EFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAER 72
++ILSC ++GG G PG+E+H G T+C + + + + +D L W+ R
Sbjct: 198 DYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFR 251
Score = 35.1 bits (81), Expect = 0.013
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 15 SKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFL-SITGH--LHEIDADKLAWWLAE 71
+ ++F+ C + +GG+G PG H TY V L +I G L I+ +KL +L
Sbjct: 95 NDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLR 154
Query: 72 RGDHS 76
D S
Sbjct: 155 MKDPS 159
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like.
Length = 112
Score = 45.8 bits (109), Expect = 5e-07
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 18 VEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGD 74
V+++LS N DGG+G+ G S +T + L+ G D K WL + +
Sbjct: 1 VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETP--DVKKALAWLLSQQN 55
Score = 42.7 bits (101), Expect = 8e-06
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 16 KAVEFILSCCNFDGGFGSRPGSESHAGL-TYCCVGFLSITGHLHEIDA-DKLAWWLA 70
KA+ ++LS N DGGFG P S S T + L + G + +A +K +L
Sbjct: 45 KALAWLLSQQNPDGGFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLL 101
Score = 33.5 bits (77), Expect = 0.013
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 7 GKLDAINLSKAVEFILSCCNFDGGFGS 33
G+ D + KAV+++LSC N DGGFG
Sbjct: 86 GEPDDEAVEKAVDYLLSCQNPDGGFGY 112
>gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase. This model
identifies 2,3-oxidosqualene cyclases from Stigmatella
aurantiaca which produces cycloartenol , and Gemmata
obscuriglobus and Methylococcus capsulatus which each
produce the closely related sterol, lanosterol.
Length = 634
Score = 32.2 bits (73), Expect = 0.14
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 5 PIGKLDAINLSKAVEFILSCCNFDGGFGS 33
P ++ L AVEFILS N DGGFG+
Sbjct: 393 PEERVPQARLQDAVEFILSRQNEDGGFGT 421
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like.
Length = 109
Score = 28.8 bits (65), Expect = 0.57
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 9 LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITG 55
L+AI KAVE++L DGGFG G +++ TY + L I G
Sbjct: 45 LEAIK--KAVEWLLDQQQEDGGFGYDGGEYAYSTATY--IVALLIYG 87
>gnl|CDD|183940 PRK13276, PRK13276, cell wall biosynthesis protein ScdA;
Provisional.
Length = 224
Score = 29.4 bits (66), Expect = 0.89
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 40 HAGLTYCCVGFLSI---TGHLHEIDADKLAWWLAE-RGDHSSDNLQPSQLS 86
G+ +CC G +SI + +D ++L L + ++ +L P L+
Sbjct: 24 SVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLN 74
>gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 535
Score = 28.5 bits (64), Expect = 2.1
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 108 ASLVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRY 162
SL+ V G SD P++ DP+ ++ AA+T TP + P + R
Sbjct: 421 RSLLKAGVPLAGGSDAPVEPYDPWLGIY--AAVTR---KTPGGRVLGPEERLTRE 470
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 27.5 bits (62), Expect = 4.4
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 57 LHEIDADKLAWWLAERGDHSSDNLQPSQLSWYNFVRAH 94
L D L ++LA +SD + +W FVR
Sbjct: 349 LERYPPDYLRYYLAANAPENSD----TDFTWEEFVRRV 382
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II
terpene cyclases that have an alpha 6 - alpha 6 barrel
fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene
cyclase (OSQCY) are integral membrane proteins that
catalyze a cationic cyclization cascade converting
linear triterpenes to fused ring compounds. Bacterial
SQCY catalyzes the convertion of squalene to hopene or
diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide
of squalene to compounds such as, lanosterol (a
metabolic precursor of cholesterol and steroid hormones)
in mammals and fungi or, cycloartenol in plants.
Deletion of a single glycine residue of Alicyclobacillus
acidocaldarius SQCY alters its substrate specificity
into that of eukaryotic OSQCY. Both enzymes have a
second minor domain, which forms an alpha-alpha barrel
that is inserted into the major domain. This group also
contains SQCY-like archael sequences and some bacterial
SQCY's which lack this minor domain.
Length = 348
Score = 27.2 bits (61), Expect = 4.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 16 KAVEFILSCCNFDGGFG 32
KA +++LS N DGG+G
Sbjct: 243 KACDWLLSKQNPDGGWG 259
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases. This
family of enzymes catalyzes the cyclization of the
triterpenes squalene or 2-3-oxidosqualene to a variety
of products including hopene , lanosterol ,
cycloartenol, amyrin, lupeol and isomultiflorenol.
Length = 621
Score = 26.6 bits (59), Expect = 8.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 15 SKAVEFILSCCNFDGGFG 32
KA +++LS DGG+G
Sbjct: 512 QKACDWLLSRQMPDGGWG 529
>gnl|CDD|115257 pfam06587, DUF1137, Protein of unknown function (DUF1137). This
family consists of several hypothetical proteins
specific to Chlamydia species. The function of this
family is unknown.
Length = 159
Score = 26.0 bits (57), Expect = 8.8
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 44 TYCCVGFLS-ITGHLHEIDADKLAWWLAERGDHSSDNLQPSQLSWYN 89
+Y C LS ++GH+ A+K ++ RG+ N Q LS Y+
Sbjct: 85 SYHCKELLSHLSGHIQTQTAEKAMFF---RGNGGLLNYQDYSLSVYD 128
>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found
in class II terpene cyclases that have an alpha 6 -
alpha 6 barrel fold. Squalene cyclase (SQCY) and
2,3-oxidosqualene cyclase (OSQCY) are integral membrane
proteins that catalyze a cationic cyclization cascade
converting linear triterpenes to fused ring compounds.
This group contains bacterial SQCY which catalyzes the
convertion of squalene to hopene or diplopterol and
eukaryotic OSQCY which transforms the 2,3-epoxide of
squalene to compounds such as, lanosterol in mammals and
fungi or, cycloartenol in plants. Deletion of a single
glycine residue of Alicyclobacillus acidocaldarius SQCY
alters its substrate specificity into that of eukaryotic
OSQCY. Both enzymes have a second minor domain, which
forms an alpha-alpha barrel that is inserted into the
major domain.
Length = 634
Score = 26.4 bits (59), Expect = 9.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 16 KAVEFILSCCNFDGGFG 32
KA +F+LS N DGG+G
Sbjct: 529 KACDFLLSKQNPDGGWG 545
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.142 0.464
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,419,062
Number of extensions: 862813
Number of successful extensions: 743
Number of sequences better than 10.0: 1
Number of HSP's gapped: 719
Number of HSP's successfully gapped: 44
Length of query: 177
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 86
Effective length of database: 6,901,388
Effective search space: 593519368
Effective search space used: 593519368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)