BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18137
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 489 bits (1258), Expect = e-139, Method: Compositional matrix adjust.
Identities = 232/287 (80%), Positives = 263/287 (91%)
Query: 34 RRRGGISAEPVSEEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMF 93
RRRG ISAE +EEDA SYV+KV+PKDYKTMAAL+KAI KNVLFSHLD+N RSDIFDAMF
Sbjct: 2 RRRGAISAEVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMF 61
Query: 94 PVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAAT 153
PV+ + GE++I QGDEGDNFYVIDQGE++VYVNNE TSVGEGGSFGELALIYGTPRAAT
Sbjct: 62 PVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAAT 121
Query: 154 VRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPV 213
V+AKT+VKLWG+DRDSYRRILMGST+RKRK+YEEFLS+VSILESL+KWERLTVAD+LEPV
Sbjct: 122 VKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPV 181
Query: 214 SFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRP 273
F+D + IV QG+PGD+F+II+EG+A VLQ E E VEVG+LGPSDYFGEIALL++RP
Sbjct: 182 QFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRP 241
Query: 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNSFVSLSV 320
RAATVVA+GPLKCVKLDR RFERVLGPC+DILKRNI QYNSFVSLSV
Sbjct: 242 RAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNSFVSLSV 288
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 488 bits (1255), Expect = e-138, Method: Compositional matrix adjust.
Identities = 231/287 (80%), Positives = 263/287 (91%)
Query: 34 RRRGGISAEPVSEEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMF 93
RRRG ISAE +EEDA SYV+KV+PKDYKTMAAL+KAI KNVLFSHLD+N RSDIFDAMF
Sbjct: 4 RRRGAISAEVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMF 63
Query: 94 PVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAAT 153
PV+ + GE++I QGDEGDNFYVIDQGE++VYVNNE TSVGEGGSFGELALIYGTPRAAT
Sbjct: 64 PVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAAT 123
Query: 154 VRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPV 213
V+AKT+VKLWG+DRDSYRRILMGST+RKRK+YEEFLS+VSILESL+KWERLTVAD+LEPV
Sbjct: 124 VKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPV 183
Query: 214 SFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRP 273
F+D + IV QG+PGD+F+II+EG+A VLQ E E VEVG+LGPSDYFGEIALL++RP
Sbjct: 184 QFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRP 243
Query: 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNSFVSLSV 320
+AATVVA+GPLKCVKLDR RFERVLGPC+DILKRNI QYNSFVSLSV
Sbjct: 244 KAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNSFVSLSV 290
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 485 bits (1249), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/312 (75%), Positives = 270/312 (86%), Gaps = 1/312 (0%)
Query: 10 KLKATSPEETEDLSPLPSQGQQSARRR-GGISAEPVSEEDATSYVKKVVPKDYKTMAALS 68
K + S E++SP P ARRR GG+SAE +EEDA SYV+KV+PKDYKTM AL+
Sbjct: 70 KSNSQSDSHDEEVSPTPPNPVVKARRRRGGVSAEVYTEEDAVSYVRKVIPKDYKTMTALA 129
Query: 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128
KAI+KNVLF+HLD+N RSDIFDAMFPV + GE++I QG+EGDNFYV+DQGEV+VYVN E
Sbjct: 130 KAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGE 189
Query: 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEF 188
VT++ EGGSFGELALIYGTPRAATV+AKTD+KLWG+DRDSYRRILMGST+RKRK+YEEF
Sbjct: 190 WVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEF 249
Query: 189 LSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEE 248
LS+VSILESLEKWERLTVAD+LEPV F+D E IV QG+PGDDFYII EGTA VLQ
Sbjct: 250 LSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPN 309
Query: 249 ESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRN 308
E VEVG+LGPSDYFGEIALLL+RPRAATVVA+GPLKCVKLDR RFERVLGPC++ILKRN
Sbjct: 310 EEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRN 369
Query: 309 ITQYNSFVSLSV 320
I +YNSF+SL+V
Sbjct: 370 IQRYNSFISLTV 381
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 482 bits (1240), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/283 (80%), Positives = 259/283 (91%)
Query: 35 RRGGISAEPVSEEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFP 94
RRG ISAE +EEDA SYV+KV+PKDYKTMAAL+KAI KNVLFSHLD+N RSDIFDAMFP
Sbjct: 1 RRGAISAEVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFP 60
Query: 95 VNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATV 154
V+ + GE++I QGDEGDNFYVIDQGE++VYVNNE TSVGEGGSFGELALIYGTPRAATV
Sbjct: 61 VSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATV 120
Query: 155 RAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVS 214
+AKT+VKLWG+DRDSYRRILMGST+RKRK+YEEFLS+VSILESL+KWERLTVAD+LEPV
Sbjct: 121 KAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQ 180
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPR 274
F+D + IV QG+PGD+F+II+EG+A VLQ E E VEVG+LGPSDYFGEIALL++RPR
Sbjct: 181 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPR 240
Query: 275 AATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNSFVS 317
AATVVA+GPLKCVKLDR RFERVLGPC+DILKRNI QYNSFVS
Sbjct: 241 AATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNSFVS 283
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 269 bits (688), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 125/152 (82%), Positives = 141/152 (92%)
Query: 34 RRRGGISAEPVSEEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMF 93
RRRG ISAE +EEDA SYV+KV+PKDYKTMAAL+KAI KNVLFSHLD+N RSDIFDAMF
Sbjct: 3 RRRGAISAEVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMF 62
Query: 94 PVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAAT 153
PV+ + GE++I QGDEGDNFYVIDQGE++VYVNNE TSVGEGGSFGELALIYGTPRAAT
Sbjct: 63 PVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAAT 122
Query: 154 VRAKTDVKLWGLDRDSYRRILMGSTIRKRKLY 185
V+AKT+VKLWG+DRDSYRRILMGST+RKRK+Y
Sbjct: 123 VKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 154
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 194 ILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVE 253
+ L+ ER + D++ PVSF E +++QG GD+FY+I +G V N E
Sbjct: 45 LFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN---EWATS 101
Query: 254 VGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVL 298
VG+ G FGE+AL+ PRAATV AK +K +DR + R+L
Sbjct: 102 VGEGGS---FGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 143
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 125/159 (78%), Positives = 143/159 (89%)
Query: 26 PSQGQQSARRRGGISAEPVSEEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTR 85
P+ + RRRG ISAE +EEDA SYV+KV+PKDYKTMAAL+KAI KNVLFSHLD+N R
Sbjct: 2 PNPVVKGRRRRGAISAEVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNER 61
Query: 86 SDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALI 145
SDIFDAMFPV+ + GE++I QGDEGDNFYVIDQGE++VYVNNE TSVGEGGSFGELALI
Sbjct: 62 SDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALI 121
Query: 146 YGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKL 184
YGTPRAATV+AKT+VKLWG+DRDSYRRILMGST+RKRK+
Sbjct: 122 YGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 160
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 6/133 (4%)
Query: 166 DRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQG 225
D SY R ++ + + + + + L+ ER + D++ PVSF E +++QG
Sbjct: 24 DAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQG 83
Query: 226 QPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLK 285
GD+FY+I +G V N E VG+ G FGE+AL+ PRAATV AK +K
Sbjct: 84 DEGDNFYVIDQGEMDVYVNN---EWATSVGEGGS---FGELALIYGTPRAATVKAKTNVK 137
Query: 286 CVKLDRARFERVL 298
+DR + R+L
Sbjct: 138 LWGIDRDSYRRIL 150
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 171/291 (58%), Gaps = 15/291 (5%)
Query: 35 RRGGISAEPVS----EEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFD 90
RR + AE + E+DA S + + PK L +A +LF +LD S + D
Sbjct: 109 RRASVCAEAYNPDEEEDDAESRI--IHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLD 166
Query: 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE----LVTSVGEGGSFGELALIY 146
AMF GE +I QGD+GDNFYVID+G ++YV + V + GSFGELAL+Y
Sbjct: 167 AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY 226
Query: 147 GTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTV 206
TP+AAT+ A + LWGLDR ++RRI++ + +KRK+YE F+ + L+SLE ERL V
Sbjct: 227 NTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKV 286
Query: 207 ADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVL-----QNTVEEESPVEVGKLGPSD 261
D + + D E I+ QG D F+I+ G + ++ VEE VE+ +
Sbjct: 287 VDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQ 346
Query: 262 YFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQY 312
YFGE+AL+ ++PRAA+ A G +KC+ +D FER+LGPC +I+KRNI Y
Sbjct: 347 YFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY 397
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 171/291 (58%), Gaps = 15/291 (5%)
Query: 35 RRGGISAEPVS----EEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFD 90
RR + AE + E+DA S + + PK L +A +LF +LD S + D
Sbjct: 109 RRAXVCAEAYNPDEEEDDAESRI--IHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLD 166
Query: 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE----LVTSVGEGGSFGELALIY 146
AMF GE +I QGD+GDNFYVID+G ++YV + V + GSFGELAL+Y
Sbjct: 167 AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY 226
Query: 147 GTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTV 206
TP+AAT+ A + LWGLDR ++RRI++ + +KRK+YE F+ + L+SLE ERL V
Sbjct: 227 NTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKV 286
Query: 207 ADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVL-----QNTVEEESPVEVGKLGPSD 261
D + + D E I+ QG D F+I+ G + ++ VEE VE+ +
Sbjct: 287 VDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQ 346
Query: 262 YFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQY 312
YFGE+AL+ ++PRAA+ A G +KC+ +D FER+LGPC +I+KRNI Y
Sbjct: 347 YFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY 397
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/276 (42%), Positives = 165/276 (59%), Gaps = 11/276 (3%)
Query: 46 EEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIIT 105
E+DA S + + PK L +A +LF +LD S + DAMF GE +I
Sbjct: 13 EDDAESRI--IHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVID 70
Query: 106 QGDEGDNFYVIDQGEVEVYVNNE----LVTSVGEGGSFGELALIYGTPRAATVRAKTDVK 161
QGD+GDNFYVID+G ++YV + V + GSFGELAL+Y TPRAAT+ A +
Sbjct: 71 QGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGA 130
Query: 162 LWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAI 221
LWGLDR ++RRI++ + +KRK+YE F+ + L+SLE ERL V D + + D E I
Sbjct: 131 LWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQI 190
Query: 222 VRQGQPGDDFYIIVEGTALVL-----QNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAA 276
+ QG D F+I+ G + ++ +EE VE+ + YFGE+AL+ ++PRAA
Sbjct: 191 IAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELALVTNKPRAA 250
Query: 277 TVVAKGPLKCVKLDRARFERVLGPCADILKRNITQY 312
+ A G +KC+ +D FER+LGPC +I+KRNI Y
Sbjct: 251 SAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY 286
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 172/290 (59%), Gaps = 12/290 (4%)
Query: 35 RRGGISAEPVS--EEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAM 92
RR + AE + EE+ + + V PK + L +A +LF +LD+ S + DAM
Sbjct: 2 RRVSVCAETFNPDEEEEDNDPRVVHPKTDEQRCRLQEACKDILLFKNLDQEQLSQVLDAM 61
Query: 93 FPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVT-SVGE---GGSFGELALIYGT 148
F E +I QGD+GDNFYVI++G ++ V + T SVG+ GSFGELAL+Y T
Sbjct: 62 FEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALMYNT 121
Query: 149 PRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVAD 208
PRAAT+ A ++ LWGLDR ++RRI++ + +KRK++E F+ V + +SLE ER+ + D
Sbjct: 122 PRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESVPLFKSLEMSERMKIVD 181
Query: 209 SLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVL------QNTVEEESPVEVGKLGPSDY 262
+ ++D E I+ QG+ D FYII G +L N VE+ Y
Sbjct: 182 VIGEKIYKDGERIIAQGEKADSFYIIESGEVSILIRSKTKSNKNGGNQEVEIAHCHKGQY 241
Query: 263 FGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQY 312
FGE+AL+ ++PRAA+ G +KC+ +D FER+LGPC DI+KRNI+ Y
Sbjct: 242 FGELALVTNKPRAASAYGVGDVKCLVMDVQAFERLLGPCMDIMKRNISHY 291
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 207 bits (527), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 156/245 (63%), Gaps = 5/245 (2%)
Query: 64 MAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEV 123
+ L K+I N LF+ LD +++ + + + + G +II QGD+GD FYV+++G V+
Sbjct: 2 LQRLEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDF 61
Query: 124 YVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRK 183
YVN+ V S G G SFGELAL+Y +PRAATV A +D LW LDR ++R+IL+GS+ +KR
Sbjct: 62 YVNDNKVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRL 121
Query: 184 LYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQ 243
+Y++ L + +L+SL ++R +AD+L+ +Q E I+R+G G++FY+I G
Sbjct: 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAV---- 177
Query: 244 NTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCAD 303
V ++ + KL DYFGE+ALL D PR ATV A K L ++ F+R+LGP D
Sbjct: 178 -DVSKKGQGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVD 236
Query: 304 ILKRN 308
+LK N
Sbjct: 237 VLKLN 241
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 130/238 (54%)
Query: 67 LSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN 126
+ +AI N +L+ + +I D M+PV II +GD G YV++ G+VEV
Sbjct: 37 IKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKE 96
Query: 127 NELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYE 186
+ ++G G FGELA++Y R ATV+ +VKLW +DR ++ I+M + + K Y
Sbjct: 97 GVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYM 156
Query: 187 EFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTV 246
EFL V +SL + +AD LE +++ E I+RQG GD F+II +G V +
Sbjct: 157 EFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDS 216
Query: 247 EEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADI 304
E PV + LG D+FGE AL + R A V+A + C+ +DR F+ ++G D+
Sbjct: 217 PNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDV 274
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 77 FSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE------LV 130
F L E S + D + + GE II QG GD F++I +G+V V + +
Sbjct: 165 FQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFL 224
Query: 131 TSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEE 187
++G+G FGE AL R A V A V +DRDS++ ++ G K YE+
Sbjct: 225 RTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYED 281
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 96/162 (59%), Gaps = 10/162 (6%)
Query: 35 RRGGISAEPVS----EEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFD 90
RR + AE + E+DA S + + PK L +A +LF +LD S + D
Sbjct: 2 RRASVCAEAYNPDEEEDDAESRI--IHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLD 59
Query: 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE----LVTSVGEGGSFGELALIY 146
AMF GE +I QGD+GDNFYVID+G ++YV + V + GSFGELAL+Y
Sbjct: 60 AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY 119
Query: 147 GTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEF 188
TPRAAT+ A + LWGLDR ++RRI++ + +KRK+YE F
Sbjct: 120 NTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESF 161
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 168 DSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQP 227
D+ RI+ T +R +E + + ++L+ + V D++ ++ E ++ QG
Sbjct: 19 DAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDD 78
Query: 228 GDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCV 287
GD+FY+I GT + + VG FGE+AL+ + PRAAT+ A P
Sbjct: 79 GDNFYVIDRGTFDIYVKC--DGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALW 136
Query: 288 KLDRARFERVL 298
LDR F R++
Sbjct: 137 GLDRVTFRRII 147
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 94/159 (59%), Gaps = 10/159 (6%)
Query: 35 RRGGISAEPVS----EEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFD 90
RR + AE + E+DA S + + PK L +A +LF +LD S + D
Sbjct: 8 RRASVCAEAYNPDEEEDDAESRI--IHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLD 65
Query: 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE----LVTSVGEGGSFGELALIY 146
AMF GE +I QGD+GDNFYVID+G ++YV + V + GSFGELAL+Y
Sbjct: 66 AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY 125
Query: 147 GTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLY 185
TPRAAT+ A + LWGLDR ++RRI++ + +KRK+Y
Sbjct: 126 NTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 164
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 168 DSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQP 227
D+ RI+ T +R +E + + ++L+ + V D++ ++ E ++ QG
Sbjct: 25 DAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDD 84
Query: 228 GDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCV 287
GD+FY+I GT + + VG FGE+AL+ + PRAAT+ A P
Sbjct: 85 GDNFYVIDRGTFDIYVKC--DGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALW 142
Query: 288 KLDRARFERVL 298
LDR F R++
Sbjct: 143 GLDRVTFRRII 153
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%)
Query: 58 PKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVID 117
PK ++ + +AI N +L+ + +I D M+PV II +GD G YV++
Sbjct: 12 PKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVME 71
Query: 118 QGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGS 177
G+VEV + ++G G FGELA++Y R ATV+ +VKLW +DR ++ I+M +
Sbjct: 72 DGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRT 131
Query: 178 TIRKRKLY 185
+ K Y
Sbjct: 132 GLIKHTEY 139
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 180 RKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTA 239
+ + L +E + +++LE + + D + PV + I+++G G Y++ +G
Sbjct: 16 QSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKV 75
Query: 240 LVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVL 298
V + V+ + +GP FGE+A+L + R ATV +K +DR F+ ++
Sbjct: 76 EVTKEGVK------LCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIM 128
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 185 YEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQN 244
+E L+R I + +E + L+PV F + +G+PGD YII+ G + +
Sbjct: 4 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRR 63
Query: 245 TVE-EESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDR 291
+ E+ + + +GPSD FGE+++ PR ++ ++ V +DR
Sbjct: 64 APDGRENLLTI--MGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 109
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 67 LSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN 126
+ + +A+ +F ++ + + + + PV+ G ++ +G+ GD Y+I G+V++
Sbjct: 4 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRR 63
Query: 127 -----NELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYR 171
L+T +G FGEL++ PR ++ T+V+ +DRD+ R
Sbjct: 64 APDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALR 113
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 186 EEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNT 245
+E L+R I + +E + L+PV F + +G+PGD YII+ G + +
Sbjct: 27 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRA 86
Query: 246 VEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDR 291
+ + + +GPSD FGE+++ PR ++ ++ V +DR
Sbjct: 87 PDGRENL-LTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 131
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 19/118 (16%)
Query: 73 KNVLF-SHLDEN-TRSDIFDA------------MFPVNCLPGESIITQGDEGDNFYVIDQ 118
+N+ F SH+DE R+ IF + PV+ G ++ +G+ GD Y+I
Sbjct: 18 ENLYFQSHMDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIIS 77
Query: 119 GEVEVYVN-----NELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYR 171
G+V++ L+T +G FGEL++ PR ++ T+V+ +DRD+ R
Sbjct: 78 GKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALR 135
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%)
Query: 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128
K +A LF++ D N + + + PG+ II +G G Y I G V V
Sbjct: 75 KLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN 134
Query: 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRIL 174
T + +G FGE+ L+ R A+VRA T +L+ L D++ +L
Sbjct: 135 KETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVL 180
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPR 274
FQ + I+R+G G Y I G VL +E KL YFGEI LL R
Sbjct: 103 FQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKET------KLADGSYFGEICLLTRGRR 156
Query: 275 AATVVAKGPLKCVKLDRARFERVL 298
A+V A + L F VL
Sbjct: 157 TASVRADTYCRLYSLSVDNFNEVL 180
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 185 YEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQN 244
+E L+R I + +E + L+PV F + +G+PGD YII+ G + +
Sbjct: 2 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRR 61
Query: 245 TVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDR 291
+ + + +GPSD FGE+++ PR ++ ++ V +DR
Sbjct: 62 APDGRENL-LTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 107
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 67 LSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN 126
+ + +A+ +F ++ + + + + PV+ G ++ +G+ GD Y+I G+V++
Sbjct: 2 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRR 61
Query: 127 -----NELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYR 171
L+T +G FGEL++ PR ++ T+V+ +DRD+ R
Sbjct: 62 APDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALR 111
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 185 YEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQN 244
+E L+R I + +E + L+PV F + +G+PGD YII+ G + +
Sbjct: 1 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRR 60
Query: 245 TVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDR 291
+ + + +GPSD FGE+++ PR ++ ++ V +DR
Sbjct: 61 APDGRENL-LTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 106
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 67 LSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN 126
+ + +A+ +F ++ + + + + PV+ G ++ +G+ GD Y+I G+V++
Sbjct: 1 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRR 60
Query: 127 -----NELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYR 171
L+T +G FGEL++ PR ++ T+V+ +DRD+ R
Sbjct: 61 APDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALR 110
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%)
Query: 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128
K +A LF++ D N + + + PG+ II +G G Y I G V V
Sbjct: 69 KLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN 128
Query: 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRIL 174
T + +G FGE+ L+ R A+VRA T +L+ L D++ +L
Sbjct: 129 KETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVL 174
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPR 274
FQ + I+R+G G Y I G VL +E KL YFGEI LL R
Sbjct: 97 FQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE------TKLADGSYFGEICLLTRGRR 150
Query: 275 AATVVAKGPLKCVKLDRARFERVL 298
A+V A + L F VL
Sbjct: 151 TASVRADTYCRLYSLSVDNFNEVL 174
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%)
Query: 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128
K +A LF++ D N + + + PG+ II +G G Y I G V V
Sbjct: 69 KLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN 128
Query: 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRIL 174
T + +G FGE+ L+ R A VRA T +L+ L D++ +L
Sbjct: 129 KETKLADGSYFGEICLLTRGRRTARVRADTYCRLYSLSVDNFNEVL 174
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPR 274
FQ + I+R+G G Y I G VL +E KL YFGEI LL R
Sbjct: 97 FQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE------TKLADGSYFGEICLLTRGRR 150
Query: 275 AATVVAKGPLKCVKLDRARFERVL 298
A V A + L F VL
Sbjct: 151 TARVRADTYCRLYSLSVDNFNEVL 174
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 77 FSHLDENTRSDIFDAM-FPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE-LVTSVG 134
SHL + ++ + F + G + QG+EG ++Y+I +G V V + + +V ++
Sbjct: 40 LSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLH 99
Query: 135 EGGSFGELALIYGTPRAATVRAKTD-VKLWGLDRDSYRRIL 174
EG FG+LAL+ PRAA++ + D +D++ + RIL
Sbjct: 100 EGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRIL 140
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 221 IVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA 280
+ QG+ G +YII++G+ N V V V L D FG++AL+ D PRAA++V
Sbjct: 67 LFNQGEEGTSWYIILKGSV----NVVIYGKGV-VCTLHEGDDFGKLALVNDAPRAASIVL 121
Query: 281 K-GPLKCVKLDRARFERVL 298
+ +++D+ F R+L
Sbjct: 122 REDNCHFLRVDKEDFNRIL 140
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 77 FSHLDENTRSDIFDAM-FPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE-LVTSVG 134
SHL + ++ + F + G + QG+EG ++Y+I +G V V + + +V ++
Sbjct: 345 LSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLH 404
Query: 135 EGGSFGELALIYGTPRAATVRAKTD-VKLWGLDRDSYRRIL 174
EG FG+LAL+ PRAA++ + D +D++ + RIL
Sbjct: 405 EGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRIL 445
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 221 IVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA 280
+ QG+ G +YII++G+ N V V V L D FG++AL+ D PRAA++V
Sbjct: 372 LFNQGEEGTSWYIILKGSV----NVVIYGKGV-VCTLHEGDDFGKLALVNDAPRAASIVL 426
Query: 281 K-GPLKCVKLDRARFERVL 298
+ +++D+ F R+L
Sbjct: 427 REDNCHFLRVDKEDFNRIL 445
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 96 NCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE-------LVTSVGEGGSFGELALIYGT 148
N G ++ QGD G N+Y + G ++V V+ + ++G G +FGE +++ T
Sbjct: 69 NLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNT 127
Query: 149 PRAATVRAKTDVKLWGLDRDSYRRI 173
PR AT+ + +L ++++ ++ +
Sbjct: 128 PRHATIVTRESSELLRIEQEDFKAL 152
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 162 LWG--LDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKE 219
LW L Y+ + G +R +L ++ V + + L + + +L +
Sbjct: 205 LWAGILATGFYQEVRRGDFVRNWQL----VAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260
Query: 220 AIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVV 279
I R G+PGD + +VEG+ +V +PVE LGP +FGE+AL+ PR+ATV
Sbjct: 261 VICRIGEPGDRMFFVVEGSV-----SVATPNPVE---LGPGAFFGEMALISGEPRSATVS 312
Query: 280 AKGPLKCVKLDRARFE 295
A + + L A F+
Sbjct: 313 AATTVSLLSLHSADFQ 328
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 49 ATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGD 108
AT + ++V D+ L A+ LF L +I A+ G I G+
Sbjct: 211 ATGFYQEVRRGDFVRNWQLVAAVP---LFQKLGPAVLVEIVRALRARTVPAGAVICRIGE 267
Query: 109 EGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRD 168
GD + + +G V V N + +G G FGE+ALI G PR+ATV A T V L L
Sbjct: 268 PGDRMFFVVEGSVSVATPNPV--ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSA 325
Query: 169 SYRRI 173
++ +
Sbjct: 326 DFQML 330
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 186 EEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNT 245
+E L+R I + +E + L+PV F + +G+PGD YII+ G + +
Sbjct: 27 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRA 86
Query: 246 VEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDR 291
+ + + GPSD FGE+++ PR ++ ++ V +DR
Sbjct: 87 PDGRENL-LTIXGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 131
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 19/118 (16%)
Query: 73 KNVLF-SHLDEN-TRSDIFDA------------MFPVNCLPGESIITQGDEGDNFYVIDQ 118
+N+ F SH+DE R+ IF + PV+ G ++ +G+ GD Y+I
Sbjct: 18 ENLYFQSHMDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIIS 77
Query: 119 GEVEVYVN-----NELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYR 171
G+V++ L+T G FGEL++ PR ++ T+V+ +DRD+ R
Sbjct: 78 GKVKIGRRAPDGRENLLTIXGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALR 135
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 77 FSHLDENTRSDIFDAM-FPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE-LVTSVG 134
SHL + ++ + F + G + QG+EG ++Y+I +G V V + + +V ++
Sbjct: 345 LSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLH 404
Query: 135 EGGSFGELALIYGTPRAATVRAKTD-VKLWGLDRDSYRRIL 174
EG FG+LAL+ PRAA++ + D +D++ + RIL
Sbjct: 405 EGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRIL 445
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 221 IVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA 280
+ QG+ G +YII++G+ N V V V L D FG++AL+ D PRAA++V
Sbjct: 372 LFNQGEEGTSWYIILKGSV----NVVIYGKGV-VCTLHEGDDFGKLALVNDAPRAASIVL 426
Query: 281 K-GPLKCVKLDRARFERVL 298
+ +++D+ F R+L
Sbjct: 427 REDNCHFLRVDKEDFNRIL 445
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 96 NCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE-------LVTSVGEGGSFGELALIYGT 148
N G ++ QGD G N+Y + G ++V V+ + ++G G +FGE +++ T
Sbjct: 69 NLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNT 127
Query: 149 PRAATVRAKTDVKLWGLDRDSYR 171
PR AT+ + +L ++++ ++
Sbjct: 128 PRHATIVTRESSELLRIEQEDFK 150
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 71 IAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELV 130
+A LF L +I A+ G I G+ GD + + +G V V N +
Sbjct: 15 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV- 73
Query: 131 TSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGS 177
+G G FGE+ALI G PR+ATV A T V L L ++ + S
Sbjct: 74 -ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSS 119
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 221 IVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA 280
I R G+PGD + +VEG+ +V +PVE LGP +FGE+AL+ PR+ATV A
Sbjct: 47 ICRIGEPGDRMFFVVEGSV-----SVATPNPVE---LGPGAFFGEMALISGEPRSATVSA 98
Query: 281 KGPLKCVKLDRARFE 295
+ + L A F+
Sbjct: 99 ATTVSLLSLHSADFQ 113
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 71 IAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELV 130
+A LF L +I A+ G I G+ GD + + +G V V N +
Sbjct: 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV- 71
Query: 131 TSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGS 177
+G G FGE+ALI G PR+ATV A T V L L ++ + S
Sbjct: 72 -ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSS 117
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 187 EFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTV 246
+ ++ V + + L + + +L + I R G+PGD + +VEG+ +V
Sbjct: 11 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSV-----SV 65
Query: 247 EEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFE 295
+PVE LGP +FGE+AL+ PR+ATV A + + L A F+
Sbjct: 66 ATPNPVE---LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQ 111
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 71 IAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELV 130
+A LF L +I A+ G I G+ GD + + +G V V N +
Sbjct: 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV- 71
Query: 131 TSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGS 177
+G G FGE+ALI G PR+ATV A T V L L ++ + S
Sbjct: 72 -ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSS 117
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 187 EFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTV 246
+ ++ V + + L + + +L + I R G+PGD + +VEG+ +V
Sbjct: 11 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSV-----SV 65
Query: 247 EEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFE 295
+PVE LGP +FGE+AL+ PR+ATV A + + L A F+
Sbjct: 66 ATPNPVE---LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQ 111
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 71 IAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELV 130
+A LF L +I A+ G I G+ GD + + +G V V N +
Sbjct: 17 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV- 75
Query: 131 TSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGS 177
+G G FGE+ALI G PR+ATV A T V L L ++ + S
Sbjct: 76 -ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSS 121
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 221 IVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA 280
I R G+PGD + +VEG+ +V +PVE LGP +FGE+AL+ PR+ATV A
Sbjct: 49 ICRIGEPGDRMFFVVEGSV-----SVATPNPVE---LGPGAFFGEMALISGEPRSATVSA 100
Query: 281 KGPLKCVKLDRARFE 295
+ + L A F+
Sbjct: 101 ATTVSLLSLHSADFQ 115
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%)
Query: 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128
K +A LF++ D N + + + PG+ II +G G Y I G V V
Sbjct: 75 KLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN 134
Query: 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRIL 174
+ +G FGE+ L+ R A+VRA T +L+ L D++ +L
Sbjct: 135 KEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVL 180
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPR 274
FQ + I+R+G G Y I G VL +E KL YFGEI LL R
Sbjct: 103 FQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM------KLSDGSYFGEICLLTRGRR 156
Query: 275 AATVVAKGPLKCVKLDRARFERVL 298
A+V A + L F VL
Sbjct: 157 TASVRADTYCRLYSLSVDNFNEVL 180
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%)
Query: 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128
K +A LF++ D N + + + PG+ II +G G Y I G V V
Sbjct: 72 KLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN 131
Query: 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRIL 174
+ +G FGE+ L+ R A+VRA T +L+ L D++ +L
Sbjct: 132 KEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVL 177
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPR 274
FQ + I+R+G G Y I G VL +E KL YFGEI LL R
Sbjct: 100 FQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM------KLSDGSYFGEICLLTRGRR 153
Query: 275 AATVVAKGPLKCVKLDRARFERVL 298
A+V A + L F VL
Sbjct: 154 TASVRADTYCRLYSLSVDNFNEVL 177
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%)
Query: 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128
K +A LF++ D N + + + PG+ II +G G Y I G V V
Sbjct: 72 KLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN 131
Query: 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRIL 174
+ +G FGE+ L+ R A+VRA T +L+ L D++ +L
Sbjct: 132 KEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVL 177
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPR 274
FQ + I+R+G G Y I G VL +E KL YFGEI LL R
Sbjct: 100 FQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM------KLSDGSYFGEICLLTRGRR 153
Query: 275 AATVVAKGPLKCVKLDRARFERVL 298
A+V A + L F VL
Sbjct: 154 TASVRADTYCRLYSLSVDNFNEVL 177
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%)
Query: 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128
K +A LF++ D N + + + PG+ II +G G Y I G V V
Sbjct: 72 KLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN 131
Query: 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRIL 174
+ +G FGE+ L+ R A+VRA T +L+ L D++ +L
Sbjct: 132 KEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVL 177
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPR 274
FQ + I+R+G G Y I G VL +E KL YFGEI LL R
Sbjct: 100 FQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM------KLSDGSYFGEICLLTRGRR 153
Query: 275 AATVVAKGPLKCVKLDRARFERVL 298
A+V A + L F VL
Sbjct: 154 TASVRADTYCRLYSLSVDNFNEVL 177
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%)
Query: 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128
K +A LF++ D N + + + PG+ II +G G Y I G V V
Sbjct: 70 KLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN 129
Query: 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRIL 174
+ +G FGE+ L+ R A+VRA T +L+ L D++ +L
Sbjct: 130 KEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVL 175
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPR 274
FQ + I+R+G G Y I G VL +E KL YFGEI LL R
Sbjct: 98 FQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM------KLSDGSYFGEICLLTRGRR 151
Query: 275 AATVVAKGPLKCVKLDRARFERVL 298
A+V A + L F VL
Sbjct: 152 TASVRADTYCRLYSLSVDNFNEVL 175
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 77 FSHLDENTRSDIFDAM-FPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE-LVTSVG 134
SHL + ++ + F + G + QG+EG ++Y+I +G V V + + +V ++
Sbjct: 345 LSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLH 404
Query: 135 EGGSFGELALIYGTPRAATVRAKTD-VKLWGLDRDSYRRIL 174
EG FG+LAL+ PRAA++ + D +D++ RIL
Sbjct: 405 EGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRIL 445
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 96 NCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE-------LVTSVGEGGSFGELALIYGT 148
N G ++ QGD G N+Y + G ++V V+ + ++G G +FGE +++ T
Sbjct: 69 NLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNT 127
Query: 149 PRAATVRAKTDVKLWGLDRDSYRRI 173
PR AT+ + +L ++++ ++ +
Sbjct: 128 PRHATIVTRESSELLRIEQEDFKAL 152
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 221 IVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA 280
+ QG+ G +YII++G+ N V V V L D FG++AL+ D PRAA++V
Sbjct: 372 LFNQGEEGTSWYIILKGSV----NVVIYGKGV-VCTLHEGDDFGKLALVNDAPRAASIV- 425
Query: 281 KGPLKCVKLDRARFERV 297
++ D F RV
Sbjct: 426 ------LREDNCHFLRV 436
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%)
Query: 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128
K +A LF++ D N + + + PG+ II +G G Y I G V V
Sbjct: 74 KLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN 133
Query: 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRIL 174
+ +G FGE++L+ R A+VRA T +L+ L D++ +L
Sbjct: 134 KEMKLSDGSYFGEISLLTRGRRTASVRADTYSRLYSLSVDNFNEVL 179
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPR 274
FQ + I+R+G G Y I G VL +E KL YFGEI+LL R
Sbjct: 102 FQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM------KLSDGSYFGEISLLTRGRR 155
Query: 275 AATVVAKGPLKCVKLDRARFERVL 298
A+V A + L F VL
Sbjct: 156 TASVRADTYSRLYSLSVDNFNEVL 179
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 71 IAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELV 130
+A LF L +I A+ G I G+ GD + + +G V V N +
Sbjct: 15 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV- 73
Query: 131 TSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGS 177
+G G FGE+ALI G P +ATV A T V L L ++ + S
Sbjct: 74 -ELGPGAFFGEMALISGEPESATVSAATTVSLLSLHSADFQMLCSSS 119
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 221 IVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA 280
I R G+PGD + +VEG+ +V +PVE LGP +FGE+AL+ P +ATV A
Sbjct: 47 ICRIGEPGDRMFFVVEGSV-----SVATPNPVE---LGPGAFFGEMALISGEPESATVSA 98
Query: 281 KGPLKCVKLDRARFE 295
+ + L A F+
Sbjct: 99 ATTVSLLSLHSADFQ 113
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 71 IAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELV 130
+A LF L +I A+ G I G+ GD + + +G V V N +
Sbjct: 15 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV- 73
Query: 131 TSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGS 177
+G G FGE+ALI G P +ATV A T V L L ++ + S
Sbjct: 74 -ELGPGAFFGEMALISGEPWSATVSAATTVSLLSLHSADFQMLCSSS 119
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 221 IVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA 280
I R G+PGD + +VEG+ +V +PVE LGP +FGE+AL+ P +ATV A
Sbjct: 47 ICRIGEPGDRMFFVVEGSV-----SVATPNPVE---LGPGAFFGEMALISGEPWSATVSA 98
Query: 281 KGPLKCVKLDRARFERVLGPCADI 304
+ + L A F+ + +I
Sbjct: 99 ATTVSLLSLHSADFQMLCSSSPEI 122
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%)
Query: 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128
K +A LF++ D N + + PG+ II +G G Y I G V V
Sbjct: 72 KLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVVSVLTKGN 131
Query: 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRIL 174
+ +G FGE+ L+ R A+VRA T +L+ L D++ +L
Sbjct: 132 KEXKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVL 177
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPR 274
FQ + I+R+G G Y I G VL +E KL YFGEI LL R
Sbjct: 100 FQPGDYIIREGTIGKKXYFIQHGVVSVLTKGNKEX------KLSDGSYFGEICLLTRGRR 153
Query: 275 AATVVAKGPLKCVKLDRARFERVL 298
A+V A + L F VL
Sbjct: 154 TASVRADTYCRLYSLSVDNFNEVL 177
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%)
Query: 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128
K +A LF++ D N + + + PG+ II +G G Y I G V +
Sbjct: 75 KLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSS 134
Query: 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRIL 174
+ +G FGE+ L+ R A+VRA T +L+ L D++ +L
Sbjct: 135 KEMKLTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDNFNEVL 180
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPR 274
FQ + I+R+G G Y I G A V+ + +E KL YFGEI LL R
Sbjct: 103 FQPGDYIIREGAVGKKMYFIQHGVAGVITKSSKE------MKLTDGSYFGEICLLTKGRR 156
Query: 275 AATVVAKGPLKCVKLDRARFERVL 298
A+V A + L F VL
Sbjct: 157 TASVRADTYCRLYSLSVDNFNEVL 180
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 71 IAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN--- 127
+ +N LF+ LD+ +++ + V G+++ +GD GD YV+ +G+V+++ +
Sbjct: 7 LRRNPLFAALDDEQSAELRASXSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDG 66
Query: 128 --ELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGL 165
+ VG GEL+L PR AT A T+VKL L
Sbjct: 67 RENXLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLAL 106
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 186 EEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNT 245
++ L R + +L+ + + S V+ + + +G PGD Y++ EG + L T
Sbjct: 4 DDVLRRNPLFAALDDEQSAELRASXSEVTLARGDTLFHEGDPGDRLYVVTEGK-VKLHRT 62
Query: 246 VEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKL 289
+ + +GPS+ GE++L PR AT A +K + L
Sbjct: 63 SPDGRENXLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLAL 106
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 99 PGESIITQGDEGDNFYVIDQGEVEVYVNNELV-TSVGEGGSFGELALIYGTPRAATVRAK 157
P + +I +G GD + I QG V++ +++ ++ TS+ +G FGE+ L+ R A+V+ +
Sbjct: 101 PADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTRERRVASVKCE 160
Query: 158 TDVKLWGLDRDSYRRIL 174
T L+ L + ++L
Sbjct: 161 TYCTLFSLSVQHFNQVL 177
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 206 VADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGE 265
V LE FQ + ++++G GD + I +G ++ + V L YFGE
Sbjct: 90 VVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMS-----DGVIATSLSDGSYFGE 144
Query: 266 IALLLDRPRAATVVAKGPLKCVKLDRARFERVL 298
I LL R A+V + L F +VL
Sbjct: 145 ICLLTRERRVASVKCETYCTLFSLSVQHFNQVL 177
>pdb|4AVC|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVC|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 204 LTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263
+++A S++P+ + ++RQG+P F +I G+A V + V ++ + + P
Sbjct: 30 VSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEV--SHVGDDGVAIIARALPGXIV 87
Query: 264 GEIALLLDRPRAATVVAKGPLKCVKLDRARFE---RVLGPCADILKRNITQYNSFVS 317
GEIALL D PR+ATV PL R F + G +L+ + +FVS
Sbjct: 88 GEIALLRDSPRSATVTTIEPLTGWTGGRGAFATXVHIPGVGERLLRTARQRLAAFVS 144
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 94 PVNCLPGESIITQGDEGDNFYVIDQGEVEV-YVNNELVTSVGE---GGSFGELALIYGTP 149
P+ G+ ++ QG+ +F +I G EV +V ++ V + G GE+AL+ +P
Sbjct: 38 PLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGXIVGEIALLRDSP 97
Query: 150 RAATVRAKTDVKLWGLDRDSY 170
R+ATV + W R ++
Sbjct: 98 RSATVTTIEPLTGWTGGRGAF 118
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 186 EEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNT 245
+E LSR I + ++ + +E V F I +G+PGD YII G + ++
Sbjct: 25 QEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHA 84
Query: 246 VE-EESPVEVGKLGPSDYFGEIALLLDRPRAATVV 279
+ E+ + + +GPSD FGE+++ PR ++ V
Sbjct: 85 PDGRENLLTI--MGPSDMFGELSIFDPGPRTSSAV 117
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 56 VVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYV 115
+VP+ M + + +++ +F +D +++ M V G +I +G+ GD Y+
Sbjct: 14 LVPRGSH-MEGVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYI 72
Query: 116 IDQGEVEVYVN-----NELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSY 170
I G+V++ + L+T +G FGEL++ PR ++ T+V ++ D
Sbjct: 73 ITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDML 132
Query: 171 R 171
R
Sbjct: 133 R 133
>pdb|4AVA|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 From Mycobacterium Tuberculosis
pdb|4AVB|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVB|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 204 LTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263
+++A S++P+ + ++RQG+P F +I G+A V + V ++ + + P
Sbjct: 30 VSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEV--SHVGDDGVAIIARALPGMIV 87
Query: 264 GEIALLLDRPRAATVVAKGPLKCVKLDRARFERVL---GPCADILKRNITQYNSFVS 317
GEIALL D PR+ATV PL R F ++ G +L+ + +FVS
Sbjct: 88 GEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVGERLLRTARQRLAAFVS 144
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 94 PVNCLPGESIITQGDEGDNFYVIDQGEVEV-YVNNELVTSVGE---GGSFGELALIYGTP 149
P+ G+ ++ QG+ +F +I G EV +V ++ V + G GE+AL+ +P
Sbjct: 38 PLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSP 97
Query: 150 RAATVRAKTDVKLWGLDRDSY 170
R+ATV + W R ++
Sbjct: 98 RSATVTTIEPLTGWTGGRGAF 118
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 95 VNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGT--PRAA 152
V+C PG+ I G+ D+ + G +EV ++E+V +G+G FG++ T A
Sbjct: 53 VHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCA 112
Query: 153 TVRAKTDVKLWGLDRDSYRRIL 174
VRA T L + RD+ +++L
Sbjct: 113 NVRALTYCDLHVIKRDALQKVL 134
>pdb|3E97|A Chain A, Crystal Structure Of Transcriptional Regulator Of CrpFNR
Family (Yp_604437.1) From Deinococcus Geothermalis Dsm
11300 At 1.86 A Resolution
Length = 231
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 5/130 (3%)
Query: 71 IAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYV----- 125
+ ++ LF ++ E+ + + N P E ++ Q EG+ +++ G V V
Sbjct: 8 LKRSPLFQNVPEDAXREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGG 67
Query: 126 NNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLY 185
++ + G GE A++ R+A+VRA T V+ L R+ + IL L
Sbjct: 68 RERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLXLHREHFELILRRHPRVLWNLA 127
Query: 186 EEFLSRVSIL 195
E RV+ L
Sbjct: 128 EXLARRVTFL 137
>pdb|3GYD|A Chain A, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
pdb|3GYD|B Chain B, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
Length = 187
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 94 PVNCLPGESIITQGDEGDNFYVIDQGEVEVY--VNN---ELVTSVGEGGSFGELALIYGT 148
P +C ++T+GD GD +I GEV V + N + + VG G GE + I G
Sbjct: 68 PRDC----QLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEXSXIDGX 123
Query: 149 PRAATVRAKTDVKLWGLDRDSYRRIL 174
PR+A+ A L RD+ ++L
Sbjct: 124 PRSASCVASLPTDFAVLSRDALYQLL 149
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 221 IVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA 280
++ +G PGD +I+ G V+++ + + + K+G GE + + PR+A+ VA
Sbjct: 73 LLTEGDPGDYLLLILTGEVNVIKD-IPNKGIQTIAKVGAGAIIGEXSXIDGXPRSASCVA 131
Query: 281 KGPLKCVKLDRARFERVL 298
P L R ++L
Sbjct: 132 SLPTDFAVLSRDALYQLL 149
>pdb|1I6X|A Chain A, Structure Of A Star Mutant Crp-Camp At 2.2 A
pdb|1I6X|B Chain B, Structure Of A Star Mutant Crp-Camp At 2.2 A
Length = 209
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLD-RP 273
+ K ++ QG+ + Y IV+G+ VL EE + + L D+ GE+ L + +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKH-EEGKEMILSYLNQGDFIGELGLFEEGQE 81
Query: 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
R+A V AK + ++ +F +++ DIL R
Sbjct: 82 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 115
>pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3R|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLD-RP 273
+ K ++ QG+ + Y IV+G+ VL EE + + L D+ GE+ L + +
Sbjct: 16 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKD-EEGKEMILSYLNQGDFIGELGLFEEGQE 74
Query: 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
R+A V AK + ++ +F +++ DIL R
Sbjct: 75 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 108
>pdb|1O3S|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLD-RP 273
+ K ++ QG+ + Y IV+G+ VL EE + + L D+ GE+ L + +
Sbjct: 16 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKD-EEGKEMILSYLNQGDFIGELGLFEEGQE 74
Query: 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
R+A V AK + ++ +F +++ DIL R
Sbjct: 75 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 108
>pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant
pdb|3FWE|B Chain B, Crystal Structure Of The Apo D138l Cap Mutant
Length = 210
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLD-RP 273
+ K ++ QG+ + Y IV+G+ VL EE + + L D+ GE+ L + +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKD-EEGKEMILSYLNQGDFIGELGLFEEGQE 82
Query: 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
R+A V AK + ++ +F +++ DIL R
Sbjct: 83 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 116
>pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUO|B Chain B, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
Length = 209
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLD-RP 273
+ K ++ QG+ + Y IV+G+ VL EE + + L D+ GE+ L + +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKD-EEGKEMILSYLNQGDFIGELGLFEEGQE 81
Query: 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
R+A V AK + ++ +F +++ DIL R
Sbjct: 82 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 115
>pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|3HIF|A Chain A, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|B Chain B, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|C Chain C, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|D Chain D, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|E Chain E, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|F Chain F, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3RYP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLD-RP 273
+ K ++ QG+ + Y IV+G+ VL EE + + L D+ GE+ L + +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKD-EEGKEMILSYLNQGDFIGELGLFEEGQE 82
Query: 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
R+A V AK + ++ +F +++ DIL R
Sbjct: 83 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 116
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
Length = 205
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLD-RP 273
+ K ++ QG+ + Y IV+G+ VL EE + + L D+ GE+ L + +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKD-EEGKEMILSYLNQGDFIGELGLFEEGQE 81
Query: 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
R+A V AK + ++ +F +++ DIL R
Sbjct: 82 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 115
>pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1I5Z|A Chain A, Structure Of Crp-Camp At 1.9 A
pdb|1I5Z|B Chain B, Structure Of Crp-Camp At 1.9 A
pdb|1ZRC|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRC|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRD|A Chain A, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRD|B Chain B, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRE|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRE|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRF|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|1ZRF|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|2GZW|A Chain A, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|B Chain B, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|C Chain C, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|D Chain D, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2WC2|A Chain A, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|2WC2|B Chain B, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|3IYD|G Chain G, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3IYD|H Chain H, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3N4M|A Chain A, E. Coli Rna Polymerase Alpha Subunit C-Terminal Domain In
Complex With Cap And Dna
Length = 209
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLD-RP 273
+ K ++ QG+ + Y IV+G+ VL EE + + L D+ GE+ L + +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKD-EEGKEMILSYLNQGDFIGELGLFEEGQE 81
Query: 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
R+A V AK + ++ +F +++ DIL R
Sbjct: 82 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 115
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 100 GESIITQGDEGDNFYVIDQGEVEVYVNN-----ELVTSVGEGGSFGELALIYGTPRAATV 154
G+ I QGD G Y++ G+V ++ + + +G G FGE++L+ R+A+
Sbjct: 30 GKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASA 89
Query: 155 RAKTDVKLWGLDRDSY 170
A D +L L R+ Y
Sbjct: 90 VAVEDTELLALFREDY 105
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 221 IVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA 280
I QG G Y++ G + + + + + LGP + FGE++LL + R+A+ VA
Sbjct: 33 IFYQGDLGQALYLVASGKVRLFRTHLGGQERT-LALLGPGELFGEMSLLDEGERSASAVA 91
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLD-RP 273
+ K ++ QG+ + Y IV+G+ VL EE + + L D+ GE+ L + +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKD-EEGKEMILSYLNQGDFIGELGLFEEGQE 82
Query: 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
R+A V AK + ++ +F +++ DIL R
Sbjct: 83 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 116
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
pdb|3KCC|B Chain B, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
Length = 260
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLD-RP 273
+ K ++ QG+ + Y IV+G+ VL EE + + L D+ GE+ L + +
Sbjct: 74 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKD-EEGKEMILSYLNQGDFIGELGLFEEGQE 132
Query: 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
R+A V AK + ++ +F +++ DIL R
Sbjct: 133 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 166
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3QOP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLD-RP 273
+ K ++ QG+ + Y IV+G+ VL EE + + L D+ GE+ L + +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKD-EEGKEMILFYLNQGDFIGELGLFEEGQE 82
Query: 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
R+A V AK + ++ +F +++ DIL R
Sbjct: 83 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 116
>pdb|2Z69|A Chain A, Crystal Structure Of The Sensor Domain Of The
Transcriptional Regulator Dnr From Pseudomonas
Aeruginosa
pdb|2Z69|B Chain B, Crystal Structure Of The Sensor Domain Of The
Transcriptional Regulator Dnr From Pseudomonas
Aeruginosa
pdb|2Z69|C Chain C, Crystal Structure Of The Sensor Domain Of The
Transcriptional Regulator Dnr From Pseudomonas
Aeruginosa
Length = 154
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 176 GSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIV 235
GS + ++++++ L + E L + + S + V+ + RQG+P FY ++
Sbjct: 1 GSHMEFQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLI 60
Query: 236 EGTALVLQNTVE-EESPVEVGKLGPSDYFGEIALLLDRPR-AATVVAKGPLKCVKLDRAR 293
G + + T E +E +EV + F E + +D P AT A P + +
Sbjct: 61 SGCVKIYRLTPEGQEKILEVT--NERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKA 118
Query: 294 FERVL 298
+ R L
Sbjct: 119 YLRQL 123
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 95 VNCLPGESIITQGDEGDNFYVIDQGEVEVYV-----NNELVTSVGEGGSFGELALIYGTP 149
VN G + QG+ FY + G V++Y +++ E +F E + TP
Sbjct: 38 VNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTP 97
Query: 150 R-AATVRAKTDVKLWGLDRDSYRRILMGST 178
AT +A +L+ +Y R L +T
Sbjct: 98 NYVATAQAVVPSQLFRFSNKAYLRQLQDNT 127
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 97 CLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140
C PGE +I QGD Y + G +EV +N ++ +G+G G
Sbjct: 103 CAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIG 146
>pdb|3DKW|A Chain A, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|B Chain B, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|C Chain C, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|D Chain D, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|E Chain E, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|F Chain F, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|G Chain G, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|H Chain H, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|I Chain I, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|J Chain J, Crystal Structure Of Dnr From Pseudomonas Aeruginosa
Length = 227
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 182 RKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALV 241
++++++ L + E L + + S + V+ + RQG+P FY ++ G +
Sbjct: 4 QRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKI 63
Query: 242 LQNTVE-EESPVEVGKLGPSDYFGEIALLLDRPR-AATVVAKGPLKCVKLDRARFERVL 298
+ T E +E +EV + F E + +D P AT A P + + + R L
Sbjct: 64 YRLTPEGQEKILEVT--NERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQL 120
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 95 VNCLPGESIITQGDEGDNFYVIDQGEVEVYV-----NNELVTSVGEGGSFGELALIYGTP 149
VN G + QG+ FY + G V++Y +++ E +F E + TP
Sbjct: 35 VNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTP 94
Query: 150 R-AATVRAKTDVKLWGLDRDSYRRILMGST 178
AT +A +L+ +Y R L +T
Sbjct: 95 NYVATAQAVVPSQLFRFSNKAYLRQLQDNT 124
>pdb|2D93|A Chain A, Solution Structure Of The Cnmp_binding Domain Of Human Rap
Guanine Nucleotide Exchange Factor 6
Length = 134
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 77 FSHLDENTRSDIFDAM-FPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGE 135
F+++ + R ++ M F V G I+ G E D++YVI G VE+ + V ++
Sbjct: 24 FANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENLFM 83
Query: 136 GGSFGELALIYGTPRAATVRAKT-DVKLWGLDRDSYRRIL 174
G SFG + VR K D + + + Y RIL
Sbjct: 84 GNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRIL 123
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVE--VGKLGPSDYFGEIALL--- 269
+ K I+ G + + I++G+ +L +E++ E +G L D+FGE+ L
Sbjct: 18 YTAKSTIIYAGDRCETLFFIIKGSVTIL---IEDDDGREMIIGYLNSGDFFGELGLFEKE 74
Query: 270 -LDRPRAATVVAKGPLKCVKLDRARFERVLGPCADIL 305
++ R+A V AK + ++ A+F + ++IL
Sbjct: 75 GSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEIL 111
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 191 RVSILESLEKWERL--TVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEG 237
RV + E+++ ERL + + L+P F +K +VR+G P ++ I+ G
Sbjct: 10 RVPLFENMD--ERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRG 56
>pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 422
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
Query: 111 DNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSY 170
DN + D E +VYVN +L +SVG G GE K L+++SY
Sbjct: 117 DNIIIYDHNEGKVYVNADL-SSVGGCGDIGEF--------------KVSFYDESLNKNSY 161
Query: 171 RRILMGST--IRKRKLYEEFLSR 191
RI+ S IR +++ LSR
Sbjct: 162 ERIVSESLEYIRSGYIFQVVLSR 184
>pdb|3H3Z|A Chain A, Crystal Structure Of A Putative Cyclic Nucleotide Binding
Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3 At 2.35
A Resolution
pdb|3H3Z|B Chain B, Crystal Structure Of A Putative Cyclic Nucleotide Binding
Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3 At 2.35
A Resolution
Length = 235
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 69 KAIAKN-VLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVY--- 124
KAIA+N +L L E + + GE++ Q ++ +V+ G V+++
Sbjct: 8 KAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRXT 67
Query: 125 -VNNELVTSV-GEGGSFGELALIYGTPRAATVRAKTDVKL 162
+E V SV G SFGE + TP + A T ++
Sbjct: 68 PTGSEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEV 107
>pdb|3FX3|A Chain A, Structure Of A Putative Camp-Binding Regulatory Protein
From Silicibacter Pomeroyi Dss-3
pdb|3FX3|B Chain B, Structure Of A Putative Camp-Binding Regulatory Protein
From Silicibacter Pomeroyi Dss-3
Length = 237
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 69 KAIAKN-VLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVY--- 124
KAIA+N +L L E + + GE++ Q ++ +V+ G V+++
Sbjct: 10 KAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRXT 69
Query: 125 -VNNELVTSV-GEGGSFGELALIYGTPRAATVRAKTDVKL 162
+E V SV G SFGE + TP + A T ++
Sbjct: 70 PTGSEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEV 109
>pdb|3U4Y|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
(Dtox_1751) From Desulfotomaculum Acetoxidans Dsm 771.
pdb|3U4Y|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
(Dtox_1751) From Desulfotomaculum Acetoxidans Dsm 771
Length = 331
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 96 NCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALI-----YGTPR 150
N LPG ++++ +G YV+ + V+V+ N+L ++ SFG LI +G +
Sbjct: 220 NNLPGTIVVSR--DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQ 277
Query: 151 AATVRAKTDVKLW 163
A KT+ KL+
Sbjct: 278 XA--LNKTETKLF 288
>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
pdb|3MPD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
Length = 151
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 195 LESLEKWERLTVADSLEPVSFQDKEAI 221
+E+ EK +L + D ++PVSF DKE I
Sbjct: 124 VENAEKEIKLWIGDDVQPVSFFDKEWI 150
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDN 112
+AIAK +L+SH D + + D M E +IT D+ DN
Sbjct: 69 EAIAKYILYSHADSSNGEAVEDPM--------EIVITVTDQNDN 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,222,188
Number of Sequences: 62578
Number of extensions: 384910
Number of successful extensions: 1136
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 125
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (24.3 bits)