Query psy18137
Match_columns 320
No_of_seqs 288 out of 2843
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 23:34:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1113|consensus 100.0 8.1E-52 1.8E-56 346.2 21.4 284 31-320 85-368 (368)
2 KOG0614|consensus 100.0 2.7E-45 5.8E-50 320.5 14.3 274 34-307 117-393 (732)
3 KOG2968|consensus 99.8 1.1E-19 2.5E-24 168.5 12.7 209 98-314 392-611 (1158)
4 PRK09392 ftrB transcriptional 99.7 2E-16 4.4E-21 134.0 14.9 125 68-192 6-134 (236)
5 KOG1113|consensus 99.7 1.2E-16 2.5E-21 135.3 10.4 143 149-301 88-230 (368)
6 PRK09392 ftrB transcriptional 99.7 1.1E-15 2.3E-20 129.6 13.8 126 186-313 6-131 (236)
7 PLN03192 Voltage-dependent pot 99.7 1.4E-15 3.1E-20 150.3 16.2 133 66-198 371-507 (823)
8 KOG0498|consensus 99.7 5E-16 1.1E-20 146.2 11.2 123 64-186 414-542 (727)
9 PF00027 cNMP_binding: Cyclic 99.6 1.7E-15 3.8E-20 108.3 10.0 90 213-303 2-91 (91)
10 cd00038 CAP_ED effector domain 99.6 5.7E-15 1.2E-19 110.0 12.8 108 76-183 1-113 (115)
11 PRK11753 DNA-binding transcrip 99.6 8.6E-15 1.9E-19 121.9 13.8 118 196-314 6-124 (211)
12 cd00038 CAP_ED effector domain 99.6 1E-14 2.2E-19 108.7 12.4 113 194-307 1-113 (115)
13 KOG0614|consensus 99.6 4.9E-16 1.1E-20 137.6 5.4 134 47-180 250-390 (732)
14 PRK11753 DNA-binding transcrip 99.6 2.8E-14 6E-19 118.8 14.9 115 78-192 6-126 (211)
15 smart00100 cNMP Cyclic nucleot 99.6 3E-14 6.6E-19 106.7 13.0 117 194-311 1-119 (120)
16 PLN03192 Voltage-dependent pot 99.6 1.8E-14 3.9E-19 142.5 14.8 127 185-313 372-498 (823)
17 KOG0500|consensus 99.6 3.4E-14 7.3E-19 125.1 13.0 122 64-185 302-431 (536)
18 PF00027 cNMP_binding: Cyclic 99.6 1.5E-14 3.2E-19 103.4 9.0 86 94-179 1-91 (91)
19 smart00100 cNMP Cyclic nucleot 99.6 1.1E-13 2.3E-18 103.7 13.6 109 76-184 1-116 (120)
20 KOG0498|consensus 99.6 1.6E-14 3.5E-19 136.1 10.8 125 184-310 416-542 (727)
21 COG2905 Predicted signal-trans 99.6 3E-14 6.6E-19 127.7 11.9 128 66-193 4-132 (610)
22 PRK10402 DNA-binding transcrip 99.5 4.5E-14 9.8E-19 118.7 11.6 106 205-311 26-131 (226)
23 COG0664 Crp cAMP-binding prote 99.5 7.1E-14 1.5E-18 116.3 12.7 121 193-314 6-126 (214)
24 COG0664 Crp cAMP-binding prote 99.5 1E-13 2.2E-18 115.3 13.4 121 72-192 3-128 (214)
25 KOG0500|consensus 99.5 7.9E-14 1.7E-18 122.8 11.4 129 181-313 301-435 (536)
26 PLN02868 acyl-CoA thioesterase 99.5 1.9E-13 4.1E-18 124.9 13.8 110 65-176 4-117 (413)
27 PRK10402 DNA-binding transcrip 99.5 3E-13 6.6E-18 113.7 13.4 122 66-191 9-135 (226)
28 PRK11161 fumarate/nitrate redu 99.5 4.7E-13 1E-17 113.4 13.7 121 71-192 15-141 (235)
29 PRK11161 fumarate/nitrate redu 99.5 3.2E-13 6.9E-18 114.4 12.5 121 190-312 16-137 (235)
30 KOG3542|consensus 99.5 8.3E-13 1.8E-17 120.1 13.4 248 50-303 18-393 (1283)
31 KOG0499|consensus 99.5 2.7E-13 5.8E-18 121.7 9.5 116 68-183 526-647 (815)
32 PLN02868 acyl-CoA thioesterase 99.4 2.4E-12 5.2E-17 117.7 13.6 112 185-300 6-117 (413)
33 TIGR03697 NtcA_cyano global ni 99.4 1.3E-12 2.8E-17 107.2 10.2 96 218-314 1-98 (193)
34 PRK09391 fixK transcriptional 99.4 3.2E-12 6.9E-17 107.8 12.7 105 206-314 34-138 (230)
35 KOG2968|consensus 99.4 2.8E-11 6.1E-16 113.6 15.9 233 67-302 93-483 (1158)
36 PRK13918 CRP/FNR family transc 99.3 1.8E-11 3.9E-16 101.1 12.1 84 209-294 5-90 (202)
37 KOG0499|consensus 99.3 6.4E-12 1.4E-16 113.0 8.6 116 187-305 527-645 (815)
38 TIGR03697 NtcA_cyano global ni 99.3 2.5E-11 5.5E-16 99.5 10.7 93 100-192 1-100 (193)
39 PRK09391 fixK transcriptional 99.3 4.1E-11 8.8E-16 101.0 12.1 104 87-193 33-141 (230)
40 KOG3542|consensus 99.3 7.7E-12 1.7E-16 113.9 6.9 155 10-176 232-390 (1283)
41 COG2905 Predicted signal-trans 99.3 4.8E-11 1E-15 107.5 10.9 120 185-309 5-124 (610)
42 PRK13918 CRP/FNR family transc 99.2 1.3E-10 2.7E-15 96.1 11.3 79 91-170 5-90 (202)
43 KOG0501|consensus 99.0 2.4E-10 5.3E-15 102.9 5.9 120 67-186 546-667 (971)
44 KOG0501|consensus 98.3 5.8E-07 1.3E-11 81.6 4.8 111 188-304 549-661 (971)
45 PF04831 Popeye: Popeye protei 98.3 4.2E-05 9.1E-10 58.1 13.1 105 79-183 14-125 (153)
46 PRK11832 putative DNA-binding 97.9 0.00022 4.8E-09 57.9 11.5 94 85-178 15-110 (207)
47 PRK11832 putative DNA-binding 97.5 0.0023 4.9E-08 52.1 11.2 93 205-302 17-110 (207)
48 PF04831 Popeye: Popeye protei 96.5 0.064 1.4E-06 41.1 10.7 99 198-302 15-120 (153)
49 PRK11171 hypothetical protein; 94.0 0.7 1.5E-05 39.8 10.3 159 91-263 62-233 (266)
50 PRK13290 ectC L-ectoine syntha 92.8 1 2.3E-05 33.8 8.2 69 92-165 37-106 (125)
51 PF07883 Cupin_2: Cupin domain 92.2 0.89 1.9E-05 29.9 6.6 44 95-139 3-47 (71)
52 KOG2378|consensus 90.8 0.2 4.3E-06 45.2 2.8 43 135-177 1-44 (573)
53 TIGR03214 ura-cupin putative a 88.8 6.8 0.00015 33.6 10.5 158 91-263 59-228 (260)
54 PF05899 Cupin_3: Protein of u 86.3 1.5 3.3E-05 29.5 4.2 42 97-140 14-55 (74)
55 KOG2378|consensus 86.2 0.58 1.3E-05 42.3 2.6 45 259-303 1-46 (573)
56 COG0662 {ManC} Mannose-6-phosp 86.2 3.3 7.1E-05 31.2 6.4 48 91-139 37-85 (127)
57 PF07883 Cupin_2: Cupin domain 84.9 7 0.00015 25.4 7.0 65 213-289 3-70 (71)
58 COG3718 IolB Uncharacterized e 84.7 4 8.8E-05 33.8 6.5 79 91-169 30-112 (270)
59 TIGR03037 anthran_nbaC 3-hydro 83.8 5.4 0.00012 31.2 6.6 62 222-292 43-104 (159)
60 COG1917 Uncharacterized conser 82.2 3.4 7.3E-05 31.1 5.0 50 91-141 44-94 (131)
61 PRK13290 ectC L-ectoine syntha 82.1 14 0.00031 27.7 8.2 67 212-289 39-106 (125)
62 PRK13264 3-hydroxyanthranilate 77.2 11 0.00024 30.0 6.5 59 226-292 52-110 (177)
63 TIGR03037 anthran_nbaC 3-hydro 76.6 8.9 0.00019 30.0 5.7 61 102-168 41-104 (159)
64 PRK09943 DNA-binding transcrip 73.4 24 0.00052 28.4 7.9 67 95-165 112-179 (185)
65 PRK13264 3-hydroxyanthranilate 73.1 12 0.00027 29.8 5.8 65 98-168 42-110 (177)
66 smart00835 Cupin_1 Cupin. This 71.4 31 0.00067 26.4 7.8 52 211-263 33-85 (146)
67 PF12973 Cupin_7: ChrR Cupin-l 69.8 13 0.00029 25.9 5.0 64 209-288 25-88 (91)
68 smart00835 Cupin_1 Cupin. This 66.3 17 0.00037 27.9 5.4 50 91-140 31-86 (146)
69 PF12973 Cupin_7: ChrR Cupin-l 64.6 17 0.00038 25.3 4.7 64 91-164 25-88 (91)
70 PRK11171 hypothetical protein; 63.4 29 0.00063 29.9 6.7 49 91-140 185-234 (266)
71 COG3837 Uncharacterized conser 63.1 71 0.0015 24.9 7.9 56 204-266 31-95 (161)
72 COG3837 Uncharacterized conser 62.3 17 0.00037 28.2 4.4 49 94-143 46-96 (161)
73 TIGR01479 GMP_PMI mannose-1-ph 61.7 48 0.001 31.2 8.3 70 92-165 378-448 (468)
74 PF04962 KduI: KduI/IolB famil 59.2 26 0.00056 30.1 5.6 77 92-168 29-108 (261)
75 TIGR01479 GMP_PMI mannose-1-ph 55.8 1.2E+02 0.0027 28.4 10.0 87 194-290 360-449 (468)
76 PRK04190 glucose-6-phosphate i 53.3 57 0.0012 26.5 6.4 48 92-139 70-130 (191)
77 PRK15460 cpsB mannose-1-phosph 53.3 83 0.0018 29.7 8.3 71 91-165 386-457 (478)
78 COG0662 {ManC} Mannose-6-phosp 52.9 94 0.002 23.2 8.2 47 210-263 38-85 (127)
79 PRK15460 cpsB mannose-1-phosph 52.6 1.2E+02 0.0026 28.7 9.2 70 211-290 388-458 (478)
80 PF02084 Bindin: Bindin; Inte 51.0 11 0.00024 30.9 1.9 63 36-98 98-166 (238)
81 PF11699 CENP-C_C: Mif2/CENP-C 50.9 31 0.00066 23.9 3.9 29 111-140 34-62 (85)
82 TIGR02451 anti_sig_ChrR anti-s 50.7 52 0.0011 27.3 6.0 66 91-166 128-195 (215)
83 PRK09943 DNA-binding transcrip 49.6 63 0.0014 25.9 6.2 54 227-290 127-180 (185)
84 COG3450 Predicted enzyme of th 49.6 64 0.0014 23.8 5.5 44 94-139 49-92 (116)
85 COG3718 IolB Uncharacterized e 47.6 65 0.0014 27.0 5.8 77 210-292 31-111 (270)
86 COG1917 Uncharacterized conser 46.2 68 0.0015 23.9 5.6 47 211-264 46-93 (131)
87 PF00190 Cupin_1: Cupin; Inte 46.1 1.3E+02 0.0028 22.8 8.3 64 213-281 39-107 (144)
88 PHA00672 hypothetical protein 43.4 1.4E+02 0.003 22.3 7.8 43 91-134 48-90 (152)
89 TIGR02272 gentisate_1_2 gentis 43.2 1.4E+02 0.003 26.8 7.7 74 95-174 255-328 (335)
90 PF01050 MannoseP_isomer: Mann 42.9 89 0.0019 24.3 5.8 47 92-139 65-112 (151)
91 TIGR02451 anti_sig_ChrR anti-s 42.1 59 0.0013 27.0 5.0 67 210-292 129-197 (215)
92 COG5458 Uncharacterized conser 41.5 26 0.00056 25.7 2.3 38 110-147 55-92 (144)
93 PF06865 DUF1255: Protein of u 41.2 1.3E+02 0.0027 21.4 5.7 60 95-161 28-88 (94)
94 TIGR03214 ura-cupin putative a 40.8 83 0.0018 26.9 5.9 50 89-139 178-228 (260)
95 TIGR03404 bicupin_oxalic bicup 38.7 1E+02 0.0023 27.9 6.4 49 91-139 68-120 (367)
96 PRK15457 ethanolamine utilizat 37.9 73 0.0016 26.7 4.8 29 110-139 175-203 (233)
97 PF06249 EutQ: Ethanolamine ut 36.3 67 0.0014 25.0 4.1 29 110-139 95-123 (152)
98 PF01050 MannoseP_isomer: Mann 35.7 2.1E+02 0.0045 22.3 6.8 46 211-263 66-112 (151)
99 TIGR03404 bicupin_oxalic bicup 34.7 1.3E+02 0.0028 27.3 6.3 49 91-139 246-299 (367)
100 PF06249 EutQ: Ethanolamine ut 34.6 1.9E+02 0.004 22.6 6.3 50 229-290 96-145 (152)
101 PF10330 Stb3: Putative Sin3 b 33.7 55 0.0012 22.8 2.9 42 170-211 11-54 (92)
102 PF02311 AraC_binding: AraC-li 31.7 97 0.0021 22.5 4.5 62 110-175 23-86 (136)
103 COG3257 GlxB Uncharacterized p 29.3 1.3E+02 0.0027 25.0 4.7 58 106-167 79-136 (264)
104 PF12852 Cupin_6: Cupin 28.7 1.1E+02 0.0023 24.5 4.4 32 108-139 33-65 (186)
105 PRK10579 hypothetical protein; 27.3 2.3E+02 0.005 20.1 7.1 59 95-160 28-87 (94)
106 PF06865 DUF1255: Protein of u 27.1 2.3E+02 0.005 20.1 6.8 63 214-288 29-91 (94)
107 COG1220 HslU ATP-dependent pro 26.6 1E+02 0.0022 27.8 4.0 52 159-210 330-381 (444)
108 PRK15457 ethanolamine utilizat 26.0 3.4E+02 0.0075 22.8 6.8 28 229-263 176-203 (233)
109 TIGR02272 gentisate_1_2 gentis 25.1 4.5E+02 0.0098 23.6 7.9 49 92-141 83-132 (335)
110 PF14633 SH2_2: SH2 domain; PD 25.1 1.2E+02 0.0025 25.4 4.0 41 69-114 33-74 (220)
111 PRK10579 hypothetical protein; 24.4 2.6E+02 0.0057 19.8 7.1 61 215-287 30-90 (94)
112 PF13128 DUF3954: Protein of u 24.4 1.8E+02 0.0039 17.9 4.3 15 228-242 9-23 (50)
113 KOG4600|consensus 22.9 1.9E+02 0.0041 21.9 4.3 39 207-245 50-100 (144)
114 PF06052 3-HAO: 3-hydroxyanthr 22.7 3.7E+02 0.0081 20.9 7.3 59 227-293 52-110 (151)
115 cd06929 NR_LBD_F1 Ligand-bindi 21.7 1.2E+02 0.0025 23.8 3.4 31 61-91 12-42 (174)
116 PF04962 KduI: KduI/IolB famil 20.8 2.7E+02 0.0057 24.0 5.5 77 210-291 29-107 (261)
No 1
>KOG1113|consensus
Probab=100.00 E-value=8.1e-52 Score=346.25 Aligned_cols=284 Identities=57% Similarity=0.909 Sum_probs=272.8
Q ss_pred CCCccceeEeeccCCCcccccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCC
Q psy18137 31 QSARRRGGISAEPVSEEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEG 110 (320)
Q Consensus 31 ~~~~r~~~is~e~~~~~~~~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~ 110 (320)
....||++||+|.+.+.. ..+....+||++++++.+.++++++.+|.+|+++++..+..+|..+.+++|+.|++||+.+
T Consensus 85 ~~~~RRssV~aE~~tp~~-d~~~~~~~pKd~e~~~~L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeG 163 (368)
T KOG1113|consen 85 VLFVRRSSVSAEEITPDD-DEFKRKYIPKDDETRRRLEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEG 163 (368)
T ss_pred ccccccceeeeeecCccc-hhhhhcCCCCCHHHHHHHHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcC
Confidence 344899999999999877 7788899999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhh
Q psy18137 111 DNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLS 190 (320)
Q Consensus 111 ~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (320)
++||||-+|+++|++++..+..+.+|.+|||++|+++.||++|+.|.+++.+|.|++.+|++++..+....+.++..+++
T Consensus 164 d~fYvI~kGt~dVyv~~~~v~~~~~g~sFGElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~ 243 (368)
T KOG1113|consen 164 DNFYVIDKGTFDVYVNGTYVTTYSPGGSFGELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLE 243 (368)
T ss_pred CcEEEEecceEEEEECCeEEeeeCCCCchhhhHhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhc
Q psy18137 191 RVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLL 270 (320)
Q Consensus 191 ~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~ 270 (320)
.+|++..+...++.++++.+..+.|.+|+.|+.+|+.++.||+|.+|+|.+.+.. ++ +.+ .++.|++|||.+++.
T Consensus 244 s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~--~~--v~v-kl~~~dyfge~al~~ 318 (368)
T KOG1113|consen 244 SVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR--DG--VEV-KLKKGDYFGELALLK 318 (368)
T ss_pred cchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc--CC--eEE-EechhhhcchHHHHh
Confidence 9999999999999999999999999999999999999999999999999998665 22 566 899999999999999
Q ss_pred CCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhhcccccC
Q psy18137 271 DRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNSFVSLSV 320 (320)
Q Consensus 271 ~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~~~~~~~ 320 (320)
+.||.++|.|..+..|+++++..|.+++++..++|+|++..|+.++.+++
T Consensus 319 ~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~dilkr~~~~y~~~v~l~~ 368 (368)
T KOG1113|consen 319 NLPRAATVVAKGRLKCAKLDKPRFERLLGPCQDILKRNRSTYNSYVKLSL 368 (368)
T ss_pred hchhhceeeccCCceeeeeChHHHHHHhhHHHHHHHhhhhhccccccccC
Confidence 99999999999999999999999999999999999999999999887764
No 2
>KOG0614|consensus
Probab=100.00 E-value=2.7e-45 Score=320.50 Aligned_cols=274 Identities=35% Similarity=0.630 Sum_probs=260.3
Q ss_pred ccceeEeeccCCCc--ccccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCC
Q psy18137 34 RRRGGISAEPVSEE--DATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGD 111 (320)
Q Consensus 34 ~r~~~is~e~~~~~--~~~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~ 111 (320)
.++..+|||+.... ...++..+...|+....+.|.++++.+.++++|+.+++.+|..+|....|.+|+.|+++||+++
T Consensus 117 ~kkq~vsae~t~~~~~~s~~~~l~~~~Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs 196 (732)
T KOG0614|consen 117 AKKQAVSAEPTNFTIDPSSSITLPRYNKDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGS 196 (732)
T ss_pred HHHhhccccccccccccccccccccccCCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCc
Confidence 47889999998733 3345677888999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhh
Q psy18137 112 NFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSR 191 (320)
Q Consensus 112 ~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (320)
++|++..|.+.|++.++.+..+++|..|||++++++++|+++|+|++++++|.|+++.|+.+++.....+...+.+|++.
T Consensus 197 ~~yV~aeG~~~V~~~g~ll~~m~~gtvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrs 276 (732)
T KOG0614|consen 197 HLYVSAEGELQVSREGKLLGKMGAGTVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRS 276 (732)
T ss_pred eEEEeecceEEEeeCCeeeeccCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcC
Q psy18137 192 VSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLD 271 (320)
Q Consensus 192 ~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~ 271 (320)
+++|+++++..+.++++.++...|..|++|+++|+.++.||+|.+|.|.+.+.....+++..++.+..||+|||.+|+..
T Consensus 277 v~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE~al~~e 356 (732)
T KOG0614|consen 277 VPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGERALLGE 356 (732)
T ss_pred hhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999988777788889999999999999999999
Q ss_pred CCceeEEEEecC-eEEEEEehHHHHHhhcCHHHHHHH
Q psy18137 272 RPRAATVVAKGP-LKCVKLDRARFERVLGPCADILKR 307 (320)
Q Consensus 272 ~~~~~tv~a~~~-~~v~~i~~~~f~~ll~~~~~~~~~ 307 (320)
..|+++++|..+ ++|+.|+++.|.++++...++-++
T Consensus 357 dvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek 393 (732)
T KOG0614|consen 357 DVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEK 393 (732)
T ss_pred CccchhhhccCCCceEEEecHHHHHHhcccHHHhhhh
Confidence 999999999997 999999999999999998877643
No 3
>KOG2968|consensus
Probab=99.82 E-value=1.1e-19 Score=168.53 Aligned_cols=209 Identities=24% Similarity=0.357 Sum_probs=178.2
Q ss_pred CCCCeEEecCCCCCeEEEEEeeEEEEEE-----------cCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEc
Q psy18137 98 LPGESIITQGDEGDNFYVIDQGEVEVYV-----------NNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLD 166 (320)
Q Consensus 98 ~~g~~I~~~G~~~~~~yiI~~G~v~v~~-----------~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~ 166 (320)
+...+|..+|+.....|+|+.|.+.++. .+..+..+++|+.+|.++++.+.+...+++|.++|.++.|+
T Consensus 392 keitiiv~q~a~~~gl~~ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla~lt~e~S~~tirArsdt~v~~is 471 (1158)
T KOG2968|consen 392 KEITIIVEQGARDVGLYYIIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLAILTNEPSFITIRARSDTRVLFIS 471 (1158)
T ss_pred cceEEEEecccccceeeEEeecceeeeehhcccccccccccceEEEecCCceechhhhhcCCcceEEEEEecceEEEEee
Confidence 4566789999999999999999998765 23378889999999999999999999999999999999999
Q ss_pred hhhHHHHhhhhhHHHhhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEecc
Q psy18137 167 RDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTV 246 (320)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~ 246 (320)
+.+|.+++...|..-..+-..+++.++- .+..+-.++.+..+.+|+.++++||.++++|+|++|.++-....
T Consensus 472 rs~l~~~~~~~p~I~L~ia~svl~~lsp-------~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~- 543 (1158)
T KOG2968|consen 472 RSDLERFLDAEPLIYLRIAHSVLRRLSP-------FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQ- 543 (1158)
T ss_pred HHHHHHHHHhCceEEEehhhHHHHhcCH-------HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhc-
Confidence 9999999999985544433344444332 24455667889999999999999999999999999999977443
Q ss_pred CCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhh
Q psy18137 247 EEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNS 314 (320)
Q Consensus 247 ~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~ 314 (320)
.+++...+.+++.||.+|+.+.+++.+|..|+.|+.++++.+||..-|.-+...+|.+..|.++...+
T Consensus 544 ~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~ 611 (1158)
T KOG2968|consen 544 SGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAE 611 (1158)
T ss_pred cCccchhhhhccCcceeehhHHhhcCCccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444468999999999999999999999999999999999999999999999999999988775443
No 4
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.72 E-value=2e-16 Score=134.04 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=113.8
Q ss_pred HHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc----CEEEEecCCCCeeehhh
Q psy18137 68 SKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN----NELVTSVGEGGSFGELA 143 (320)
Q Consensus 68 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~----~~~~~~~~~G~~fGe~~ 143 (320)
.++|+.+++|+.|+++++..+...+..+.|++|++|+++|+.++++|+|++|.++++.. ...+..+.+|++||+.+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~ 85 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAA 85 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHH
Confidence 36899999999999999999999999999999999999999999999999999999862 23788899999999999
Q ss_pred hhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 144 LIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 144 ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
++.+.++.++++|.++|.++.||.+.|.+++.++|.....+...+.+++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~ 134 (236)
T PRK09392 86 VVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCY 134 (236)
T ss_pred HhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877666554443
No 5
>KOG1113|consensus
Probab=99.69 E-value=1.2e-16 Score=135.28 Aligned_cols=143 Identities=31% Similarity=0.436 Sum_probs=119.6
Q ss_pred CcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCC
Q psy18137 149 PRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPG 228 (320)
Q Consensus 149 ~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~ 228 (320)
.|..+|.|.+...-. +.|...+........+.+...+++.-+|..|++.++.++.+++..+.++.|+.|++||+.+
T Consensus 88 ~RRssV~aE~~tp~~----d~~~~~~~pKd~e~~~~L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeG 163 (368)
T KOG1113|consen 88 VRRSSVSAEEITPDD----DEFKRKYIPKDDETRRRLEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEG 163 (368)
T ss_pred cccceeeeeecCccc----hhhhhcCCCCCHHHHHHHHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcC
Confidence 445555554332221 4555555544455566677788888999999999999999999999999999999999999
Q ss_pred CeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCH
Q psy18137 229 DDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPC 301 (320)
Q Consensus 229 ~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~ 301 (320)
++||+|.+|++.|+++. ..+..+++|.+|||.+|+.+.||.+||+|.+++.+|.|++..|.+++-.+
T Consensus 164 d~fYvI~kGt~dVyv~~------~~v~~~~~g~sFGElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s 230 (368)
T KOG1113|consen 164 DNFYVIDKGTFDVYVNG------TYVTTYSPGGSFGELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKS 230 (368)
T ss_pred CcEEEEecceEEEEECC------eEEeeeCCCCchhhhHhhhCCCcccceeeccccceEEEeeceeEEEeecc
Confidence 99999999999999762 35899999999999999999999999999999999999999999887654
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.67 E-value=1.1e-15 Score=129.61 Aligned_cols=126 Identities=10% Similarity=0.183 Sum_probs=114.2
Q ss_pred HHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecH
Q psy18137 186 EEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGE 265 (320)
Q Consensus 186 ~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 265 (320)
..+++.+++|..+++..+..+...+....|++|++|+++|+.++++|+|.+|.++++.. .. ++...+..+.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~-~~-~~~~~i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSAS-SQ-DRETTLAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEc-CC-CceEEEEEeCCCchhhh
Confidence 34788999999999999999999999999999999999999999999999999999965 33 44577899999999999
Q ss_pred HhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhh
Q psy18137 266 IALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYN 313 (320)
Q Consensus 266 ~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~ 313 (320)
.+++.+.++.++++|.++|+++.|+++.|.+++..+|.+....+..+.
T Consensus 84 ~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~ 131 (236)
T PRK09392 84 AAVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELA 131 (236)
T ss_pred HHHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876655443
No 7
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.67 E-value=1.4e-15 Score=150.30 Aligned_cols=133 Identities=23% Similarity=0.340 Sum_probs=121.2
Q ss_pred HHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc----CEEEEecCCCCeeeh
Q psy18137 66 ALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN----NELVTSVGEGGSFGE 141 (320)
Q Consensus 66 ~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~----~~~~~~~~~G~~fGe 141 (320)
....+++++++|++++++.+..++..++.+.|.||+.|+.+||.++.+|||.+|.|++... ...+..+++|++|||
T Consensus 371 l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE 450 (823)
T PLN03192 371 LFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGE 450 (823)
T ss_pred HHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecc
Confidence 3346789999999999999999999999999999999999999999999999999999762 236888999999999
Q ss_pred hhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhhhhcccC
Q psy18137 142 LALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESL 198 (320)
Q Consensus 142 ~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 198 (320)
.+++.+.|+.++++|.+.|+++.|++++|.++++.+|.....++..++++...+..+
T Consensus 451 ~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~l 507 (823)
T PLN03192 451 VGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKELHDL 507 (823)
T ss_pred hHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhhhccc
Confidence 999999999999999999999999999999999999999988888888876655544
No 8
>KOG0498|consensus
Probab=99.66 E-value=5e-16 Score=146.17 Aligned_cols=123 Identities=28% Similarity=0.384 Sum_probs=113.3
Q ss_pred HHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcC----EEEEecCCCCee
Q psy18137 64 MAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN----ELVTSVGEGGSF 139 (320)
Q Consensus 64 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~----~~~~~~~~G~~f 139 (320)
.....++++++|+|+++++..++.||..++...|.+|++|+++||+.+.||||.+|.+++...+ .....+++||+|
T Consensus 414 ~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 414 RHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred HHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 3344789999999999999999999999999999999999999999999999999999999877 689999999999
Q ss_pred e-hhhhhcC-CCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHH
Q psy18137 140 G-ELALIYG-TPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYE 186 (320)
Q Consensus 140 G-e~~ll~~-~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 186 (320)
| |+..... .|.++||+|.+.|++++|++++|..+++.++.....+..
T Consensus 494 GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~ 542 (727)
T KOG0498|consen 494 GEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQ 542 (727)
T ss_pred chHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHH
Confidence 9 7777766 788999999999999999999999999999987777666
No 9
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.64 E-value=1.7e-15 Score=108.30 Aligned_cols=90 Identities=33% Similarity=0.518 Sum_probs=83.0
Q ss_pred eEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehH
Q psy18137 213 VSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRA 292 (320)
Q Consensus 213 ~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~ 292 (320)
+.|++|++|+++|+..+++|+|++|.+++... ..+++...+..+.+|++||+.+++.+.++.++++|.++|+++.|+++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 80 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSI-NEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE 80 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEE-TTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEec-eecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence 67999999999999999999999999999955 45566667899999999999999999999999999999999999999
Q ss_pred HHHHhhcCHHH
Q psy18137 293 RFERVLGPCAD 303 (320)
Q Consensus 293 ~f~~ll~~~~~ 303 (320)
+|.+++.++|+
T Consensus 81 ~~~~~~~~~p~ 91 (91)
T PF00027_consen 81 DFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHSHH
T ss_pred HHHHHHHhCcC
Confidence 99999988874
No 10
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.64 E-value=5.7e-15 Score=109.98 Aligned_cols=108 Identities=43% Similarity=0.626 Sum_probs=100.0
Q ss_pred cCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcC-----EEEEecCCCCeeehhhhhcCCCc
Q psy18137 76 LFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN-----ELVTSVGEGGSFGELALIYGTPR 150 (320)
Q Consensus 76 ~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~-----~~~~~~~~G~~fGe~~ll~~~~~ 150 (320)
+|..++++.+..++..++.+.+++|++|+.+|+..+++|+|.+|.+.++... ..+..+.+|++||...++.+.++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 5889999999999999999999999999999999999999999999998754 47888999999999999988899
Q ss_pred ceEEeeeceEEEEEEchhhHHHHhhhhhHHHhh
Q psy18137 151 AATVRAKTDVKLWGLDRDSYRRILMGSTIRKRK 183 (320)
Q Consensus 151 ~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 183 (320)
..+++|.++|.+|.|+.+.|..++.+++.....
T Consensus 81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (115)
T cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARR 113 (115)
T ss_pred CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence 999999999999999999999999998876543
No 11
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.62 E-value=8.6e-15 Score=121.92 Aligned_cols=118 Identities=21% Similarity=0.301 Sum_probs=104.9
Q ss_pred ccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCC-Cc
Q psy18137 196 ESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDR-PR 274 (320)
Q Consensus 196 ~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~-~~ 274 (320)
+.+++..+..++..+....|++|++|+.+|+..+++|+|.+|.++++.. ..+|+...+..+++|++||+.+++.+. ++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~-~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~ 84 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIK-DEEGKEMILSYLNQGDFIGELGLFEEGQER 84 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEE-CCCCCEEEEEEcCCCCEEeehhhccCCCCc
Confidence 4578889999999999999999999999999999999999999999854 456677889999999999999998864 68
Q ss_pred eeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhh
Q psy18137 275 AATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNS 314 (320)
Q Consensus 275 ~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~ 314 (320)
.++++|.++|.++.|++++|.+++..+|++....+..+.+
T Consensus 85 ~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 124 (211)
T PRK11753 85 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMAR 124 (211)
T ss_pred eEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999998766555443
No 12
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.62 E-value=1e-14 Score=108.67 Aligned_cols=113 Identities=38% Similarity=0.598 Sum_probs=102.5
Q ss_pred hcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCC
Q psy18137 194 ILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRP 273 (320)
Q Consensus 194 ~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~ 273 (320)
+|..+++..+..+...++...|.+|+.|+.+|+..+++|+|.+|.+.++... .+|+...+..+.+|++||+.+++.+.+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~-~~g~~~~~~~~~~g~~~g~~~~~~~~~ 79 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLD-EDGREQIVGFLGPGDLFGELALLGNGP 79 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEEC-CCCcEEEEEecCCccCcChHHHhcCCC
Confidence 3667888899999999999999999999999999999999999999998654 456677899999999999999998889
Q ss_pred ceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHH
Q psy18137 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307 (320)
Q Consensus 274 ~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~ 307 (320)
+.++++|.++|.++.|+++.|..++..+|++.+.
T Consensus 80 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (115)
T cd00038 80 RSATVRALTDSELLVLPRSDFRRLLQEYPELARR 113 (115)
T ss_pred CCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence 9999999999999999999999999998887654
No 13
>KOG0614|consensus
Probab=99.61 E-value=4.9e-16 Score=137.59 Aligned_cols=134 Identities=26% Similarity=0.387 Sum_probs=119.6
Q ss_pred cccccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc
Q psy18137 47 EDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN 126 (320)
Q Consensus 47 ~~~~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~ 126 (320)
.++..|+.+.+....+......++|+.+|+|++|+++.+..|+..++..+|.+|++|+++|+.++.||||-+|+|.+...
T Consensus 250 idR~vFq~IM~~tg~~r~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~ 329 (732)
T KOG0614|consen 250 IDREVFQAIMMRTGLERHEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQ 329 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeec
Confidence 45566766666666677788899999999999999999999999999999999999999999999999999999999875
Q ss_pred CE------EEEecCCCCeeehhhhhcCCCcceEEeeece-EEEEEEchhhHHHHhhhhhHH
Q psy18137 127 NE------LVTSVGEGGSFGELALIYGTPRAATVRAKTD-VKLWGLDRDSYRRILMGSTIR 180 (320)
Q Consensus 127 ~~------~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~-~~~~~i~~~~~~~~~~~~~~~ 180 (320)
++ .+..++.||+|||.+|+....|++.++|... +.++.|+++.|.+++-.....
T Consensus 330 ~e~~~q~~~lr~l~kGd~FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l 390 (732)
T KOG0614|consen 330 DEGSTQPQELRTLNKGDYFGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEEL 390 (732)
T ss_pred CCCCCchhHHhhccccchhhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHh
Confidence 43 7888999999999999999999999999987 999999999999988544333
No 14
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.60 E-value=2.8e-14 Score=118.84 Aligned_cols=115 Identities=20% Similarity=0.294 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---C--EEEEecCCCCeeehhhhhcCC-Ccc
Q psy18137 78 SHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---N--ELVTSVGEGGSFGELALIYGT-PRA 151 (320)
Q Consensus 78 ~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~--~~~~~~~~G~~fGe~~ll~~~-~~~ 151 (320)
+-+++++++.+++.++.+.|++|++|+.+|++++++|+|++|.++++.. + ..+..+.+|++||+.+++.+. ++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 4579999999999999999999999999999999999999999999863 2 277889999999999988865 678
Q ss_pred eEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 152 ATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 152 ~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
++++|.++|.++.|+.+.|.+++..+|.....+...+.+++
T Consensus 86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l 126 (211)
T PRK11753 86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRL 126 (211)
T ss_pred EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988776655554444
No 15
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.59 E-value=3e-14 Score=106.71 Aligned_cols=117 Identities=36% Similarity=0.581 Sum_probs=104.9
Q ss_pred hcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHh--cC
Q psy18137 194 ILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALL--LD 271 (320)
Q Consensus 194 ~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll--~~ 271 (320)
+|..++...+..++..++...|.+|++|+++|+..+++|+|.+|.++++.. ..+++...+..+.+|++||+..++ ..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~-~~~g~~~~~~~~~~g~~~g~~~~~~~~~ 79 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKV-LEDGREQILGILGPGDFFGELALLTNSR 79 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEE-CCCCceEEEEeecCCceechhhhccCCC
Confidence 367788899999999999999999999999999999999999999999965 455667789999999999999998 34
Q ss_pred CCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHh
Q psy18137 272 RPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQ 311 (320)
Q Consensus 272 ~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~ 311 (320)
.+...++.+.++|.++.++.+.|...+..++..+.+.+..
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (120)
T smart00100 80 RAASATAVALELATLLRIDFRDFLQLLQENPQLLLELLLE 119 (120)
T ss_pred cccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHhc
Confidence 6788999999999999999999999999999998887764
No 16
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.59 E-value=1.8e-14 Score=142.52 Aligned_cols=127 Identities=20% Similarity=0.336 Sum_probs=113.7
Q ss_pred HHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeec
Q psy18137 185 YEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFG 264 (320)
Q Consensus 185 ~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 264 (320)
+..+++++++|+.+++..+..++..++...|.+|+.|+.+|+.++.+|+|.+|+|++... .++++..+..+++|++||
T Consensus 372 ~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~--~~~~e~~l~~l~~Gd~FG 449 (823)
T PLN03192 372 FLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDS--EGEKERVVGTLGCGDIFG 449 (823)
T ss_pred HHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEe--cCCcceeeEEccCCCEec
Confidence 335678889999999999999999999999999999999999999999999999999743 334556789999999999
Q ss_pred HHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhh
Q psy18137 265 EIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYN 313 (320)
Q Consensus 265 e~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~ 313 (320)
|.+++.+.|++++++|.+.|+++.|++++|.+++..+|+.....+...-
T Consensus 450 E~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l 498 (823)
T PLN03192 450 EVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFL 498 (823)
T ss_pred chHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987766665543
No 17
>KOG0500|consensus
Probab=99.57 E-value=3.4e-14 Score=125.13 Aligned_cols=122 Identities=21% Similarity=0.420 Sum_probs=111.3
Q ss_pred HHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcC--EEEEecCCCCeeeh
Q psy18137 64 MAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN--ELVTSVGEGGSFGE 141 (320)
Q Consensus 64 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~--~~~~~~~~G~~fGe 141 (320)
+..-.+.|+++++|+...+..+.++.-.+++..|.||++|++.||.+..||||..|.+.|..++ .....+.+|++|||
T Consensus 302 ~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~FGE 381 (536)
T KOG0500|consen 302 INVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTVFVTLKAGSVFGE 381 (536)
T ss_pred HHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEEEEEecCCceeee
Confidence 4455689999999999999999999999999999999999999999999999999999998754 37788999999999
Q ss_pred hhhhc------CCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHH
Q psy18137 142 LALIY------GTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLY 185 (320)
Q Consensus 142 ~~ll~------~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 185 (320)
++++. +.+|+++++++..+.+++|+++++.+.++.+|..+..+.
T Consensus 382 isIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~ 431 (536)
T KOG0500|consen 382 ISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLE 431 (536)
T ss_pred eEEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHH
Confidence 99876 457899999999999999999999999999998876654
No 18
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.57 E-value=1.5e-14 Score=103.43 Aligned_cols=86 Identities=34% Similarity=0.518 Sum_probs=79.2
Q ss_pred eEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcC---E--EEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchh
Q psy18137 94 PVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN---E--LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRD 168 (320)
Q Consensus 94 ~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~---~--~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~ 168 (320)
.++|++|++|+++|+.++++|||++|.+.++... + .+..+.+|++||+.+++.+.++..+++|.++|.+|.||++
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 80 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE 80 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence 3689999999999999999999999999998733 2 5788999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhH
Q psy18137 169 SYRRILMGSTI 179 (320)
Q Consensus 169 ~~~~~~~~~~~ 179 (320)
.|.++++++|.
T Consensus 81 ~~~~~~~~~p~ 91 (91)
T PF00027_consen 81 DFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHSHH
T ss_pred HHHHHHHhCcC
Confidence 99999998874
No 19
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.56 E-value=1.1e-13 Score=103.70 Aligned_cols=109 Identities=37% Similarity=0.538 Sum_probs=97.6
Q ss_pred cCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc-----CEEEEecCCCCeeehhhhh--cCC
Q psy18137 76 LFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN-----NELVTSVGEGGSFGELALI--YGT 148 (320)
Q Consensus 76 ~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~-----~~~~~~~~~G~~fGe~~ll--~~~ 148 (320)
+|.+++.+.+..++..++.+.|++|++|+++|+..+++|+|.+|.+.++.. ...+..+.+|+.||+..++ ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 588999999999999999999999999999999999999999999999864 2378889999999999988 345
Q ss_pred CcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhH
Q psy18137 149 PRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKL 184 (320)
Q Consensus 149 ~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 184 (320)
+...++.+.++|.++.++.+.+...+...+......
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 116 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLEL 116 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHH
Confidence 778899999999999999999999998887765443
No 20
>KOG0498|consensus
Probab=99.56 E-value=1.6e-14 Score=136.10 Aligned_cols=125 Identities=24% Similarity=0.375 Sum_probs=111.7
Q ss_pred HHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 184 LYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 184 ~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
++..+++++|+|+++++.-+..|+..++...|.+|++|++|||+.+.+|||.+|.+++.... +|.......|++||+|
T Consensus 416 L~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~--~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 416 LCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTD--GGGFFVVAILGPGDFF 493 (727)
T ss_pred HhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEcc--CCceEEEEEecCCCcc
Confidence 45678899999999999999999999999999999999999999999999999999998543 2355679999999999
Q ss_pred c-HHhHhcC-CCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHH
Q psy18137 264 G-EIALLLD-RPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNIT 310 (320)
Q Consensus 264 G-e~~ll~~-~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~ 310 (320)
| |..+... .|.++||+|.+.|+++.|++++|..++..++....+.++
T Consensus 494 GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~ 542 (727)
T KOG0498|consen 494 GEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQ 542 (727)
T ss_pred chHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHH
Confidence 9 6666666 788999999999999999999999999999877766666
No 21
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.56 E-value=3e-14 Score=127.75 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=116.5
Q ss_pred HHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEE-cCEEEEecCCCCeeehhhh
Q psy18137 66 ALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYV-NNELVTSVGEGGSFGELAL 144 (320)
Q Consensus 66 ~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~-~~~~~~~~~~G~~fGe~~l 144 (320)
.+.+++.++|.|+.|+++++.+|...+..+.|.+|++|+..|.+..++|+|.+|.|++.. +++.+..+..|+.||-.++
T Consensus 4 ~~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~v~~~~~~gdlFg~~~l 83 (610)
T COG2905 4 EPDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGEVLDRLAAGDLFGFSSL 83 (610)
T ss_pred CHHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCeeeeeeccCccccchhh
Confidence 467899999999999999999999999999999999999999999999999999999876 5667999999999999999
Q ss_pred hcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhhh
Q psy18137 145 IYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVS 193 (320)
Q Consensus 145 l~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (320)
+...+......|.+|+.++.||++.|.+++.+++.+...+......++.
T Consensus 84 ~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~ 132 (610)
T COG2905 84 FTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLR 132 (610)
T ss_pred cccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 9999888899999999999999999999999999887766655554443
No 22
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.55 E-value=4.5e-14 Score=118.74 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=95.6
Q ss_pred hhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCe
Q psy18137 205 TVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPL 284 (320)
Q Consensus 205 ~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~ 284 (320)
.+...+....|++|+.|+.+|+.++++|+|.+|.|+++.. ..+|+...+..+.+|++||+.+++.+.++++++.|.++|
T Consensus 26 ~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~-~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~ 104 (226)
T PRK10402 26 DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYAT-LANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEEC 104 (226)
T ss_pred HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEE-CCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccE
Confidence 4667788899999999999999999999999999999954 566777889999999999999999999999999999999
Q ss_pred EEEEEehHHHHHhhcCHHHHHHHHHHh
Q psy18137 285 KCVKLDRARFERVLGPCADILKRNITQ 311 (320)
Q Consensus 285 ~v~~i~~~~f~~ll~~~~~~~~~~~~~ 311 (320)
+++.|+++.|..++..+|.+....+..
T Consensus 105 ~i~~i~~~~~~~ll~~~p~~~~~~~~~ 131 (226)
T PRK10402 105 WCLALPMKDCRPLLLNDALFLRKLCKF 131 (226)
T ss_pred EEEEEEHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999999999888765543
No 23
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.55 E-value=7.1e-14 Score=116.28 Aligned_cols=121 Identities=28% Similarity=0.438 Sum_probs=102.7
Q ss_pred hhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCC
Q psy18137 193 SILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDR 272 (320)
Q Consensus 193 ~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~ 272 (320)
+.|..+.......++.......+++|++|+.+|+.++++|+|.+|.++++... .+|++..+..+++|++||+.+++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~-~~G~~~~~~~~~~g~~fg~~~l~~~~ 84 (214)
T COG0664 6 PLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANT-EDGREIILGFLGPGDFFGELALLGGD 84 (214)
T ss_pred cccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEEC-CCCcEEEEEEecCCchhhhHHHhcCC
Confidence 34445566666667788889999999999999999999999999999999664 44777889999999999999999988
Q ss_pred CceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhh
Q psy18137 273 PRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNS 314 (320)
Q Consensus 273 ~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~ 314 (320)
+++++++|.++|+++.++++.|..++...|.+....+....+
T Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~ 126 (214)
T COG0664 85 PRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR 126 (214)
T ss_pred CccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 999999999999999999999999887766666555554433
No 24
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.55 E-value=1e-13 Score=115.32 Aligned_cols=121 Identities=30% Similarity=0.428 Sum_probs=104.6
Q ss_pred hcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcC-----EEEEecCCCCeeehhhhhc
Q psy18137 72 AKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN-----ELVTSVGEGGSFGELALIY 146 (320)
Q Consensus 72 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~-----~~~~~~~~G~~fGe~~ll~ 146 (320)
...+.|..++......+......+.+++|++|+++|++++++|+|.+|.++++... ..+..+++|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 45667777888888888899999999999999999999999999999999998743 2778899999999999999
Q ss_pred CCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 147 GTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 147 ~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
+.++.++++|.++|++|.++++.|..++...|.....+...+.+++
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l 128 (214)
T COG0664 83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRL 128 (214)
T ss_pred CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998776666666555444444
No 25
>KOG0500|consensus
Probab=99.53 E-value=7.9e-14 Score=122.82 Aligned_cols=129 Identities=24% Similarity=0.313 Sum_probs=114.0
Q ss_pred HhhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCC
Q psy18137 181 KRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPS 260 (320)
Q Consensus 181 ~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G 260 (320)
+.+.....++++++|+...+.-+..+.-.++.+.|.||++|++.||.+..+|||..|.+.+.. ++|. .....+..|
T Consensus 301 A~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~---dDg~-t~~~~L~~G 376 (536)
T KOG0500|consen 301 AINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA---DDGV-TVFVTLKAG 376 (536)
T ss_pred HHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEe---cCCc-EEEEEecCC
Confidence 344566779999999999999999999999999999999999999999999999999999873 2333 357889999
Q ss_pred CeecHHhHhc------CCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhh
Q psy18137 261 DYFGEIALLL------DRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYN 313 (320)
Q Consensus 261 ~~fGe~~ll~------~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~ 313 (320)
++|||.++++ +..|+++|+++.=+.+++++++++.+.|..+|+..++..++=+
T Consensus 377 ~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~kgr 435 (536)
T KOG0500|consen 377 SVFGEISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEKGR 435 (536)
T ss_pred ceeeeeEEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999984 4569999999999999999999999999999999998886543
No 26
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.52 E-value=1.9e-13 Score=124.86 Aligned_cols=110 Identities=20% Similarity=0.263 Sum_probs=100.1
Q ss_pred HHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc----CEEEEecCCCCeee
Q psy18137 65 AALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN----NELVTSVGEGGSFG 140 (320)
Q Consensus 65 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~----~~~~~~~~~G~~fG 140 (320)
+.+.++|+++++|++|+++++..++..++.+.|++|++|+++|+..+.+|||++|.|+++.. ...+..+++|++||
T Consensus 4 ~~~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG 83 (413)
T PLN02868 4 ESVVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFG 83 (413)
T ss_pred HHHHHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEee
Confidence 35668899999999999999999999999999999999999999999999999999999873 24677889999999
Q ss_pred hhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhh
Q psy18137 141 ELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMG 176 (320)
Q Consensus 141 e~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~ 176 (320)
+. +.+.++.++++|.++|.++.|+++.|..+...
T Consensus 84 ~~--l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~ 117 (413)
T PLN02868 84 YG--LSGSVHSADVVAVSELTCLVLPHEHCHLLSPK 117 (413)
T ss_pred hh--hCCCCcccEEEECCCEEEEEEcHHHHhhhccc
Confidence 75 67888999999999999999999999987653
No 27
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.51 E-value=3e-13 Score=113.71 Aligned_cols=122 Identities=17% Similarity=0.274 Sum_probs=102.9
Q ss_pred HHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CE--EEEecCCCCeee
Q psy18137 66 ALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NE--LVTSVGEGGSFG 140 (320)
Q Consensus 66 ~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~--~~~~~~~G~~fG 140 (320)
.+..++.+..+-+-+.. .|.+.+..+.|++|++|+.+|++++++|+|++|.|+++.. |+ .+..+.+|++||
T Consensus 9 ~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G 84 (226)
T PRK10402 9 EISHYMSESAFKDCFSF----DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIG 84 (226)
T ss_pred HHHHHHHHcChhhcCCH----HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEE
Confidence 45566776655444443 5777889999999999999999999999999999999872 32 678899999999
Q ss_pred hhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhh
Q psy18137 141 ELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSR 191 (320)
Q Consensus 141 e~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (320)
+.+++.+.++.+++.|.++|.++.++.+.|..++..+|.....+...+.++
T Consensus 85 ~~~~~~~~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~ 135 (226)
T PRK10402 85 EIELIDKDHETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSHK 135 (226)
T ss_pred eehhhcCCCCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877665544444
No 28
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.50 E-value=4.7e-13 Score=113.36 Aligned_cols=121 Identities=12% Similarity=0.146 Sum_probs=101.2
Q ss_pred HhcCccCCCCCHHHHHHHHhcce-eEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---C--EEEEecCCCCeeehhhh
Q psy18137 71 IAKNVLFSHLDENTRSDIFDAMF-PVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---N--ELVTSVGEGGSFGELAL 144 (320)
Q Consensus 71 l~~~~~f~~l~~~~~~~l~~~~~-~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~--~~~~~~~~G~~fGe~~l 144 (320)
+++.+.|..++++++..|..... .+.|++|++|+++||.++++|+|.+|.++++.. + ..+..+.+|++||+..+
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 55666666799999999999886 468999999999999999999999999999873 2 26777899999998766
Q ss_pred hcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 145 IYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 145 l~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
+. .+...++.|.++++++.||++.|.+++..+|.....+...+..++
T Consensus 95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~ 141 (235)
T PRK11161 95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEI 141 (235)
T ss_pred cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 44 455678999999999999999999999999988777665554443
No 29
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.50 E-value=3.2e-13 Score=114.39 Aligned_cols=121 Identities=15% Similarity=0.130 Sum_probs=101.3
Q ss_pred hhhhhcccCcHHHHhhhhcccce-eEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhH
Q psy18137 190 SRVSILESLEKWERLTVADSLEP-VSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIAL 268 (320)
Q Consensus 190 ~~~~~~~~l~~~~~~~l~~~~~~-~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l 268 (320)
++...+..+++.++..|...... ..|++|+.|+.+|+.++++|+|.+|.|+++.. ..+|+...+..+.+|++||+..+
T Consensus 16 ~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~-~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 16 SQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTI-TEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred cccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEE-CCCCCEEEEEeccCCceeccccc
Confidence 34444556999999999988764 68999999999999999999999999999954 45677778888999999998766
Q ss_pred hcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhh
Q psy18137 269 LLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQY 312 (320)
Q Consensus 269 l~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~ 312 (320)
+. .+...+++|.++++++.|+++.|.+++..+|++....+...
T Consensus 95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~ 137 (235)
T PRK11161 95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLM 137 (235)
T ss_pred cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHH
Confidence 54 44567899999999999999999999999998876655544
No 30
>KOG3542|consensus
Probab=99.47 E-value=8.3e-13 Score=120.09 Aligned_cols=248 Identities=15% Similarity=0.166 Sum_probs=172.1
Q ss_pred ccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---
Q psy18137 50 TSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN--- 126 (320)
Q Consensus 50 ~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~--- 126 (320)
++..++++-+++.++......|.....|++|-...++.+|+...++.++...++|+.|+.+.+|||+++|.|-+.-.
T Consensus 18 e~~~k~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~gqi~m 97 (1283)
T KOG3542|consen 18 ESLIKPPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEGQIYM 97 (1283)
T ss_pred hhccCCcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeecceec
Confidence 44567888889999999999999999999999999999999999999999999999999999999999999976320
Q ss_pred -----CE------------------E-E----------------------------------------------------
Q psy18137 127 -----NE------------------L-V---------------------------------------------------- 130 (320)
Q Consensus 127 -----~~------------------~-~---------------------------------------------------- 130 (320)
|+ + +
T Consensus 98 p~~~fgkr~g~~r~~nclllq~semivid~~~e~q~n~ms~~~p~rq~~~~~~~v~~k~erks~~~~~~~~a~~slPad~ 177 (1283)
T KOG3542|consen 98 PYGCFGKRTGQNRTHNCLLLQESEMIVIDYPTEPQSNGMSPRTPPRQIHHSGEPVHQKTERKSAPNMSVDIAMPSLPADP 177 (1283)
T ss_pred CccccccccccccccceeeecccceeeeecCCCccccccCCCCCcccccccCCccccccccccCCccchhccCCCCCCCc
Confidence 00 0 0
Q ss_pred ----------------EecCCCCee----ehhhhhc--C-------------CCcce--------EEeeeceEEEEEEch
Q psy18137 131 ----------------TSVGEGGSF----GELALIY--G-------------TPRAA--------TVRAKTDVKLWGLDR 167 (320)
Q Consensus 131 ----------------~~~~~G~~f----Ge~~ll~--~-------------~~~~~--------tv~a~~~~~~~~i~~ 167 (320)
..-..|..+ |...|.. . -|.++ .....+.+.--..++
T Consensus 178 tklhLt~~phPqvthvSSS~SgcSi~sdsGsSsLsdiyqatEsevGdidl~rLpEtavDSedDe~e~e~ierssdplm~R 257 (1283)
T KOG3542|consen 178 TKLHLTQTPHPQVTHVSSSSSGCSINSDSGSSSLSDIYQATESEVGDIDLARLPETAVDSEDDEGEMESIERSSDPLMDR 257 (1283)
T ss_pred ccccCCCCCCCCCceeccCCCCCceeCCCCchHHHHHHHHhhccccccccccCCCCCCCcccccccchhhhhcCCCccch
Confidence 000000000 0000000 0 00000 000000111122346
Q ss_pred hhHHHHhhhhhHHH----hhHHHHHhhhhhhcccCcHHHHhhhhcccceeEe-CCCCeEEccCCCCCeEEEEEecEEEEE
Q psy18137 168 DSYRRILMGSTIRK----RKLYEEFLSRVSILESLEKWERLTVADSLEPVSF-QDKEAIVRQGQPGDDFYIIVEGTALVL 242 (320)
Q Consensus 168 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~-~~g~~I~~~g~~~~~~yiI~~G~v~v~ 242 (320)
+..+.++.+.|..+ ...+..|.++++.|..++...+..|+..+....+ .+|.+++..|+.-+.+|+|+.|.|++.
T Consensus 258 D~VReCLEKeP~drtddDieqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~ 337 (1283)
T KOG3542|consen 258 DSVRECLEKEPSDRTDDDIEQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVV 337 (1283)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEe
Confidence 66777776665333 3456788899999999999999999987766444 589999999999999999999999998
Q ss_pred EeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEE-ecCeEEEEEehHHHHHhhcCHHH
Q psy18137 243 QNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA-KGPLKCVKLDRARFERVLGPCAD 303 (320)
Q Consensus 243 ~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a-~~~~~v~~i~~~~f~~ll~~~~~ 303 (320)
+. +|+ ...+.-|+.||...-...+...--+++ +.||+..+|...+|.++++...+
T Consensus 338 ~P---dGk---~e~l~mGnSFG~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~vek 393 (1283)
T KOG3542|consen 338 KP---DGK---REELKMGNSFGAEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNTVEK 393 (1283)
T ss_pred cC---CCc---eEEeecccccCCCCCcchhhhhhhhheecccceEEEeehhhHHHHHHHHHh
Confidence 53 333 456777999996544333222222333 57899999999999999877543
No 31
>KOG0499|consensus
Probab=99.46 E-value=2.7e-13 Score=121.70 Aligned_cols=116 Identities=28% Similarity=0.466 Sum_probs=106.0
Q ss_pred HHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEE---cCEEEEecCCCCeeehhhh
Q psy18137 68 SKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYV---NNELVTSVGEGGSFGELAL 144 (320)
Q Consensus 68 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~---~~~~~~~~~~G~~fGe~~l 144 (320)
...|.++.+|++.+...+..++..++...|-+|++||+.||.|..||||-.|.|.|.- ..+++.++..|..|||++|
T Consensus 526 y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~Vl~tL~~GsVFGEISL 605 (815)
T KOG0499|consen 526 YSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKVLVTLKAGSVFGEISL 605 (815)
T ss_pred hhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEEEEEecccceeeeeee
Confidence 4678888999999999999999999999999999999999999999999999999986 3458999999999999988
Q ss_pred hc---CCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhh
Q psy18137 145 IY---GTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRK 183 (320)
Q Consensus 145 l~---~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 183 (320)
+. +.+|+++|+|...|.+++|+++++.+++..+|.....
T Consensus 606 LaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~i 647 (815)
T KOG0499|consen 606 LAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRI 647 (815)
T ss_pred eeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHH
Confidence 76 5688999999999999999999999999988865443
No 32
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.42 E-value=2.4e-12 Score=117.65 Aligned_cols=112 Identities=32% Similarity=0.426 Sum_probs=100.1
Q ss_pred HHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeec
Q psy18137 185 YEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFG 264 (320)
Q Consensus 185 ~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 264 (320)
...+++++++|+.+++..+..++..++...|++|++|+++|+..+.+|+|.+|.|+++... .++ ...+..+++|++||
T Consensus 6 ~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~-~~g-e~~l~~l~~Gd~fG 83 (413)
T PLN02868 6 VVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPA-EEE-SRPEFLLKRYDYFG 83 (413)
T ss_pred HHHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEEC-CCC-cEEEEEeCCCCEee
Confidence 3456789999999999999999999999999999999999999999999999999998654 444 56788999999999
Q ss_pred HHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcC
Q psy18137 265 EIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGP 300 (320)
Q Consensus 265 e~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~ 300 (320)
+. +.+.++.++++|.++|+++.|+++.|..+...
T Consensus 84 ~~--l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~ 117 (413)
T PLN02868 84 YG--LSGSVHSADVVAVSELTCLVLPHEHCHLLSPK 117 (413)
T ss_pred hh--hCCCCcccEEEECCCEEEEEEcHHHHhhhccc
Confidence 75 67888999999999999999999999877644
No 33
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.41 E-value=1.3e-12 Score=107.21 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=84.8
Q ss_pred CCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCC--ceeEEEEecCeEEEEEehHHHH
Q psy18137 218 KEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRP--RAATVVAKGPLKCVKLDRARFE 295 (320)
Q Consensus 218 g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~--~~~tv~a~~~~~v~~i~~~~f~ 295 (320)
|+.|+.+|+..+++|+|.+|.|+++.. ..+|++..+..+++|++||+.+++.+.+ +.++++|.++|+++.|+++.|.
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~-~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~ 79 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRV-YESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVE 79 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEe-CCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHH
Confidence 688999999999999999999999954 5667778899999999999999988764 4578999999999999999999
Q ss_pred HhhcCHHHHHHHHHHhhhh
Q psy18137 296 RVLGPCADILKRNITQYNS 314 (320)
Q Consensus 296 ~ll~~~~~~~~~~~~~~~~ 314 (320)
.++..+|.+....+....+
T Consensus 80 ~l~~~~p~l~~~~~~~l~~ 98 (193)
T TIGR03697 80 KAIEEDPDLSMLLLQGLSS 98 (193)
T ss_pred HHHHHChHHHHHHHHHHHH
Confidence 9999999988877765544
No 34
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.41 E-value=3.2e-12 Score=107.75 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=90.7
Q ss_pred hhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeE
Q psy18137 206 VADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLK 285 (320)
Q Consensus 206 l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~ 285 (320)
+........|++|++|+.+|+.++++|+|.+|.|+++.. ..+|++..+..+.+|++||+. .+.++.++++|.++|.
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~-~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~ 109 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRL-LSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTT 109 (230)
T ss_pred ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEE-CCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceE
Confidence 455667899999999999999999999999999999955 556666778889999999963 4667889999999999
Q ss_pred EEEEehHHHHHhhcCHHHHHHHHHHhhhh
Q psy18137 286 CVKLDRARFERVLGPCADILKRNITQYNS 314 (320)
Q Consensus 286 v~~i~~~~f~~ll~~~~~~~~~~~~~~~~ 314 (320)
++.|+.+.|.+++..+|++....+.....
T Consensus 110 v~~i~~~~f~~l~~~~p~l~~~l~~~l~~ 138 (230)
T PRK09391 110 VRLIKRRSLEQAAATDVDVARALLSLTAG 138 (230)
T ss_pred EEEEEHHHHHHHHhhChHHHHHHHHHHHH
Confidence 99999999999999999998876665443
No 35
>KOG2968|consensus
Probab=99.35 E-value=2.8e-11 Score=113.59 Aligned_cols=233 Identities=21% Similarity=0.348 Sum_probs=164.7
Q ss_pred HHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcC-----EEEEecCCCCeeeh
Q psy18137 67 LSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN-----ELVTSVGEGGSFGE 141 (320)
Q Consensus 67 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~-----~~~~~~~~G~~fGe 141 (320)
+.-+|+++.+| .....-+++++++...+.+|++|++.|++.+.+|+|.+|.+.++..+ ..+..+.+|+.|-.
T Consensus 93 il~~L~~i~~~---EkP~fl~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tS 169 (1158)
T KOG2968|consen 93 ILYMLSAIRIL---EKPVFLELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTS 169 (1158)
T ss_pred HHHHHHHhHhh---ccceeeeechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHh
Confidence 34455555555 22233456689999999999999999999999999999999998732 27888999988754
Q ss_pred hh----hhcCCC---cceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh------------hhcc------
Q psy18137 142 LA----LIYGTP---RAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV------------SILE------ 196 (320)
Q Consensus 142 ~~----ll~~~~---~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~------ 196 (320)
+- .+.+.| +...++|.++|.+..+|...|+.....+|....+..+-.+.++ .+..
T Consensus 170 llSiLd~l~~~ps~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq~vTf~t~~~YLGL~~el~~~e 249 (1158)
T KOG2968|consen 170 LLSILDSLPGFPSLSRTIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQRVTLTTLHNYLGLSNELMSIE 249 (1158)
T ss_pred HHHHHHhccCCCcccceeeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHHHhhHHHHHhhcCcchhhhhhh
Confidence 32 233333 4567899999999999999999999988876655433222111 0000
Q ss_pred ---cCcH------------------------------------------------------------------------H
Q psy18137 197 ---SLEK------------------------------------------------------------------------W 201 (320)
Q Consensus 197 ---~l~~------------------------------------------------------------------------~ 201 (320)
.++. .
T Consensus 250 ~~~~l~~~~g~~~~~~~~~g~s~~~lq~~~~~~~~~~s~~v~~~~~~~n~~dlls~~~~gt~~~~~sv~~l~~~~~~~~~ 329 (1158)
T KOG2968|consen 250 RRKRLDSSEGSTYGNRATIGASSSSLQLLVEIPYSEHSRSVKEGSKLFNAGDLLSDSTRGTRKLFASVHGLLIDALLVRD 329 (1158)
T ss_pred hhccccccccccccCccccCCCCcccccccccccccccccccccccccCCcccccccccCccccccccccccccccchhh
Confidence 0000 0
Q ss_pred HHh-----hh---hcccce---------------------------------------eEe-CCCCeEEccCCCCCeEEE
Q psy18137 202 ERL-----TV---ADSLEP---------------------------------------VSF-QDKEAIVRQGQPGDDFYI 233 (320)
Q Consensus 202 ~~~-----~l---~~~~~~---------------------------------------~~~-~~g~~I~~~g~~~~~~yi 233 (320)
... .+ ...... ..+ +....|.++|+...++|.
T Consensus 330 ~~~~~s~~~ls~~~t~i~~~~~~~~~~~~~~e~~~~~~~~v~~l~~~l~~~~~~si~ll~~~keitiiv~q~a~~~gl~~ 409 (1158)
T KOG2968|consen 330 NIQQGSFSMLSKTGTSIHLEIFEGEHKLVEKEGRKISSDGVDALDLFLGLSNEDSIVLLELEKEITIIVEQGARDVGLYY 409 (1158)
T ss_pred hhhhcccccccccCccchhhccCCcccccccccchhhhhhHHHHHHHhhhcccchhhhhccccceEEEEecccccceeeE
Confidence 000 00 000000 111 122346889999999999
Q ss_pred EEecEEEEEEeccC-----CCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHH
Q psy18137 234 IVEGTALVLQNTVE-----EESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCA 302 (320)
Q Consensus 234 I~~G~v~v~~~~~~-----~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~ 302 (320)
|..|.+.++..... ......+..++||+++|..+++++.+..++++|.++|.++.|++.+|.+++...|
T Consensus 410 ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla~lt~e~S~~tirArsdt~v~~isrs~l~~~~~~~p 483 (1158)
T KOG2968|consen 410 IIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLAILTNEPSFITIRARSDTRVLFISRSDLERFLDAEP 483 (1158)
T ss_pred EeecceeeeehhcccccccccccceEEEecCCceechhhhhcCCcceEEEEEecceEEEEeeHHHHHHHHHhCc
Confidence 99999977644221 1234567889999999999999999999999999999999999999999999888
No 36
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.33 E-value=1.8e-11 Score=101.13 Aligned_cols=84 Identities=24% Similarity=0.341 Sum_probs=74.4
Q ss_pred ccceeEeCCCCeEEccCC--CCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEE
Q psy18137 209 SLEPVSFQDKEAIVRQGQ--PGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKC 286 (320)
Q Consensus 209 ~~~~~~~~~g~~I~~~g~--~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v 286 (320)
.++...|++|++|+.+|+ .++++|+|++|.|+++.. ..+|++..+..+.+|++||+.+++ +.++++++.|.++|.+
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~-~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v 82 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTV-DDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRI 82 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEE-CCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEE
Confidence 456789999999999999 779999999999999954 667888889999999999997654 6778999999999999
Q ss_pred EEEehHHH
Q psy18137 287 VKLDRARF 294 (320)
Q Consensus 287 ~~i~~~~f 294 (320)
+.|+++.|
T Consensus 83 ~~i~~~~~ 90 (202)
T PRK13918 83 DVLNPALM 90 (202)
T ss_pred EEEEHHHc
Confidence 99998776
No 37
>KOG0499|consensus
Probab=99.31 E-value=6.4e-12 Score=113.01 Aligned_cols=116 Identities=26% Similarity=0.385 Sum_probs=103.5
Q ss_pred HHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHH
Q psy18137 187 EFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEI 266 (320)
Q Consensus 187 ~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~ 266 (320)
..+.++.+|++.+...+..+.-.++.+.|-+|+.+++.|+.+..+|||..|+|.|..- .++ ...+..|..|++|||+
T Consensus 527 ~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGG--p~~-~~Vl~tL~~GsVFGEI 603 (815)
T KOG0499|consen 527 SILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGG--PDG-TKVLVTLKAGSVFGEI 603 (815)
T ss_pred hhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecC--CCC-CEEEEEecccceeeee
Confidence 5678889999999999999999999999999999999999999999999999999732 223 3679999999999999
Q ss_pred hHhc---CCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHH
Q psy18137 267 ALLL---DRPRAATVVAKGPLKCVKLDRARFERVLGPCADIL 305 (320)
Q Consensus 267 ~ll~---~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~ 305 (320)
+|+. +..|+++|+|..-|.+++++++++.+++..||+..
T Consensus 604 SLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq 645 (815)
T KOG0499|consen 604 SLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQ 645 (815)
T ss_pred eeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHH
Confidence 9984 45699999999999999999999999999988754
No 38
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.29 E-value=2.5e-11 Score=99.49 Aligned_cols=93 Identities=26% Similarity=0.367 Sum_probs=81.0
Q ss_pred CCeEEecCCCCCeEEEEEeeEEEEEE---cCE--EEEecCCCCeeehhhhhcCCC--cceEEeeeceEEEEEEchhhHHH
Q psy18137 100 GESIITQGDEGDNFYVIDQGEVEVYV---NNE--LVTSVGEGGSFGELALIYGTP--RAATVRAKTDVKLWGLDRDSYRR 172 (320)
Q Consensus 100 g~~I~~~G~~~~~~yiI~~G~v~v~~---~~~--~~~~~~~G~~fGe~~ll~~~~--~~~tv~a~~~~~~~~i~~~~~~~ 172 (320)
|+.|+++|++.+++|+|++|.|+++. +|+ .+..+++|++||+.+++.+.+ +.+++.|.++|.++.||++.|.+
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 78999999999999999999999987 233 578899999999999888765 35789999999999999999999
Q ss_pred HhhhhhHHHhhHHHHHhhhh
Q psy18137 173 ILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~ 192 (320)
++.++|.....+...+.+++
T Consensus 81 l~~~~p~l~~~~~~~l~~~l 100 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSSRI 100 (193)
T ss_pred HHHHChHHHHHHHHHHHHHH
Confidence 99999998887776665544
No 39
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.29 E-value=4.1e-11 Score=101.03 Aligned_cols=104 Identities=19% Similarity=0.196 Sum_probs=88.8
Q ss_pred HHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEE---cCE--EEEecCCCCeeehhhhhcCCCcceEEeeeceEE
Q psy18137 87 DIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYV---NNE--LVTSVGEGGSFGELALIYGTPRAATVRAKTDVK 161 (320)
Q Consensus 87 ~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~---~~~--~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~ 161 (320)
.++.....+.|++|++|+.+|+.++++|+|++|.|+++. +|+ .+..+.+|++||+. .+.++..++.|.++|.
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~ 109 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTT 109 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceE
Confidence 456678899999999999999999999999999999987 233 67778999999964 4567789999999999
Q ss_pred EEEEchhhHHHHhhhhhHHHhhHHHHHhhhhh
Q psy18137 162 LWGLDRDSYRRILMGSTIRKRKLYEEFLSRVS 193 (320)
Q Consensus 162 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (320)
++.|+.+.|.+++..+|.....+...+.+++.
T Consensus 110 v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~ 141 (230)
T PRK09391 110 VRLIKRRSLEQAAATDVDVARALLSLTAGGLR 141 (230)
T ss_pred EEEEEHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 99999999999999999888877665555443
No 40
>KOG3542|consensus
Probab=99.27 E-value=7.7e-12 Score=113.93 Aligned_cols=155 Identities=18% Similarity=0.245 Sum_probs=124.3
Q ss_pred hhccCCCCccCCCCCCCCCCcCCCccceeEeeccCC--CcccccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHH
Q psy18137 10 KLKATSPEETEDLSPLPSQGQQSARRRGGISAEPVS--EEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSD 87 (320)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~is~e~~~--~~~~~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~ 87 (320)
-.|++|+|++++...... +..++. ...++++.+.+..++.++++.+.+|+.+.|.|.+++.+..++
T Consensus 232 EtavDSedDe~e~e~ier------------ssdplm~RD~VReCLEKeP~drtddDieqLLeFMhqlpAFAnmtMSvrRe 299 (1283)
T KOG3542|consen 232 ETAVDSEDDEGEMESIER------------SSDPLMDRDSVRECLEKEPSDRTDDDIEQLLEFMHQLPAFANMTMSVRRE 299 (1283)
T ss_pred CCCCCcccccccchhhhh------------cCCCccchHHHHHHHhcCCcccchHHHHHHHHHHHhchHhhcccHHHHHH
Confidence 456777776666544321 112232 234678889999999999999999999999999999999999
Q ss_pred HHhcceeEEe-CCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEee-eceEEEEEE
Q psy18137 88 IFDAMFPVNC-LPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRA-KTDVKLWGL 165 (320)
Q Consensus 88 l~~~~~~~~~-~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a-~~~~~~~~i 165 (320)
+|..|....+ .+|.+|...|+..|.|++|+.|.|++..++.....+.-|+.||-......+-....+++ +.||++.+|
T Consensus 300 LC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e~l~mGnSFG~~PT~dkqym~G~mRTkVDDCqFVci 379 (1283)
T KOG3542|consen 300 LCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKREELKMGNSFGAEPTPDKQYMIGEMRTKVDDCQFVCI 379 (1283)
T ss_pred HHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceEEeecccccCCCCCcchhhhhhhhheecccceEEEe
Confidence 9999887766 78999999999999999999999999998888888999999997655444433333333 578999999
Q ss_pred chhhHHHHhhh
Q psy18137 166 DRDSYRRILMG 176 (320)
Q Consensus 166 ~~~~~~~~~~~ 176 (320)
...+|..++..
T Consensus 380 aqqDycrIln~ 390 (1283)
T KOG3542|consen 380 AQQDYCRILNT 390 (1283)
T ss_pred ehhhHHHHHHH
Confidence 99999999853
No 41
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.25 E-value=4.8e-11 Score=107.54 Aligned_cols=120 Identities=19% Similarity=0.295 Sum_probs=107.7
Q ss_pred HHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeec
Q psy18137 185 YEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFG 264 (320)
Q Consensus 185 ~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 264 (320)
...|+.+.+.|..++++++..|...+....|.+|+.|+..|.+..++|+|.+|.|.+... +|+ .+..+..||.||
T Consensus 5 ~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~---~g~--v~~~~~~gdlFg 79 (610)
T COG2905 5 PDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSD---GGE--VLDRLAAGDLFG 79 (610)
T ss_pred HHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcC---CCe--eeeeeccCcccc
Confidence 457899999999999999999999999999999999999999999999999999998732 333 588999999999
Q ss_pred HHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHH
Q psy18137 265 EIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNI 309 (320)
Q Consensus 265 e~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~ 309 (320)
-.++++..+....+.+.+|+.|+.||++.|..+..++|++..-..
T Consensus 80 ~~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~ 124 (610)
T COG2905 80 FSSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFL 124 (610)
T ss_pred chhhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHH
Confidence 999999988888899999999999999999999999887654433
No 42
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.22 E-value=1.3e-10 Score=96.08 Aligned_cols=79 Identities=29% Similarity=0.340 Sum_probs=69.4
Q ss_pred cceeEEeCCCCeEEecCC--CCCeEEEEEeeEEEEEEc---CE--EEEecCCCCeeehhhhhcCCCcceEEeeeceEEEE
Q psy18137 91 AMFPVNCLPGESIITQGD--EGDNFYVIDQGEVEVYVN---NE--LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLW 163 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~--~~~~~yiI~~G~v~v~~~---~~--~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~ 163 (320)
.++...|++|++|+++|| +++++|+|++|.|+++.. |+ .+..+.+|++||+.++. +.++.+++.|.++|.++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 567889999999999999 779999999999999873 22 77888999999997654 57889999999999999
Q ss_pred EEchhhH
Q psy18137 164 GLDRDSY 170 (320)
Q Consensus 164 ~i~~~~~ 170 (320)
.|+...|
T Consensus 84 ~i~~~~~ 90 (202)
T PRK13918 84 VLNPALM 90 (202)
T ss_pred EEEHHHc
Confidence 9998876
No 43
>KOG0501|consensus
Probab=99.05 E-value=2.4e-10 Score=102.87 Aligned_cols=120 Identities=23% Similarity=0.310 Sum_probs=106.9
Q ss_pred HHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhc
Q psy18137 67 LSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIY 146 (320)
Q Consensus 67 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~ 146 (320)
-.+.+.++|-|+--++-.++.++..++..+..||+.|++.|+..|.+.||++|+++|..+++.++.++.||.||....-.
T Consensus 546 NRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEVVAILGKGDVFGD~FWK~ 625 (971)
T KOG0501|consen 546 NRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEVVAILGKGDVFGDEFWKE 625 (971)
T ss_pred chhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCcEEEEeecCccchhHHhhh
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999875544
Q ss_pred CC--CcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHH
Q psy18137 147 GT--PRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYE 186 (320)
Q Consensus 147 ~~--~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 186 (320)
+. ...+.++|++.|.+..|.++.+.+.+.-+..+...+-.
T Consensus 626 ~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaR 667 (971)
T KOG0501|consen 626 NTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFAR 667 (971)
T ss_pred hhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhh
Confidence 32 34688999999999999999999999877777665433
No 44
>KOG0501|consensus
Probab=98.33 E-value=5.8e-07 Score=81.62 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=90.8
Q ss_pred HhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHh
Q psy18137 188 FLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIA 267 (320)
Q Consensus 188 ~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ 267 (320)
..+..|.|+--++--+..|+-.+......||+.|++.|+..+.+.||.+|..++.+.. ..++.|++||+||+..
T Consensus 549 VFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDD------EVVAILGKGDVFGD~F 622 (971)
T KOG0501|consen 549 VFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDD------EVVAILGKGDVFGDEF 622 (971)
T ss_pred hhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecC------cEEEEeecCccchhHH
Confidence 3444566666677777788888888999999999999999999999999999998532 3589999999999875
Q ss_pred HhcCC--CceeEEEEecCeEEEEEehHHHHHhhcCHHHH
Q psy18137 268 LLLDR--PRAATVVAKGPLKCVKLDRARFERVLGPCADI 304 (320)
Q Consensus 268 ll~~~--~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~ 304 (320)
--.+. ...++|+|.+=|.+..|.++.+.+.|.-|..+
T Consensus 623 WK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAF 661 (971)
T KOG0501|consen 623 WKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAF 661 (971)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHH
Confidence 54432 26689999999999999999999987665443
No 45
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=98.28 E-value=4.2e-05 Score=58.13 Aligned_cols=105 Identities=11% Similarity=0.084 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHhc-ceeEEeCCCCeEEecCCCC-CeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcC-----CCcc
Q psy18137 79 HLDENTRSDIFDA-MFPVNCLPGESIITQGDEG-DNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYG-----TPRA 151 (320)
Q Consensus 79 ~l~~~~~~~l~~~-~~~~~~~~g~~I~~~G~~~-~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~-----~~~~ 151 (320)
+.+..+.+.|+.+ .+.....+|+.-.-+|... |.+-++++|.+.|+.++..+..+.|-++.....+... ..-.
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~qFlDSPEW~s~~~s~~~~FQ 93 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPYQFLDSPEWESLRPSEDDKFQ 93 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeecccccccChhhhccccCCCCeEE
Confidence 4588999999997 7788999999999999764 9999999999999999999999999888876555443 3446
Q ss_pred eEEeeeceEEEEEEchhhHHHHhhhhhHHHhh
Q psy18137 152 ATVRAKTDVKLWGLDRDSYRRILMGSTIRKRK 183 (320)
Q Consensus 152 ~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 183 (320)
.|+.|.++|..+..+|+.+..++.+++....-
T Consensus 94 VTitA~~~Cryl~W~R~kL~~~l~~~~~L~~v 125 (153)
T PF04831_consen 94 VTITAEEDCRYLCWPREKLYLLLAKDPFLAAV 125 (153)
T ss_pred EEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHH
Confidence 89999999999999999999999998877543
No 46
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.91 E-value=0.00022 Score=57.90 Aligned_cols=94 Identities=6% Similarity=0.025 Sum_probs=75.8
Q ss_pred HHHHHhcceeEEeCCCCeE-EecCCCCCeEEEEEeeEEEEEEcCE-EEEecCCCCeeehhhhhcCCCcceEEeeeceEEE
Q psy18137 85 RSDIFDAMFPVNCLPGESI-ITQGDEGDNFYVIDQGEVEVYVNNE-LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKL 162 (320)
Q Consensus 85 ~~~l~~~~~~~~~~~g~~I-~~~G~~~~~~yiI~~G~v~v~~~~~-~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~ 162 (320)
.+.+....+...+.+|..+ +........+|++++|.+.+...+. .+........||-...+.+....+.++|.++|++
T Consensus 15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~c~~ 94 (207)
T PRK11832 15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREENVLIGITQAPYIMGLADGLMKNDIPYKLISEGNCTG 94 (207)
T ss_pred HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCCeEEEeccCCeEeecccccCCCCceEEEEEcCccEE
Confidence 4556667889999999997 5444444779999999999965443 6677788888998776777666788999999999
Q ss_pred EEEchhhHHHHhhhhh
Q psy18137 163 WGLDRDSYRRILMGST 178 (320)
Q Consensus 163 ~~i~~~~~~~~~~~~~ 178 (320)
+.||.+.|.+++.+..
T Consensus 95 ~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 95 YHLPAKQTITLIEQNQ 110 (207)
T ss_pred EEeeHHHHHHHHHHhc
Confidence 9999999999998654
No 47
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.47 E-value=0.0023 Score=52.12 Aligned_cols=93 Identities=13% Similarity=0.197 Sum_probs=73.1
Q ss_pred hhhcccceeEeCCCCeE-EccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecC
Q psy18137 205 TVADSLEPVSFQDKEAI-VRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGP 283 (320)
Q Consensus 205 ~l~~~~~~~~~~~g~~I-~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~ 283 (320)
.+..+.+...+.+|..+ +-.......+|+|.+|.|.+. .. ++ ..+.....-.+||-...+.+....+.++|.++
T Consensus 17 ~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~--d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~ 91 (207)
T PRK11832 17 CLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-RE--EN--VLIGITQAPYIMGLADGLMKNDIPYKLISEGN 91 (207)
T ss_pred HhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ec--CC--eEEEeccCCeEeecccccCCCCceEEEEEcCc
Confidence 34456667889999986 544444478999999999994 32 22 56778888899998777766666789999999
Q ss_pred eEEEEEehHHHHHhhcCHH
Q psy18137 284 LKCVKLDRARFERVLGPCA 302 (320)
Q Consensus 284 ~~v~~i~~~~f~~ll~~~~ 302 (320)
|+++.|+.++|.+++.+..
T Consensus 92 c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 92 CTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred cEEEEeeHHHHHHHHHHhc
Confidence 9999999999999998754
No 48
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.51 E-value=0.064 Score=41.09 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=73.7
Q ss_pred CcHHHHhhhhcc-cceeEeCCCCeEEccCC-CCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhH--h---c
Q psy18137 198 LEKWERLTVADS-LEPVSFQDKEAIVRQGQ-PGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIAL--L---L 270 (320)
Q Consensus 198 l~~~~~~~l~~~-~~~~~~~~g~~I~~~g~-~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l--l---~ 270 (320)
.+...-.+++.+ .+.....+|+.--.+|. +.+.+-++++|.++|..+ | ..+-.+.|-++..--+. . .
T Consensus 15 Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~----g--~fLH~I~p~qFlDSPEW~s~~~s~ 88 (153)
T PF04831_consen 15 VSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD----G--RFLHYIYPYQFLDSPEWESLRPSE 88 (153)
T ss_pred CCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC----C--EeeEeecccccccChhhhccccCC
Confidence 455555667666 56688889988777774 459999999999999854 2 24666677777653222 2 2
Q ss_pred CCCceeEEEEecCeEEEEEehHHHHHhhcCHH
Q psy18137 271 DRPRAATVVAKGPLKCVKLDRARFERVLGPCA 302 (320)
Q Consensus 271 ~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~ 302 (320)
+....+|++|.++|..++=+|+.+..++...|
T Consensus 89 ~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~ 120 (153)
T PF04831_consen 89 DDKFQVTITAEEDCRYLCWPREKLYLLLAKDP 120 (153)
T ss_pred CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCH
Confidence 34578999999999999999999999998854
No 49
>PRK11171 hypothetical protein; Provisional
Probab=94.04 E-value=0.7 Score=39.78 Aligned_cols=159 Identities=12% Similarity=0.181 Sum_probs=85.3
Q ss_pred cceeEEeCCCCeEEecCCC--CCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchh
Q psy18137 91 AMFPVNCLPGESIITQGDE--GDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRD 168 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~--~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~ 168 (320)
.+....+.+|...-..... .+.+++|++|.+.+..+++ ...+.+||++=-. .+.++...-...+++.++.+.+
T Consensus 62 ~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~-~~~L~~GDsi~~p---~~~~H~~~N~g~~~a~~l~v~~- 136 (266)
T PRK11171 62 SQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGK-THALSEGGYAYLP---PGSDWTLRNAGAEDARFHWIRK- 136 (266)
T ss_pred EEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCE-EEEECCCCEEEEC---CCCCEEEEECCCCCEEEEEEEc-
Confidence 4456678888754333322 4789999999999998764 5779999986421 2233333333344566665521
Q ss_pred hHHHHhhh-hhHHHhhHHHHHhhhhhh--------c-ccCcHHHHhhhhcccceeEeCCCCeEEc-cCCCCCeEEEEEec
Q psy18137 169 SYRRILMG-STIRKRKLYEEFLSRVSI--------L-ESLEKWERLTVADSLEPVSFQDKEAIVR-QGQPGDDFYIIVEG 237 (320)
Q Consensus 169 ~~~~~~~~-~~~~~~~~~~~~l~~~~~--------~-~~l~~~~~~~l~~~~~~~~~~~g~~I~~-~g~~~~~~yiI~~G 237 (320)
.|...-.. .|......... ....+. . ..+++... .....+....+++|..+-. ........++|++|
T Consensus 137 ~y~~~~~~~~p~~~~~~~~d-~~~~~~~g~~g~~~~~~~~~p~~~-~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G 214 (266)
T PRK11171 137 RYEPVEGHEAPEAFVGNESD-IEPIPMPGTDGVWATTRLVDPEDL-RFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEG 214 (266)
T ss_pred CCeEcCCCCCCCeEecchhc-ccccccCCCCCeEEEEEeeCchhc-CCCcEEEEEEECCCCEEccCcCCCceEEEEEEeC
Confidence 11111100 11100000000 000000 0 01111111 1112455577888877765 35666799999999
Q ss_pred EEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 238 TALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 238 ~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
+..+... + ....+.+||++
T Consensus 215 ~~~~~~~----~---~~~~l~~GD~i 233 (266)
T PRK11171 215 KGVYRLN----N---DWVEVEAGDFI 233 (266)
T ss_pred EEEEEEC----C---EEEEeCCCCEE
Confidence 9998732 1 35778999986
No 50
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=92.79 E-value=1 Score=33.78 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=43.7
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEE-EcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEE
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVY-VNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGL 165 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~-~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i 165 (320)
+....+++|..+-..-.....+++|++|++.+. ..+.....+.+||++-- .......+.+.+++.++++
T Consensus 37 ~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~-----~~~~~H~~~N~e~~~~l~v 106 (125)
T PRK13290 37 FHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEVHPIRPGTMYAL-----DKHDRHYLRAGEDMRLVCV 106 (125)
T ss_pred EEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEEEEeCCCeEEEE-----CCCCcEEEEcCCCEEEEEE
Confidence 345678888755322112246999999999998 55456688999998752 2222334444467666554
No 51
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=92.18 E-value=0.89 Score=29.86 Aligned_cols=44 Identities=27% Similarity=0.465 Sum_probs=33.0
Q ss_pred EEeCCCCeEEecCCCCC-eEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 95 VNCLPGESIITQGDEGD-NFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 95 ~~~~~g~~I~~~G~~~~-~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
..+++|+.+-..-.... .+++|++|++.+..+++ ...+++|+.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE-RVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE-EEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE-EeEccCCEEE
Confidence 46777776555544555 89999999999997665 6678888865
No 52
>KOG2378|consensus
Probab=90.81 E-value=0.2 Score=45.17 Aligned_cols=43 Identities=40% Similarity=0.714 Sum_probs=39.0
Q ss_pred CCCeeehhhhhcCCCcceEEeeece-EEEEEEchhhHHHHhhhh
Q psy18137 135 EGGSFGELALIYGTPRAATVRAKTD-VKLWGLDRDSYRRILMGS 177 (320)
Q Consensus 135 ~G~~fGe~~ll~~~~~~~tv~a~~~-~~~~~i~~~~~~~~~~~~ 177 (320)
.|+.||.+++....||.++++..++ |.+++.++.+|.+|+.+-
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~v 44 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDV 44 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhh
Confidence 5899999999999999999988765 999999999999999643
No 53
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=88.77 E-value=6.8 Score=33.60 Aligned_cols=158 Identities=19% Similarity=0.240 Sum_probs=82.1
Q ss_pred cceeEEeCCCCeEEe-cCCCC-CeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchh
Q psy18137 91 AMFPVNCLPGESIIT-QGDEG-DNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRD 168 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~-~G~~~-~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~ 168 (320)
.+....+++|.-.-. ....+ +.+.+|++|++.+..+++. ..+.+|+++--. .+.++...-...+++.++.+.+.
T Consensus 59 ~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~~-~~L~~Gd~~y~p---a~~~H~~~N~~~~~a~~l~v~k~ 134 (260)
T TIGR03214 59 VQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGET-HELREGGYAYLP---PGSKWTLANAQAEDARFFLYKKR 134 (260)
T ss_pred EEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCEE-EEECCCCEEEEC---CCCCEEEEECCCCCEEEEEEEee
Confidence 345667777653321 12333 7899999999999987754 589999987421 12222222223345665544322
Q ss_pred hHHHH---------hhhhhHHHhhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEE-ccCCCCCeEEEEEecE
Q psy18137 169 SYRRI---------LMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIV-RQGQPGDDFYIIVEGT 238 (320)
Q Consensus 169 ~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~-~~g~~~~~~yiI~~G~ 238 (320)
|+.+ +.+.......-+.. ...+..-.-+ +.+... ...+....+.+|..+- ..-......++|++|+
T Consensus 135 -y~~~~g~~~~~~vvg~~~dv~~~~~~g-~~~~~~~~ll-p~~~~~-~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~ 210 (260)
T TIGR03214 135 -YQPVEGLHAPELVVGNEKDIEPEPYEG-MDDVILTTLL-PKELAF-DMNVHILSFEPGASHPYIETHVMEHGLYVLEGK 210 (260)
T ss_pred -eEEcCCCCCCCeeecCHHHCCccccCC-CCcEEEEEeC-chhcCC-CcEEEEEEECCCcccCCcccccceeEEEEEece
Confidence 1111 00000000000000 0000110111 222222 3345567888998884 4555566788999999
Q ss_pred EEEEEeccCCCccEEEEEeCCCCee
Q psy18137 239 ALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 239 v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
-.+..+ + ....+.+||++
T Consensus 211 G~~~~~----g---~~~~V~~GD~i 228 (260)
T TIGR03214 211 GVYNLD----N---NWVPVEAGDYI 228 (260)
T ss_pred EEEEEC----C---EEEEecCCCEE
Confidence 977532 2 35678899986
No 54
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=86.31 E-value=1.5 Score=29.46 Aligned_cols=42 Identities=24% Similarity=0.451 Sum_probs=30.8
Q ss_pred eCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 97 CLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 97 ~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
..+|..-..... +.+..|++|.+.+...+.....+.+||.|-
T Consensus 14 ~~pg~~~~~~~~--~E~~~vleG~v~it~~~G~~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYPE--DEFFYVLEGEVTITDEDGETVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEESS--EEEEEEEEEEEEEEETTTEEEEEETTEEEE
T ss_pred ECCceeEeeCCC--CEEEEEEEeEEEEEECCCCEEEEcCCcEEE
Confidence 345554444333 788899999999999666668899999874
No 55
>KOG2378|consensus
Probab=86.23 E-value=0.58 Score=42.34 Aligned_cols=45 Identities=36% Similarity=0.615 Sum_probs=40.2
Q ss_pred CCCeecHHhHhcCCCceeEEEEecC-eEEEEEehHHHHHhhcCHHH
Q psy18137 259 PSDYFGEIALLLDRPRAATVVAKGP-LKCVKLDRARFERVLGPCAD 303 (320)
Q Consensus 259 ~G~~fGe~~ll~~~~~~~tv~a~~~-~~v~~i~~~~f~~ll~~~~~ 303 (320)
.||-||-.++.++.||.++++..++ |..+.+++.+|..++.....
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~vEa 46 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDVEA 46 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhhhh
Confidence 4899999999999999999999875 99999999999999877543
No 56
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=86.19 E-value=3.3 Score=31.17 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=36.8
Q ss_pred cceeEEeCCCCeE-EecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 91 AMFPVNCLPGESI-ITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 91 ~~~~~~~~~g~~I-~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
......+++|+-+ .+-....+.+|+|++|+..+..+++ ...+++|+++
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~-~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE-EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE-EEEecCCCEE
Confidence 5566778888874 6666668999999999999998864 4447777765
No 57
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=84.94 E-value=7 Score=25.41 Aligned_cols=65 Identities=18% Similarity=0.361 Sum_probs=39.4
Q ss_pred eEeCCCCeEEccCCCCC-eEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecC--eEEEEE
Q psy18137 213 VSFQDKEAIVRQGQPGD-DFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGP--LKCVKL 289 (320)
Q Consensus 213 ~~~~~g~~I~~~g~~~~-~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~--~~v~~i 289 (320)
..+.+|...-..-.... .+++|++|++.+... + ....+.+|+.+ +........+...++ +.++.|
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~----~---~~~~l~~Gd~~-----~i~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVD----G---ERVELKPGDAI-----YIPPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEET----T---EEEEEETTEEE-----EEETTSEEEEEEESSSEEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEc----c---EEeEccCCEEE-----EECCCCeEEEEECCCCCEEEEEE
Confidence 35666765444444444 899999999998732 1 26778899987 223334445555554 555443
No 58
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=84.70 E-value=4 Score=33.76 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=55.4
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecC-CCCeeeh---hhhhcCCCcceEEeeeceEEEEEEc
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVG-EGGSFGE---LALIYGTPRAATVRAKTDVKLWGLD 166 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~-~G~~fGe---~~ll~~~~~~~tv~a~~~~~~~~i~ 166 (320)
-+....+.+|+..-..-..-+...+++.|++.+...+.....++ .-+.|-. -++.-...+.+++.|.+++++...+
T Consensus 30 GF~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~~vAvC~ 109 (270)
T COG3718 30 GFRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDLEVAVCS 109 (270)
T ss_pred EEEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEeecceEEEEEe
Confidence 35567788999887666666788899999999988777666665 2333332 1233344567899999999888776
Q ss_pred hhh
Q psy18137 167 RDS 169 (320)
Q Consensus 167 ~~~ 169 (320)
.-.
T Consensus 110 AP~ 112 (270)
T COG3718 110 APG 112 (270)
T ss_pred CCC
Confidence 554
No 59
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=83.78 E-value=5.4 Score=31.21 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=40.3
Q ss_pred EccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehH
Q psy18137 222 VRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRA 292 (320)
Q Consensus 222 ~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~ 292 (320)
+...+ .+.+|++++|.+.+..... ++ .....+++||+| +-...-..+.++..++.++.|.+.
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v~d~--g~-~~~v~L~eGd~f-----lvP~gvpHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKVTEE--GK-REDVPIREGDIF-----LLPPHVPHSPQRPAGSIGLVIERK 104 (159)
T ss_pred cccCC-CceEEEEEcceEEEEEEcC--Cc-EEEEEECCCCEE-----EeCCCCCcccccCCCcEEEEEEeC
Confidence 45444 6899999999998864432 22 346789999998 222223334445567777777665
No 60
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=82.18 E-value=3.4 Score=31.15 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=40.9
Q ss_pred cceeEEeCCCCeEEecCCC-CCeEEEEEeeEEEEEEcCEEEEecCCCCeeeh
Q psy18137 91 AMFPVNCLPGESIITQGDE-GDNFYVIDQGEVEVYVNNELVTSVGEGGSFGE 141 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~-~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe 141 (320)
.+....|.+|..+-..-.+ .+...+|++|.+.+..+ .....+.+||++-.
T Consensus 44 ~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~~~l~~Gd~i~i 94 (131)
T COG1917 44 SVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEKKELKAGDVIII 94 (131)
T ss_pred EEEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCceEecCCCEEEE
Confidence 3557788999988777666 67899999999999988 56777999998754
No 61
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=82.10 E-value=14 Score=27.70 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=39.5
Q ss_pred eeEeCCCCeEEccCCCCCeEEEEEecEEEEE-EeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEE
Q psy18137 212 PVSFQDKEAIVRQGQPGDDFYIIVEGTALVL-QNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKL 289 (320)
Q Consensus 212 ~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~-~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i 289 (320)
...+.+|..+-.--.....+++|++|++.+. .. + + ....|.+||++- ........+.+.+++.++++
T Consensus 39 ~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~--~-g---~~~~L~aGD~i~-----~~~~~~H~~~N~e~~~~l~v 106 (125)
T PRK13290 39 ETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLA--T-G---EVHPIRPGTMYA-----LDKHDRHYLRAGEDMRLVCV 106 (125)
T ss_pred EEEECCCCcccceeCCCEEEEEEEeCEEEEEEcC--C-C---EEEEeCCCeEEE-----ECCCCcEEEEcCCCEEEEEE
Confidence 3466777644221111246899999999986 21 1 1 257799999983 22222334444477777765
No 62
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=77.16 E-value=11 Score=30.03 Aligned_cols=59 Identities=15% Similarity=0.279 Sum_probs=38.0
Q ss_pred CCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehH
Q psy18137 226 QPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRA 292 (320)
Q Consensus 226 ~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~ 292 (320)
+..+.+|++++|.+.+.... +++ .....+.+||+| ++ ...-..+-++..++.++.|.+.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d--~g~-~~~v~L~eGd~f----ll-P~gvpHsP~r~~~tv~LviE~~ 110 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQE--DGK-RRDVPIREGEMF----LL-PPHVPHSPQREAGSIGLVIERK 110 (177)
T ss_pred CCCceEEEEECCeEEEEEEc--CCc-eeeEEECCCCEE----Ee-CCCCCcCCccCCCeEEEEEEeC
Confidence 45678899999999887543 222 346779999998 23 2222233344567777777654
No 63
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=76.61 E-value=8.9 Score=30.02 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=38.8
Q ss_pred eEEecCCCCCeEEEEEeeEEEEEEc--CE-EEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchh
Q psy18137 102 SIITQGDEGDNFYVIDQGEVEVYVN--NE-LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRD 168 (320)
Q Consensus 102 ~I~~~G~~~~~~yiI~~G~v~v~~~--~~-~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~ 168 (320)
..++..+ .+.+|.+++|.+.+... ++ ....+++|++|=-..-+. .+-.+..++.++.|.+.
T Consensus 41 ~d~H~~~-tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvp-----HsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 41 TDFHDDP-GEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVP-----HSPQRPAGSIGLVIERK 104 (159)
T ss_pred cccccCC-CceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCC-----cccccCCCcEEEEEEeC
Confidence 3355544 79999999999998543 22 467799999884322222 23334466777766554
No 64
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=73.45 E-value=24 Score=28.35 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=39.9
Q ss_pred EEeCCCCeEEe-cCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEE
Q psy18137 95 VNCLPGESIIT-QGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGL 165 (320)
Q Consensus 95 ~~~~~g~~I~~-~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i 165 (320)
..+.+|...-. .-..++.+++|++|++.+..++ ....+.+||++=-- .+.++.......+++.++.+
T Consensus 112 ~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~-~~~~l~~Gd~~~~~---~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 112 ETYQPGTTTGERIKHQGEEIGTVLEGEIVLTING-QDYHLVAGQSYAIN---TGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred EEccCCCCcccccccCCcEEEEEEEeEEEEEECC-EEEEecCCCEEEEc---CCCCeeeeCCCCCCeEEEEE
Confidence 35566653221 1134578999999999998877 45679999976421 13344333333444555554
No 65
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=73.14 E-value=12 Score=29.78 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=40.6
Q ss_pred CCC-CeEEecCCCCCeEEEEEeeEEEEEE--cCE-EEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchh
Q psy18137 98 LPG-ESIITQGDEGDNFYVIDQGEVEVYV--NNE-LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRD 168 (320)
Q Consensus 98 ~~g-~~I~~~G~~~~~~yiI~~G~v~v~~--~~~-~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~ 168 (320)
-+| ..-++. +..+.+|.+++|.+.+.. +++ ....+.+|++|=-.+-+... -++..++..+.|.+.
T Consensus 42 Gpn~r~d~H~-~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHs-----P~r~~~tv~LviE~~ 110 (177)
T PRK13264 42 GPNARTDFHY-DPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHS-----PQREAGSIGLVIERK 110 (177)
T ss_pred cCCccccccc-CCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcC-----CccCCCeEEEEEEeC
Confidence 445 334444 457899999999998876 443 56779999988432222222 233566777776544
No 66
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=71.40 E-value=31 Score=26.44 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=34.6
Q ss_pred ceeEeCCCCeEEccCC-CCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 211 EPVSFQDKEAIVRQGQ-PGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 211 ~~~~~~~g~~I~~~g~-~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
....+.+|...-..-. ....+++|++|+..+.... .++.......+.+||+|
T Consensus 33 ~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~-~~~~~~~~~~l~~GD~~ 85 (146)
T smart00835 33 ARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVD-PNGNKVYDARLREGDVF 85 (146)
T ss_pred EEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEe-CCCCeEEEEEecCCCEE
Confidence 3445667766443332 3568999999999987443 23344557889999988
No 67
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=69.84 E-value=13 Score=25.85 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=42.6
Q ss_pred ccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEE
Q psy18137 209 SLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVK 288 (320)
Q Consensus 209 ~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~ 288 (320)
......+.+|..+=.-...+....+|++|.+..- + ..+.+|+++ ........+..+.++|.++.
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d~-----~------~~~~~G~~~-----~~p~g~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSDG-----D------GRYGAGDWL-----RLPPGSSHTPRSDEGCLILV 88 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEET-----T------CEEETTEEE-----EE-TTEEEEEEESSCEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEEC-----C------ccCCCCeEE-----EeCCCCccccCcCCCEEEEE
Confidence 4556778888877765667777788999998631 1 235888887 33444566777888888875
No 68
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=66.35 E-value=17 Score=27.88 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=36.0
Q ss_pred cceeEEeCCCCeEEecCC-CCCeEEEEEeeEEEEEEcCE-----EEEecCCCCeee
Q psy18137 91 AMFPVNCLPGESIITQGD-EGDNFYVIDQGEVEVYVNNE-----LVTSVGEGGSFG 140 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~-~~~~~yiI~~G~v~v~~~~~-----~~~~~~~G~~fG 140 (320)
.+....+.+|...-..-. ..+.+++|++|...+...++ ....+.+|+.+-
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 445567788887654432 35789999999999976443 477799999774
No 69
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=64.60 E-value=17 Score=25.27 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=41.1
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEE
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWG 164 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~ 164 (320)
......+.+|..+=.....+....+|++|.+.. .+ ..+.+|+++= .......+..+.+.|.+|.
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d--~~---~~~~~G~~~~-----~p~g~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD--GD---GRYGAGDWLR-----LPPGSSHTPRSDEGCLILV 88 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE--TT---CEEETTEEEE-----E-TTEEEEEEESSCEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE--CC---ccCCCCeEEE-----eCCCCccccCcCCCEEEEE
Confidence 456778899988877666777888999999974 22 2346666542 2223345666777888775
No 70
>PRK11171 hypothetical protein; Provisional
Probab=63.37 E-value=29 Score=29.86 Aligned_cols=49 Identities=20% Similarity=0.057 Sum_probs=39.3
Q ss_pred cceeEEeCCCCeEEec-CCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 91 AMFPVNCLPGESIITQ-GDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~-G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
.+....+++|..+-.. .....+.++|++|++.+..++ ....+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~-~~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNN-DWVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECC-EEEEeCCCCEEE
Confidence 6667889999988764 555689999999999998766 566689999763
No 71
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=63.08 E-value=71 Score=24.93 Aligned_cols=56 Identities=27% Similarity=0.367 Sum_probs=37.4
Q ss_pred hhhhcccceeEeCCCCeEEccC---------CCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHH
Q psy18137 204 LTVADSLEPVSFQDKEAIVRQG---------QPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEI 266 (320)
Q Consensus 204 ~~l~~~~~~~~~~~g~~I~~~g---------~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~ 266 (320)
..|-+.+-...+-.|-.++..| ...+.|++|++|+..+... + ....+++||+.|--
T Consensus 31 ~~lG~~~Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d---~----~e~~lrpGD~~gFp 95 (161)
T COG3837 31 TRLGDALGLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED---G----GETRLRPGDSAGFP 95 (161)
T ss_pred hhhhhhcChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEEC---C----eeEEecCCceeecc
Confidence 4455555555555555555444 4457899999999988732 1 25679999999843
No 72
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=62.34 E-value=17 Score=28.24 Aligned_cols=49 Identities=27% Similarity=0.184 Sum_probs=35.1
Q ss_pred eEEeCCCC--eEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhh
Q psy18137 94 PVNCLPGE--SIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELA 143 (320)
Q Consensus 94 ~~~~~~g~--~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ 143 (320)
...++||. ..++-....+.|+.|++|+..+..++ ....+++||+.|--+
T Consensus 46 ~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~-~e~~lrpGD~~gFpA 96 (161)
T COG3837 46 LEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG-GETRLRPGDSAGFPA 96 (161)
T ss_pred eEEeCCCCccccccccccCceEEEEEcCceEEEECC-eeEEecCCceeeccC
Confidence 44455543 34444566799999999999887766 556689999988544
No 73
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=61.69 E-value=48 Score=31.19 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=42.4
Q ss_pred ceeEEeCCCCeEE-ecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEE
Q psy18137 92 MFPVNCLPGESII-TQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGL 165 (320)
Q Consensus 92 ~~~~~~~~g~~I~-~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i 165 (320)
+....++||..+= +.....+..++|++|++.+..+++. ..+++|+++--. .+.++...-...++++++.+
T Consensus 378 ~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~~-~~l~~GDsi~ip---~~~~H~~~N~g~~~~~~i~v 448 (468)
T TIGR01479 378 VKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDET-LLLTENESTYIP---LGVIHRLENPGKIPLELIEV 448 (468)
T ss_pred EEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCEE-EEecCCCEEEEC---CCCcEEEEcCCCCCEEEEEE
Confidence 3456778887542 2233345666899999999988855 579999987421 22333333333445555544
No 74
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=59.23 E-value=26 Score=30.06 Aligned_cols=77 Identities=19% Similarity=0.088 Sum_probs=49.9
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcC-EEEEecCCCCeeehh--hhhcCCCcceEEeeeceEEEEEEchh
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN-ELVTSVGEGGSFGEL--ALIYGTPRAATVRAKTDVKLWGLDRD 168 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~-~~~~~~~~G~~fGe~--~ll~~~~~~~tv~a~~~~~~~~i~~~ 168 (320)
+....+.+|+.+-..-+.-+...|+++|.+.+..++ .....-..-+.|... ++.-......++.|.++++++..+..
T Consensus 29 ~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~~~sap 108 (261)
T PF04962_consen 29 FGVLRLEAGESLEFELERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFAVCSAP 108 (261)
T ss_dssp CCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEEEEEEE
T ss_pred eEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEEEEccc
Confidence 445677777777655444566788899999999988 444444556677543 23335556688899888998876544
No 75
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=55.84 E-value=1.2e+02 Score=28.42 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=48.2
Q ss_pred hcccCcHHHHhhhhcc--cceeEeCCCCeEE-ccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhc
Q psy18137 194 ILESLEKWERLTVADS--LEPVSFQDKEAIV-RQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLL 270 (320)
Q Consensus 194 ~~~~l~~~~~~~l~~~--~~~~~~~~g~~I~-~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~ 270 (320)
....|........... +....+.+|..+- ......+..++|++|++.+... + ....+.+||.+-- -.
T Consensus 360 ~~~pWG~~~~~~~~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d----g---~~~~l~~GDsi~i---p~ 429 (468)
T TIGR01479 360 VYRPWGKYDSIDQGDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG----D---ETLLLTENESTYI---PL 429 (468)
T ss_pred EECCCCceEEEecCCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC----C---EEEEecCCCEEEE---CC
Confidence 3445544444333332 2345667776432 2233345566899999999743 1 2567999999831 12
Q ss_pred CCCceeEEEEecCeEEEEEe
Q psy18137 271 DRPRAATVVAKGPLKCVKLD 290 (320)
Q Consensus 271 ~~~~~~tv~a~~~~~v~~i~ 290 (320)
+.++...-...++++++.+.
T Consensus 430 ~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 430 GVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred CCcEEEEcCCCCCEEEEEEE
Confidence 33444333445567776664
No 76
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=53.34 E-value=57 Score=26.51 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=32.3
Q ss_pred ceeEEeCCCCeE---------EecCCCCCeEEEEEeeEEEEEEcCE----EEEecCCCCee
Q psy18137 92 MFPVNCLPGESI---------ITQGDEGDNFYVIDQGEVEVYVNNE----LVTSVGEGGSF 139 (320)
Q Consensus 92 ~~~~~~~~g~~I---------~~~G~~~~~~yiI~~G~v~v~~~~~----~~~~~~~G~~f 139 (320)
+-...+.+|.+. ++.......+|+|++|+..+...+. ....+.+|+.+
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v 130 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVV 130 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEE
Confidence 335566777753 3333334599999999999876432 35678888865
No 77
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=53.29 E-value=83 Score=29.70 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=42.9
Q ss_pred cceeEEeCCCCeE-EecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEE
Q psy18137 91 AMFPVNCLPGESI-ITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGL 165 (320)
Q Consensus 91 ~~~~~~~~~g~~I-~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i 165 (320)
.+....++||..+ .+........++|++|++.+..+++ ...+.+||++-- -.+.++...-...++++++.+
T Consensus 386 ~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~-~~~L~~GDSi~i---p~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 386 QVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD-IKLLGENESIYI---PLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred EEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCE-EEEecCCCEEEE---CCCCcEEEEcCCCCCEEEEEE
Confidence 3455677888644 1223344578889999999998884 566889987632 123333333333345555554
No 78
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=52.90 E-value=94 Score=23.16 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=33.0
Q ss_pred cceeEeCCCCeE-EccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 210 LEPVSFQDKEAI-VRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 210 ~~~~~~~~g~~I-~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
+....+++|+-+ ..-....+.+|+|++|...+... + ....+++|+++
T Consensus 38 ~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~----~---~~~~v~~gd~~ 85 (127)
T COG0662 38 IARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG----G---EEVEVKAGDSV 85 (127)
T ss_pred EEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC----C---EEEEecCCCEE
Confidence 445566677664 45555578999999999999854 1 24567888876
No 79
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=52.57 E-value=1.2e+02 Score=28.66 Aligned_cols=70 Identities=19% Similarity=0.320 Sum_probs=42.2
Q ss_pred ceeEeCCCCeE-EccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEE
Q psy18137 211 EPVSFQDKEAI-VRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKL 289 (320)
Q Consensus 211 ~~~~~~~g~~I-~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i 289 (320)
....+.+|..+ ..........++|++|++.+.... ....+.+||.+= +-.+.++...-...++++++++
T Consensus 388 ~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg-------~~~~L~~GDSi~---ip~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 388 KRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG-------DIKLLGENESIY---IPLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred EEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC-------EEEEecCCCEEE---ECCCCcEEEEcCCCCCEEEEEE
Confidence 44566777643 122233457778999999987431 357789999872 1123444444444566777766
Q ss_pred e
Q psy18137 290 D 290 (320)
Q Consensus 290 ~ 290 (320)
.
T Consensus 458 ~ 458 (478)
T PRK15460 458 R 458 (478)
T ss_pred E
Confidence 4
No 80
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=51.00 E-value=11 Score=30.93 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=40.3
Q ss_pred ceeEeeccCCCcc-cccccc---cccCCCHHHHHHHHHHHhcCc-cCCCC-CHHHHHHHHhcceeEEeC
Q psy18137 36 RGGISAEPVSEED-ATSYVK---KVVPKDYKTMAALSKAIAKNV-LFSHL-DENTRSDIFDAMFPVNCL 98 (320)
Q Consensus 36 ~~~is~e~~~~~~-~~~~~~---~~~~k~~~~~~~i~~~l~~~~-~f~~l-~~~~~~~l~~~~~~~~~~ 98 (320)
.++|||+...... ..-..| ++---++=++=.|++.||++. |+.++ +++.++++++.|+.+.-.
T Consensus 98 etTISAKvm~~ikavLgaTKiDLPVDINDPYDlGLLLRhLRHHSNLLAnIgdP~VreqVLsAMqEeeeE 166 (238)
T PF02084_consen 98 ETTISAKVMEDIKAVLGATKIDLPVDINDPYDLGLLLRHLRHHSNLLANIGDPEVREQVLSAMQEEEEE 166 (238)
T ss_pred CccccHHHHHHHHHHhcccccccccccCChhhHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhhHHH
Confidence 6888888765211 111122 233334555677888888876 78887 667778899999876544
No 81
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=50.95 E-value=31 Score=23.92 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=20.9
Q ss_pred CeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 111 DNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 111 ~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
...|+|++|.|++..++.... +.+|++|=
T Consensus 34 ~~vF~V~~G~v~Vti~~~~f~-v~~G~~F~ 62 (85)
T PF11699_consen 34 TMVFYVIKGKVEVTIHETSFV-VTKGGSFQ 62 (85)
T ss_dssp EEEEEEEESEEEEEETTEEEE-EETT-EEE
T ss_pred EEEEEEEeCEEEEEEcCcEEE-EeCCCEEE
Confidence 346889999999999885443 66777763
No 82
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=50.68 E-value=52 Score=27.27 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=45.6
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeee--ceEEEEEEc
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAK--TDVKLWGLD 166 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~--~~~~~~~i~ 166 (320)
......+.+|..+-.....+..+.+|++|.+. + ....+.+|++.= .......+.++. ++|.++.+-
T Consensus 128 ~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~---d--e~g~y~~Gd~i~-----~p~~~~H~p~a~~~~~Cicl~v~ 195 (215)
T TIGR02451 128 RVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS---D--ETGVYGVGDFEE-----ADGSVQHQPRTVSGGDCLCLAVL 195 (215)
T ss_pred EEEEEEECCCCccCCCcCCCcEEEEEEEEEEE---c--CCCccCCCeEEE-----CCCCCCcCcccCCCCCeEEEEEe
Confidence 45678899999999998889999999999974 1 224577777653 222223444455 458888764
No 83
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=49.64 E-value=63 Score=25.88 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=34.3
Q ss_pred CCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEe
Q psy18137 227 PGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLD 290 (320)
Q Consensus 227 ~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~ 290 (320)
.+..+++|++|++.+... + ....+.+||.+=- =.+.++.+.....+++.++++.
T Consensus 127 ~~~E~~~Vl~G~~~~~~~----~---~~~~l~~Gd~~~~---~~~~~H~~~n~~~~~~~~l~~~ 180 (185)
T PRK09943 127 QGEEIGTVLEGEIVLTIN----G---QDYHLVAGQSYAI---NTGIPHSFSNTSAGICRIISAH 180 (185)
T ss_pred CCcEEEEEEEeEEEEEEC----C---EEEEecCCCEEEE---cCCCCeeeeCCCCCCeEEEEEe
Confidence 346888999999998743 1 3567999998721 1234554444444567666653
No 84
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=49.63 E-value=64 Score=23.82 Aligned_cols=44 Identities=34% Similarity=0.486 Sum_probs=34.2
Q ss_pred eEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 94 PVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 94 ~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
.-...+|..=...++ +.+.=|++|.+.+..++.....+++||.|
T Consensus 49 iWe~TpG~~r~~y~~--~E~chil~G~v~~T~d~Ge~v~~~aGD~~ 92 (116)
T COG3450 49 IWECTPGKFRVTYDE--DEFCHILEGRVEVTPDGGEPVEVRAGDSF 92 (116)
T ss_pred EEEecCccceEEccc--ceEEEEEeeEEEEECCCCeEEEEcCCCEE
Confidence 345566666666665 67777899999999988888889999987
No 85
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=47.56 E-value=65 Score=26.95 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=48.3
Q ss_pred cceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeC-CCCeecH---HhHhcCCCceeEEEEecCeE
Q psy18137 210 LEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLG-PSDYFGE---IALLLDRPRAATVVAKGPLK 285 (320)
Q Consensus 210 ~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~-~G~~fGe---~~ll~~~~~~~tv~a~~~~~ 285 (320)
+....+.+|+..-..-...+.+.+++.|++.+..... ....++ .-++|-. .++.-...+.+++.|.++++
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~------~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~~ 104 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGS------TFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDLE 104 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccc------hHhhcccccccccCCCCCeEEecCCceEEEEeecceE
Confidence 4455678888887777777889999999999873211 112222 1222321 12222344778999999988
Q ss_pred EEEEehH
Q psy18137 286 CVKLDRA 292 (320)
Q Consensus 286 v~~i~~~ 292 (320)
|.....-
T Consensus 105 vAvC~AP 111 (270)
T COG3718 105 VAVCSAP 111 (270)
T ss_pred EEEEeCC
Confidence 8877654
No 86
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=46.16 E-value=68 Score=23.90 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=34.7
Q ss_pred ceeEeCCCCeEEccCCC-CCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeec
Q psy18137 211 EPVSFQDKEAIVRQGQP-GDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFG 264 (320)
Q Consensus 211 ~~~~~~~g~~I~~~g~~-~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 264 (320)
....+.+|..+-.--.+ .+...+|++|.+.+... + ....+.+||++-
T Consensus 46 ~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~----g---~~~~l~~Gd~i~ 93 (131)
T COG1917 46 VLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE----G---EKKELKAGDVII 93 (131)
T ss_pred EEEEECCCcccccccCCCcceEEEEEecEEEEEec----C---CceEecCCCEEE
Confidence 35677788777655555 66888999999999854 1 256788999984
No 87
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=46.14 E-value=1.3e+02 Score=22.85 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=37.5
Q ss_pred eEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCC---ccEEEE--EeCCCCeecHHhHhcCCCceeEEEEe
Q psy18137 213 VSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEE---SPVEVG--KLGPSDYFGEIALLLDRPRAATVVAK 281 (320)
Q Consensus 213 ~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~---~~~~~~--~l~~G~~fGe~~ll~~~~~~~tv~a~ 281 (320)
..+.+|....---..+..+++|.+|+..+......+. ...... .+.+||+|= -.......+.+.
T Consensus 39 ~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~-----vP~G~~h~~~n~ 107 (144)
T PF00190_consen 39 VLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFV-----VPAGHPHWIIND 107 (144)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEE-----E-TT-EEEEEEC
T ss_pred eehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeeccccee-----eccceeEEEEcC
Confidence 3445665543332377899999999999765543331 112223 599999983 344455666666
No 88
>PHA00672 hypothetical protein
Probab=43.37 E-value=1.4e+02 Score=22.34 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=33.2
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecC
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVG 134 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~ 134 (320)
+.....+++|..+.-.=-.-+++ +|.+|.+.|+.++.....-+
T Consensus 48 YARei~IPkGt~LtG~~hkf~~~-ii~sG~itV~tdge~~rl~g 90 (152)
T PHA00672 48 YARTIRIPAGVALTGALIKVSTV-LIFSGHATVFIGGEAVELRG 90 (152)
T ss_pred eEEEEeccCceeeeeeeeEeeEE-EEecccEEEEeCCcEEEEec
Confidence 55567889999987666666788 99999999999876554433
No 89
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=43.18 E-value=1.4e+02 Score=26.76 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=51.2
Q ss_pred EEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHh
Q psy18137 95 VNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRIL 174 (320)
Q Consensus 95 ~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~ 174 (320)
+.+++|..--..-..+..+|.|++|+-....+++. ..+++||+|---+. ...+..+.+++.++.++-.-+.+-+
T Consensus 255 q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~ig~~~-~~W~~gD~f~vPsW-----~~~~h~a~~da~Lf~~~D~Pll~~L 328 (335)
T TIGR02272 255 QLLPKGFRTATYRSTDATVFCVVEGRGQVRIGDAV-FRFSPKDVFVVPSW-----HPVRFEASDDAVLFSFSDRPVQQKL 328 (335)
T ss_pred hccCCCCCCCCccccccEEEEEEeCeEEEEECCEE-EEecCCCEEEECCC-----CcEecccCCCeEEEEecCHHHHHHh
Confidence 56677776666666778999999999999888865 46999999864432 1123334457778877665555433
No 90
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=42.91 E-value=89 Score=24.29 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=33.2
Q ss_pred ceeEEeCCCCeEEec-CCCCCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 92 MFPVNCLPGESIITQ-GDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~-G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
.+...+.||..+=-| ...-...++|++|.+.+..++ ....+.+|+.+
T Consensus 65 vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~-~~~~~~~g~sv 112 (151)
T PF01050_consen 65 VKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDD-EEFTLKEGDSV 112 (151)
T ss_pred EEEEEEcCCCccceeeecccccEEEEEeCeEEEEECC-EEEEEcCCCEE
Confidence 445566777777544 444567789999999999876 44557777764
No 91
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=42.08 E-value=59 Score=26.97 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=45.9
Q ss_pred cceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEec--CeEEE
Q psy18137 210 LEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKG--PLKCV 287 (320)
Q Consensus 210 ~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~--~~~v~ 287 (320)
.....+.+|..+-.-...+..+.+|++|.+. ++ -..+.+||+. ........+.++.+ +|.|+
T Consensus 129 v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~-----de------~g~y~~Gd~i-----~~p~~~~H~p~a~~~~~Cicl 192 (215)
T TIGR02451 129 VRLLYIEAGQSIPQHTHKGFELTLVLHGAFS-----DE------TGVYGVGDFE-----EADGSVQHQPRTVSGGDCLCL 192 (215)
T ss_pred EEEEEECCCCccCCCcCCCcEEEEEEEEEEE-----cC------CCccCCCeEE-----ECCCCCCcCcccCCCCCeEEE
Confidence 4567788998888888888888899999974 11 2457889887 22333445566664 48888
Q ss_pred EEehH
Q psy18137 288 KLDRA 292 (320)
Q Consensus 288 ~i~~~ 292 (320)
.+--.
T Consensus 193 ~v~da 197 (215)
T TIGR02451 193 AVLDA 197 (215)
T ss_pred EEecC
Confidence 76543
No 92
>COG5458 Uncharacterized conserved protein [Function unknown]
Probab=41.45 E-value=26 Score=25.70 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=29.0
Q ss_pred CCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcC
Q psy18137 110 GDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYG 147 (320)
Q Consensus 110 ~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~ 147 (320)
+.++|.|++|.|.....--.+..+..|+-+|...++.+
T Consensus 55 GgSLYwViKG~VqcRQ~ll~Ir~ftd~egigRC~l~L~ 92 (144)
T COG5458 55 GGSLYWVIKGQVQCRQKLLDIRTFTDGEGIGRCHLTLD 92 (144)
T ss_pred CCeEEEEEeceeehhhhceeeeeccCCCccceeEEeeC
Confidence 56899999999987665556778888888876655543
No 93
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=41.16 E-value=1.3e+02 Score=21.36 Aligned_cols=60 Identities=25% Similarity=0.284 Sum_probs=36.6
Q ss_pred EEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCE-EEEecCCCCeeehhhhhcCCCcceEEeeeceEE
Q psy18137 95 VNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE-LVTSVGEGGSFGELALIYGTPRAATVRAKTDVK 161 (320)
Q Consensus 95 ~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~-~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~ 161 (320)
=...||++=| |......--|++|.+.+..++. .-..+..|+.|-- .....+.+++.+.+.
T Consensus 28 GVm~pGeY~F--~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~V-----panssF~v~v~~~~~ 88 (94)
T PF06865_consen 28 GVMLPGEYTF--GTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEV-----PANSSFDVKVKEPTA 88 (94)
T ss_dssp EEE-SECEEE--EESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE------TTEEEEEEESS-EE
T ss_pred EEEeeeEEEE--cCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEE-----CCCCeEEEEECccee
Confidence 3456777444 3445667788999999999887 4677889998863 234456676666544
No 94
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=40.78 E-value=83 Score=26.95 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=38.2
Q ss_pred HhcceeEEeCCCCeEE-ecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 89 FDAMFPVNCLPGESII-TQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 89 ~~~~~~~~~~~g~~I~-~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
...+...++++|..+- +.-...++.++|++|+..+..++ ....+.+||++
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g-~~~~V~~GD~i 228 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDN-NWVPVEAGDYI 228 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECC-EEEEecCCCEE
Confidence 4467778999999994 34444678899999999887766 55568888875
No 95
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=38.72 E-value=1e+02 Score=27.92 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=32.9
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CEE-EEecCCCCee
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NEL-VTSVGEGGSF 139 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~~-~~~~~~G~~f 139 (320)
.+....+.+|.+.--.-....++.+|++|++.+... ++. ...+++||+|
T Consensus 68 s~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~ 120 (367)
T TIGR03404 68 AGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLW 120 (367)
T ss_pred cceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEE
Confidence 344456777775432222456799999999999873 333 3479999987
No 96
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=37.91 E-value=73 Score=26.66 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=23.1
Q ss_pred CCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 110 GDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 110 ~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
-+.+.+|++|++.+..++ ....+++||++
T Consensus 175 ~dEi~YVLEGe~~l~IdG-~t~~l~pGDvl 203 (233)
T PRK15457 175 YDEIDMVLEGELHVRHEG-ETMIAKAGDVM 203 (233)
T ss_pred ceEEEEEEEeEEEEEECC-EEEEeCCCcEE
Confidence 367788999999999876 55668888876
No 97
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=36.27 E-value=67 Score=25.03 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=22.2
Q ss_pred CCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 110 GDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 110 ~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
-|.+.+|++|++.+..+++ ...-++||.+
T Consensus 95 YDEi~~VlEG~L~i~~~G~-~~~A~~GDvi 123 (152)
T PF06249_consen 95 YDEIKYVLEGTLEISIDGQ-TVTAKPGDVI 123 (152)
T ss_dssp SEEEEEEEEEEEEEEETTE-EEEEETT-EE
T ss_pred cceEEEEEEeEEEEEECCE-EEEEcCCcEE
Confidence 5889999999999998875 4446778765
No 98
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=35.69 E-value=2.1e+02 Score=22.26 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=30.9
Q ss_pred ceeEeCCCCeEEcc-CCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 211 EPVSFQDKEAIVRQ-GQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 211 ~~~~~~~g~~I~~~-g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
+.....||..+-.+ ........+|++|...+.... ....+.+|+.+
T Consensus 66 kri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~-------~~~~~~~g~sv 112 (151)
T PF01050_consen 66 KRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDD-------EEFTLKEGDSV 112 (151)
T ss_pred EEEEEcCCCccceeeecccccEEEEEeCeEEEEECC-------EEEEEcCCCEE
Confidence 44566777776444 445567788999999998531 25667777775
No 99
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=34.68 E-value=1.3e+02 Score=27.32 Aligned_cols=49 Identities=20% Similarity=0.126 Sum_probs=34.3
Q ss_pred cceeEEeCCCCeEEec-CCCCCeEEEEEeeEEEEEEc----CEEEEecCCCCee
Q psy18137 91 AMFPVNCLPGESIITQ-GDEGDNFYVIDQGEVEVYVN----NELVTSVGEGGSF 139 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~-G~~~~~~yiI~~G~v~v~~~----~~~~~~~~~G~~f 139 (320)
.+....+.+|...-.. ....+.+++|++|++++... +.....+++||.+
T Consensus 246 s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~ 299 (367)
T TIGR03404 246 AAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVG 299 (367)
T ss_pred EEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEE
Confidence 3456677787755332 33367999999999999763 2356679999875
No 100
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=34.59 E-value=1.9e+02 Score=22.60 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=31.6
Q ss_pred CeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEe
Q psy18137 229 DDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLD 290 (320)
Q Consensus 229 ~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~ 290 (320)
+.+.+|++|.+.+... | ......+||++ +.....+.+..+.+.+.++++-
T Consensus 96 DEi~~VlEG~L~i~~~----G---~~~~A~~GDvi-----~iPkGs~I~fst~~~a~~~Yv~ 145 (152)
T PF06249_consen 96 DEIKYVLEGTLEISID----G---QTVTAKPGDVI-----FIPKGSTITFSTPDYARFFYVT 145 (152)
T ss_dssp EEEEEEEEEEEEEEET----T---EEEEEETT-EE-----EE-TT-EEEEEEEEEEEEEEEE
T ss_pred ceEEEEEEeEEEEEEC----C---EEEEEcCCcEE-----EECCCCEEEEecCCCEEEEEEE
Confidence 6788899999988622 2 25667899988 3344456666666667666553
No 101
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=33.75 E-value=55 Score=22.84 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=29.6
Q ss_pred HHHHhh-hhhHHHhhHHHHHhhhhhhcccCcHHHHhhhhc-ccc
Q psy18137 170 YRRILM-GSTIRKRKLYEEFLSRVSILESLEKWERLTVAD-SLE 211 (320)
Q Consensus 170 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~-~~~ 211 (320)
+-+++. +-|..-+.+...+...+|-|+.+++....+|.- +++
T Consensus 11 Lp~iLl~~GPLaIRhI~~~Lt~~vPgF~~ls~sKqRRLi~~ALE 54 (92)
T PF10330_consen 11 LPEILLNHGPLAIRHITGYLTTSVPGFSDLSPSKQRRLIMAALE 54 (92)
T ss_pred hHHHHHhcCcHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHHh
Confidence 344444 456666666777779999999999988888754 444
No 102
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=31.71 E-value=97 Score=22.46 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=30.4
Q ss_pred CCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEE--EEEEchhhHHHHhh
Q psy18137 110 GDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVK--LWGLDRDSYRRILM 175 (320)
Q Consensus 110 ~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~--~~~i~~~~~~~~~~ 175 (320)
.=.+.+|.+|+..+..+++ ...+++|+.|= +-.+.++.......++.. .+.++...+..+..
T Consensus 23 ~~~i~~v~~G~~~~~~~~~-~~~l~~g~~~l---i~p~~~H~~~~~~~~~~~~~~i~~~~~~~~~~~~ 86 (136)
T PF02311_consen 23 FYEIIYVLSGEGTLHIDGQ-EYPLKPGDLFL---IPPGQPHSYYPDSNEPWEYYWIYFSPDFLEELLE 86 (136)
T ss_dssp SEEEEEEEEE-EEEEETTE-EEEE-TT-EEE---E-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG
T ss_pred CEEEEEEeCCEEEEEECCE-EEEEECCEEEE---ecCCccEEEecCCCCCEEEEEEEECHHHHHHHHH
Confidence 4567899999999987774 46688888762 112333333333322443 44455555555443
No 103
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=29.26 E-value=1.3e+02 Score=25.03 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=34.6
Q ss_pred cCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEch
Q psy18137 106 QGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDR 167 (320)
Q Consensus 106 ~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~ 167 (320)
.++..+.+.||++|++.+...++ ...+.+|++.-- -.+......-.+.+++++..+.+
T Consensus 79 ~d~~ae~~lfVv~Ge~tv~~~G~-th~l~eggyayl---Ppgs~~~~~N~~~~~~rfhw~rk 136 (264)
T COG3257 79 GDEGAETFLFVVSGEITVKAEGK-THALREGGYAYL---PPGSGWTLRNAQKEDSRFHWIRK 136 (264)
T ss_pred CCCcceEEEEEEeeeEEEEEcCe-EEEeccCCeEEe---CCCCcceEeeccCCceEEEEEee
Confidence 34456889999999999998885 445777765311 11111222222566666666543
No 104
>PF12852 Cupin_6: Cupin
Probab=28.74 E-value=1.1e+02 Score=24.49 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=25.2
Q ss_pred CCCCeEEEEEeeEEEEEEcC-EEEEecCCCCee
Q psy18137 108 DEGDNFYVIDQGEVEVYVNN-ELVTSVGEGGSF 139 (320)
Q Consensus 108 ~~~~~~yiI~~G~v~v~~~~-~~~~~~~~G~~f 139 (320)
...-.||+|.+|.+.+..++ .....+.+||.+
T Consensus 33 ~~~~~fh~V~~G~~~l~~~~~~~~~~L~~GDiv 65 (186)
T PF12852_consen 33 SPGASFHVVLRGSCWLRVPGGGEPIRLEAGDIV 65 (186)
T ss_pred CCceEEEEEECCeEEEEEcCCCCeEEecCCCEE
Confidence 33578999999999999765 556668888875
No 105
>PRK10579 hypothetical protein; Provisional
Probab=27.26 E-value=2.3e+02 Score=20.06 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=39.5
Q ss_pred EEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCE-EEEecCCCCeeehhhhhcCCCcceEEeeeceE
Q psy18137 95 VNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE-LVTSVGEGGSFGELALIYGTPRAATVRAKTDV 160 (320)
Q Consensus 95 ~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~-~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~ 160 (320)
=...||++- -|......-=|++|.+.+..++. .-..+..|+.|.- .....+.+++.+.+
T Consensus 28 GVm~pGey~--F~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~V-----panssF~l~v~~~t 87 (94)
T PRK10579 28 GVMAEGEYT--FSTAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNV-----PGHSEFHLQVAEPT 87 (94)
T ss_pred EEEeeeEEE--EcCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEE-----CCCCeEEEEECcce
Confidence 345667743 34555677788999999988776 5678899998863 22345566655543
No 106
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=27.14 E-value=2.3e+02 Score=20.06 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=37.2
Q ss_pred EeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEE
Q psy18137 214 SFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVK 288 (320)
Q Consensus 214 ~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~ 288 (320)
...||++-| |.......-|.+|.+.+.... ... -..+..|+.|- -.....+.+++.+++.-++
T Consensus 29 Vm~pGeY~F--~T~~~E~M~vvsG~l~V~lpg--~~e---w~~~~aGesF~-----VpanssF~v~v~~~~~Y~C 91 (94)
T PF06865_consen 29 VMLPGEYTF--GTSAPERMEVVSGELEVKLPG--EDE---WQTYSAGESFE-----VPANSSFDVKVKEPTAYLC 91 (94)
T ss_dssp EE-SECEEE--EESS-EEEEEEESEEEEEETT---SS----EEEETT-EEE-----E-TTEEEEEEESS-EEEEE
T ss_pred EEeeeEEEE--cCCCCEEEEEEEeEEEEEcCC--Ccc---cEEeCCCCeEE-----ECCCCeEEEEECcceeeEE
Confidence 445666444 445567788999999987432 222 45678899984 2444677888887765443
No 107
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.65 E-value=1e+02 Score=27.76 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=36.8
Q ss_pred eEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhhhhcccCcHHHHhhhhccc
Q psy18137 159 DVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSL 210 (320)
Q Consensus 159 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~ 210 (320)
.+++-.|+.++|.+++..........+..++..-..--.+++.-+.++|+..
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA 381 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIA 381 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHH
Confidence 4677889999999999876665566677766655555556777777776644
No 108
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=26.03 E-value=3.4e+02 Score=22.80 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=21.0
Q ss_pred CeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 229 DDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 229 ~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
+.+.+|++|++.+... + ....+++||++
T Consensus 176 dEi~YVLEGe~~l~Id----G---~t~~l~pGDvl 203 (233)
T PRK15457 176 DEIDMVLEGELHVRHE----G---ETMIAKAGDVM 203 (233)
T ss_pred eEEEEEEEeEEEEEEC----C---EEEEeCCCcEE
Confidence 4677888999998853 2 35678899987
No 109
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=25.10 E-value=4.5e+02 Score=23.56 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=35.2
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEE-EEEcCEEEEecCCCCeeeh
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVE-VYVNNELVTSVGEGGSFGE 141 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~-v~~~~~~~~~~~~G~~fGe 141 (320)
+....+.+|+.--..-.....+++|++|.=. ..++++ ...+++||+|=-
T Consensus 83 a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V~g~-~~~~~~gD~~~t 132 (335)
T TIGR02272 83 AGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAVDGE-RTTMHPGDFIIT 132 (335)
T ss_pred hhhEEeCCCCCCCccccccceEEEEEEcCceEEEECCE-EEeeeCCCEEEe
Confidence 3456778888777666778899999999964 344554 555888888743
No 110
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=25.08 E-value=1.2e+02 Score=25.36 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=29.9
Q ss_pred HHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCC-CeEE
Q psy18137 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEG-DNFY 114 (320)
Q Consensus 69 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~-~~~y 114 (320)
.-.-.+|+|.+++..+..+.+.... .|++|+++-..+ +++-
T Consensus 33 ~R~I~HP~F~n~~~~qAe~~L~~~~-----~Ge~iIRPSSkG~dhL~ 74 (220)
T PF14633_consen 33 KRVIKHPLFKNFNYKQAEEYLADQD-----VGEVIIRPSSKGPDHLT 74 (220)
T ss_dssp HHHHCSTTEESS-HHHHHHHHCCS------TT-EEEEE-TTTTTEEE
T ss_pred cccccCCCccCCCHHHHHHHHhcCC-----CCCEEEeeCCCCCCeEE
Confidence 3455789999999999998888763 699999999887 5553
No 111
>PRK10579 hypothetical protein; Provisional
Probab=24.41 E-value=2.6e+02 Score=19.77 Aligned_cols=61 Identities=10% Similarity=0.120 Sum_probs=38.9
Q ss_pred eCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEE
Q psy18137 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCV 287 (320)
Q Consensus 215 ~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~ 287 (320)
..||++ .-|.......-|++|++.+... +.. .-..+..|+.|- -.....+.+++.+.+.-+
T Consensus 30 m~pGey--~F~T~~~E~MeivsG~l~V~Lp--g~~---ew~~~~aG~sF~-----VpanssF~l~v~~~t~Y~ 90 (94)
T PRK10579 30 MAEGEY--TFSTAEPEEMTVISGALNVLLP--GAT---DWQVYEAGEVFN-----VPGHSEFHLQVAEPTSYL 90 (94)
T ss_pred EeeeEE--EEcCCCcEEEEEEeeEEEEECC--CCc---ccEEeCCCCEEE-----ECCCCeEEEEECcceeeE
Confidence 345663 3455566788899999998743 222 246788999994 234466777777665433
No 112
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=24.40 E-value=1.8e+02 Score=17.87 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=12.9
Q ss_pred CCeEEEEEecEEEEE
Q psy18137 228 GDDFYIIVEGTALVL 242 (320)
Q Consensus 228 ~~~~yiI~~G~v~v~ 242 (320)
.+.+|+|.+|++...
T Consensus 9 ~ngiYiV~~G~v~~i 23 (50)
T PF13128_consen 9 ENGIYIVKDGEVTFI 23 (50)
T ss_pred CCeEEEEECCeEEEc
Confidence 478999999999876
No 113
>KOG4600|consensus
Probab=22.91 E-value=1.9e+02 Score=21.92 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=29.6
Q ss_pred hcccceeEeCCCCeEEcc-------CCC-----CCeEEEEEecEEEEEEec
Q psy18137 207 ADSLEPVSFQDKEAIVRQ-------GQP-----GDDFYIIVEGTALVLQNT 245 (320)
Q Consensus 207 ~~~~~~~~~~~g~~I~~~-------g~~-----~~~~yiI~~G~v~v~~~~ 245 (320)
...+.-+...+|++|++| |+. ...+|-+.+|.|+.++..
T Consensus 50 vKk~egq~V~~G~IIvrQRgtkfHPG~nVGiGKDhtifaL~eG~Vrf~k~~ 100 (144)
T KOG4600|consen 50 VKKYEGQSVIPGNIIVRQRGTKFHPGDNVGIGKDHTIFALEEGRVRFEKSK 100 (144)
T ss_pred ceecCCeeeecccEEEEecccccCCCcccccCCcceEEEeeccEEEEEEcc
Confidence 345666788899999877 332 258999999999998653
No 114
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=22.68 E-value=3.7e+02 Score=20.88 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=30.8
Q ss_pred CCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehHH
Q psy18137 227 PGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRAR 293 (320)
Q Consensus 227 ~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~ 293 (320)
..+.+|.-++|...+..... ++ .....+..|++| ++-.. -+.+-+=..++.-++|.+..
T Consensus 52 e~eE~FyQ~kG~m~Lkv~e~--g~-~kdi~I~EGe~f----LLP~~-vpHsP~R~~~tiGLViEr~R 110 (151)
T PF06052_consen 52 ETEEFFYQLKGDMCLKVVED--GK-FKDIPIREGEMF----LLPAN-VPHSPQRPADTIGLVIERKR 110 (151)
T ss_dssp SS-EEEEEEES-EEEEEEET--TE-EEEEEE-TTEEE----EE-TT---EEEEE-TT-EEEEEEE--
T ss_pred CcceEEEEEeCcEEEEEEeC--Cc-eEEEEeCCCcEE----ecCCC-CCCCCcCCCCcEEEEEEecc
Confidence 33477788899888764432 33 346678999999 33222 22233334678888887753
No 115
>cd06929 NR_LBD_F1 Ligand-binding domain of nuclear receptor family 1. Ligand-binding domain (LBD) of nuclear receptor (NR) family 1: This is one of the major subfamily of nuclear receptors, including thyroid receptor, retinoid acid receptor, ecdysone receptor, farnesoid X receptor, vitamin D receptor, and other related receptors. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=21.70 E-value=1.2e+02 Score=23.78 Aligned_cols=31 Identities=6% Similarity=0.110 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCccCCCCCHHHHHHHHhc
Q psy18137 61 YKTMAALSKAIAKNVLFSHLDENTRSDIFDA 91 (320)
Q Consensus 61 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~ 91 (320)
...+..+.++.+++|.|..|+.++...+++.
T Consensus 12 ~~~l~~~v~~ak~ip~F~~L~~~Dq~~Llk~ 42 (174)
T cd06929 12 TVAIRRVVEFAKRIPGFRELSQEDQIALLKG 42 (174)
T ss_pred HHHHHHHHhhccCCcCcccCChhHHHHHHHh
Confidence 4567888999999999999999887766663
No 116
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=20.77 E-value=2.7e+02 Score=23.95 Aligned_cols=77 Identities=13% Similarity=0.046 Sum_probs=45.9
Q ss_pred cceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecH--HhHhcCCCceeEEEEecCeEEE
Q psy18137 210 LEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGE--IALLLDRPRAATVVAKGPLKCV 287 (320)
Q Consensus 210 ~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe--~~ll~~~~~~~tv~a~~~~~v~ 287 (320)
+....+.+|+.+-..-+.-+...++++|.+.+... +. .....-..-++|.. .++.-+....+++.|.++++++
T Consensus 29 ~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~----g~-~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~ 103 (261)
T PF04962_consen 29 FGVLRLEAGESLEFELERRELGVVNLGGKATVTVD----GE-EFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFA 103 (261)
T ss_dssp CCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEET----TE-EEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEE
T ss_pred eEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEeC----Cc-eEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEE
Confidence 34566667766655555556788889999999742 11 11222344567743 2233355567888898889988
Q ss_pred EEeh
Q psy18137 288 KLDR 291 (320)
Q Consensus 288 ~i~~ 291 (320)
....
T Consensus 104 ~~sa 107 (261)
T PF04962_consen 104 VCSA 107 (261)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 7654
Done!