RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18133
(177 letters)
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta
subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 325
Score = 139 bits (351), Expect = 3e-41
Identities = 82/177 (46%), Positives = 108/177 (61%), Gaps = 10/177 (5%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
+GKLDAIN+ KA+EF+LSC NFDGGFG RPGSESHAG YCC GFL+IT LH++++D L
Sbjct: 150 LGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLL 209
Query: 66 AWWLAER-----GDHSSDNLQPSQL-SWYNFVRAHFEG--DFFSGRFCNRASLVSLDVES 117
WWL ER G + P SW+ G + L D E+
Sbjct: 210 GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEET 269
Query: 118 GGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQRL 174
GG +DRP D+ DPFHTLFG+A L++L + PV P +CMP V++R+N+ P+ +
Sbjct: 270 GGFADRPGDMVDPFHTLFGIAGLSLLG--EEQIKPVSPVFCMPEEVLQRVNVQPELV 324
Score = 54.6 bits (131), Expect = 5e-10
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
+G+L +N + + FI SC + GG + G + H T V L++ +H I+ DK+
Sbjct: 54 MGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKV 113
Query: 66 AWWL 69
++
Sbjct: 114 VAYV 117
Score = 45.8 bits (108), Expect = 7e-07
Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 7/146 (4%)
Query: 10 DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWL 69
D + L K ++I S + + Y + + + G LH ++ +++ ++
Sbjct: 10 DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFI 69
Query: 70 AER-----GDHSSDNLQPSQLSWYNFVRA--HFEGDFFSGRFCNRASLVSLDVESGGISD 122
G +S P L + V+ ++ A + SL E G +
Sbjct: 70 KSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAG 129
Query: 123 RPLDIPDPFHTLFGVAALTMLDPPTP 148
D + VA L +L
Sbjct: 130 DIWGEIDTRFSFCAVATLALLGKLDA 155
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 346
Score = 128 bits (324), Expect = 4e-37
Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 14/175 (8%)
Query: 4 HPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEI--- 60
+ + +++ KA+ +I ++D G G ESH G T+C + L + G L E+
Sbjct: 166 YMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSE 225
Query: 61 -DADKLAWWLAER---GDHSSDNLQPSQLSWYNFVRAHF----EGDFFSGRFCNRASLVS 112
+ +++ W R G H N +P + +V A + + L +
Sbjct: 226 KELNRIKRWCIMRQQNGYHGRPN-KPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILST 284
Query: 113 LDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERL 167
D GG + P PD H FG+ L++++ + V P + ERL
Sbjct: 285 QDRLVGGFAKWPDSHPDALHAYFGICGLSLME--ESGICKVHPALNVSTRTSERL 337
Score = 33.4 bits (76), Expect = 0.009
Identities = 30/186 (16%), Positives = 51/186 (27%), Gaps = 59/186 (31%)
Query: 6 IGKLDAINLSKAVEFILSC-------------CNFDG-------------GFGSRPGSES 39
+ LD +N +E+I S C F G + P
Sbjct: 44 LDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSG 103
Query: 40 HAGLTYCCVGFLSITGH-LHEIDADKLAWWLAERGDHSSDNLQPSQLSWYNFVRAHFEGD 98
H +TY + L I G L +D + L +F +
Sbjct: 104 HIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDG-----------SFCAVPEGSE 152
Query: 99 FFSGRFCNRASLVS--------LDVES------------GGISDRPLDIPDPFHTLFGVA 138
RF AS + +D++ G++ T G+A
Sbjct: 153 -NDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIA 211
Query: 139 ALTMLD 144
+L ++
Sbjct: 212 SLCLMG 217
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 120 bits (302), Expect = 1e-33
Identities = 37/206 (17%), Positives = 67/206 (32%), Gaps = 36/206 (17%)
Query: 6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
+ E+I C N++GG G PG E+H G T+C + L I ++ L
Sbjct: 194 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 253
Query: 66 AWWLAERGDHSSDNLQ--PSQL-----SWY---------------NFVRAHFEGDFFSGR 103
W+ R Q ++L S++ F +
Sbjct: 254 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 313
Query: 104 FCNRASLVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLD--------------PPTPD 149
L+ +GG+ D+P D +HT + ++ L++ P
Sbjct: 314 ALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENA 373
Query: 150 VLPVDPTYCMPRYVIERLNLNPQRLP 175
+ P P Y + + + + P
Sbjct: 374 LQPTHPVYNIGPDKVIQATTYFLQKP 399
Score = 47.7 bits (113), Expect = 1e-07
Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 12/146 (8%)
Query: 9 LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWW 68
D IN K ++++ S DG F G E YC S+T + + A W
Sbjct: 149 YDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEW 208
Query: 69 LA-----ERGDHSSDNLQPSQLSWYNFVRAHFEGDFFSGRFCNRASLVSLDVE-----SG 118
+A E G ++ + + A N SL+ G
Sbjct: 209 IARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERS--LNLKSLLQWVTSRQMRFEG 266
Query: 119 GISDRPLDIPDPFHTLFGVAALTMLD 144
G R + D ++ + L +L
Sbjct: 267 GFQGRCNKLVDGCYSFWQAGLLPLLH 292
Score = 45.4 bits (107), Expect = 1e-06
Identities = 27/147 (18%), Positives = 41/147 (27%), Gaps = 44/147 (29%)
Query: 8 KLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITG---HLHEIDADK 64
+ I + +F+ C + +GGFG PG H TY V L I G I+ +K
Sbjct: 97 PIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREK 156
Query: 65 LAWWLAERGDHSSDNLQPSQLSWYNFVRAHFEGDFFSGRFCNRASLVSLDVESGGISDRP 124
L +L SL G
Sbjct: 157 LLQYLY-----------------------------------------SLKQPDGSFLMHV 175
Query: 125 LDIPDPFHTLFGVAALTMLDPPTPDVL 151
D + ++ + TPD+
Sbjct: 176 GGEVDVRSAYCAASVASLTNIITPDLF 202
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase
{Alicyclobacillus acidocaldarius [TaxId: 405212]}
Length = 352
Score = 34.7 bits (79), Expect = 0.003
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 10/73 (13%)
Query: 10 DAINLSKAVEFILSCCNFDGGFGSRPGS----------ESHAGLTYCCVGFLSITGHLHE 59
+ KA++++ N DGG+G S S T + L G
Sbjct: 234 REPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAES 293
Query: 60 IDADKLAWWLAER 72
A + +L E
Sbjct: 294 EAARRGVQYLVET 306
>g1k2x.1 d.153.1.5 (A:,B:) Glycosylasparaginase
(aspartylglucosaminidase, AGA) {Escherichia coli
[TaxId: 562]}
Length = 291
Score = 29.3 bits (65), Expect = 0.22
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 9 LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCV 48
LD + ++AV + C F+ G G+ + L C +
Sbjct: 49 LDVV--TEAVRLLEECPLFNAGIGAVFTRDETHELDACVM 86
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 448
Score = 29.3 bits (65), Expect = 0.27
Identities = 11/46 (23%), Positives = 15/46 (32%)
Query: 1 MVQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYC 46
H + L AV +L+ N DGGF + L
Sbjct: 186 KCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELL 231
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 25.1 bits (54), Expect = 4.3
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 136 GVAALTMLDPPTPDV 150
G LDPP +V
Sbjct: 11 GTLTTNQLDPPRKEV 25
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal
domain {Thermoanaerobacterium thermosaccharolyticum
[TaxId: 1517]}
Length = 397
Score = 24.7 bits (53), Expect = 8.0
Identities = 8/87 (9%), Positives = 23/87 (26%), Gaps = 9/87 (10%)
Query: 16 KAVEFILSCCNFDGGFGSRP---GSESHAGLTYCCVGFLSITGHLHEID------ADKLA 66
++++++ +G G G+ I + + LA
Sbjct: 76 RSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYDLYDSLVKPLA 135
Query: 67 WWLAERGDHSSDNLQPSQLSWYNFVRA 93
++ + G + + A
Sbjct: 136 DFIIKIGPKTGQERWEEIGGYSPATMA 162
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.142 0.464
Gapped
Lambda K H
0.267 0.0525 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 724,944
Number of extensions: 32425
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 15
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)