Query psy18137
Match_columns 320
No_of_seqs 288 out of 2843
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 23:34:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4din_B CAMP-dependent protein 100.0 1.5E-54 5E-59 391.3 26.5 307 14-320 74-381 (381)
2 2qcs_B CAMP-dependent protein 100.0 1.3E-49 4.6E-54 346.8 31.4 290 31-320 1-290 (291)
3 3tnp_B CAMP-dependent protein 100.0 4.5E-50 1.5E-54 365.5 27.1 293 25-317 99-402 (416)
4 3shr_A CGMP-dependent protein 100.0 5.5E-45 1.9E-49 318.9 27.9 265 52-316 22-286 (299)
5 3of1_A CAMP-dependent protein 100.0 8.1E-44 2.8E-48 302.5 25.0 243 64-311 2-244 (246)
6 1o7f_A CAMP-dependent RAP1 gua 100.0 5.2E-38 1.8E-42 291.3 25.8 273 27-310 5-457 (469)
7 4f7z_A RAP guanine nucleotide 100.0 3.1E-37 1.1E-41 309.4 29.2 248 50-303 23-450 (999)
8 3pna_A CAMP-dependent protein 100.0 2.8E-27 9.6E-32 186.2 15.9 153 32-184 1-153 (154)
9 3idb_B CAMP-dependent protein 99.9 2.7E-25 9.3E-30 176.1 14.7 152 35-186 2-159 (161)
10 3ocp_A PRKG1 protein; serine/t 99.9 8.3E-23 2.8E-27 157.6 16.1 133 52-184 6-138 (139)
11 3gyd_A CNMP-BD protein, cyclic 99.8 2.5E-20 8.5E-25 151.2 15.4 136 54-189 24-164 (187)
12 1vp6_A CNBD, cyclic-nucleotide 99.8 2.2E-20 7.5E-25 143.6 13.7 130 61-192 3-132 (138)
13 4f8a_A Potassium voltage-gated 99.8 3.6E-20 1.2E-24 146.0 14.9 125 64-188 22-148 (160)
14 3idb_B CAMP-dependent protein 99.8 4.5E-21 1.5E-25 151.7 8.2 139 167-307 18-156 (161)
15 3mdp_A Cyclic nucleotide-bindi 99.8 2.2E-20 7.6E-25 144.2 11.9 124 69-192 6-137 (142)
16 2ptm_A Hyperpolarization-activ 99.8 7.1E-20 2.4E-24 149.8 14.1 128 64-191 66-194 (198)
17 2z69_A DNR protein; beta barre 99.8 1.6E-19 5.4E-24 141.4 15.4 132 64-195 7-144 (154)
18 3mdp_A Cyclic nucleotide-bindi 99.8 6.8E-20 2.3E-24 141.4 12.1 128 187-315 6-136 (142)
19 2pqq_A Putative transcriptiona 99.8 9.7E-20 3.3E-24 141.7 12.5 126 68-193 4-134 (149)
20 3ukn_A Novel protein similar t 99.8 1.2E-19 4.2E-24 150.0 13.6 124 69-192 75-200 (212)
21 2d93_A RAP guanine nucleotide 99.8 3E-20 1E-24 142.3 8.9 124 56-179 3-128 (134)
22 3bpz_A Potassium/sodium hyperp 99.8 7.7E-20 2.6E-24 150.1 12.0 129 65-193 68-196 (202)
23 2z69_A DNR protein; beta barre 99.8 6E-19 2.1E-23 138.0 13.9 131 184-315 9-140 (154)
24 3gyd_A CNMP-BD protein, cyclic 99.8 8.3E-19 2.8E-23 142.2 14.6 126 183-309 35-160 (187)
25 2pqq_A Putative transcriptiona 99.8 3E-19 1E-23 138.9 11.3 127 186-313 4-130 (149)
26 2ptm_A Hyperpolarization-activ 99.8 1E-18 3.5E-23 142.9 14.6 129 183-316 67-195 (198)
27 3ocp_A PRKG1 protein; serine/t 99.8 1.4E-18 4.9E-23 133.7 14.1 120 182-307 18-137 (139)
28 3of1_A CAMP-dependent protein 99.8 1.8E-18 6.2E-23 146.0 13.7 134 49-182 105-239 (246)
29 3e97_A Transcriptional regulat 99.8 1.5E-18 5.1E-23 145.3 13.0 125 68-192 5-134 (231)
30 4f8a_A Potassium voltage-gated 99.8 3.3E-18 1.1E-22 134.7 14.1 127 182-314 22-150 (160)
31 4ev0_A Transcription regulator 99.8 2.7E-18 9.3E-23 142.1 14.2 122 71-192 1-127 (216)
32 3pna_A CAMP-dependent protein 99.8 1.3E-18 4.3E-23 136.5 11.4 122 179-306 30-151 (154)
33 4ava_A Lysine acetyltransferas 99.8 2.3E-18 7.8E-23 152.3 14.4 124 69-193 13-140 (333)
34 3d0s_A Transcriptional regulat 99.8 3.1E-18 1.1E-22 142.9 14.1 127 186-313 5-131 (227)
35 3d0s_A Transcriptional regulat 99.8 1.5E-18 5E-23 144.9 11.9 126 67-192 4-134 (227)
36 1vp6_A CNBD, cyclic-nucleotide 99.8 3.2E-18 1.1E-22 131.4 12.3 124 185-316 9-132 (138)
37 3fx3_A Cyclic nucleotide-bindi 99.8 3.2E-18 1.1E-22 143.8 13.4 127 66-192 8-139 (237)
38 3shr_A CGMP-dependent protein 99.8 6.3E-19 2.1E-23 153.5 9.3 135 61-195 149-289 (299)
39 3dn7_A Cyclic nucleotide bindi 99.8 3E-18 1E-22 139.5 12.7 127 185-312 5-132 (194)
40 4ev0_A Transcription regulator 99.8 4.8E-18 1.6E-22 140.6 14.1 124 189-313 1-124 (216)
41 1zyb_A Transcription regulator 99.8 5.6E-18 1.9E-22 142.0 14.4 128 65-192 14-149 (232)
42 3dn7_A Cyclic nucleotide bindi 99.8 5.7E-18 2E-22 137.8 13.6 125 68-192 6-136 (194)
43 3fx3_A Cyclic nucleotide-bindi 99.8 7.1E-18 2.4E-22 141.7 14.3 129 184-313 8-136 (237)
44 1o7f_A CAMP-dependent RAP1 gua 99.8 7.6E-18 2.6E-22 155.8 15.3 133 52-184 320-455 (469)
45 3iwz_A CAP-like, catabolite ac 99.8 1.2E-17 3.9E-22 139.7 14.3 128 65-192 7-145 (230)
46 1zyb_A Transcription regulator 99.8 1.2E-17 4.2E-22 139.9 14.3 129 184-313 15-146 (232)
47 3bpz_A Potassium/sodium hyperp 99.8 6.6E-18 2.2E-22 138.5 12.4 126 183-314 68-193 (202)
48 3dv8_A Transcriptional regulat 99.8 1.1E-17 3.6E-22 138.9 13.7 124 69-192 3-133 (220)
49 3dkw_A DNR protein; CRP-FNR, H 99.8 2.7E-18 9.2E-23 143.2 9.9 126 67-192 7-138 (227)
50 3e97_A Transcriptional regulat 99.7 5.5E-18 1.9E-22 141.9 11.5 128 186-314 5-132 (231)
51 4din_B CAMP-dependent protein 99.7 3.9E-18 1.3E-22 153.4 10.8 131 62-192 241-377 (381)
52 1wgp_A Probable cyclic nucleot 99.7 1.1E-18 3.7E-23 133.9 6.2 114 69-182 6-134 (137)
53 2qcs_B CAMP-dependent protein 99.7 2.1E-17 7.2E-22 143.1 15.0 125 64-188 152-282 (291)
54 3dv8_A Transcriptional regulat 99.7 1.8E-17 6.2E-22 137.5 13.7 126 187-313 3-130 (220)
55 3ukn_A Novel protein similar t 99.7 1.5E-17 5.1E-22 137.4 11.3 121 190-316 78-200 (212)
56 3iwz_A CAP-like, catabolite ac 99.7 4.3E-17 1.5E-21 136.2 14.2 128 185-313 9-142 (230)
57 4f7z_A RAP guanine nucleotide 99.7 2.2E-17 7.5E-22 165.8 14.6 126 51-176 319-447 (999)
58 3dkw_A DNR protein; CRP-FNR, H 99.7 6.5E-18 2.2E-22 140.9 8.4 128 185-313 7-135 (227)
59 4ava_A Lysine acetyltransferas 99.7 3.1E-17 1.1E-21 144.9 13.2 126 186-314 12-137 (333)
60 2gau_A Transcriptional regulat 99.7 2.8E-17 9.6E-22 137.6 12.3 120 73-192 14-138 (232)
61 2gau_A Transcriptional regulat 99.7 3.2E-17 1.1E-21 137.3 12.6 123 191-314 14-136 (232)
62 3tnp_B CAMP-dependent protein 99.7 2.8E-17 9.7E-22 149.3 12.8 125 180-306 138-262 (416)
63 1wgp_A Probable cyclic nucleot 99.7 3.8E-18 1.3E-22 130.9 5.2 117 187-305 6-133 (137)
64 2d93_A RAP guanine nucleotide 99.7 4.6E-17 1.6E-21 124.4 8.1 114 184-303 13-128 (134)
65 3ryp_A Catabolite gene activat 99.7 1.5E-16 5.3E-21 130.9 11.8 118 194-312 3-121 (210)
66 3cf6_E RAP guanine nucleotide 99.7 1.6E-16 5.5E-21 152.4 13.5 131 50-180 13-146 (694)
67 3ryp_A Catabolite gene activat 99.7 2.8E-16 9.4E-21 129.4 12.9 118 75-192 2-125 (210)
68 2oz6_A Virulence factor regula 99.7 2.4E-16 8.2E-21 129.5 12.5 114 198-312 1-118 (207)
69 2oz6_A Virulence factor regula 99.7 5.6E-16 1.9E-20 127.2 13.5 113 80-192 1-122 (207)
70 1o5l_A Transcriptional regulat 99.7 3.7E-16 1.3E-20 129.1 12.0 119 193-312 5-124 (213)
71 3kcc_A Catabolite gene activat 99.7 3.6E-16 1.2E-20 133.3 11.6 116 196-312 55-171 (260)
72 2fmy_A COOA, carbon monoxide o 99.7 3.7E-16 1.3E-20 129.7 10.4 117 187-312 4-120 (220)
73 2fmy_A COOA, carbon monoxide o 99.7 1.9E-16 6.5E-21 131.4 8.2 117 69-192 4-124 (220)
74 3kcc_A Catabolite gene activat 99.7 1E-15 3.4E-20 130.5 12.7 117 76-192 53-175 (260)
75 1o5l_A Transcriptional regulat 99.6 5.8E-16 2E-20 127.9 10.4 121 73-193 3-129 (213)
76 1ft9_A Carbon monoxide oxidati 99.6 3E-16 1E-20 130.4 7.2 116 70-192 1-120 (222)
77 1ft9_A Carbon monoxide oxidati 99.6 5.4E-16 1.8E-20 128.9 8.2 115 188-311 1-115 (222)
78 3e6c_C CPRK, cyclic nucleotide 99.6 2.2E-15 7.5E-20 127.6 11.5 118 192-313 14-131 (250)
79 3e6c_C CPRK, cyclic nucleotide 99.6 3.1E-15 1.1E-19 126.6 10.6 119 71-192 11-134 (250)
80 3la7_A Global nitrogen regulat 99.6 1.8E-14 6.1E-19 121.4 14.9 113 200-313 30-147 (243)
81 3beh_A MLL3241 protein; transm 99.6 2.2E-16 7.5E-21 140.7 0.6 122 68-191 227-348 (355)
82 3cf6_E RAP guanine nucleotide 99.6 2E-14 6.7E-19 138.0 13.2 137 164-305 5-147 (694)
83 3la7_A Global nitrogen regulat 99.5 6.3E-14 2.1E-18 118.1 13.2 111 82-192 30-150 (243)
84 2bgc_A PRFA; bacterial infecti 99.5 5.8E-14 2E-18 117.9 12.6 114 78-192 2-125 (238)
85 2bgc_A PRFA; bacterial infecti 99.5 3.7E-14 1.3E-18 119.1 11.3 115 197-313 3-122 (238)
86 3b02_A Transcriptional regulat 99.5 1.2E-13 4E-18 112.4 11.3 81 213-295 2-82 (195)
87 3beh_A MLL3241 protein; transm 99.5 3.9E-15 1.3E-19 132.6 1.7 123 186-316 227-349 (355)
88 3b02_A Transcriptional regulat 99.4 7.7E-13 2.6E-17 107.5 10.3 76 95-171 2-82 (195)
89 2zcw_A TTHA1359, transcription 99.4 6.2E-13 2.1E-17 108.6 9.3 87 206-295 1-89 (202)
90 2zcw_A TTHA1359, transcription 99.3 5.8E-12 2E-16 102.8 8.3 82 88-171 1-89 (202)
91 3rns_A Cupin 2 conserved barre 97.7 0.00077 2.6E-08 55.5 13.4 174 91-289 38-223 (227)
92 1sfn_A Conserved hypothetical 95.1 0.09 3.1E-06 43.5 8.4 177 92-289 52-237 (246)
93 4e2q_A Ureidoglycine aminohydr 93.9 0.075 2.6E-06 44.3 5.3 155 92-263 72-235 (266)
94 3h7j_A Bacilysin biosynthesis 93.6 2.5 8.6E-05 34.5 15.3 176 91-289 35-217 (243)
95 2ozj_A Cupin 2, conserved barr 93.5 0.63 2.1E-05 32.9 9.1 68 92-165 40-107 (114)
96 3fjs_A Uncharacterized protein 93.0 1 3.5E-05 32.0 9.6 67 91-163 37-103 (114)
97 2qnk_A 3-hydroxyanthranilate 3 92.6 1.7 5.8E-05 36.1 11.3 68 212-292 211-278 (286)
98 3bu7_A Gentisate 1,2-dioxygena 92.1 5.9 0.0002 34.9 14.9 47 93-140 126-173 (394)
99 1yhf_A Hypothetical protein SP 90.6 2.4 8.3E-05 29.7 9.3 68 92-165 42-109 (115)
100 2pfw_A Cupin 2, conserved barr 90.1 2.9 9.8E-05 29.3 9.3 69 91-165 35-103 (116)
101 1sq4_A GLXB, glyoxylate-induce 89.9 0.28 9.7E-06 41.3 4.2 159 92-263 70-240 (278)
102 3es1_A Cupin 2, conserved barr 89.3 0.56 1.9E-05 36.3 5.1 71 91-165 80-150 (172)
103 2fqp_A Hypothetical protein BP 89.1 0.99 3.4E-05 30.9 5.9 49 92-140 20-70 (97)
104 4e2g_A Cupin 2 conserved barre 89.0 3.3 0.00011 29.5 9.1 48 91-139 42-89 (126)
105 3lwc_A Uncharacterized protein 88.8 5 0.00017 28.7 9.8 47 92-140 42-88 (119)
106 3fjs_A Uncharacterized protein 88.6 4.5 0.00016 28.5 9.4 66 211-288 39-104 (114)
107 2pyt_A Ethanolamine utilizatio 88.2 2.5 8.7E-05 31.0 7.9 46 92-140 59-104 (133)
108 3rns_A Cupin 2 conserved barre 87.6 3.3 0.00011 33.4 9.1 68 91-164 154-222 (227)
109 2ozj_A Cupin 2, conserved barr 87.6 3.2 0.00011 29.1 8.1 62 215-289 45-107 (114)
110 3d0j_A Uncharacterized protein 86.5 4 0.00014 30.1 7.9 67 221-292 43-110 (140)
111 1o5u_A Novel thermotoga mariti 85.6 6.7 0.00023 27.1 8.6 47 92-140 33-79 (101)
112 2i45_A Hypothetical protein; n 85.3 1.2 4E-05 31.0 4.6 69 96-169 34-102 (107)
113 3h8u_A Uncharacterized conserv 84.6 2.8 9.6E-05 29.9 6.6 72 91-165 40-112 (125)
114 2bnm_A Epoxidase; oxidoreducta 83.7 4.6 0.00016 31.5 7.9 69 92-165 119-196 (198)
115 1yhf_A Hypothetical protein SP 83.4 9.1 0.00031 26.5 9.3 66 212-289 44-109 (115)
116 3l2h_A Putative sugar phosphat 83.1 3.3 0.00011 31.2 6.7 48 91-139 47-96 (162)
117 1v70_A Probable antibiotics sy 82.6 8.3 0.00029 25.9 8.2 47 92-139 30-77 (105)
118 2qjv_A Uncharacterized IOLB-li 82.5 7.1 0.00024 32.4 8.7 78 91-168 30-111 (270)
119 2f4p_A Hypothetical protein TM 82.1 4.3 0.00015 30.1 6.8 71 92-165 50-120 (147)
120 2pfw_A Cupin 2, conserved barr 81.4 11 0.00038 26.1 9.0 66 212-289 38-103 (116)
121 3bcw_A Uncharacterized protein 81.4 0.89 3.1E-05 33.0 2.6 46 94-140 53-98 (123)
122 3ibm_A Cupin 2, conserved barr 81.2 10 0.00036 28.7 8.9 48 92-140 58-105 (167)
123 3i7d_A Sugar phosphate isomera 80.8 5.4 0.00019 30.2 7.1 49 91-140 44-94 (163)
124 2gu9_A Tetracenomycin polyketi 79.9 5.1 0.00018 27.6 6.3 48 92-140 23-73 (113)
125 3lwc_A Uncharacterized protein 79.7 14 0.00048 26.2 9.3 44 212-263 44-87 (119)
126 3kgz_A Cupin 2 conserved barre 79.0 4.7 0.00016 30.4 6.1 46 93-139 47-92 (156)
127 2q30_A Uncharacterized protein 78.3 8.6 0.0003 26.3 7.1 68 92-164 35-104 (110)
128 4axo_A EUTQ, ethanolamine util 77.7 7.8 0.00027 29.1 6.9 31 109-140 83-113 (151)
129 1zvf_A 3-hydroxyanthranilate 3 77.7 11 0.00038 28.9 7.6 67 220-292 47-114 (176)
130 4b29_A Dimethylsulfoniopropion 77.4 3.7 0.00013 32.8 5.2 83 58-140 80-182 (217)
131 3d0j_A Uncharacterized protein 77.3 9.8 0.00034 28.0 7.0 60 104-168 44-110 (140)
132 4e2g_A Cupin 2 conserved barre 76.1 18 0.00061 25.5 8.6 66 212-289 45-111 (126)
133 3d82_A Cupin 2, conserved barr 76.0 5.6 0.00019 26.9 5.4 57 105-167 45-101 (102)
134 2b8m_A Hypothetical protein MJ 75.7 2.7 9.3E-05 29.6 3.8 46 94-139 31-76 (117)
135 3es4_A Uncharacterized protein 75.7 2.5 8.4E-05 30.3 3.4 46 94-140 46-91 (116)
136 1sfn_A Conserved hypothetical 74.7 14 0.00048 30.0 8.3 49 91-140 166-215 (246)
137 1dgw_A Canavalin; duplicated s 74.5 3.8 0.00013 31.6 4.6 50 91-140 42-94 (178)
138 2vpv_A Protein MIF2, MIF2P; nu 74.4 2.9 0.0001 32.0 3.8 31 109-140 109-139 (166)
139 1yfu_A 3-hydroxyanthranilate-3 74.0 16 0.00055 28.0 7.7 64 220-292 48-112 (174)
140 3jzv_A Uncharacterized protein 73.4 4.6 0.00016 30.8 4.7 48 92-140 55-102 (166)
141 2opk_A Hypothetical protein; p 73.1 2.6 8.9E-05 29.7 3.0 33 108-140 51-84 (112)
142 1y9q_A Transcriptional regulat 72.8 9.4 0.00032 29.5 6.6 46 94-140 108-155 (192)
143 4axo_A EUTQ, ethanolamine util 71.2 14 0.00049 27.6 6.9 52 227-290 83-134 (151)
144 3h7j_A Bacilysin biosynthesis 71.2 16 0.00055 29.6 7.9 46 94-140 149-195 (243)
145 3cew_A Uncharacterized cupin p 70.7 7.1 0.00024 27.7 5.0 48 92-140 28-77 (125)
146 2qnk_A 3-hydroxyanthranilate 3 70.6 16 0.00054 30.3 7.4 64 220-292 44-107 (286)
147 2pyt_A Ethanolamine utilizatio 69.9 16 0.00056 26.5 6.9 63 213-289 62-124 (133)
148 1vj2_A Novel manganese-contain 69.3 9.8 0.00034 27.1 5.6 46 93-139 51-96 (126)
149 1o5u_A Novel thermotoga mariti 69.2 24 0.00084 24.1 8.3 62 212-286 35-96 (101)
150 1o4t_A Putative oxalate decarb 69.0 10 0.00036 27.3 5.7 47 92-139 59-106 (133)
151 3d82_A Cupin 2, conserved barr 68.6 9 0.00031 25.8 5.0 54 226-291 48-101 (102)
152 1zvf_A 3-hydroxyanthranilate 3 65.7 8.6 0.00029 29.5 4.6 61 102-168 47-114 (176)
153 1lr5_A Auxin binding protein 1 65.2 8.2 0.00028 29.0 4.6 47 92-139 43-98 (163)
154 2vpv_A Protein MIF2, MIF2P; nu 65.0 24 0.00081 26.9 7.0 52 226-289 108-161 (166)
155 2bnm_A Epoxidase; oxidoreducta 64.9 32 0.0011 26.5 8.2 55 227-289 139-196 (198)
156 1yfu_A 3-hydroxyanthranilate-3 64.5 19 0.00064 27.6 6.3 38 102-140 48-88 (174)
157 2o1q_A Putative acetyl/propion 64.5 5.7 0.00019 29.5 3.5 70 91-165 45-116 (145)
158 1juh_A Quercetin 2,3-dioxygena 64.3 16 0.00053 31.6 6.7 70 100-174 262-334 (350)
159 3es1_A Cupin 2, conserved barr 63.7 17 0.00059 27.8 6.1 70 210-289 81-150 (172)
160 2q1z_B Anti-sigma factor CHRR, 63.7 9.9 0.00034 29.8 4.9 67 91-165 126-192 (195)
161 3ibm_A Cupin 2, conserved barr 63.1 39 0.0013 25.4 8.2 69 212-290 60-129 (167)
162 2gu9_A Tetracenomycin polyketi 62.8 30 0.001 23.4 7.0 45 212-263 25-72 (113)
163 1rc6_A Hypothetical protein YL 61.7 15 0.00053 30.0 6.0 153 93-263 62-228 (261)
164 3bu7_A Gentisate 1,2-dioxygena 60.9 33 0.0011 30.2 8.1 79 92-174 296-375 (394)
165 2oa2_A BH2720 protein; 1017534 60.4 11 0.00036 27.9 4.4 48 92-139 45-98 (148)
166 2i45_A Hypothetical protein; n 60.0 16 0.00056 24.9 5.1 66 217-294 37-103 (107)
167 1sq4_A GLXB, glyoxylate-induce 60.0 15 0.00051 30.6 5.6 48 91-139 192-240 (278)
168 1sef_A Conserved hypothetical 59.1 16 0.00056 30.2 5.7 48 92-140 184-232 (274)
169 2vqa_A SLL1358 protein, MNCA; 58.5 20 0.00068 30.9 6.4 50 91-140 235-289 (361)
170 1dgw_A Canavalin; duplicated s 58.0 18 0.00062 27.7 5.4 51 210-263 43-93 (178)
171 3nw4_A Gentisate 1,2-dioxygena 57.6 53 0.0018 28.5 8.8 77 92-174 281-357 (368)
172 3nw4_A Gentisate 1,2-dioxygena 57.4 58 0.002 28.3 9.0 62 226-299 297-358 (368)
173 1y3t_A Hypothetical protein YX 57.3 22 0.00076 30.1 6.5 48 92-140 48-96 (337)
174 2d40_A Z3393, putative gentisa 55.6 70 0.0024 27.5 9.3 74 93-172 271-344 (354)
175 2xp1_A SPT6; transcription, IW 55.4 17 0.00058 28.0 4.8 38 73-116 13-50 (178)
176 3ht1_A REMF protein; cupin fol 55.0 19 0.00066 25.9 5.0 44 95-140 44-90 (145)
177 2o8q_A Hypothetical protein; c 54.7 12 0.00043 26.8 3.8 34 106-139 60-93 (134)
178 1uij_A Beta subunit of beta co 54.0 15 0.00052 32.6 4.9 49 91-139 50-101 (416)
179 3l2h_A Putative sugar phosphat 53.8 51 0.0017 24.4 7.3 45 212-263 50-96 (162)
180 3bcw_A Uncharacterized protein 53.8 42 0.0014 23.9 6.4 50 229-289 69-119 (123)
181 3h8u_A Uncharacterized conserv 53.6 31 0.001 24.2 5.8 69 212-289 43-112 (125)
182 3es4_A Uncharacterized protein 52.8 50 0.0017 23.3 6.5 59 214-284 48-106 (116)
183 2d40_A Z3393, putative gentisa 52.7 14 0.00048 32.0 4.3 48 92-140 102-150 (354)
184 3i7d_A Sugar phosphate isomera 52.4 31 0.0011 25.8 5.9 45 212-263 47-93 (163)
185 1j58_A YVRK protein; cupin, de 51.5 53 0.0018 28.5 8.0 50 91-140 258-312 (385)
186 2qjv_A Uncharacterized IOLB-li 51.1 63 0.0021 26.7 7.8 77 209-291 30-110 (270)
187 4i4a_A Similar to unknown prot 49.9 63 0.0021 22.5 9.4 81 92-176 36-118 (128)
188 1rc6_A Hypothetical protein YL 49.9 16 0.00053 30.0 4.1 48 92-140 181-229 (261)
189 1sef_A Conserved hypothetical 49.8 22 0.00074 29.4 5.0 175 93-289 65-255 (274)
190 2q1z_B Anti-sigma factor CHRR, 49.8 16 0.00055 28.6 3.9 64 210-289 127-192 (195)
191 1fi2_A Oxalate oxidase, germin 49.5 38 0.0013 26.4 6.2 50 91-140 73-130 (201)
192 2vqa_A SLL1358 protein, MNCA; 48.6 30 0.001 29.8 5.9 50 91-140 53-107 (361)
193 2cav_A Protein (canavalin); vi 48.3 19 0.00066 32.2 4.7 49 91-139 87-138 (445)
194 3cew_A Uncharacterized cupin p 48.1 67 0.0023 22.4 7.5 45 212-263 30-76 (125)
195 4e2q_A Ureidoglycine aminohydr 48.1 34 0.0012 28.2 5.8 51 89-140 185-236 (266)
196 3myx_A Uncharacterized protein 47.8 15 0.00053 29.8 3.6 31 110-140 186-216 (238)
197 1x82_A Glucose-6-phosphate iso 47.7 22 0.00074 27.6 4.4 48 92-139 69-129 (190)
198 1j58_A YVRK protein; cupin, de 47.5 31 0.0011 30.0 5.9 49 91-139 80-132 (385)
199 3kgz_A Cupin 2 conserved barre 47.5 29 0.00098 25.9 4.9 29 228-263 64-92 (156)
200 2d5f_A Glycinin A3B4 subunit; 47.1 1.3E+02 0.0046 27.2 10.0 52 211-263 370-422 (493)
201 2q30_A Uncharacterized protein 46.4 63 0.0022 21.6 7.9 66 213-289 38-105 (110)
202 1v70_A Probable antibiotics sy 46.3 60 0.0021 21.3 9.0 66 212-289 32-100 (105)
203 3jzv_A Uncharacterized protein 45.5 30 0.001 26.2 4.7 29 228-263 73-101 (166)
204 3ebr_A Uncharacterized RMLC-li 44.7 28 0.00097 26.2 4.5 66 91-164 43-112 (159)
205 1y9q_A Transcriptional regulat 43.2 1.1E+02 0.0036 23.3 8.3 44 213-263 109-154 (192)
206 2phl_A Phaseolin; plant SEED s 41.5 1E+02 0.0034 27.1 8.1 48 91-138 53-103 (397)
207 2f4p_A Hypothetical protein TM 41.4 58 0.002 23.8 5.8 70 212-290 52-121 (147)
208 3myx_A Uncharacterized protein 41.3 23 0.00079 28.7 3.7 40 99-140 55-94 (238)
209 2ea7_A 7S globulin-1; beta bar 40.3 33 0.0011 30.6 4.8 49 91-139 62-113 (434)
210 3lag_A Uncharacterized protein 39.7 11 0.00037 25.7 1.3 48 92-139 19-69 (98)
211 3c3v_A Arachin ARAH3 isoform; 39.5 1.9E+02 0.0066 26.3 9.8 51 212-263 376-427 (510)
212 1fxz_A Glycinin G1; proglycini 39.3 80 0.0027 28.5 7.2 52 211-263 341-393 (476)
213 4i4a_A Similar to unknown prot 39.1 95 0.0032 21.5 8.9 76 213-299 39-117 (128)
214 4h7l_A Uncharacterized protein 38.9 27 0.00091 26.3 3.4 37 103-140 59-97 (157)
215 1lr5_A Auxin binding protein 1 38.7 1.1E+02 0.0039 22.4 7.2 50 213-263 46-98 (163)
216 3fz3_A Prunin; TREE NUT allerg 38.0 1E+02 0.0036 28.1 7.7 54 209-263 395-449 (531)
217 2xlg_A SLL1785 protein, CUCA; 35.0 15 0.0005 29.9 1.5 47 94-140 47-113 (239)
218 1uij_A Beta subunit of beta co 34.6 62 0.0021 28.6 5.7 52 209-263 50-101 (416)
219 3o14_A Anti-ecfsigma factor, C 34.3 1.4E+02 0.0049 23.6 7.4 63 91-164 147-210 (223)
220 3or8_A Transcription elongatio 34.1 61 0.0021 25.4 4.9 38 73-115 7-45 (197)
221 1y3t_A Hypothetical protein YX 33.8 2.1E+02 0.0071 23.8 9.4 65 213-289 51-117 (337)
222 3ksc_A LEGA class, prolegumin; 33.6 1.9E+02 0.0063 26.3 8.7 36 227-263 378-413 (496)
223 2ea7_A 7S globulin-1; beta bar 32.9 67 0.0023 28.6 5.6 52 209-263 62-113 (434)
224 1juh_A Quercetin 2,3-dioxygena 32.4 42 0.0014 28.8 4.2 60 227-297 271-333 (350)
225 2cav_A Protein (canavalin); vi 32.2 64 0.0022 28.9 5.4 52 209-263 87-138 (445)
226 3o14_A Anti-ecfsigma factor, C 30.8 50 0.0017 26.4 4.0 64 211-290 46-109 (223)
227 2e9q_A 11S globulin subunit be 30.2 1.6E+02 0.0056 26.3 7.7 43 83-125 56-98 (459)
228 3kgl_A Cruciferin; 11S SEED gl 29.8 2.5E+02 0.0086 25.2 8.8 36 227-263 343-378 (466)
229 4b29_A Dimethylsulfoniopropion 28.8 2.2E+02 0.0074 22.6 8.5 32 226-263 150-181 (217)
230 2phl_A Phaseolin; plant SEED s 27.8 64 0.0022 28.3 4.5 59 226-289 258-321 (397)
231 3s7i_A Allergen ARA H 1, clone 27.6 94 0.0032 27.5 5.6 49 212-263 48-96 (418)
232 2vec_A YHAK, pirin-like protei 27.0 2.5E+02 0.0087 22.8 8.6 67 95-166 187-253 (256)
233 3s7i_A Allergen ARA H 1, clone 25.9 80 0.0027 27.9 4.8 48 92-139 46-96 (418)
234 2ozi_A Hypothetical protein RP 25.2 27 0.00093 23.7 1.4 50 92-141 19-71 (98)
235 2y0o_A Probable D-lyxose ketol 25.2 2E+02 0.0068 21.9 6.3 36 93-128 56-98 (175)
236 2d5f_A Glycinin A3B4 subunit; 25.0 1.4E+02 0.0048 27.0 6.4 56 85-140 362-423 (493)
237 3hqx_A UPF0345 protein aciad03 23.9 1.9E+02 0.0064 20.2 7.2 65 214-288 43-107 (111)
238 2arc_A ARAC, arabinose operon 23.3 1E+02 0.0036 22.2 4.5 28 111-139 39-66 (164)
239 1x82_A Glucose-6-phosphate iso 22.4 2.6E+02 0.0088 21.2 7.9 33 229-263 97-129 (190)
240 3c3v_A Arachin ARAH3 isoform; 21.8 1.6E+02 0.0056 26.7 6.1 55 85-139 367-427 (510)
241 2e9q_A 11S globulin subunit be 21.4 1.6E+02 0.0054 26.4 5.9 55 209-263 64-137 (459)
242 3qac_A 11S globulin SEED stora 20.8 1.4E+02 0.0049 26.7 5.5 36 227-263 343-378 (465)
243 2vec_A YHAK, pirin-like protei 20.2 3.5E+02 0.012 21.9 9.1 67 213-290 187-253 (256)
No 1
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-54 Score=391.31 Aligned_cols=307 Identities=76% Similarity=1.208 Sum_probs=283.1
Q ss_pred CCCCccCCCCCCC-CCCcCCCccceeEeeccCCCcccccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcc
Q psy18137 14 TSPEETEDLSPLP-SQGQQSARRRGGISAEPVSEEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAM 92 (320)
Q Consensus 14 ~~~~~~~~~~~~~-~~~~~~~~r~~~is~e~~~~~~~~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~ 92 (320)
+++++|||.+|.| .|...++.||++||||++.+....++.++..+|+.++++.+.++|+++++|++|+++++..|+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~r~~vsae~~~~~~~~~~~~~~~~ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~ 153 (381)
T 4din_B 74 QSDSHDEEVSPTPPNPVVKARRRRGGVSAEVYTEEDAVSYVRKVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDAM 153 (381)
T ss_dssp ---------CCCCCCCCCCSSCCCCCCBCCCCCHHHHHTCCCCCCCCCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHC
T ss_pred CCCCcccccccccCccccccCCCCCeEecccCCccccccccCCCCCCCHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhc
Confidence 3444445555555 566777889999999999976666888999999999999999999999999999999999999999
Q ss_pred eeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHH
Q psy18137 93 FPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRR 172 (320)
Q Consensus 93 ~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~ 172 (320)
..+.|++|++|+++|+.++++|||++|.|+++.+++.+..+++|++||+.+++.+.++.++++|.++|.+|.|+++.|..
T Consensus 154 ~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~~v~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ 233 (381)
T 4din_B 154 FPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRR 233 (381)
T ss_dssp EEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETTEEEEEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHH
T ss_pred eEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECCeEeeeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHhhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccE
Q psy18137 173 ILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPV 252 (320)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~ 252 (320)
++..++.....++..+++++++|..++...+..++..+....|.+|++|+++|+.++++|||.+|.|++++....+++..
T Consensus 234 ll~~~~~~~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~ 313 (381)
T 4din_B 234 ILMGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYV 313 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCC
T ss_pred hhhhhhHHHHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997655556567
Q ss_pred EEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhhcccccC
Q psy18137 253 EVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNSFVSLSV 320 (320)
Q Consensus 253 ~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~~~~~~~ 320 (320)
.+..+++|++|||.+++.+.||+++|+|.++|.|+.|++++|.++++++|++++++++.|+++++++|
T Consensus 314 ~v~~l~~Gd~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l~l~~ 381 (381)
T 4din_B 314 EVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFISLTV 381 (381)
T ss_dssp EEEEECTTCEECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHHTTC-
T ss_pred EEEEeCCCCEechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHHhhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999875
No 2
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=100.00 E-value=1.3e-49 Score=346.77 Aligned_cols=290 Identities=80% Similarity=1.258 Sum_probs=277.9
Q ss_pred CCCccceeEeeccCCCcccccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCC
Q psy18137 31 QSARRRGGISAEPVSEEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEG 110 (320)
Q Consensus 31 ~~~~r~~~is~e~~~~~~~~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~ 110 (320)
++++||.+||+|++.+....++.++..+|+.++.+.+.++|+++++|+.|+++++..++..+..+.|++|++|+++|+.+
T Consensus 1 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~ks~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~ 80 (291)
T 2qcs_B 1 KGRRRRGAISAEVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEG 80 (291)
T ss_dssp CCSCCCCCEECCCCCHHHHHTCCCCCCCCCHHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBC
T ss_pred CCCcCCceeeeeccCCccccccCCCCCCCCHHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCC
Confidence 36789999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhh
Q psy18137 111 DNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLS 190 (320)
Q Consensus 111 ~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (320)
+.+|||++|.|.++.++..+..+.+|++||+.+++.+.++.++++|.++|.+|.|+++.|..++..++......+..+++
T Consensus 81 ~~~y~i~~G~v~~~~~g~~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 81 DNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp CEEEEEEECCEEEEETTEEEEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeeEEEEEECCeEEEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhc
Q psy18137 191 RVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLL 270 (320)
Q Consensus 191 ~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~ 270 (320)
++++|..++...+..++..+....|.+|++|+++|+.++.+|+|.+|.|++++....+++...+..+++|++|||.+++.
T Consensus 161 ~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~ll~ 240 (291)
T 2qcs_B 161 KVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLM 240 (291)
T ss_dssp TCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGGTC
T ss_pred hchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHHcC
Confidence 99999999999999999999999999999999999999999999999999997665555667899999999999999999
Q ss_pred CCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhhcccccC
Q psy18137 271 DRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNSFVSLSV 320 (320)
Q Consensus 271 ~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~~~~~~~ 320 (320)
+.+++++++|.++|+++.|++++|.+++..+|+++++++..|.++.++.+
T Consensus 241 ~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~~~~~~~~ 290 (291)
T 2qcs_B 241 NRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNSFVSLSV 290 (291)
T ss_dssp CCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHHHHSCCCC
T ss_pred CCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999887653
No 3
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=100.00 E-value=4.5e-50 Score=365.50 Aligned_cols=293 Identities=39% Similarity=0.685 Sum_probs=254.9
Q ss_pred CCCCCcCCCccceeEeeccCCCccc--ccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCe
Q psy18137 25 LPSQGQQSARRRGGISAEPVSEEDA--TSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGES 102 (320)
Q Consensus 25 ~~~~~~~~~~r~~~is~e~~~~~~~--~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~ 102 (320)
.++|......||.+||||++.+... ..+.++.++|+.++++.+.++|+++++|++|+++++..|+..+..+.|++|++
T Consensus 99 ~~~~~~~~~~rr~~v~ae~~~~~~~~~~~~~~~~~~ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~ 178 (416)
T 3tnp_B 99 FNAPVINRFTRRASVCAEAYNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEH 178 (416)
T ss_dssp ------CTTSCCCCEECCCCCCC--------CCCCCCCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCE
T ss_pred cCCCCcccCCCccEEeccccCCcccccccccccCCCCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCE
Confidence 3456666678999999999986533 56778889999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCeEEEEEeeEEEEEEc----CEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhh
Q psy18137 103 IITQGDEGDNFYVIDQGEVEVYVN----NELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGST 178 (320)
Q Consensus 103 I~~~G~~~~~~yiI~~G~v~v~~~----~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~ 178 (320)
|+++|+.++++|||++|.|+++.. ...+..+.+|++||+++++.+.+|.++++|.++|.+|.|+++.|..++..++
T Consensus 179 I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~ 258 (416)
T 3tnp_B 179 VIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNN 258 (416)
T ss_dssp EECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred EEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcch
Confidence 999999999999999999999874 2378889999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccC-----CCccEE
Q psy18137 179 IRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVE-----EESPVE 253 (320)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~-----~~~~~~ 253 (320)
......+..+++++++|..++...+..++..+....|.+|++|+++|+.++++|||.+|.|++++.... .++...
T Consensus 259 ~~~~~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~ 338 (416)
T 3tnp_B 259 AKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE 338 (416)
T ss_dssp HHHSSSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE
T ss_pred hHHHHHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE
Confidence 998888899999999999999999999999999999999999999999999999999999999855332 166678
Q ss_pred EEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhhccc
Q psy18137 254 VGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNSFVS 317 (320)
Q Consensus 254 ~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~~~~ 317 (320)
+..+++|++|||.+++.+.+++++|+|.++|.|+.|++++|.++++++|+++++++..|.+++.
T Consensus 339 l~~l~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~ 402 (416)
T 3tnp_B 339 IARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLV 402 (416)
T ss_dssp EEEECTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC---------
T ss_pred EEEeCCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988764
No 4
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=100.00 E-value=5.5e-45 Score=318.89 Aligned_cols=265 Identities=32% Similarity=0.555 Sum_probs=251.9
Q ss_pred ccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEE
Q psy18137 52 YVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVT 131 (320)
Q Consensus 52 ~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~ 131 (320)
...+..+|+.++.+.+.++|+++++|+.|+++++..|+..++.+.|++|++|+++|+.++.+|||++|.|+++.++..+.
T Consensus 22 ~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g~~~~ 101 (299)
T 3shr_A 22 QAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLC 101 (299)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETTEEEE
T ss_pred CCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECCEEEE
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhhhhcccCcHHHHhhhhcccc
Q psy18137 132 SVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLE 211 (320)
Q Consensus 132 ~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~ 211 (320)
.+.+|++||+.+++.+.++.++++|.++|++|.|+++.|..++...+......+..+++++++|..+++..+..++..+.
T Consensus 102 ~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~ 181 (299)
T 3shr_A 102 TMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLE 181 (299)
T ss_dssp EECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHSCHHHHHHHTTTCE
T ss_pred EeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhCHHhhhCCHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred eeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEeh
Q psy18137 212 PVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDR 291 (320)
Q Consensus 212 ~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~ 291 (320)
...|.+|++|+++|+.++++|+|.+|.|+++.....+|+...+..+++|++||+.+++.+.+++++|+|.++|+++.|++
T Consensus 182 ~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~ 261 (299)
T 3shr_A 182 ETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDR 261 (299)
T ss_dssp EEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGGSSSEECSSEEEESSSEEEEEEEH
T ss_pred EEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHHhCCCCcceEEEECCCEEEEEEeH
Confidence 99999999999999999999999999999997654677788899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHhhhhcc
Q psy18137 292 ARFERVLGPCADILKRNITQYNSFV 316 (320)
Q Consensus 292 ~~f~~ll~~~~~~~~~~~~~~~~~~ 316 (320)
++|.+++..+|++..+.++.+.+.+
T Consensus 262 ~~f~~ll~~~p~~~~~~~~~l~~r~ 286 (299)
T 3shr_A 262 DSFKHLIGGLDDVSNKAYEDAEAKA 286 (299)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHhhhh
Confidence 9999999999988887777665543
No 5
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-44 Score=302.50 Aligned_cols=243 Identities=43% Similarity=0.757 Sum_probs=231.7
Q ss_pred HHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhh
Q psy18137 64 MAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELA 143 (320)
Q Consensus 64 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ 143 (320)
++.+.++|+++++|++|+++++..++..++.+.|++|++|+++|++++++|||++|.|+++.++..+..+++|++||+.+
T Consensus 2 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~g~~fGe~~ 81 (246)
T 3of1_A 2 LQRLEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFGELA 81 (246)
T ss_dssp CHHHHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTSCCEEECTTCEECHHH
T ss_pred hHHHHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCEEEEecCCCCeeehhH
Confidence 35688999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred hhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEc
Q psy18137 144 LIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVR 223 (320)
Q Consensus 144 ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~ 223 (320)
++.+.++.++++|.++|.+|.|+++.|..++..++.........+++++++|..+++..+..++..+....|.+|++|++
T Consensus 82 l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~ 161 (246)
T 3of1_A 82 LMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIR 161 (246)
T ss_dssp HHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEEC
T ss_pred HhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEe
Confidence 99999999999999999999999999999999999888888899999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHH
Q psy18137 224 QGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCAD 303 (320)
Q Consensus 224 ~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~ 303 (320)
+|+.++++|+|.+|.|++++...+ .+..+++|++|||.+++.+.|+.++++|.++|+++.|++++|.++++++|+
T Consensus 162 ~g~~~~~~y~I~~G~v~v~~~~~~-----~~~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~ 236 (246)
T 3of1_A 162 EGDQGENFYLIEYGAVDVSKKGQG-----VINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVD 236 (246)
T ss_dssp TTSBCCEEEEEEECEEEEEETTTE-----EEEEEETTCEECHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHH
T ss_pred CCCcCCEEEEEEecEEEEEEcCCc-----eEEEcCCCCcccHHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHH
Confidence 999999999999999999864321 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy18137 304 ILKRNITQ 311 (320)
Q Consensus 304 ~~~~~~~~ 311 (320)
+++++...
T Consensus 237 ~~~~~~~~ 244 (246)
T 3of1_A 237 VLKLNDPT 244 (246)
T ss_dssp HHHHTCTT
T ss_pred HHhccCcc
Confidence 99987653
No 6
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=100.00 E-value=5.2e-38 Score=291.29 Aligned_cols=273 Identities=22% Similarity=0.312 Sum_probs=224.8
Q ss_pred CCCcCCCccceeEeeccCCCcccccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEec
Q psy18137 27 SQGQQSARRRGGISAEPVSEEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQ 106 (320)
Q Consensus 27 ~~~~~~~~r~~~is~e~~~~~~~~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~ 106 (320)
.|.-..+.||.++|+|.+. .+.+++.+|+.++.+.+.++|+++++|.+|+++++..++..+..+.|++|++|+++
T Consensus 5 ~~~~~~~~~~~~~~~e~~~-----~l~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~ 79 (469)
T 1o7f_A 5 IPMVAAHAAHSQSSAEWIA-----CLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQ 79 (469)
T ss_dssp --------------CHHHH-----HHTSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECT
T ss_pred cchhhhccccccCcHHHHH-----HhcCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeC
Confidence 3444567788899999884 35678889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEeeEEEEEEcC-------EEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhH
Q psy18137 107 GDEGDNFYVIDQGEVEVYVNN-------ELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTI 179 (320)
Q Consensus 107 G~~~~~~yiI~~G~v~v~~~~-------~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~ 179 (320)
|+.++++|||++|.|+++... ..+..+++|++||+.+ +.+.++.++++|.++|.+|.|+++.|..++.++|.
T Consensus 80 Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~ 158 (469)
T 1o7f_A 80 GDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (469)
T ss_dssp TSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGG
T ss_pred CCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHH
Confidence 999999999999999998732 5889999999999999 99999999999999999999999999999876553
Q ss_pred HHhh----------------------------------------------------------------------------
Q psy18137 180 RKRK---------------------------------------------------------------------------- 183 (320)
Q Consensus 180 ~~~~---------------------------------------------------------------------------- 183 (320)
....
T Consensus 159 ~~~~l~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~rla~~Ll~~~~~~~~~~~~~~~~~~~~~t~~ela~~llg~~~ 238 (469)
T 1o7f_A 159 YMAGLLAPPYGVMETGSNNDRIPDKENVPSEKILRAGKILRIAILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTS 238 (469)
T ss_dssp GTTTTSCTTTSCSCC------------CCCSHHHHHHHHHHHHHHHHCGGGSEEEECSSCEEEEEEEHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHhccCcccCCCcCCCchHHHHHHHHHHHHHHHhcCCcceeeccccceEeeeeccccchHHHHHhcCC
Confidence 1100
Q ss_pred --------------------------------------------------------------------------------
Q psy18137 184 -------------------------------------------------------------------------------- 183 (320)
Q Consensus 184 -------------------------------------------------------------------------------- 183 (320)
T Consensus 239 ~t~SR~~~~~~l~~L~~~G~I~~~~~~i~i~d~~~L~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (469)
T 1o7f_A 239 CVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRM 318 (469)
T ss_dssp CCSCHHHHHHHHHHHHHTTSEEESSCCSSCCSSSCEEEEGGGSSSSCCCCCTHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccceeeccccceeeecceEEEEehhhhccCCCcchhhhhhhhHHHHHHHHHHhhcCchHHHHH
Confidence
Q ss_pred ---------------HHHHHhhhhhhcccCcHHHHhhhhcccce-eEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccC
Q psy18137 184 ---------------LYEEFLSRVSILESLEKWERLTVADSLEP-VSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVE 247 (320)
Q Consensus 184 ---------------~~~~~l~~~~~~~~l~~~~~~~l~~~~~~-~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~ 247 (320)
....+++++++|..+++..+..++..+.. ..|++|++|+++|+.++.+|+|.+|.|+++...
T Consensus 319 ~l~~~~~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~-- 396 (469)
T 1o7f_A 319 ILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG-- 396 (469)
T ss_dssp HTTSCTTSCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETT--
T ss_pred HHcCCchhcCHHHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcC--
Confidence 01234455677888888888899998875 489999999999999999999999999998531
Q ss_pred CCccEEEEEeCCCCeecHHhHhcCCCceeEEEEec-CeEEEEEehHHHHHhhcCHHHHHHHHHH
Q psy18137 248 EESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKG-PLKCVKLDRARFERVLGPCADILKRNIT 310 (320)
Q Consensus 248 ~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~-~~~v~~i~~~~f~~ll~~~~~~~~~~~~ 310 (320)
. ..+..+++|++||+.+++.+.|+.++|+|.+ +|+++.|++++|..++..+|++..+..+
T Consensus 397 --~-~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e 457 (469)
T 1o7f_A 397 --K-GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 457 (469)
T ss_dssp --T-EEEEEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC------
T ss_pred --C-eeEEEecCCCEEEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHh
Confidence 1 3689999999999999999999999999998 7999999999999999999887665443
No 7
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=100.00 E-value=3.1e-37 Score=309.45 Aligned_cols=248 Identities=22% Similarity=0.348 Sum_probs=220.2
Q ss_pred ccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---
Q psy18137 50 TSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN--- 126 (320)
Q Consensus 50 ~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~--- 126 (320)
..+.+.+..|++++++.|...|+++++|++|++.++..||++|.++.|++|++||++||.+++||||++|+|.|+..
T Consensus 23 ~~L~K~p~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 23 ACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHHSCSSSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HHhcCCcccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----CEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHh--------------------
Q psy18137 127 ----NELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKR-------------------- 182 (320)
Q Consensus 127 ----~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~-------------------- 182 (320)
+..+..+++|++||+ +++++.||++|++|.++|++|+|++++|+.++.+++....
T Consensus 103 ~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 181 (999)
T 4f7z_A 103 SHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGVMETGSNNDRIP 181 (999)
T ss_dssp CTTSCEEEEEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHTTTSCTTTSCSCCSSCC----
T ss_pred CCCCceeEEEecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHHHHHHHHHHHHHhhhhhhhcCc
Confidence 347889999999999 8999999999999999999999999999999875542211
Q ss_pred --------------------------------------------------------------------------------
Q psy18137 183 -------------------------------------------------------------------------------- 182 (320)
Q Consensus 183 -------------------------------------------------------------------------------- 182 (320)
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~q~~l~~~~~~~ 261 (999)
T 4f7z_A 182 DKENVPSEKILRAGKILRIAILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNH 261 (999)
T ss_dssp --CCSCCHHHHHHHHHHHHHHHHHCGGGSEEEEETTEEEEEEEEHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred ccccCchhhcccccccccchhccccccccccccccccccccccccccccccccccCcccccccccchhhhhhcccccccc
Confidence
Q ss_pred -----------------------------------------------------------------------hHHHHHhhh
Q psy18137 183 -----------------------------------------------------------------------KLYEEFLSR 191 (320)
Q Consensus 183 -----------------------------------------------------------------------~~~~~~l~~ 191 (320)
.....++.+
T Consensus 262 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~l~k~~~~rt~ed~e~l~e~L~~ 341 (999)
T 4f7z_A 262 VDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRKPPGQRTVDDLEIIYDELLH 341 (999)
T ss_dssp TTCCSSCCSSSCEEEEGGGGSTTCCCCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCGGGCCHHHHHHHHHHHTT
T ss_pred chhccccccchhhhhhhccccccccccccccccchhhhhhhhhhhhcccccchhhhhhhcCCcccccHHHHHHHHHHHHh
Confidence 112345777
Q ss_pred hhhcccCcHHHHhhhhccccee-EeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhc
Q psy18137 192 VSILESLEKWERLTVADSLEPV-SFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLL 270 (320)
Q Consensus 192 ~~~~~~l~~~~~~~l~~~~~~~-~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~ 270 (320)
++.|..++...+..|+..+... .+++|++|+++||.++.+|||++|.|.|++.. ...++.|++||+|||.++++
T Consensus 342 i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~-----~~~v~~L~~Gd~FGElALL~ 416 (999)
T 4f7z_A 342 IKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG-----KGVVCTLHEGDDFGKLALVN 416 (999)
T ss_dssp CGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETT-----TEEEEEEETTCEECGGGGTC
T ss_pred hHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcC-----CcceEEecCCCcccchhhcc
Confidence 8899999999999999998865 45789999999999999999999999998531 23589999999999999999
Q ss_pred CCCceeEEEEecC-eEEEEEehHHHHHhhcCHHH
Q psy18137 271 DRPRAATVVAKGP-LKCVKLDRARFERVLGPCAD 303 (320)
Q Consensus 271 ~~~~~~tv~a~~~-~~v~~i~~~~f~~ll~~~~~ 303 (320)
+.||.+||+|.++ |++++|++++|.+++++..+
T Consensus 417 ~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~e~ 450 (999)
T 4f7z_A 417 DAPRAASIVLREDNCHFLRVDKEDGNRILRDVEA 450 (999)
T ss_dssp SCBCSSEEEESSSSEEEEEEEHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEecCceEEEEeeHHHHHHHHhHHHH
Confidence 9999999999885 99999999999999877554
No 8
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.95 E-value=2.8e-27 Score=186.19 Aligned_cols=153 Identities=81% Similarity=1.255 Sum_probs=126.2
Q ss_pred CCccceeEeeccCCCcccccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCC
Q psy18137 32 SARRRGGISAEPVSEEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGD 111 (320)
Q Consensus 32 ~~~r~~~is~e~~~~~~~~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~ 111 (320)
+|+||++||+|++.+.....+.++..+++.++.+.+.++|+++++|..|+++.+..++..++.+.|++|++|+++|+.++
T Consensus 1 ~~~~~~~vs~e~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~ 80 (154)
T 3pna_A 1 GRRRRGAISAEVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGD 80 (154)
T ss_dssp ---------------------CCCCCCCCHHHHHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCC
T ss_pred CCcccccccccccCCCCccccccccCCCCHHHHHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCC
Confidence 47899999999999888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhH
Q psy18137 112 NFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKL 184 (320)
Q Consensus 112 ~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 184 (320)
++|||++|.|+++.+++.+..+.+|++||+.+++.+.++.++++|.++|.++.|+++.|..++.+++..++.+
T Consensus 81 ~~y~i~~G~v~~~~~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~ 153 (154)
T 3pna_A 81 NFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 153 (154)
T ss_dssp EEEEEEESCEEEEETTEEEEEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC---
T ss_pred eEEEEEecEEEEEECCEEEEEecCCCEeeehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988776543
No 9
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.93 E-value=2.7e-25 Score=176.08 Aligned_cols=152 Identities=43% Similarity=0.736 Sum_probs=135.4
Q ss_pred cceeEeeccCCCccc--ccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCe
Q psy18137 35 RRGGISAEPVSEEDA--TSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDN 112 (320)
Q Consensus 35 r~~~is~e~~~~~~~--~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~ 112 (320)
||.+||||++.+... ..+.++..+++.++.+.+.++|+++++|.+|+++.+..++..++.+.|++|++|+++|+.+++
T Consensus 2 rr~~v~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~ 81 (161)
T 3idb_B 2 RRASVCAEAYNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDN 81 (161)
T ss_dssp CCCCEECCCCCTTC--------CCCCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCE
T ss_pred CceeEEeccCCccchhcccCCcccCCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcE
Confidence 899999999985433 577888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeEEEEEEc--C--EEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHH
Q psy18137 113 FYVIDQGEVEVYVN--N--ELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYE 186 (320)
Q Consensus 113 ~yiI~~G~v~v~~~--~--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 186 (320)
+|||++|.|+++.. + ..+..+++|++||+.+++.+.++.++++|.++|.++.|+++.|.+++.++|...+.++.
T Consensus 82 ~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 159 (161)
T 3idb_B 82 FYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 159 (161)
T ss_dssp EEEEEESEEEEEEEETTEEEEEEEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred EEEEEeCEEEEEEcCCCCeEEEEEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence 99999999999872 2 37888999999999999999999999999999999999999999999999988766554
No 10
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.90 E-value=8.3e-23 Score=157.60 Aligned_cols=133 Identities=32% Similarity=0.573 Sum_probs=120.9
Q ss_pred ccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEE
Q psy18137 52 YVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVT 131 (320)
Q Consensus 52 ~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~ 131 (320)
...+..+|+..+.+.+.++|+++++|++|+++.+..++..++.+.|++|++|+++|+.++++|||++|.|++..++..+.
T Consensus 6 ~~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~~~~ 85 (139)
T 3ocp_A 6 VTLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLC 85 (139)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECCEEEE
Confidence 35677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhH
Q psy18137 132 SVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKL 184 (320)
Q Consensus 132 ~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 184 (320)
.+++|++||+.+++.+.++.++++|.++|.++.|+++.|.+++.++|..+++.
T Consensus 86 ~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~~ 138 (139)
T 3ocp_A 86 TMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 138 (139)
T ss_dssp EECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC--------
T ss_pred EeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhhc
Confidence 99999999999999999999999999999999999999999999999887553
No 11
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.85 E-value=2.5e-20 Score=151.18 Aligned_cols=136 Identities=24% Similarity=0.314 Sum_probs=123.1
Q ss_pred ccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcC-----E
Q psy18137 54 KKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN-----E 128 (320)
Q Consensus 54 ~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~-----~ 128 (320)
....+++....+.+.++|+++|+|.+|+++.+..++..++.+.|++|++|+++|+.++++|||++|.|+++... .
T Consensus 24 li~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~ 103 (187)
T 3gyd_A 24 LVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQ 103 (187)
T ss_dssp CEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEE
T ss_pred HhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeE
Confidence 34455666677889999999999999999999999999999999999999999999999999999999998742 3
Q ss_pred EEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHh
Q psy18137 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFL 189 (320)
Q Consensus 129 ~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 189 (320)
.+..+++|++||+.+++.+.++.++++|.++|.++.|+++.|..++.++|.....++..+.
T Consensus 104 ~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~ 164 (187)
T 3gyd_A 104 TIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLL 164 (187)
T ss_dssp EEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred EEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999999999999999998877664333
No 12
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.84 E-value=2.2e-20 Score=143.60 Aligned_cols=130 Identities=28% Similarity=0.386 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 61 YKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 61 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
.++...+.++|+++++|..|+++.+..++..++.+.|++|++|+++|+.++++|||++|.++++..+ ...+++|++||
T Consensus 3 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~~~~~G~~~G 80 (138)
T 1vp6_A 3 RGDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFG 80 (138)
T ss_dssp HHHHHHHHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--CEEECTTCEEC
T ss_pred hhhHHHHHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--cceECCCCEee
Confidence 3456678899999999999999999999999999999999999999999999999999999998766 45789999999
Q ss_pred hhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 141 ELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 141 e~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
+.+++.+.++.++++|.++|.++.|+++.|.+++.++|.....+...+.+++
T Consensus 81 ~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~ 132 (138)
T 1vp6_A 81 EMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 132 (138)
T ss_dssp HHHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred ehHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998877766665554
No 13
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.84 E-value=3.6e-20 Score=146.04 Aligned_cols=125 Identities=22% Similarity=0.345 Sum_probs=117.2
Q ss_pred HHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhh
Q psy18137 64 MAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELA 143 (320)
Q Consensus 64 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ 143 (320)
.....++|+++++|++++++.+..++..++.+.|++|++|+++|+.++++|+|++|.|+++..+..+..+++|++||+.+
T Consensus 22 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~~fG~~~ 101 (160)
T 4f8a_A 22 VHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVF 101 (160)
T ss_dssp HHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEETTEEEEEEETTCEEECCT
T ss_pred HHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEECCEEEEEecCCCEeCcHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC--CCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHH
Q psy18137 144 LIYG--TPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEF 188 (320)
Q Consensus 144 ll~~--~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 188 (320)
++.+ .++.++++|.++|+++.|+++.|.+++.++|.....+...+
T Consensus 102 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 102 WKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp TTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred HhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 69999999999999999999999999999998877665544
No 14
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.84 E-value=4.5e-21 Score=151.67 Aligned_cols=139 Identities=27% Similarity=0.392 Sum_probs=120.4
Q ss_pred hhhHHHHhhhhhHHHhhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEecc
Q psy18137 167 RDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTV 246 (320)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~ 246 (320)
...+..++..........+..+++++++|..+++..+..++..+....|.+|++|+++|+.++++|+|.+|.|+++. .
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~ 95 (161)
T 3idb_B 18 DDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV--K 95 (161)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE--E
T ss_pred cccCCcccCCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE--c
Confidence 34444555444455566677899999999999999999999999999999999999999999999999999999996 5
Q ss_pred CCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHH
Q psy18137 247 EEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307 (320)
Q Consensus 247 ~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~ 307 (320)
.+|+...+..+++|++||+.+++.+.++.++++|.++|.++.|++++|.+++..+|.+..+
T Consensus 96 ~~g~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~ 156 (161)
T 3idb_B 96 CDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 156 (161)
T ss_dssp ETTEEEEEEEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCC
T ss_pred CCCCeEEEEEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHH
Confidence 5677788999999999999999999999999999999999999999999999998876543
No 15
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.84 E-value=2.2e-20 Score=144.20 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=112.9
Q ss_pred HHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---C--EE---EEecCCCCeee
Q psy18137 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---N--EL---VTSVGEGGSFG 140 (320)
Q Consensus 69 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~--~~---~~~~~~G~~fG 140 (320)
++|+++|+|++++++.+..++..++.+.|++|++|+++|+.++++|+|++|.|+++.. + .. +..+++|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 5789999999999999999999999999999999999999999999999999999862 2 25 88999999999
Q ss_pred hhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 141 ELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 141 e~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
+.+++.+.++.++++|.++|+++.|+++.|.+++.++|.....++..+.+.+
T Consensus 86 ~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 137 (142)
T 3mdp_A 86 VSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAV 137 (142)
T ss_dssp GGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887776665543
No 16
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.83 E-value=7.1e-20 Score=149.82 Aligned_cols=128 Identities=23% Similarity=0.369 Sum_probs=117.6
Q ss_pred HHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEE-cCEEEEecCCCCeeehh
Q psy18137 64 MAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYV-NNELVTSVGEGGSFGEL 142 (320)
Q Consensus 64 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~-~~~~~~~~~~G~~fGe~ 142 (320)
.....++|+++|+|++++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. ++..+..+++|++||+.
T Consensus 66 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~ 145 (198)
T 2ptm_A 66 NYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEI 145 (198)
T ss_dssp HHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCH
T ss_pred HHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEechH
Confidence 34456899999999999999999999999999999999999999999999999999999986 55688999999999999
Q ss_pred hhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhh
Q psy18137 143 ALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSR 191 (320)
Q Consensus 143 ~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (320)
+++.+.++.++++|.++|.++.|++++|..++..+|.....+...+.++
T Consensus 146 ~~~~~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~r 194 (198)
T 2ptm_A 146 CLLTRERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRR 194 (198)
T ss_dssp HHHHSSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred HHcCCCccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887766655444
No 17
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.83 E-value=1.6e-19 Score=141.37 Aligned_cols=132 Identities=21% Similarity=0.313 Sum_probs=119.1
Q ss_pred HHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CE--EEEecCCCCe
Q psy18137 64 MAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NE--LVTSVGEGGS 138 (320)
Q Consensus 64 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~--~~~~~~~G~~ 138 (320)
...+.++|+++++|..++++.+..++..++.+.|++|++|+++|+.++++|||++|.|+++.. ++ .+..+++|++
T Consensus 7 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~ 86 (154)
T 2z69_A 7 QRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNT 86 (154)
T ss_dssp HHHHHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEE
T ss_pred ChhHHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCe
Confidence 346778999999999999999999999999999999999999999999999999999999863 22 6788999999
Q ss_pred eehhhhhcCCC-cceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhhhhc
Q psy18137 139 FGELALIYGTP-RAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSIL 195 (320)
Q Consensus 139 fGe~~ll~~~~-~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (320)
||+.+++.+.+ +.++++|.++|.++.|+++.|..++.++|.....+...+.+++...
T Consensus 87 ~G~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~~ 144 (154)
T 2z69_A 87 FAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQR 144 (154)
T ss_dssp ESGGGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTCC
T ss_pred eccHhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 99999999998 9999999999999999999999999999999888777766665433
No 18
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.82 E-value=6.8e-20 Score=141.45 Aligned_cols=128 Identities=17% Similarity=0.220 Sum_probs=111.9
Q ss_pred HHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEE---EEEeCCCCee
Q psy18137 187 EFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVE---VGKLGPSDYF 263 (320)
Q Consensus 187 ~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~---~~~l~~G~~f 263 (320)
.+++++++|..+++..+..++..+....|++|++|+++|+.++++|+|.+|.|+++.. ..+++... +..+++|++|
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYS-NGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC----------CEEEEECTTCEE
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEE-CCCCCceEeeeEEEecCCCEe
Confidence 4688999999999999999999999999999999999999999999999999999843 45566667 8999999999
Q ss_pred cHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhhc
Q psy18137 264 GEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNSF 315 (320)
Q Consensus 264 Ge~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~~ 315 (320)
|+.+++.+.++.++++|.++|+++.|++++|.+++..+|++....++...+.
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 136 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAA 136 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998777665543
No 19
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.82 E-value=9.7e-20 Score=141.69 Aligned_cols=126 Identities=28% Similarity=0.446 Sum_probs=115.2
Q ss_pred HHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CE--EEEecCCCCeeehh
Q psy18137 68 SKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NE--LVTSVGEGGSFGEL 142 (320)
Q Consensus 68 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~--~~~~~~~G~~fGe~ 142 (320)
.++++++++|..++++.+..++..++.+.|++|++|+++|++++++|||++|.|+++.. ++ .+..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 46799999999999999999999999999999999999999999999999999999863 22 78899999999999
Q ss_pred hhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhhh
Q psy18137 143 ALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVS 193 (320)
Q Consensus 143 ~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (320)
+++.+.++.++++|.++|.++.|+++.|..++.++|.....+...+.+++.
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~ 134 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLR 134 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988777666555543
No 20
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.82 E-value=1.2e-19 Score=150.04 Aligned_cols=124 Identities=23% Similarity=0.299 Sum_probs=116.0
Q ss_pred HHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCC
Q psy18137 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGT 148 (320)
Q Consensus 69 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~ 148 (320)
..+.++|+|++++++.+..++..++.+.|.+|++|+++|+.++++|||.+|.|+++.++..+..+++|++||+.+++.+.
T Consensus 75 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~~ 154 (212)
T 3ukn_A 75 KELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKEQ 154 (212)
T ss_dssp CGGGGSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTTCEEECSCCSSSS
T ss_pred HHHHhcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECCeEEEEecCCCCcCcHHhccCC
Confidence 34558999999999999999999999999999999999999999999999999999988899999999999999999998
Q ss_pred --CcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 149 --PRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 149 --~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
++.++++|.++|.++.|++++|..++..+|.....+...+.+++
T Consensus 155 ~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l 200 (212)
T 3ukn_A 155 VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL 200 (212)
T ss_dssp CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999888777665554
No 21
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=142.26 Aligned_cols=124 Identities=21% Similarity=0.253 Sum_probs=113.1
Q ss_pred ccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeC-CCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecC
Q psy18137 56 VVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCL-PGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVG 134 (320)
Q Consensus 56 ~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~-~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~ 134 (320)
+..++.++...+.++|+++++|..|+++.+..++..++.+.|+ +|++|+++|+.++++|||++|.|+++..+.....+.
T Consensus 3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~~~l~ 82 (134)
T 2d93_A 3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENLF 82 (134)
T ss_dssp CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCEEEEC
T ss_pred hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcEEEec
Confidence 4567777788999999999999999999999999999999999 999999999999999999999999987433337799
Q ss_pred CCCeeehhhhhcCCCcceEE-eeeceEEEEEEchhhHHHHhhhhhH
Q psy18137 135 EGGSFGELALIYGTPRAATV-RAKTDVKLWGLDRDSYRRILMGSTI 179 (320)
Q Consensus 135 ~G~~fGe~~ll~~~~~~~tv-~a~~~~~~~~i~~~~~~~~~~~~~~ 179 (320)
+|++||+.+++.+.++.+++ +|.++|.++.|+++.|..++.+.+.
T Consensus 83 ~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 83 MGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp TTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred CCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 99999999999999999999 9999999999999999999876543
No 22
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.82 E-value=7.7e-20 Score=150.09 Aligned_cols=129 Identities=26% Similarity=0.425 Sum_probs=116.9
Q ss_pred HHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhh
Q psy18137 65 AALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELAL 144 (320)
Q Consensus 65 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~l 144 (320)
....++|+++|+|.+++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+.....+++|++||+.++
T Consensus 68 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fGe~~~ 147 (202)
T 3bpz_A 68 FNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICL 147 (202)
T ss_dssp HHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCEECHHHH
T ss_pred HHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeEEEEcCCCEeccHHH
Confidence 44567999999999999999999999999999999999999999999999999999999876554557899999999999
Q ss_pred hcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhhh
Q psy18137 145 IYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVS 193 (320)
Q Consensus 145 l~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (320)
+.+.++.++++|.++|.++.|++++|..++..+|.....+...+..++.
T Consensus 148 ~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (202)
T 3bpz_A 148 LTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLD 196 (202)
T ss_dssp HHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHH
T ss_pred hcCCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888776665555543
No 23
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.80 E-value=6e-19 Score=138.02 Aligned_cols=131 Identities=18% Similarity=0.293 Sum_probs=115.2
Q ss_pred HHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 184 LYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 184 ~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
....+++++++|..+++..+..++..+....|++|++|+++|+.++++|+|.+|.|+++. ...+|+...+..+++|++|
T Consensus 9 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~~~g~~~~~~~~~~G~~~ 87 (154)
T 2z69_A 9 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYR-LTPEGQEKILEVTNERNTF 87 (154)
T ss_dssp HHHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEC-CCC-----CCEEECTTEEE
T ss_pred hHHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEE-ECCCCCEEEEEEccCCCee
Confidence 345678999999999999999999999999999999999999999999999999999984 3455666778999999999
Q ss_pred cHHhHhcCCC-ceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhhc
Q psy18137 264 GEIALLLDRP-RAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNSF 315 (320)
Q Consensus 264 Ge~~ll~~~~-~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~~ 315 (320)
|+.+++.+.+ +.++++|.++|+++.|++++|..++..+|++....+....+.
T Consensus 88 G~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~r 140 (154)
T 2z69_A 88 AEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTR 140 (154)
T ss_dssp SGGGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 9999999988 999999999999999999999999999999888777665443
No 24
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.80 E-value=8.3e-19 Score=142.15 Aligned_cols=126 Identities=17% Similarity=0.345 Sum_probs=116.2
Q ss_pred hHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCe
Q psy18137 183 KLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDY 262 (320)
Q Consensus 183 ~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~ 262 (320)
..+..+++++++|..+++..+..++..+....|++|++|+++|+.++.+|+|.+|.|+++.. ..+|+...+..+++|++
T Consensus 35 ~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~-~~~g~~~~~~~~~~G~~ 113 (187)
T 3gyd_A 35 EEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKD-IPNKGIQTIAKVGAGAI 113 (187)
T ss_dssp HHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEE-ETTTEEEEEEEEETTCE
T ss_pred HHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEE-CCCCCeEEEEEccCCCe
Confidence 34567899999999999999999999999999999999999999999999999999999955 45667788999999999
Q ss_pred ecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHH
Q psy18137 263 FGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNI 309 (320)
Q Consensus 263 fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~ 309 (320)
||+.+++.+.++.++++|.++|+++.|++++|..++..+|++..+.+
T Consensus 114 fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~ 160 (187)
T 3gyd_A 114 IGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVL 160 (187)
T ss_dssp ESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred eeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 99999999999999999999999999999999999999998876655
No 25
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.80 E-value=3e-19 Score=138.92 Aligned_cols=127 Identities=20% Similarity=0.398 Sum_probs=115.7
Q ss_pred HHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecH
Q psy18137 186 EEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGE 265 (320)
Q Consensus 186 ~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 265 (320)
..+++++++|..+++..+..++..++...|++|++|+++|+.++.+|+|.+|.|+++.. ..+|+...+..+++|++||+
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-~~~g~~~~~~~~~~g~~~G~ 82 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRT-SPDGRENMLAVVGPSELIGE 82 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEE-CTTSSEEEEEEECTTCEESG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEE-CCCCcEEEEEEcCCcCEech
Confidence 45688999999999999999999999999999999999999999999999999999854 45577788999999999999
Q ss_pred HhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhh
Q psy18137 266 IALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYN 313 (320)
Q Consensus 266 ~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~ 313 (320)
.+++.+.++.++++|.++|+++.|++++|.+++..+|++....+....
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~ 130 (149)
T 2pqq_A 83 LSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVA 130 (149)
T ss_dssp GGGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHH
T ss_pred HHhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888766655543
No 26
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.80 E-value=1e-18 Score=142.90 Aligned_cols=129 Identities=21% Similarity=0.268 Sum_probs=116.7
Q ss_pred hHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCe
Q psy18137 183 KLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDY 262 (320)
Q Consensus 183 ~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~ 262 (320)
.....+++++++|..+++..+..++..++...|.+|++|+++|+.++.+|+|.+|.|+++. .+|+ .+..+++|++
T Consensus 67 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~---~~g~--~~~~l~~G~~ 141 (198)
T 2ptm_A 67 YNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM---SDGV--IATSLSDGSY 141 (198)
T ss_dssp HHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC---TTSC--EEEEECTTCE
T ss_pred HHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe---cCCe--EEEEecCCCE
Confidence 3456788999999999999999999999999999999999999999999999999999984 3343 6889999999
Q ss_pred ecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhhcc
Q psy18137 263 FGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNSFV 316 (320)
Q Consensus 263 fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~~~ 316 (320)
||+.+++.+.+++++++|.++|+++.|++++|..++..+|++....+......+
T Consensus 142 fGe~~~~~~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl 195 (198)
T 2ptm_A 142 FGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRL 195 (198)
T ss_dssp ESCHHHHHSSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC
T ss_pred echHHHcCCCccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887776655443
No 27
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.79 E-value=1.4e-18 Score=133.69 Aligned_cols=120 Identities=26% Similarity=0.442 Sum_probs=105.4
Q ss_pred hhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCC
Q psy18137 182 RKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSD 261 (320)
Q Consensus 182 ~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~ 261 (320)
...+..+++++++|..+++..+..++..++...|.+|++|+++|+.++.+|+|.+|.|++.. ++ ..+..+++|+
T Consensus 18 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~----~g--~~~~~~~~G~ 91 (139)
T 3ocp_A 18 KDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK----EG--VKLCTMGPGK 91 (139)
T ss_dssp HHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE----TT--EEEEEECTTC
T ss_pred HHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE----CC--EEEEEeCCCC
Confidence 44567789999999999999999999999999999999999999999999999999999964 22 3689999999
Q ss_pred eecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHH
Q psy18137 262 YFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307 (320)
Q Consensus 262 ~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~ 307 (320)
+||+.+++.+.++.++++|.++|+++.|++++|.+++..+|.+.++
T Consensus 92 ~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 92 VFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp EESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred EeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 9999999999999999999999999999999999999999987654
No 28
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.8e-18 Score=145.99 Aligned_cols=134 Identities=27% Similarity=0.459 Sum_probs=118.0
Q ss_pred cccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCE
Q psy18137 49 ATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128 (320)
Q Consensus 49 ~~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~ 128 (320)
+..+..............+..+++++++|..+++..+..++..+..+.|++|++|+++|+.++++|||.+|.|+++..+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~ 184 (246)
T 3of1_A 105 RLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ 184 (246)
T ss_dssp HHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTT
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCC
Confidence 33444433333334456677899999999999999999999999999999999999999999999999999999998665
Q ss_pred -EEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHh
Q psy18137 129 -LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKR 182 (320)
Q Consensus 129 -~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 182 (320)
.+..+++|++||+.+++.+.+|.++++|.++|.++.|+++.|.+++...|....
T Consensus 185 ~~~~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 185 GVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp EEEEEEETTCEECHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred ceEEEcCCCCcccHHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 889999999999999999999999999999999999999999999988876643
No 29
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.78 E-value=1.5e-18 Score=145.29 Aligned_cols=125 Identities=25% Similarity=0.345 Sum_probs=114.4
Q ss_pred HHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcC-----EEEEecCCCCeeehh
Q psy18137 68 SKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN-----ELVTSVGEGGSFGEL 142 (320)
Q Consensus 68 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~-----~~~~~~~~G~~fGe~ 142 (320)
.++|+++|+|..|+++++..++..++.+.|++|++|+++|++++++|+|++|.|+++... ..+..+++|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 578999999999999999999999999999999999999999999999999999998732 378899999999999
Q ss_pred hhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 143 ALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 143 ~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
+++.+.++.++++|.++|+++.|+++.|..++..+|.....+...+.+++
T Consensus 85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 134 (231)
T 3e97_A 85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRV 134 (231)
T ss_dssp TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988777665554443
No 30
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.78 E-value=3.3e-18 Score=134.68 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=115.7
Q ss_pred hhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCC
Q psy18137 182 RKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSD 261 (320)
Q Consensus 182 ~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~ 261 (320)
......+++++++|..+++..+..++..++...|++|++|+++|+.++++|+|.+|.|+++.. ...+..+++|+
T Consensus 22 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~------~~~~~~~~~G~ 95 (160)
T 4f8a_A 22 VHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD------DEVVAILGKGD 95 (160)
T ss_dssp HHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET------TEEEEEEETTC
T ss_pred HHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC------CEEEEEecCCC
Confidence 344567899999999999999999999999999999999999999999999999999999851 25789999999
Q ss_pred eecHHhHhcC--CCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhh
Q psy18137 262 YFGEIALLLD--RPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNS 314 (320)
Q Consensus 262 ~fGe~~ll~~--~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~ 314 (320)
+||+.+++.+ .++.++++|.++|+++.|++++|.+++..+|++....+.....
T Consensus 96 ~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 150 (160)
T 4f8a_A 96 VFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLIL 150 (160)
T ss_dssp EEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHCCC
T ss_pred EeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 6899999999999999999999999999999999887776544
No 31
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.78 E-value=2.7e-18 Score=142.11 Aligned_cols=122 Identities=23% Similarity=0.366 Sum_probs=109.7
Q ss_pred HhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CE--EEEecCCCCeeehhhhh
Q psy18137 71 IAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NE--LVTSVGEGGSFGELALI 145 (320)
Q Consensus 71 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~--~~~~~~~G~~fGe~~ll 145 (320)
|+++|+|.+++++++..++..++.+.|++|++|+++|++++++|||.+|.|+++.. ++ .+..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 57899999999999999999999999999999999999999999999999999863 33 78889999999999999
Q ss_pred cCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 146 YGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 146 ~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
.+.++.++++|.++|.++.|+++.|..++.++|.....+...+..++
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~ 127 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRL 127 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877665555444
No 32
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.78 E-value=1.3e-18 Score=136.49 Aligned_cols=122 Identities=30% Similarity=0.467 Sum_probs=110.0
Q ss_pred HHHhhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeC
Q psy18137 179 IRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLG 258 (320)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~ 258 (320)
......+..+++++++|..+++..+..++..+....|.+|++|+++|+.++++|+|.+|.|+++. ++ ..+..++
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~----~~--~~~~~~~ 103 (154)
T 3pna_A 30 YKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV----NN--EWATSVG 103 (154)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE----TT--EEEEEEC
T ss_pred HHHHHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE----CC--EEEEEec
Confidence 33345567789999999999999999999999999999999999999999999999999999985 22 3678899
Q ss_pred CCCeecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHH
Q psy18137 259 PSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILK 306 (320)
Q Consensus 259 ~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~ 306 (320)
+|++||+.+++.+.++.++++|.++|+++.|++++|.+++..++...+
T Consensus 104 ~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 104 EGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp TTCEECCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred CCCEeeehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 999999999999999999999999999999999999999988876543
No 33
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.78 E-value=2.3e-18 Score=152.26 Aligned_cols=124 Identities=20% Similarity=0.335 Sum_probs=115.0
Q ss_pred HHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCE----EEEecCCCCeeehhhh
Q psy18137 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE----LVTSVGEGGSFGELAL 144 (320)
Q Consensus 69 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~----~~~~~~~G~~fGe~~l 144 (320)
++|+++|+|+.|+++++..++..++.+.|++|++|+++|+.++++|||++|.|+++..+. .+..+.+|++||+.++
T Consensus 13 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~l 92 (333)
T 4ava_A 13 EDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIAL 92 (333)
T ss_dssp HHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHHH
T ss_pred HHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHHh
Confidence 789999999999999999999999999999999999999999999999999999987432 8889999999999999
Q ss_pred hcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhhh
Q psy18137 145 IYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVS 193 (320)
Q Consensus 145 l~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (320)
+.+.++.++++|.++|+++.|+++.|..++ ++|.....+...+.+++.
T Consensus 93 ~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 93 LRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp HHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 899888877766665554
No 34
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.78 E-value=3.1e-18 Score=142.93 Aligned_cols=127 Identities=24% Similarity=0.485 Sum_probs=116.2
Q ss_pred HHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecH
Q psy18137 186 EEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGE 265 (320)
Q Consensus 186 ~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 265 (320)
..+++++++|..+++..+..++..+....|++|++|+++|+.++++|+|.+|.|+++.. ..+|+...+..+++|++||+
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-~~~g~~~~~~~~~~G~~~G~ 83 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRR-APDGRENLLTIMGPSDMFGE 83 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEE-CTTSCEEEEEEECTTCEESC
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEE-CCCCcEEEEEEecCCCEEee
Confidence 45688999999999999999999999999999999999999999999999999999954 45677788999999999999
Q ss_pred HhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhh
Q psy18137 266 IALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYN 313 (320)
Q Consensus 266 ~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~ 313 (320)
.+++.+.++.++++|.++|+++.|++++|..++..+|++....+....
T Consensus 84 ~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~ 131 (227)
T 3d0s_A 84 LSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLA 131 (227)
T ss_dssp HHHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988766655443
No 35
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.77 E-value=1.5e-18 Score=144.95 Aligned_cols=126 Identities=23% Similarity=0.464 Sum_probs=114.6
Q ss_pred HHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CE--EEEecCCCCeeeh
Q psy18137 67 LSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NE--LVTSVGEGGSFGE 141 (320)
Q Consensus 67 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~--~~~~~~~G~~fGe 141 (320)
+.++|+++|+|..++++.+..++..++.+.|++|++|+++|++++++|||++|.|+++.. ++ .+..+++|++||+
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~ 83 (227)
T 3d0s_A 4 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGE 83 (227)
T ss_dssp CHHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESC
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEee
Confidence 357899999999999999999999999999999999999999999999999999999873 32 7889999999999
Q ss_pred hhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 142 LALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 142 ~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
.+++.+.++.++++|.++|.++.|+++.|..++..+|.....+...+.+++
T Consensus 84 ~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 134 (227)
T 3d0s_A 84 LSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRL 134 (227)
T ss_dssp HHHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988777665554443
No 36
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.77 E-value=3.2e-18 Score=131.41 Aligned_cols=124 Identities=25% Similarity=0.399 Sum_probs=112.3
Q ss_pred HHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeec
Q psy18137 185 YEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFG 264 (320)
Q Consensus 185 ~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 264 (320)
...+++++++|..+++..+..++..++...|++|++|+++|+.++.+|+|.+|.|+++... ...+++|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--------~~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--------PVELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--------CEEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--------cceECCCCEee
Confidence 4467899999999999999999999999999999999999999999999999999997432 24789999999
Q ss_pred HHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhhcc
Q psy18137 265 EIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNSFV 316 (320)
Q Consensus 265 e~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~~~ 316 (320)
+.+++.+.++.++++|.++|+++.|++++|.+++..+|++....+....+.+
T Consensus 81 ~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~ 132 (138)
T 1vp6_A 81 EMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 132 (138)
T ss_dssp HHHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred ehHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999887777655543
No 37
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.77 E-value=3.2e-18 Score=143.84 Aligned_cols=127 Identities=16% Similarity=0.220 Sum_probs=115.8
Q ss_pred HHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---C--EEEEecCCCCeee
Q psy18137 66 ALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---N--ELVTSVGEGGSFG 140 (320)
Q Consensus 66 ~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~--~~~~~~~~G~~fG 140 (320)
...++|+++|+|..|+++++..++..++.+.|++|++|+++|++++++|||++|.|+++.. | ..+..+++|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence 4568999999999999999999999999999999999999999999999999999999873 2 2788899999999
Q ss_pred hhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 141 ELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 141 e~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
+.+++.+.++.++++|.++|+++.|+++.|..++.++|.....+...+.+++
T Consensus 88 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 139 (237)
T 3fx3_A 88 EAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHL 139 (237)
T ss_dssp HHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988877665554443
No 38
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.77 E-value=6.3e-19 Score=153.48 Aligned_cols=135 Identities=28% Similarity=0.393 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcC------EEEEecC
Q psy18137 61 YKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN------ELVTSVG 134 (320)
Q Consensus 61 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~------~~~~~~~ 134 (320)
......+..++++.++|..++++.+..++..+..+.|++|++|+++|+.++.+|||.+|.|+++... ..+..++
T Consensus 149 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~ 228 (299)
T 3shr_A 149 LIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLG 228 (299)
T ss_dssp HHHHHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEE
T ss_pred HHHHHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcC
Confidence 3445677889999999999999999999999999999999999999999999999999999999854 3788999
Q ss_pred CCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhhhhc
Q psy18137 135 EGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSIL 195 (320)
Q Consensus 135 ~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (320)
+|++||+.+++.+.++.++++|.++|.++.|+++.|.+++..+|.....++..+.+++..+
T Consensus 229 ~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~ 289 (299)
T 3shr_A 229 KGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYE 289 (299)
T ss_dssp TTCEECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCEeChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcc
Confidence 9999999999999999999999999999999999999999999999888877777666544
No 39
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.77 E-value=3e-18 Score=139.54 Aligned_cols=127 Identities=10% Similarity=0.088 Sum_probs=113.8
Q ss_pred HHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeec
Q psy18137 185 YEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFG 264 (320)
Q Consensus 185 ~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 264 (320)
...+++.++.|..+++.++..++..+..+.|++|++|+++|+.++++|+|.+|.|+++.. ..+|++..+..+++|++||
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~-~~~G~e~~~~~~~~g~~~g 83 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFI-DEKGIEQTTQFAIENWWLS 83 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE-CTTSCEEEEEEEETTCEEC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEE-CCCCCEEEEEEccCCcEEe
Confidence 356788899999999999999999999999999999999999999999999999999954 4567778899999999999
Q ss_pred HH-hHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhh
Q psy18137 265 EI-ALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQY 312 (320)
Q Consensus 265 e~-~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~ 312 (320)
+. +++.+.|+.++++|.++|+++.|++++|.+++..+|++....+...
T Consensus 84 e~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~ 132 (194)
T 3dn7_A 84 DYMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVY 132 (194)
T ss_dssp CHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHH
T ss_pred ehHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHH
Confidence 86 7788899999999999999999999999999999887765544433
No 40
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.77 E-value=4.8e-18 Score=140.61 Aligned_cols=124 Identities=18% Similarity=0.271 Sum_probs=111.7
Q ss_pred hhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhH
Q psy18137 189 LSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIAL 268 (320)
Q Consensus 189 l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l 268 (320)
++++++|..+++..+..++..++...|++|++|+++|+.++++|+|.+|.|+++.. ..+|+...+..+++|++||+.++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-~~~g~~~~~~~~~~g~~~G~~~~ 79 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRT-HLGGQERTLALLGPGELFGEMSL 79 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEE-CSSSCEEEEEEECTTCEECHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEE-CCCCCEEEEEEecCCCEEeehhh
Confidence 46789999999999999999999999999999999999999999999999999954 45677788999999999999999
Q ss_pred hcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhh
Q psy18137 269 LLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYN 313 (320)
Q Consensus 269 l~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~ 313 (320)
+.+.++.++++|.++|+++.|++++|..++..+|++....+....
T Consensus 80 ~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~ 124 (216)
T 4ev0_A 80 LDEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLA 124 (216)
T ss_dssp HHCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999988876655443
No 41
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.77 E-value=5.6e-18 Score=142.01 Aligned_cols=128 Identities=16% Similarity=0.191 Sum_probs=115.8
Q ss_pred HHHHHHHhcCccCCCCCHHHHHHHHhc--ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc-----CEEEEecCCCC
Q psy18137 65 AALSKAIAKNVLFSHLDENTRSDIFDA--MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN-----NELVTSVGEGG 137 (320)
Q Consensus 65 ~~i~~~l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~-----~~~~~~~~~G~ 137 (320)
..+..+|+++|+|..|+++++..++.. ++.+.|++|++|+++|+.++++|||++|.|+++.. ...+..+++|+
T Consensus 14 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~ 93 (232)
T 1zyb_A 14 ETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPY 93 (232)
T ss_dssp HHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSE
T ss_pred HHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCC
Confidence 456688999999999999999999998 99999999999999999999999999999999862 23788999999
Q ss_pred eeehhhhhcCCC-cceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 138 SFGELALIYGTP-RAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 138 ~fGe~~ll~~~~-~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
+||+.+++.+.+ +.++++|.++|+++.|+++.|.+++..+|.....+...+.+++
T Consensus 94 ~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 149 (232)
T 1zyb_A 94 LIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRA 149 (232)
T ss_dssp EECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHH
T ss_pred eeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999999988 9999999999999999999999999999988877666554443
No 42
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.76 E-value=5.7e-18 Score=137.84 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=111.7
Q ss_pred HHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CE--EEEecCCCCeeehh
Q psy18137 68 SKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NE--LVTSVGEGGSFGEL 142 (320)
Q Consensus 68 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~--~~~~~~~G~~fGe~ 142 (320)
..+++.+++|.+|+++++..+...++.+.|++|++|+++|++++++|||.+|.|+++.. |+ .+..+++|++||+.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 46788899999999999999999999999999999999999999999999999999872 32 77889999999987
Q ss_pred -hhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 143 -ALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 143 -~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
+++.+.++.++++|.++|.++.|+++.|.+++.++|.....+...+.+++
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l 136 (194)
T 3dn7_A 86 MAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSF 136 (194)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999988776555444443
No 43
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.76 E-value=7.1e-18 Score=141.71 Aligned_cols=129 Identities=13% Similarity=0.161 Sum_probs=117.6
Q ss_pred HHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 184 LYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 184 ~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
....+++++++|..+++..+..++..+....|++|++|+++|+.++++|+|.+|.|+++.. ..+|+...+..+++|++|
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-~~~G~~~~~~~~~~G~~~ 86 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRM-TPTGSEAVVSVFTRGESF 86 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEE-CTTSCEEEEEEEETTEEE
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEE-CCCCCEEEEEEeCCCCEe
Confidence 3456789999999999999999999999999999999999999999999999999999954 566777889999999999
Q ss_pred cHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhh
Q psy18137 264 GEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYN 313 (320)
Q Consensus 264 Ge~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~ 313 (320)
|+.+++.+.++.++++|.++|+++.|++++|..++..+|++....+....
T Consensus 87 G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~ 136 (237)
T 3fx3_A 87 GEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTF 136 (237)
T ss_dssp CHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred chHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776655443
No 44
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.76 E-value=7.6e-18 Score=155.77 Aligned_cols=133 Identities=23% Similarity=0.455 Sum_probs=121.1
Q ss_pred ccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeE-EeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCE-E
Q psy18137 52 YVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPV-NCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE-L 129 (320)
Q Consensus 52 ~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~-~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~-~ 129 (320)
+.+++..++.++.+.+.++|+++++|..|+++.+..++..+... .|++|++|+++|+.++++|||++|.|+++..+. .
T Consensus 320 l~~~~~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~ 399 (469)
T 1o7f_A 320 LRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV 399 (469)
T ss_dssp TTSCTTSCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEE
T ss_pred HcCCchhcCHHHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCee
Confidence 45667788999999999999999999999999999999999854 999999999999999999999999999998765 8
Q ss_pred EEecCCCCeeehhhhhcCCCcceEEeeec-eEEEEEEchhhHHHHhhhhhHHHhhH
Q psy18137 130 VTSVGEGGSFGELALIYGTPRAATVRAKT-DVKLWGLDRDSYRRILMGSTIRKRKL 184 (320)
Q Consensus 130 ~~~~~~G~~fGe~~ll~~~~~~~tv~a~~-~~~~~~i~~~~~~~~~~~~~~~~~~~ 184 (320)
+..+.+|++||+.+++.+.++.++++|.+ +|+++.|+++.|..++..+|.....+
T Consensus 400 ~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l 455 (469)
T 1o7f_A 400 VCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 455 (469)
T ss_dssp EEEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC----
T ss_pred EEEecCCCEEEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHH
Confidence 99999999999999999999999999998 69999999999999999998876554
No 45
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.76 E-value=1.2e-17 Score=139.68 Aligned_cols=128 Identities=15% Similarity=0.260 Sum_probs=102.1
Q ss_pred HHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CE--EEEecCCCCee
Q psy18137 65 AALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NE--LVTSVGEGGSF 139 (320)
Q Consensus 65 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~--~~~~~~~G~~f 139 (320)
..+...|++.++|..|+++++..++..++.+.|++|++|+++|++++++|+|++|.|+++.. |+ .+..+++|++|
T Consensus 7 ~~~~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~ 86 (230)
T 3iwz_A 7 TVVTTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFV 86 (230)
T ss_dssp ---------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEE
T ss_pred eeehhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEE
Confidence 34567899999999999999999999999999999999999999999999999999999872 22 78889999999
Q ss_pred ehhhhhcCC-CcceEEeeeceEEEEEEchhhHHHHhhhh-----hHHHhhHHHHHhhhh
Q psy18137 140 GELALIYGT-PRAATVRAKTDVKLWGLDRDSYRRILMGS-----TIRKRKLYEEFLSRV 192 (320)
Q Consensus 140 Ge~~ll~~~-~~~~tv~a~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~l~~~ 192 (320)
|+.+++.+. ++.+++.|.++|.++.|+++.|.+++.++ |.....+...+.+++
T Consensus 87 G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l 145 (230)
T 3iwz_A 87 GEMGLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRL 145 (230)
T ss_dssp SCGGGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHH
T ss_pred EehhhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH
Confidence 999999875 78999999999999999999999999999 888776665555444
No 46
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.75 E-value=1.2e-17 Score=139.90 Aligned_cols=129 Identities=14% Similarity=0.165 Sum_probs=116.5
Q ss_pred HHHHHhhhhhhcccCcHHHHhhhhcc--cceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCC
Q psy18137 184 LYEEFLSRVSILESLEKWERLTVADS--LEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSD 261 (320)
Q Consensus 184 ~~~~~l~~~~~~~~l~~~~~~~l~~~--~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~ 261 (320)
....+++++++|..+++.++..++.. +....|++|++|+++|+.++.+|+|.+|.|+++.. ..+|+...+..+++|+
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~-~~~G~~~~l~~~~~G~ 93 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTN-AKENIYTVIEQIEAPY 93 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE-CGGGSCEEEEEEESSE
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEE-CCCCCEEEEEEccCCC
Confidence 34567899999999999999999998 99999999999999999999999999999999854 4556778899999999
Q ss_pred eecHHhHhcCCC-ceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhh
Q psy18137 262 YFGEIALLLDRP-RAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYN 313 (320)
Q Consensus 262 ~fGe~~ll~~~~-~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~ 313 (320)
+||+.+++.+.+ +.++++|.++|+++.|++++|..++..+|++....+....
T Consensus 94 ~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~ 146 (232)
T 1zyb_A 94 LIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVS 146 (232)
T ss_dssp EECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHH
T ss_pred eeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHH
Confidence 999999999988 9999999999999999999999999999988776655443
No 47
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.75 E-value=6.6e-18 Score=138.53 Aligned_cols=126 Identities=24% Similarity=0.292 Sum_probs=111.6
Q ss_pred hHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCe
Q psy18137 183 KLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDY 262 (320)
Q Consensus 183 ~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~ 262 (320)
..+..+++++++|..+++..+..++..++...|.+|++|+++|+.++.+|+|.+|.|+++. .++.. ..+++|++
T Consensus 68 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~---~~g~~---~~l~~G~~ 141 (202)
T 3bpz_A 68 FNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT---KGNKE---MKLSDGSY 141 (202)
T ss_dssp HHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC---TTSCC---EEEETTCE
T ss_pred HHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE---CCCeE---EEEcCCCE
Confidence 3455788999999999999999999999999999999999999999999999999999973 23333 36899999
Q ss_pred ecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhh
Q psy18137 263 FGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNS 314 (320)
Q Consensus 263 fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~ 314 (320)
||+.+++.+.+++++++|.++|+++.|++++|..++..+|++..........
T Consensus 142 fGe~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~ 193 (202)
T 3bpz_A 142 FGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID 193 (202)
T ss_dssp ECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred eccHHHhcCCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887666554433
No 48
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.75 E-value=1.1e-17 Score=138.92 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=111.2
Q ss_pred HHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CE--EEEecCCCCe--eeh
Q psy18137 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NE--LVTSVGEGGS--FGE 141 (320)
Q Consensus 69 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~--~~~~~~~G~~--fGe 141 (320)
++|+++|+|..|+++++..+...++.+.|++|++|+++|+.++++|||.+|.|+++.. |+ .+..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 6789999999999999999999999999999999999999999999999999999862 32 7788999999 799
Q ss_pred hhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 142 LALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 142 ~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
.+++.+.++.++++|.++|+++.|+++.|.+++.++|.....+...+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 133 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRF 133 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988776655444443
No 49
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.75 E-value=2.7e-18 Score=143.24 Aligned_cols=126 Identities=22% Similarity=0.342 Sum_probs=114.5
Q ss_pred HHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcC-----EEEEecCCCCeeeh
Q psy18137 67 LSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN-----ELVTSVGEGGSFGE 141 (320)
Q Consensus 67 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~-----~~~~~~~~G~~fGe 141 (320)
+.++|+++|+|..|+++++..++..++.+.|++|++|+++|++++++|+|.+|.|+++... ..+..+++|++||+
T Consensus 7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~ 86 (227)
T 3dkw_A 7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE 86 (227)
T ss_dssp SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESC
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeee
Confidence 4578999999999999999999999999999999999999999999999999999998632 27788999999999
Q ss_pred hhhhcCCC-cceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 142 LALIYGTP-RAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 142 ~~ll~~~~-~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
.+++.+.+ +.++++|.++|.++.|+++.|..++..+|.....+...+..++
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 138 (227)
T 3dkw_A 87 AMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL 138 (227)
T ss_dssp TTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999988877665555444
No 50
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.75 E-value=5.5e-18 Score=141.85 Aligned_cols=128 Identities=20% Similarity=0.267 Sum_probs=115.6
Q ss_pred HHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecH
Q psy18137 186 EEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGE 265 (320)
Q Consensus 186 ~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 265 (320)
..+++++++|..+++..+..++..++...|++|++|+.+|+.++++|+|.+|.|+++.. ..+|+...+..+++|++||+
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-~~~g~~~~~~~~~~g~~~G~ 83 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRV-SLGGRERVLGDIYAPGVVGE 83 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEE-CC--CEEEEEEEESSEEEST
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEE-CCCCceEEEEecCCCCEEee
Confidence 45789999999999999999999999999999999999999999999999999999854 55677788999999999999
Q ss_pred HhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhh
Q psy18137 266 IALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNS 314 (320)
Q Consensus 266 ~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~ 314 (320)
.+++.+.++.++++|.++|+++.|++++|..++..+|++....+....+
T Consensus 84 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (231)
T 3e97_A 84 TAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLAR 132 (231)
T ss_dssp TTTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888766654443
No 51
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=153.42 Aligned_cols=131 Identities=31% Similarity=0.481 Sum_probs=117.9
Q ss_pred HHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcC------EEEEecCC
Q psy18137 62 KTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN------ELVTSVGE 135 (320)
Q Consensus 62 ~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~------~~~~~~~~ 135 (320)
.....+..+++++++|..++...+..++..+..+.|++|++|+++|+.++++|||.+|.|+++... ..+..+++
T Consensus 241 ~~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~ 320 (381)
T 4din_B 241 RKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGP 320 (381)
T ss_dssp HHHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECT
T ss_pred HHHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCC
Confidence 345567789999999999999999999999999999999999999999999999999999998742 26889999
Q ss_pred CCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 136 GGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 136 G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
|++||+.+++.+.+|.++++|.++|.++.|+++.|.+++...+......+..+-..+
T Consensus 321 Gd~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l 377 (381)
T 4din_B 321 SDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377 (381)
T ss_dssp TCEECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred CCEechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888766655554433
No 52
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.75 E-value=1.1e-18 Score=133.94 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=101.2
Q ss_pred HHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc--CE--EEE--ecCCCCeeehh
Q psy18137 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN--NE--LVT--SVGEGGSFGEL 142 (320)
Q Consensus 69 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~--~~--~~~--~~~~G~~fGe~ 142 (320)
++|+++++|..|+++.+..++..++.+.|++|++|+++|+.++.+|||++|.|+++.. ++ .+. .+.+|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 4688999999999999999999999999999999999999999999999999997632 22 334 99999999999
Q ss_pred hh---hcCCC------cceEEeeeceEEEEEEchhhHHHHhhhhhHHHh
Q psy18137 143 AL---IYGTP------RAATVRAKTDVKLWGLDRDSYRRILMGSTIRKR 182 (320)
Q Consensus 143 ~l---l~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 182 (320)
++ +.+.+ +.++++|.++|+++.|+++.|.+++.++|....
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 96 77774 578999999999999999999999998886643
No 53
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.75 E-value=2.1e-17 Score=143.14 Aligned_cols=125 Identities=30% Similarity=0.482 Sum_probs=114.3
Q ss_pred HHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---C---EEEEecCCCC
Q psy18137 64 MAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---N---ELVTSVGEGG 137 (320)
Q Consensus 64 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~---~~~~~~~~G~ 137 (320)
...+..+++++++|..++...+..++..+..+.|++|++|+++|+.++.+|||.+|.|+++.. + ..+..+++|+
T Consensus 152 ~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~ 231 (291)
T 2qcs_B 152 RKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSD 231 (291)
T ss_dssp HHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTC
T ss_pred HHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCC
Confidence 456678899999999999999999999999999999999999999999999999999999862 2 3788999999
Q ss_pred eeehhhhhcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHH
Q psy18137 138 SFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEF 188 (320)
Q Consensus 138 ~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 188 (320)
+||+.+++.+.++.++++|.++|.++.|+++.|..++..+|......+..+
T Consensus 232 ~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 232 YFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp EECSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred EecHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998766655444
No 54
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.74 E-value=1.8e-17 Score=137.50 Aligned_cols=126 Identities=10% Similarity=0.096 Sum_probs=114.0
Q ss_pred HHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCe--ec
Q psy18137 187 EFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDY--FG 264 (320)
Q Consensus 187 ~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~--fG 264 (320)
.+++++++|..+++..+..++..+....|++|++|+++|+.++++|+|.+|.|+++.. ..+|+...+..+++|++ ||
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-~~~G~~~~~~~~~~G~~~~~g 81 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYIL-SDEGREITLYRLFDMDMCLLS 81 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEE-CTTSCEEEEEEECTTCEESGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEE-CCCCCEEEEEecCCCCeeehh
Confidence 4688999999999999999999999999999999999999999999999999999954 55677788999999999 79
Q ss_pred HHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhh
Q psy18137 265 EIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYN 313 (320)
Q Consensus 265 e~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~ 313 (320)
+.+++.+.|+.++++|.++|+++.|++++|..++..+|++....+....
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~ 130 (220)
T 3dv8_A 82 ASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMA 130 (220)
T ss_dssp GGGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988776655443
No 55
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.73 E-value=1.5e-17 Score=137.43 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=110.9
Q ss_pred hhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHh
Q psy18137 190 SRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALL 269 (320)
Q Consensus 190 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll 269 (320)
.++++|..+++..+..++..++...|.+|++|+++|+.++.+|+|.+|.|+++.. + ..+..+++|++||+.+++
T Consensus 78 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~----~--~~~~~l~~G~~fGe~~~~ 151 (212)
T 3ukn_A 78 LQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD----N--TVLAILGKGDLIGSDSLT 151 (212)
T ss_dssp GGSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS----S--CEEEEECTTCEEECSCCS
T ss_pred HhcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC----C--eEEEEecCCCCcCcHHhc
Confidence 3789999999999999999999999999999999999999999999999999841 2 568999999999999999
Q ss_pred cCC--CceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhhcc
Q psy18137 270 LDR--PRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNSFV 316 (320)
Q Consensus 270 ~~~--~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~~~ 316 (320)
.+. +++++++|.++|+++.|++++|..++..+|++....+......+
T Consensus 152 ~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l 200 (212)
T 3ukn_A 152 KEQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL 200 (212)
T ss_dssp SSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred cCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 988 99999999999999999999999999999999988777665443
No 56
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.73 E-value=4.3e-17 Score=136.19 Aligned_cols=128 Identities=13% Similarity=0.310 Sum_probs=105.2
Q ss_pred HHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeec
Q psy18137 185 YEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFG 264 (320)
Q Consensus 185 ~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 264 (320)
....++..++|..+++.++..++..++...|++|++|+.+|+.++++|+|.+|.|+++.. ..+|+...+..+++|++||
T Consensus 9 ~~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-~~~G~~~~~~~~~~g~~~G 87 (230)
T 3iwz_A 9 VTTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAE-EDDDRELVLGYFGSGEFVG 87 (230)
T ss_dssp -------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEE-CTTSCEEEEEEECTTCEES
T ss_pred ehhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEE-CCCCCEEEEEEecCCCEEE
Confidence 345688899999999999999999999999999999999999999999999999999954 5567778899999999999
Q ss_pred HHhHhcCC-CceeEEEEecCeEEEEEehHHHHHhhcCH-----HHHHHHHHHhhh
Q psy18137 265 EIALLLDR-PRAATVVAKGPLKCVKLDRARFERVLGPC-----ADILKRNITQYN 313 (320)
Q Consensus 265 e~~ll~~~-~~~~tv~a~~~~~v~~i~~~~f~~ll~~~-----~~~~~~~~~~~~ 313 (320)
+.+++.+. ++.++++|.++|+++.|++++|.+++..+ |++....+....
T Consensus 88 ~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~ 142 (230)
T 3iwz_A 88 EMGLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLS 142 (230)
T ss_dssp CGGGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHH
T ss_pred ehhhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHH
Confidence 99999875 79999999999999999999999999999 988766655443
No 57
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.73 E-value=2.2e-17 Score=165.78 Aligned_cols=126 Identities=25% Similarity=0.439 Sum_probs=115.6
Q ss_pred cccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcceeEEe-CCCCeEEecCCCCCeEEEEEeeEEEEEEcC-E
Q psy18137 51 SYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNC-LPGESIITQGDEGDNFYVIDQGEVEVYVNN-E 128 (320)
Q Consensus 51 ~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~-~ 128 (320)
.+.+.+..++.++.+.+.++|+++++|+.|+...++.++..+..+.+ ++|++|++|||.++.||||++|.|.|+..+ .
T Consensus 319 ~l~k~~~~rt~ed~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~ 398 (999)
T 4f7z_A 319 ILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG 398 (999)
T ss_dssp HHTSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTE
T ss_pred hhcCCcccccHHHHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCc
Confidence 34566778889999999999999999999999999999999997654 789999999999999999999999999865 4
Q ss_pred EEEecCCCCeeehhhhhcCCCcceEEeeece-EEEEEEchhhHHHHhhh
Q psy18137 129 LVTSVGEGGSFGELALIYGTPRAATVRAKTD-VKLWGLDRDSYRRILMG 176 (320)
Q Consensus 129 ~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~-~~~~~i~~~~~~~~~~~ 176 (320)
.+..+++||+||+++++.+.||.+||+|.++ |++|+|++++|.+++..
T Consensus 399 ~v~~L~~Gd~FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 399 VVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp EEEEEETTCEECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred ceEEecCCCcccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 7899999999999999999999999999985 99999999999999954
No 58
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.73 E-value=6.5e-18 Score=140.92 Aligned_cols=128 Identities=18% Similarity=0.299 Sum_probs=116.1
Q ss_pred HHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeec
Q psy18137 185 YEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFG 264 (320)
Q Consensus 185 ~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 264 (320)
...+++++++|..+++..+..++..+....|++|++|+++|+.++++|+|.+|.|+++. ...+|+...+..+++|++||
T Consensus 7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~~~G~~~~~~~~~~g~~~G 85 (227)
T 3dkw_A 7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYR-LTPEGQEKILEVTNERNTFA 85 (227)
T ss_dssp SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCB-CCGGGCCBCCCEECTTEEES
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEE-ECCCCCEEEEEEcCCCCEee
Confidence 45678999999999999999999999999999999999999999999999999999984 34556667789999999999
Q ss_pred HHhHhcCCC-ceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhh
Q psy18137 265 EIALLLDRP-RAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYN 313 (320)
Q Consensus 265 e~~ll~~~~-~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~ 313 (320)
+.+++.+.+ +.++++|.++|+++.|++++|..++..+|++....+....
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~ 135 (227)
T 3dkw_A 86 EAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLS 135 (227)
T ss_dssp CTTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHH
T ss_pred eHHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999988876655443
No 59
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.73 E-value=3.1e-17 Score=144.93 Aligned_cols=126 Identities=25% Similarity=0.351 Sum_probs=114.1
Q ss_pred HHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecH
Q psy18137 186 EEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGE 265 (320)
Q Consensus 186 ~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 265 (320)
..+++++++|..+++.++..++..++.+.|++|++|+++|+.++++|+|.+|.|++++... +++. .+..+++|++||+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~-~g~~-~~~~~~~G~~fGe 89 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGD-DGVA-IIARALPGMIVGE 89 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECT-TCCE-EEEEECTTCEESH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECC-CCcE-EEEEecCCCEeeH
Confidence 4678999999999999999999999999999999999999999999999999999996543 4444 7899999999999
Q ss_pred HhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhh
Q psy18137 266 IALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNS 314 (320)
Q Consensus 266 ~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~ 314 (320)
.+++.+.+++++++|.++|+++.|++++|.+++ .+|.+....+....+
T Consensus 90 ~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~ 137 (333)
T 4ava_A 90 IALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQ 137 (333)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHH
T ss_pred HHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 888888776655444
No 60
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.73 E-value=2.8e-17 Score=137.59 Aligned_cols=120 Identities=18% Similarity=0.308 Sum_probs=108.6
Q ss_pred cCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---C--EEEEecCCCCeeehhhhhcC
Q psy18137 73 KNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---N--ELVTSVGEGGSFGELALIYG 147 (320)
Q Consensus 73 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~--~~~~~~~~G~~fGe~~ll~~ 147 (320)
.+|+|..|+++.+..++..++.+.|++|++|+++|++++++|||++|.|+++.. + ..+..+++|++||+.+++.+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~ 93 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAE 93 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHT
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCC
Confidence 468999999999999999999999999999999999999999999999999852 2 37899999999999999999
Q ss_pred CCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 148 TPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 148 ~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
.++.++++|.++|+++.|+++.|..++.++|.....+...+.+++
T Consensus 94 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 138 (232)
T 2gau_A 94 ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKEL 138 (232)
T ss_dssp SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988877666554443
No 61
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.73 E-value=3.2e-17 Score=137.28 Aligned_cols=123 Identities=13% Similarity=0.208 Sum_probs=109.0
Q ss_pred hhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhc
Q psy18137 191 RVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLL 270 (320)
Q Consensus 191 ~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~ 270 (320)
.+++|..+++..+..++..+....|++|++|+++|+.++++|+|.+|.|+++.. ..+|+...+..+++|++||+.+++.
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~-~~~g~~~~~~~~~~G~~~G~~~~~~ 92 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILRE-GVYGRFHISRIVKPGQFFGMRPYFA 92 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC------CCCEEEEECTTCEESHHHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEE-CCCCCEEEEEEeCCCCEeeeehhhC
Confidence 568899999999999999999999999999999999999999999999999844 4456677899999999999999999
Q ss_pred CCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhh
Q psy18137 271 DRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNS 314 (320)
Q Consensus 271 ~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~ 314 (320)
+.++.++++|.++|+++.|++++|..++..+|++....+.....
T Consensus 93 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (232)
T 2gau_A 93 EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 136 (232)
T ss_dssp TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887766655433
No 62
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.72 E-value=2.8e-17 Score=149.32 Aligned_cols=125 Identities=26% Similarity=0.396 Sum_probs=114.5
Q ss_pred HHhhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCC
Q psy18137 180 RKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGP 259 (320)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~ 259 (320)
.....+..+++++++|..++...+..++..+....|.+|++|+++|+.++++|+|.+|.|+++. ..+|....+..+.+
T Consensus 138 ~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~--~~~G~~~~v~~l~~ 215 (416)
T 3tnp_B 138 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV--KCDGVGRCVGNYDN 215 (416)
T ss_dssp HHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE--ECSSCEEEEEEEES
T ss_pred HHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE--ecCCCEEEEEEecC
Confidence 3345677889999999999999999999999999999999999999999999999999999997 34566678999999
Q ss_pred CCeecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHH
Q psy18137 260 SDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILK 306 (320)
Q Consensus 260 G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~ 306 (320)
|++||+.+++.+.++.++|+|.++|.+|.|+++.|..++..++....
T Consensus 216 G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 216 RGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp CCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred CCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 99999999999999999999999999999999999999988887653
No 63
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.72 E-value=3.8e-18 Score=130.87 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=101.9
Q ss_pred HHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEE--EeCCCCeec
Q psy18137 187 EFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVG--KLGPSDYFG 264 (320)
Q Consensus 187 ~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~--~l~~G~~fG 264 (320)
.+++++++|..+++..+..++..+....|++|++|+++|+.++.+|+|.+|.|++. ...+++...+. .+++|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~--~~~~g~~~~~~~~~l~~G~~fG 83 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV--TTDGGRSGFYNRSLLKEGDFCG 83 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE--CCSSCSSSSSCEEECCTTCBSS
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE--EcCCCcceeeeeeeecCCCEec
Confidence 35788999999999999999999999999999999999999999999999999965 33444444344 999999999
Q ss_pred HHhH---hcCCC------ceeEEEEecCeEEEEEehHHHHHhhcCHHHHH
Q psy18137 265 EIAL---LLDRP------RAATVVAKGPLKCVKLDRARFERVLGPCADIL 305 (320)
Q Consensus 265 e~~l---l~~~~------~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~ 305 (320)
+.++ +.+.+ ++++++|.++|+++.|++++|.+++..+|++.
T Consensus 84 e~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~ 133 (137)
T 1wgp_A 84 DELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSG 133 (137)
T ss_dssp THHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCT
T ss_pred HHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhH
Confidence 9995 77764 57899999999999999999999998887654
No 64
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.69 E-value=4.6e-17 Score=124.40 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=102.6
Q ss_pred HHHHHhhhhhhcccCcHHHHhhhhcccceeEeC-CCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCe
Q psy18137 184 LYEEFLSRVSILESLEKWERLTVADSLEPVSFQ-DKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDY 262 (320)
Q Consensus 184 ~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~-~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~ 262 (320)
....+++++++|..+++..+..++..+....|. +|++|+++|+.++.+|+|.+|.|+++. .+++. ..+++|++
T Consensus 13 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~~g~~---~~l~~G~~ 86 (134)
T 2d93_A 13 QLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH---PDGKV---ENLFMGNS 86 (134)
T ss_dssp HHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC---SSSCE---EEECTTCE
T ss_pred HHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc---CCCcE---EEecCCCc
Confidence 455678899999999999999999999999999 999999999999999999999999983 33432 56899999
Q ss_pred ecHHhHhcCCCceeEE-EEecCeEEEEEehHHHHHhhcCHHH
Q psy18137 263 FGEIALLLDRPRAATV-VAKGPLKCVKLDRARFERVLGPCAD 303 (320)
Q Consensus 263 fGe~~ll~~~~~~~tv-~a~~~~~v~~i~~~~f~~ll~~~~~ 303 (320)
||+.+++.+.++.+++ +|.++|.++.|++++|..++..+++
T Consensus 87 fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 87 FGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp ESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred cChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 9999999999998899 9999999999999999999887653
No 65
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.69 E-value=1.5e-16 Score=130.88 Aligned_cols=118 Identities=23% Similarity=0.323 Sum_probs=104.2
Q ss_pred hcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCC-
Q psy18137 194 ILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDR- 272 (320)
Q Consensus 194 ~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~- 272 (320)
+.+.+++..+..++..+....|++|++|+++|+.++++|+|.+|.|+++.. ..+|+...+..+++|++||+.+++.+.
T Consensus 3 l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 3 LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIK-DEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp ----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE-CTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred CCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEE-CCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 456688899999999999999999999999999999999999999999954 466777889999999999999999987
Q ss_pred CceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhh
Q psy18137 273 PRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQY 312 (320)
Q Consensus 273 ~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~ 312 (320)
++.++++|.++|+++.|++++|..++..+|++....+...
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 121 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 121 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHH
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHH
Confidence 8999999999999999999999999999988876655443
No 66
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.69 E-value=1.6e-16 Score=152.36 Aligned_cols=131 Identities=23% Similarity=0.455 Sum_probs=121.6
Q ss_pred ccccccccCCCHHHHHHHHHHHhcCccCCCCCHHHHHHHHhcce-eEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCE
Q psy18137 50 TSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMF-PVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE 128 (320)
Q Consensus 50 ~~~~~~~~~k~~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~-~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~ 128 (320)
..+.+.+..|+.++.+.+.++|+++++|.+|+++.+..++..+. .+.|++|++|+++|+.++++|||++|.|+++..++
T Consensus 13 ~iL~k~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g~ 92 (694)
T 3cf6_E 13 MILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK 92 (694)
T ss_dssp HHHHSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETTT
T ss_pred HHHcCChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeCC
Confidence 44567888899999999999999999999999999999999998 68999999999999999999999999999998764
Q ss_pred -EEEecCCCCeeehhhhhcCCCcceEEeeec-eEEEEEEchhhHHHHhhhhhHH
Q psy18137 129 -LVTSVGEGGSFGELALIYGTPRAATVRAKT-DVKLWGLDRDSYRRILMGSTIR 180 (320)
Q Consensus 129 -~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~-~~~~~~i~~~~~~~~~~~~~~~ 180 (320)
.+..+++|++||+.+++.+.++.++++|.+ +|+++.|+++.|.+++..+|..
T Consensus 93 ~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 93 GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp EEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred EEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 889999999999999999999999999999 5999999999999999877654
No 67
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.69 E-value=2.8e-16 Score=129.38 Aligned_cols=118 Identities=22% Similarity=0.319 Sum_probs=102.9
Q ss_pred ccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CE--EEEecCCCCeeehhhhhcCC-
Q psy18137 75 VLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NE--LVTSVGEGGSFGELALIYGT- 148 (320)
Q Consensus 75 ~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~--~~~~~~~G~~fGe~~ll~~~- 148 (320)
++++.++++++..++..++.+.|++|++|+++|++++++|+|.+|.|+++.. ++ .+..+++|++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 4677799999999999999999999999999999999999999999999863 22 78889999999999999988
Q ss_pred CcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 149 PRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 149 ~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
++.++++|.++|.++.|+++.|..++.++|.....+...+..++
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 125 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRL 125 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988777665555444
No 68
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.69 E-value=2.4e-16 Score=129.45 Aligned_cols=114 Identities=20% Similarity=0.324 Sum_probs=101.0
Q ss_pred CcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCC----C
Q psy18137 198 LEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDR----P 273 (320)
Q Consensus 198 l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~----~ 273 (320)
+++.++..++..+....|++|++|+++|+.++++|+|.+|.|+++.. ..+|+...+..+++|++||+.+++.+. +
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~ 79 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIE-DDDGREMIIGYLNSGDFFGELGLFEKEGSEQE 79 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE-CTTSCEEEEEEEETTCEESCTTTCC-----CB
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEE-CCCCCEEEEEEcCCCCCcccHHHhcCCCCCCC
Confidence 46778889999999999999999999999999999999999999854 556777889999999999999999888 8
Q ss_pred ceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhh
Q psy18137 274 RAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQY 312 (320)
Q Consensus 274 ~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~ 312 (320)
+.++++|.++|+++.|++++|..++..+|++....+...
T Consensus 80 ~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 118 (207)
T 2oz6_A 80 RSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQM 118 (207)
T ss_dssp CCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHH
Confidence 999999999999999999999999999998876555443
No 69
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.68 E-value=5.6e-16 Score=127.24 Aligned_cols=113 Identities=19% Similarity=0.322 Sum_probs=100.3
Q ss_pred CCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CE--EEEecCCCCeeehhhhhcCC----Cc
Q psy18137 80 LDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NE--LVTSVGEGGSFGELALIYGT----PR 150 (320)
Q Consensus 80 l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~--~~~~~~~G~~fGe~~ll~~~----~~ 150 (320)
|+++++..++..++.+.|++|++|+++|++++++|||.+|.|+++.. |+ .+..+++|++||+.+++.+. ++
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 68899999999999999999999999999999999999999999863 22 78889999999999999988 89
Q ss_pred ceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 151 AATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 151 ~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
.++++|.++|+++.|+++.|..++.++|.....+...+.+++
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~ 122 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRL 122 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988776665555444
No 70
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.67 E-value=3.7e-16 Score=129.09 Aligned_cols=119 Identities=17% Similarity=0.199 Sum_probs=101.1
Q ss_pred hhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCC
Q psy18137 193 SILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDR 272 (320)
Q Consensus 193 ~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~ 272 (320)
|.+..+++.+...++..+....|++|++|+.+|+.++++|+|.+|.|+++.. ..+|+...+..+++|++||+.+++.+.
T Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~-~~~G~~~~~~~~~~G~~~G~~~~~~~~ 83 (213)
T 1o5l_A 5 KIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHV-SENGKTLEIDEIKPVQIIASGFIFSSE 83 (213)
T ss_dssp --------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEE-CTTSCEEEEEEECSSEESSGGGTTSSS
T ss_pred ccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEE-CCCCCEEEEEEecCCCEeeeHHHhcCC
Confidence 5677788889999999999999999999999999999999999999999854 456777889999999999999999876
Q ss_pred -CceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhh
Q psy18137 273 -PRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQY 312 (320)
Q Consensus 273 -~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~ 312 (320)
++.++++|.++|+++.|+++.|..++..+|++....+...
T Consensus 84 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 124 (213)
T 1o5l_A 84 PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDV 124 (213)
T ss_dssp CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 8999999999999999999999999999998876555543
No 71
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.67 E-value=3.6e-16 Score=133.30 Aligned_cols=116 Identities=23% Similarity=0.333 Sum_probs=102.4
Q ss_pred ccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCC-Cc
Q psy18137 196 ESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDR-PR 274 (320)
Q Consensus 196 ~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~-~~ 274 (320)
..+++..+..++..+....|++|++|+.+|+.++++|+|.+|.|+++.. ..+|+...+..+++|++||+.+++.+. ++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~-~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~ 133 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIK-DEEGKEMILSYLNQGDFIGELGLFEEGQER 133 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEE-CTTCCEEEEEEEETTCEESCTTTTSTTCBC
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEE-CCCCCEEEEEEcCCCCEEeehHHhCCCCCC
Confidence 4478889999999999999999999999999999999999999999954 456777889999999999999999988 89
Q ss_pred eeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhh
Q psy18137 275 AATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQY 312 (320)
Q Consensus 275 ~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~ 312 (320)
.++++|.++|+++.|+++.|.+++..+|++....+...
T Consensus 134 ~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l 171 (260)
T 3kcc_A 134 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 171 (260)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHH
T ss_pred ceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 99999999999999999999999999988876655443
No 72
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.66 E-value=3.7e-16 Score=129.67 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=105.7
Q ss_pred HHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHH
Q psy18137 187 EFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEI 266 (320)
Q Consensus 187 ~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~ 266 (320)
.+++++++|..+++..+..++..+....|++|++|+++|+.++++|+|.+|.|+++ ...+|+...+..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~--~~~~G~~~~~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY--LAYEDKEFTLAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE--EECSSCEEEEEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE--ECCCCCEEEEEEcCCCCEeCC-
Confidence 35788899999999999999999999999999999999999999999999999995 456677788999999999998
Q ss_pred hHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhh
Q psy18137 267 ALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQY 312 (320)
Q Consensus 267 ~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~ 312 (320)
++.++++|.++|+++.|++++|..++..+|++....+...
T Consensus 81 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~ 120 (220)
T 2fmy_A 81 ------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVL 120 (220)
T ss_dssp ------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHH
T ss_pred ------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 7899999999999999999999999999888776555543
No 73
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.65 E-value=1.9e-16 Score=131.44 Aligned_cols=117 Identities=14% Similarity=0.202 Sum_probs=105.0
Q ss_pred HHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc--C--EEEEecCCCCeeehhhh
Q psy18137 69 KAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN--N--ELVTSVGEGGSFGELAL 144 (320)
Q Consensus 69 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~--~--~~~~~~~~G~~fGe~~l 144 (320)
.+|+++|+|..|+++.+..++..++.+.|++|++|+++|+.++++|||.+|.|+++.. | ..+..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~--- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT--- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES---
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC---
Confidence 4688999999999999999999999999999999999999999999999999999642 2 27888999999998
Q ss_pred hcCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 145 IYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 145 l~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
++.++++|.++|+++.|+++.|.+++.++|.....+...+.+++
T Consensus 81 ----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~ 124 (220)
T 2fmy_A 81 ----HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLL 124 (220)
T ss_dssp ----CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred ----ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999988777666554444
No 74
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.65 E-value=1e-15 Score=130.51 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=101.0
Q ss_pred cCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CE--EEEecCCCCeeehhhhhcCC-C
Q psy18137 76 LFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NE--LVTSVGEGGSFGELALIYGT-P 149 (320)
Q Consensus 76 ~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~--~~~~~~~G~~fGe~~ll~~~-~ 149 (320)
++..++++.+..++..++.+.|++|++|+++|++++++|||++|.|+++.. ++ .+..+++|++||+.+++.+. +
T Consensus 53 ~~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~ 132 (260)
T 3kcc_A 53 LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQE 132 (260)
T ss_dssp ------CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCB
T ss_pred HcCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCC
Confidence 335589999999999999999999999999999999999999999999863 22 78889999999999999988 8
Q ss_pred cceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 150 RAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 150 ~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
+.++++|.++|.++.|+++.|..++..+|.....+...+..++
T Consensus 133 ~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l 175 (260)
T 3kcc_A 133 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRL 175 (260)
T ss_dssp CCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred CceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988777665554444
No 75
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.65 E-value=5.8e-16 Score=127.92 Aligned_cols=121 Identities=9% Similarity=0.082 Sum_probs=100.7
Q ss_pred cCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---C--EEEEecCCCCeeehhhhhcC
Q psy18137 73 KNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---N--ELVTSVGEGGSFGELALIYG 147 (320)
Q Consensus 73 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~--~~~~~~~~G~~fGe~~ll~~ 147 (320)
.-|+|..+++.....+...++.+.|++|++|+++|+.++++|||.+|.|+++.. | ..+..+++|++||+.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~ 82 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSS 82 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSS
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcC
Confidence 357899999999999999999999999999999999999999999999999862 3 27888999999999999987
Q ss_pred C-CcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhhh
Q psy18137 148 T-PRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVS 193 (320)
Q Consensus 148 ~-~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (320)
. ++.++++|.++|.++.|+++.|.+++.++|.....+...+.+++.
T Consensus 83 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~ 129 (213)
T 1o5l_A 83 EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFR 129 (213)
T ss_dssp SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 6 899999999999999999999999999999988777666655543
No 76
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.63 E-value=3e-16 Score=130.44 Aligned_cols=116 Identities=13% Similarity=0.135 Sum_probs=103.8
Q ss_pred HHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEE--cCE--EEEecCCCCeeehhhhh
Q psy18137 70 AIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYV--NNE--LVTSVGEGGSFGELALI 145 (320)
Q Consensus 70 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~--~~~--~~~~~~~G~~fGe~~ll 145 (320)
+|+++|+|..|+++++..++..++.+.|++|++|+++|++++++|+|.+|.|+++. +++ .+..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG----- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC----- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----
Confidence 46789999999999999999999999999999999999999999999999999963 333 678899999999
Q ss_pred cCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 146 YGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 146 ~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
.++.++++|.++|+++.|+++.|..++..+|.....+...+.+++
T Consensus 76 --~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 120 (222)
T 1ft9_A 76 --MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRAL 120 (222)
T ss_dssp --SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred --CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999988877666555444
No 77
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.63 E-value=5.4e-16 Score=128.90 Aligned_cols=115 Identities=18% Similarity=0.178 Sum_probs=102.8
Q ss_pred HhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHh
Q psy18137 188 FLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIA 267 (320)
Q Consensus 188 ~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ 267 (320)
+++++++|..+++..+..++..+....|++|++|+++|+.++++|+|.+|.|+++ ...+|+...+..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~--~~~~G~~~~~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY--LVGEEREISLFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE--EEETTEEEEEEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE--ECCCCCEEEEEEcCCCCEec---
Confidence 3567889999999999999999999999999999999999999999999999996 34567778899999999999
Q ss_pred HhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHh
Q psy18137 268 LLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQ 311 (320)
Q Consensus 268 ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~ 311 (320)
.++.++++|.++|+++.|+++.|..++..+|++....+..
T Consensus 76 ----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 115 (222)
T 1ft9_A 76 ----MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAI 115 (222)
T ss_dssp ----SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHH
T ss_pred ----CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHH
Confidence 6789999999999999999999999998888766555443
No 78
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.62 E-value=2.2e-15 Score=127.57 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=105.0
Q ss_pred hhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcC
Q psy18137 192 VSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLD 271 (320)
Q Consensus 192 ~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~ 271 (320)
+..+..+++.++..++..+....|++|++|+.+|+.++++|+|.+|.|+++.. ..+|+...+..+++|++||+ ++.+
T Consensus 14 ~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-~~~G~~~~~~~~~~G~~~G~--~l~~ 90 (250)
T 3e6c_C 14 IIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDII-FEDGSEKLLYYAGGNSLIGK--LYPT 90 (250)
T ss_dssp SSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEE-CTTSCEEEEEEECTTCEECC--CSCC
T ss_pred ccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEE-CCCCCEEEEEEecCCCEEee--ecCC
Confidence 33348889999999999999999999999999999999999999999999954 56677788999999999999 7777
Q ss_pred CCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhh
Q psy18137 272 RPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYN 313 (320)
Q Consensus 272 ~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~ 313 (320)
. +.++++|.++|+++.|+++.|..++..+|++....+....
T Consensus 91 ~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~ 131 (250)
T 3e6c_C 91 G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYL 131 (250)
T ss_dssp S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHH
Confidence 7 9999999999999999999999999999888766655443
No 79
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.60 E-value=3.1e-15 Score=126.61 Aligned_cols=119 Identities=12% Similarity=0.169 Sum_probs=104.5
Q ss_pred HhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---C--EEEEecCCCCeeehhhhh
Q psy18137 71 IAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---N--ELVTSVGEGGSFGELALI 145 (320)
Q Consensus 71 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~--~~~~~~~~G~~fGe~~ll 145 (320)
+.....|..|+++++..+...++.+.|++|++|+++|++++++|||.+|.|+++.. | ..+..+++|++||+ ++
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l 88 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LY 88 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CS
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ec
Confidence 44445558899999999999999999999999999999999999999999999873 2 27888999999999 67
Q ss_pred cCCCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 146 YGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 146 ~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
.+. +.++++|.++|+++.|+++.|..++.++|.....+...+.+++
T Consensus 89 ~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 134 (250)
T 3e6c_C 89 PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKV 134 (250)
T ss_dssp CCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred CCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 777 9999999999999999999999999999988777666555444
No 80
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.60 E-value=1.8e-14 Score=121.42 Aligned_cols=113 Identities=18% Similarity=0.242 Sum_probs=99.1
Q ss_pred HHHHhhhhcccc---eeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCC--c
Q psy18137 200 KWERLTVADSLE---PVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRP--R 274 (320)
Q Consensus 200 ~~~~~~l~~~~~---~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~--~ 274 (320)
+..+..++.... .+.|++|++|+.+|+.++.+|+|.+|.|+++.. ..+|+...+..+++|++||+.+++.+.+ +
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~-~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~ 108 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRV-YEAGEEITVALLRENSVFGVLSLLTGNKSDR 108 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEE-CTTCCEEEEEEECTTCEESCHHHHSSCCSBC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEE-CCCCCEEEEEEecCCCEEcchHHhCCCCCcc
Confidence 456667777777 999999999999999999999999999999954 5667778899999999999999999876 5
Q ss_pred eeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhh
Q psy18137 275 AATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYN 313 (320)
Q Consensus 275 ~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~ 313 (320)
.++++|.++|+++.|+++.|.+++..+|++....+....
T Consensus 109 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~ 147 (243)
T 3la7_A 109 FYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLS 147 (243)
T ss_dssp CEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred eEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHH
Confidence 589999999999999999999999999998876655443
No 81
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.57 E-value=2.2e-16 Score=140.71 Aligned_cols=122 Identities=30% Similarity=0.429 Sum_probs=1.0
Q ss_pred HHHHhcCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcC
Q psy18137 68 SKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYG 147 (320)
Q Consensus 68 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~ 147 (320)
.+.+++.++|++++++.++.++..++.+.|++|++|+++||.++++|+|.+|.++++..+ ...+++|++||+.+++.+
T Consensus 227 ~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~l~~G~~fGe~~~l~~ 304 (355)
T 3beh_A 227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFGEMALISG 304 (355)
T ss_dssp HC------------------------------------------------------------------------------
T ss_pred chhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC--eeEECCCCEEeehHHhCC
Confidence 457899999999999999999999999999999999999999999999999999998766 468999999999999999
Q ss_pred CCcceEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhh
Q psy18137 148 TPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSR 191 (320)
Q Consensus 148 ~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (320)
.++.++++|.++|+++.|++++|.++++++|.........+.++
T Consensus 305 ~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~r 348 (355)
T 3beh_A 305 EPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER 348 (355)
T ss_dssp --------------------------------------------
T ss_pred CCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877665544443
No 82
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.56 E-value=2e-14 Score=137.97 Aligned_cols=137 Identities=24% Similarity=0.354 Sum_probs=115.5
Q ss_pred EEchhhHHHHhhhhhHHHh----hHHHHHhhhhhhcccCcHHHHhhhhcccc-eeEeCCCCeEEccCCCCCeEEEEEecE
Q psy18137 164 GLDRDSYRRILMGSTIRKR----KLYEEFLSRVSILESLEKWERLTVADSLE-PVSFQDKEAIVRQGQPGDDFYIIVEGT 238 (320)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~l~~~~~~~l~~~~~-~~~~~~g~~I~~~g~~~~~~yiI~~G~ 238 (320)
..|...|+.++...+..+. ..+..+++++++|..+++..+..++..+. .+.|++|++|+++|+.++++|+|.+|.
T Consensus 5 ~~p~~~~r~iL~k~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~ 84 (694)
T 3cf6_E 5 SFPDAHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGS 84 (694)
T ss_dssp ------CHHHHHSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESE
T ss_pred cCcHHHHHHHHcCChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEE
Confidence 3566778888876665543 23566788999999999999999999997 689999999999999999999999999
Q ss_pred EEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEec-CeEEEEEehHHHHHhhcCHHHHH
Q psy18137 239 ALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKG-PLKCVKLDRARFERVLGPCADIL 305 (320)
Q Consensus 239 v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~-~~~v~~i~~~~f~~ll~~~~~~~ 305 (320)
|+++.. ++ ..+..+++|++||+.+++.+.++.++++|.+ +|+++.|++++|.+++..+|.+.
T Consensus 85 V~v~~~----g~-~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~ 147 (694)
T 3cf6_E 85 VNVVIY----GK-GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANT 147 (694)
T ss_dssp EEEEET----TT-EEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCC
T ss_pred EEEEEe----CC-EEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHH
Confidence 999853 22 4789999999999999999999999999999 59999999999999999888763
No 83
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.54 E-value=6.3e-14 Score=118.07 Aligned_cols=111 Identities=21% Similarity=0.238 Sum_probs=97.3
Q ss_pred HHHHHHHHhcce---eEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---C--EEEEecCCCCeeehhhhhcCCC--cc
Q psy18137 82 ENTRSDIFDAMF---PVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---N--ELVTSVGEGGSFGELALIYGTP--RA 151 (320)
Q Consensus 82 ~~~~~~l~~~~~---~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~--~~~~~~~~G~~fGe~~ll~~~~--~~ 151 (320)
++.++.+..... .+.|++|++|+++|+.++++|||++|.|+++.. | ..+..+++|++||+.+++.+.+ +.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 677888888888 999999999999999999999999999999872 2 2788899999999999999886 45
Q ss_pred eEEeeeceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 152 ATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 152 ~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
++++|.++|.++.|+++.|.+++.++|.....+...+.+++
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 150 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRI 150 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988777655444443
No 84
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.54 E-value=5.8e-14 Score=117.88 Aligned_cols=114 Identities=10% Similarity=0.079 Sum_probs=96.2
Q ss_pred CCCCHHHHHHHHh--cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CE--EEEecCCCCeeehhhhhcCCCc
Q psy18137 78 SHLDENTRSDIFD--AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NE--LVTSVGEGGSFGELALIYGTPR 150 (320)
Q Consensus 78 ~~l~~~~~~~l~~--~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~--~~~~~~~G~~fGe~~ll~~~~~ 150 (320)
++++++++..++. .++.+.|++|++|+++|++++++|||++|.|+++.. |+ .+..+ +|++||+.+++.+.++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~ 80 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS 80 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence 4678899999885 599999999999999999999999999999999872 22 66777 9999999999998864
Q ss_pred --ceEEeee-ceEEEEEEchhhHHHHhhhhhHHHhhHHHHHhhhh
Q psy18137 151 --AATVRAK-TDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRV 192 (320)
Q Consensus 151 --~~tv~a~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (320)
..++.|. ++|.++.|+++.|..++.++|.....+...+.+++
T Consensus 81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 125 (238)
T 2bgc_A 81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQV 125 (238)
T ss_dssp SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 6677777 59999999999999999999988877666555444
No 85
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.54 E-value=3.7e-14 Score=119.06 Aligned_cols=115 Identities=10% Similarity=0.086 Sum_probs=97.0
Q ss_pred cCcHHHHhhhhc--ccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCc
Q psy18137 197 SLEKWERLTVAD--SLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPR 274 (320)
Q Consensus 197 ~l~~~~~~~l~~--~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~ 274 (320)
++++.++..+.. .+..+.|++|++|+.+|+.++++|+|.+|.|+++.. ..+|+...+..+ +|++||+.+++.+.++
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~-~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~ 80 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSI-SENGTIMNLQYY-KGAFVIMSGFIDTETS 80 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEE-CTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEE-CCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence 466777777764 588999999999999999999999999999999854 456777888888 9999999999988864
Q ss_pred --eeEEEEe-cCeEEEEEehHHHHHhhcCHHHHHHHHHHhhh
Q psy18137 275 --AATVVAK-GPLKCVKLDRARFERVLGPCADILKRNITQYN 313 (320)
Q Consensus 275 --~~tv~a~-~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~ 313 (320)
.+++.|. ++|+++.|+++.|..++..+|++....+....
T Consensus 81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~ 122 (238)
T 2bgc_A 81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQ 122 (238)
T ss_dssp SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHH
Confidence 6777777 59999999999999999999988766655443
No 86
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.50 E-value=1.2e-13 Score=112.36 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=75.2
Q ss_pred eEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehH
Q psy18137 213 VSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRA 292 (320)
Q Consensus 213 ~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~ 292 (320)
+.|++|++|+++|+.++++|+|.+|.|+++.. ..+|+...+..+++|++||+ +++.+.++.++++|.++|+++.|+++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~ 79 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVEL-LPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPR 79 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEE-CTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEE-CCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHH
Confidence 57999999999999999999999999999854 45677788999999999999 99999999999999999999999999
Q ss_pred HHH
Q psy18137 293 RFE 295 (320)
Q Consensus 293 ~f~ 295 (320)
.|.
T Consensus 80 ~~~ 82 (195)
T 3b02_A 80 AMD 82 (195)
T ss_dssp GCC
T ss_pred HcC
Confidence 987
No 87
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.49 E-value=3.9e-15 Score=132.61 Aligned_cols=123 Identities=25% Similarity=0.406 Sum_probs=0.9
Q ss_pred HHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecH
Q psy18137 186 EEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGE 265 (320)
Q Consensus 186 ~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 265 (320)
..++++.++|+.+++..+..++..++...|++|+.|+++|+.++++|+|.+|.++++... ...+++|++||+
T Consensus 227 ~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--------~~~l~~G~~fGe 298 (355)
T 3beh_A 227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--------PVELGPGAFFGE 298 (355)
T ss_dssp HC------------------------------------------------------------------------------
T ss_pred chhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC--------eeEECCCCEEee
Confidence 356788899999999999999999999999999999999999999999999999998542 257899999999
Q ss_pred HhHhcCCCceeEEEEecCeEEEEEehHHHHHhhcCHHHHHHHHHHhhhhcc
Q psy18137 266 IALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYNSFV 316 (320)
Q Consensus 266 ~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~~~~~~ 316 (320)
.+++.+.++.++++|.++|+++.|++++|.+++.++|++.....+...+.+
T Consensus 299 ~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl 349 (355)
T 3beh_A 299 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 349 (355)
T ss_dssp ---------------------------------------------------
T ss_pred hHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877766555443
No 88
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.42 E-value=7.7e-13 Score=107.47 Aligned_cols=76 Identities=25% Similarity=0.334 Sum_probs=70.9
Q ss_pred EEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---C--EEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhh
Q psy18137 95 VNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---N--ELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDS 169 (320)
Q Consensus 95 ~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~ 169 (320)
+.|++|++|+++|++++++|||++|.|+++.. + ..+..+++|++||+ +++.+.++.++++|.++|.++.||++.
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 68999999999999999999999999999862 2 27889999999999 999999999999999999999999999
Q ss_pred HH
Q psy18137 170 YR 171 (320)
Q Consensus 170 ~~ 171 (320)
|.
T Consensus 81 ~~ 82 (195)
T 3b02_A 81 MD 82 (195)
T ss_dssp CC
T ss_pred cC
Confidence 97
No 89
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.41 E-value=6.2e-13 Score=108.61 Aligned_cols=87 Identities=25% Similarity=0.388 Sum_probs=75.6
Q ss_pred hhcccceeEeCCCCeEEccCCCC--CeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecC
Q psy18137 206 VADSLEPVSFQDKEAIVRQGQPG--DDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGP 283 (320)
Q Consensus 206 l~~~~~~~~~~~g~~I~~~g~~~--~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~ 283 (320)
|+..+....|++|++|+.+|+++ +++|+|.+|.|+++.. ..+|+...+..+++|++||+ +++.+.++.++++|.++
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~-~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~ 78 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAV-DEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATD 78 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEE-CTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSC
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEE-CCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEccc
Confidence 34567889999999999999999 9999999999999854 45677788999999999999 88889999999999999
Q ss_pred eEEEEEehHHHH
Q psy18137 284 LKCVKLDRARFE 295 (320)
Q Consensus 284 ~~v~~i~~~~f~ 295 (320)
|+++.| ++.|.
T Consensus 79 ~~v~~i-~~~~~ 89 (202)
T 2zcw_A 79 VRLEPL-PENPD 89 (202)
T ss_dssp EEEEEC-CSSCC
T ss_pred EEEEEE-hHhcC
Confidence 999999 88775
No 90
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.29 E-value=5.8e-12 Score=102.81 Aligned_cols=82 Identities=28% Similarity=0.363 Sum_probs=71.1
Q ss_pred HHhcceeEEeCCCCeEEecCCCC--CeEEEEEeeEEEEEEc---C--EEEEecCCCCeeehhhhhcCCCcceEEeeeceE
Q psy18137 88 IFDAMFPVNCLPGESIITQGDEG--DNFYVIDQGEVEVYVN---N--ELVTSVGEGGSFGELALIYGTPRAATVRAKTDV 160 (320)
Q Consensus 88 l~~~~~~~~~~~g~~I~~~G~~~--~~~yiI~~G~v~v~~~---~--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~ 160 (320)
|...++.+.|++|++|+++|+++ +++|+|++|.|+++.. | ..+..+++|++||+ +++.+.++.++++|.++|
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~ 79 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDV 79 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCE
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccE
Confidence 35678899999999999999999 9999999999999862 3 27888999999999 888899999999999999
Q ss_pred EEEEEchhhHH
Q psy18137 161 KLWGLDRDSYR 171 (320)
Q Consensus 161 ~~~~i~~~~~~ 171 (320)
.++.| ++.|.
T Consensus 80 ~v~~i-~~~~~ 89 (202)
T 2zcw_A 80 RLEPL-PENPD 89 (202)
T ss_dssp EEEEC-CSSCC
T ss_pred EEEEE-hHhcC
Confidence 99999 88875
No 91
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=97.71 E-value=0.00077 Score=55.45 Aligned_cols=174 Identities=14% Similarity=0.167 Sum_probs=103.4
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhH
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSY 170 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~ 170 (320)
.+....+.+|+.+=..--+.+.+++|++|++++..+++. ..+.+|+++= ........+.|.+++.++.+....-
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~~-~~l~~Gd~~~-----~p~~~~H~~~a~~~~~~l~i~~~~~ 111 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENNK-KTISNGDFLE-----ITANHNYSIEARDNLKLIEIGEKIG 111 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSCE-EEEETTEEEE-----ECSSCCEEEEESSSEEEEEEEECC-
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCEE-EEECCCCEEE-----ECCCCCEEEEECCCcEEEEEEeecc
Confidence 456778899999877777789999999999999998764 5688898763 2333456777888998887733321
Q ss_pred -HHH----hhhhhHHHhhHHHHHhhhhhhcccCcHH--HHhhhh----cccceeEeCCCCeEEccCCCCCeEEEEEecEE
Q psy18137 171 -RRI----LMGSTIRKRKLYEEFLSRVSILESLEKW--ERLTVA----DSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTA 239 (320)
Q Consensus 171 -~~~----~~~~~~~~~~~~~~~l~~~~~~~~l~~~--~~~~l~----~~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v 239 (320)
.++ +..-+. .....+...++ +.+. ....+. -.+....+.+|..+-.--...+.+++|++|++
T Consensus 112 ~~~~~~~~~~~l~~---~~~~~~~d~~~----~~~g~~~~~~l~~~~~~~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~ 184 (227)
T 3rns_A 112 DGNMENKTLKMLES---ASAFNLAEVVE----YQEGKIVSKNLVAKPNLVMTIMSFWKGESLDPHKAPGDALVTVLDGEG 184 (227)
T ss_dssp ------------------CCEESGGGSC----CCTTCEEEEEEEEETTEEEEEEEECTTCEEEEECCSSEEEEEEEEEEE
T ss_pred cchhhhhHhhcCCc---cccCcHHHccc----cCCCCEEEEEEEECCCeEEEEEEECCCCccCCEECCCcEEEEEEeEEE
Confidence 111 110000 00000001111 1111 011111 12334677888876544445678999999999
Q ss_pred EEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEE-ecCeEEEEE
Q psy18137 240 LVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA-KGPLKCVKL 289 (320)
Q Consensus 240 ~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a-~~~~~v~~i 289 (320)
.+... + ....+.+||++ +........+.+ .+++.++.+
T Consensus 185 ~~~i~----g---~~~~l~~Gd~i-----~ip~~~~H~~~~~~~~~~~ll~ 223 (227)
T 3rns_A 185 KYYVD----G---KPFIVKKGESA-----VLPANIPHAVEAETENFKMLLI 223 (227)
T ss_dssp EEEET----T---EEEEEETTEEE-----EECTTSCEEEECCSSCEEEEEE
T ss_pred EEEEC----C---EEEEECCCCEE-----EECCCCcEEEEeCCCCEEEEEE
Confidence 98742 2 25678999987 223323456677 788766644
No 92
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=95.08 E-value=0.09 Score=43.49 Aligned_cols=177 Identities=16% Similarity=0.105 Sum_probs=91.9
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchh--h
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRD--S 169 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~--~ 169 (320)
+....+++|...-..- .+.+++|++|++.+..+++ ...+++||++--. .+.++. +...+++.++.+.+. .
T Consensus 52 ~~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~~~-~~~l~~Gd~~~~p---~~~~H~--~~n~~~~~~l~v~~~y~~ 123 (246)
T 1sfn_A 52 QFTAEMPAGAQATESV--YQRFAFVLSGEVDVAVGGE-TRTLREYDYVYLP---AGEKHM--LTAKTDARVSVFEKPYQT 123 (246)
T ss_dssp EEEEEECTTCEEECCS--SEEEEEEEEEEEEEECSSC-EEEECTTEEEEEC---TTCCCE--EEEEEEEEEEEEEECCCC
T ss_pred EEEEEECCCCcCCCCc--eeEEEEEEECEEEEEECCE-EEEECCCCEEEEC---CCCCEE--EEeCCCEEEEEEEeeecc
Confidence 3456788887665442 7889999999999998775 4679999987422 233333 333366666555311 1
Q ss_pred HHHH------hhhhhHHHhhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEEc-cCCCCCeEEEEEecEEEEE
Q psy18137 170 YRRI------LMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVR-QGQPGDDFYIIVEGTALVL 242 (320)
Q Consensus 170 ~~~~------~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~-~g~~~~~~yiI~~G~v~v~ 242 (320)
.... +.+........+.. -..+ ..+.+.+... ...-.+....+++|..+=. ........++|++|+..+.
T Consensus 124 ~~g~~~p~~~vg~~~dv~~~~~~~-~~g~-~~r~l~p~~~-~~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~ 200 (246)
T 1sfn_A 124 VEGVQAPGVYWGNERENPGYPFEG-DDHL-IARKLLPDEP-AFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYK 200 (246)
T ss_dssp BTTBCCCCCEEEETTTCCCEETTS-CTTE-EEEECSCCCT-TCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEE
T ss_pred CCCCcCCceeeccHhhCCccccCC-CCCe-EEEEeCCCcc-CCCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEE
Confidence 1000 00000000000000 0000 0011111111 2233455667888876543 4445678999999999887
Q ss_pred EeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEE
Q psy18137 243 QNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKL 289 (320)
Q Consensus 243 ~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i 289 (320)
.. + ....+.+||++-- -.+.+..+.-...+++..+..
T Consensus 201 ~~----~---~~~~l~~GD~~~~---~~~~pH~~~n~g~~~~~yl~~ 237 (246)
T 1sfn_A 201 LE----E---NYYPVTAGDIIWM---GAHCPQWYGALGRNWSKYLLY 237 (246)
T ss_dssp ET----T---EEEEEETTCEEEE---CTTCCEEEEEESSSCEEEEEE
T ss_pred EC----C---EEEEcCCCCEEEE---CCCCCEEEEcCCCCCEEEEEE
Confidence 42 2 2467999999731 113344333333344654443
No 93
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=93.93 E-value=0.075 Score=44.35 Aligned_cols=155 Identities=10% Similarity=0.021 Sum_probs=86.2
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHH
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYR 171 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~ 171 (320)
+...++.+|..--.....++.+.+|++|++.+..++.....+.+|++|=..+ +. ..++...+++.++.+.+.- .
T Consensus 72 ~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~~~~L~~Gds~y~p~---~~--~H~~~N~~~Ar~l~V~k~y-~ 145 (266)
T 4e2q_A 72 MYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPP---NF--HHSLDCVESATLVVFERRY-E 145 (266)
T ss_dssp EEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CCCEEECTTEEEEECT---TC--CCEEEESSCEEEEEEEEEC-C
T ss_pred EEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCcEEEEcCCCEEEECC---CC--CEEEEeCCCEEEEEEEeEe-e
Confidence 5567788887642223346899999999999998722456799999874321 22 3334445677777774432 1
Q ss_pred HHhhhhh--------HHHhhHHHHHhhhhhhcccCcHHHHhhhhcccceeEeCCCCeEE-ccCCCCCeEEEEEecEEEEE
Q psy18137 172 RILMGST--------IRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIV-RQGQPGDDFYIIVEGTALVL 242 (320)
Q Consensus 172 ~~~~~~~--------~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~I~-~~g~~~~~~yiI~~G~v~v~ 242 (320)
.+--..| ......+.. + -...+-+.+.+. ...-.+....+.+|..+= .+-.....-++|++|+..+.
T Consensus 146 ~~~g~~p~~~v~~~~dv~~~~~~g--~-~~~~r~l~p~~~-~~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~ 221 (266)
T 4e2q_A 146 YLGSHTTELIVGSTDKQPLLETPG--E-VFELRKLLPMSV-AYDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYR 221 (266)
T ss_dssp CCTTCCCCCEEEEGGGSCCBCCTT--C-CSEEEESSCCST-TCSEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEE
T ss_pred eCCCCCCceeeCcHhHCCCcccCC--C-cEEEEEccCccc-ccceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEE
Confidence 1000001 000000000 0 000111122222 233445667789998873 46666678899999999876
Q ss_pred EeccCCCccEEEEEeCCCCee
Q psy18137 243 QNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 243 ~~~~~~~~~~~~~~l~~G~~f 263 (320)
.+ + ....+++||++
T Consensus 222 l~----~---~~~~V~~GD~i 235 (266)
T 4e2q_A 222 LG----D---NWYPVQAGDVI 235 (266)
T ss_dssp ET----T---EEEEEETTCEE
T ss_pred EC----C---EEEEecCCCEE
Confidence 32 2 25678899987
No 94
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=93.59 E-value=2.5 Score=34.50 Aligned_cols=176 Identities=10% Similarity=0.013 Sum_probs=88.7
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee-hhhhhcCCCcceEEeeeceEEEEEEchhh
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG-ELALIYGTPRAATVRAKTDVKLWGLDRDS 169 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG-e~~ll~~~~~~~tv~a~~~~~~~~i~~~~ 169 (320)
.+....+.+|..+-..--....+++|++|.+.+..+++ ...+.+|+++= - -.+.++.......++|.++.+.+-.
T Consensus 35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~~-~~~l~~Gd~i~~i---p~~~~H~~~n~~~~~~~~l~i~r~~ 110 (243)
T 3h7j_A 35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDV-TRKMTALESAYIA---PPHVPHGARNDTDQEVIAIDIKRLK 110 (243)
T ss_dssp EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEETTE-EEEEETTTCEEEE---CTTCCEEEEECSSSCEEEEEEEECC
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEECCE-EEEECCCCEEEEc---CCCCcEeeEeCCCCcEEEEEEeccC
Confidence 45556688988765444457889999999999998775 46788998441 1 1233333333333446666553221
Q ss_pred HHHHhhhhhHHHhhHHHHHhhhhhhcccCcHHHHhhh-hcc--cceeEeCC-CCeEEccCCCCCeEEEEEecEEEEEEec
Q psy18137 170 YRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTV-ADS--LEPVSFQD-KEAIVRQGQPGDDFYIIVEGTALVLQNT 245 (320)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l-~~~--~~~~~~~~-g~~I~~~g~~~~~~yiI~~G~v~v~~~~ 245 (320)
- ....+.... . ++..+..-..+.......+ ... +....+.+ |..+-.--.....+++|++|.+.+...
T Consensus 111 ~---~e~~~~p~g-~---~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~- 182 (243)
T 3h7j_A 111 A---DETYTSPED-Y---FLDIFKTRDLLPGMEVTFFVEDWVEIMLAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVE- 182 (243)
T ss_dssp T---TCCCCCCTT-S---EECCEECSCSBTTBCEEEEEETTEEEEEEEECTTTEEEEEECCSSEEEEEECSSCEEEEET-
T ss_pred c---cccCCCchh-h---hhhhccCcccccCcceeeeccceeEEEEEEECCCCCcCCCEeCCCcEEEEEEECEEEEEEC-
Confidence 0 000000000 0 0000000000000000000 011 12345777 665543333456788999999998742
Q ss_pred cCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEe--cCeEEEEE
Q psy18137 246 VEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAK--GPLKCVKL 289 (320)
Q Consensus 246 ~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~--~~~~v~~i 289 (320)
+ ....+.+||.+--- .+.+. .+.+. +++.++.+
T Consensus 183 ---~---~~~~l~~Gd~i~ip---~~~~H--~~~n~~~~~~~~l~v 217 (243)
T 3h7j_A 183 ---G---CTVEMKFGTAYFCE---PREDH--GAINRSEKESKSINI 217 (243)
T ss_dssp ---T---EEEEECTTCEEEEC---TTCCE--EEEECSSSCEEEEEE
T ss_pred ---C---EEEEECCCCEEEEC---CCCcE--EeEeCCCCCEEEEEE
Confidence 1 24569999997311 13333 44444 45655544
No 95
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=93.52 E-value=0.63 Score=32.92 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=44.6
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEE
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGL 165 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i 165 (320)
+....+.+|..+-......+.+++|++|.+.+..+++ ...+.+|+++= .+......+.+.+++.++.+
T Consensus 40 ~~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~-~~~l~~Gd~i~-----i~~~~~H~~~~~~~~~~~~i 107 (114)
T 2ozj_A 40 ISLFSFADGESVSEEEYFGDTLYLILQGEAVITFDDQ-KIDLVPEDVLM-----VPAHKIHAIAGKGRFKMLQI 107 (114)
T ss_dssp EEEEEEETTSSCCCBCCSSCEEEEEEEEEEEEEETTE-EEEECTTCEEE-----ECTTCCBEEEEEEEEEEEEE
T ss_pred EEEEEECCCCccccEECCCCeEEEEEeCEEEEEECCE-EEEecCCCEEE-----ECCCCcEEEEeCCCcEEEEE
Confidence 3444567777654444456889999999999998875 56799998763 22222334455566666554
No 96
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=93.03 E-value=1 Score=32.00 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=47.9
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEE
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLW 163 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~ 163 (320)
.+....+++|..+-..-...+.+++|++|++.+..+++ ...+.+|+.+= ........+.+.+++.++
T Consensus 37 ~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-~~~l~~Gd~i~-----ip~~~~H~~~~~~~~~~~ 103 (114)
T 3fjs_A 37 EVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGA-QRRLHQGDLLY-----LGAGAAHDVNAITNTSLL 103 (114)
T ss_dssp EEEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTE-EEEECTTEEEE-----ECTTCCEEEEESSSEEEE
T ss_pred EEEEEEECCCCccCceeCCCcEEEEEEECEEEEEECCE-EEEECCCCEEE-----ECCCCcEEEEeCCCcEEE
Confidence 45567788998876655566899999999999999886 56789998764 222334456666665543
No 97
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=92.64 E-value=1.7 Score=36.09 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=50.0
Q ss_pred eeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEeh
Q psy18137 212 PVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDR 291 (320)
Q Consensus 212 ~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~ 291 (320)
...|.+|+.+...... +.++.+++|+..|+.. + ....|.+||.+ +-.....+++.+.++|.++.|..
T Consensus 211 V~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~~---~----q~~~L~~~DsL-----LIpa~~~y~~~r~~gsv~L~I~~ 277 (286)
T 2qnk_A 211 VIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTMG---G----RRLSLAPDDSL-----LVLAGTSYAWERTQGSVALSVTQ 277 (286)
T ss_dssp EEEECSEEEEECCCSS-CEEEEEEESCEEEEET---T----EEEEECTTEEE-----EECTTCCEEEEECTTCEEEEEEE
T ss_pred EEEEcCCccccccCcC-cEEEEEEcCceEEEEC---C----eEEeccCCCEE-----EecCCCeEEEEecCCeEEEEEEE
Confidence 3457788887777777 8999999999876632 1 25678899887 22333678899999999998864
Q ss_pred H
Q psy18137 292 A 292 (320)
Q Consensus 292 ~ 292 (320)
+
T Consensus 278 ~ 278 (286)
T 2qnk_A 278 D 278 (286)
T ss_dssp C
T ss_pred C
Confidence 3
No 98
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=92.10 E-value=5.9 Score=34.94 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=35.8
Q ss_pred eeEEeCCCCeEEecCCCCCeEEEEEeeEEEE-EEcCEEEEecCCCCeee
Q psy18137 93 FPVNCLPGESIITQGDEGDNFYVIDQGEVEV-YVNNELVTSVGEGGSFG 140 (320)
Q Consensus 93 ~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v-~~~~~~~~~~~~G~~fG 140 (320)
....+.+|+.+-..-.....+|+|++|+-.. ..++ ....+++||+|=
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G-~~~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDG-HKVELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETT-EEEEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECC-EEEEEcCCCEEE
Confidence 6778889988766555567899999999866 4555 456799999873
No 99
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=90.61 E-value=2.4 Score=29.68 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=44.7
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEE
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGL 165 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i 165 (320)
+....+.+|..+-..-.....+++|++|.+.+..+++. ..+.+|+.+= ........+.+.+++.++.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~-----ip~~~~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQET-YRVAEGQTIV-----MPAGIPHALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTEE-EEEETTCEEE-----ECTTSCEEEEESSCEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCEE-EEECCCCEEE-----ECCCCCEEEEECCCceEEEE
Confidence 45567788887643333467899999999999988754 5788998763 22222334555556665554
No 100
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=90.09 E-value=2.9 Score=29.34 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=45.2
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEE
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGL 165 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i 165 (320)
.+....+.+|..+-..-.....+++|++|.+.+..+++ ...+.+|+.+= .+......+.+.+++.++.+
T Consensus 35 ~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~-----ip~~~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 35 MAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGV-IKVLTAGDSFF-----VPPHVDHGAVCPTGGILIDT 103 (116)
T ss_dssp EEEEEEECTTEEEEEECCSSEEEEEEEEECEEEEETTE-EEEECTTCEEE-----ECTTCCEEEEESSCEEEEEE
T ss_pred EEEEEEECCCCcCCcEECCcceEEEEEeeEEEEEECCE-EEEeCCCCEEE-----ECcCCceeeEeCCCcEEEEE
Confidence 34556778887653322236789999999999988775 56799998753 22222344555557766655
No 101
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=89.85 E-value=0.28 Score=41.28 Aligned_cols=159 Identities=11% Similarity=0.110 Sum_probs=81.7
Q ss_pred ceeEEeCCCCeEEe--cCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhh
Q psy18137 92 MFPVNCLPGESIIT--QGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDS 169 (320)
Q Consensus 92 ~~~~~~~~g~~I~~--~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~ 169 (320)
+....+.+|...-. .....+.+++|++|++.+..+++ ...+++||++-.- .+.++.......+++.++.+....
T Consensus 70 ~~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~g~-~~~L~~GD~i~ip---~~~~H~~~N~g~~~~~~l~v~~~y 145 (278)
T 1sq4_A 70 QYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQ-VHAMQPGGYAFIP---PGADYKVRNTTGQHTRFHWIRKHY 145 (278)
T ss_dssp EEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSC-EEEECTTEEEEEC---TTCCEEEECCSSSCEEEEEEEEEC
T ss_pred EEEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEECCE-EEEECCCCEEEEC---CCCcEEEEECCCCCEEEEEEEecc
Confidence 34566778876621 12235789999999999998875 4579999986421 122332222222446555543210
Q ss_pred --HHHH------hhhhhHHHhhHHHHHhhhhh-hcccCcHHHHhhhhcccceeEeCCCCeEEc-cCCCCCeEEEEEecEE
Q psy18137 170 --YRRI------LMGSTIRKRKLYEEFLSRVS-ILESLEKWERLTVADSLEPVSFQDKEAIVR-QGQPGDDFYIIVEGTA 239 (320)
Q Consensus 170 --~~~~------~~~~~~~~~~~~~~~l~~~~-~~~~l~~~~~~~l~~~~~~~~~~~g~~I~~-~g~~~~~~yiI~~G~v 239 (320)
...+ +.+.......-+.. ....+ ..+.+.+... ...-.+....+.+|..+-. ....-...++|++|+.
T Consensus 146 ~~~~g~~~p~~~vgn~~di~~~~~~~-~~~~~~~~r~l~p~~~-~~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~ 223 (278)
T 1sq4_A 146 QKVDGVPLPEAFVTNEQDIQPLVMPD-TEGRWSTTRFVDMSDM-RHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKA 223 (278)
T ss_dssp CCCTTCCCCCCEEEEGGGSCCEECSS-GGGCEEEECSSCTTCT-TCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEE
T ss_pred ccCCCCcCCcccccchhhcCcccCCC-CCCceeEEEEecCCCc-CCCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEE
Confidence 0000 00000000000000 00000 0111121111 1233455678888888764 4444457889999999
Q ss_pred EEEEeccCCCccEEEEEeCCCCee
Q psy18137 240 LVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 240 ~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
.+..+ + ....+.+||++
T Consensus 224 ~~~~~----~---~~~~v~~GD~~ 240 (278)
T 1sq4_A 224 VYRLN----Q---DWVEVEAGDFM 240 (278)
T ss_dssp EEEET----T---EEEEEETTCEE
T ss_pred EEEEC----C---EEEEeCCCCEE
Confidence 88732 2 35778899986
No 102
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=89.28 E-value=0.56 Score=36.31 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=44.4
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEE
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGL 165 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i 165 (320)
.+....+.+|...-..-.....+++|++|++.+..++.....+++||++ .. .+.++...-...+.+.++.+
T Consensus 80 ~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~~~L~~GDsi-~~---~g~~H~~~N~g~~~ar~l~V 150 (172)
T 3es1_A 80 VIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGAKRTVRQGGII-VQ---RGTNHLWRNTTDKPCRIAFI 150 (172)
T ss_dssp EEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGCEEEECTTCEE-EE---CSCCBEEECCSSSCEEEEEE
T ss_pred EEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCeEEEECCCCEE-Ee---CCCcEEEEeCCCCCEEEEEE
Confidence 4556678888754333233466889999999998873345679999997 32 34444443333344554443
No 103
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=89.06 E-value=0.99 Score=30.89 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=35.1
Q ss_pred ceeEEeCCCCeE-EecCCCCCeEEEEEeeEEEEEEcCE-EEEecCCCCeee
Q psy18137 92 MFPVNCLPGESI-ITQGDEGDNFYVIDQGEVEVYVNNE-LVTSVGEGGSFG 140 (320)
Q Consensus 92 ~~~~~~~~g~~I-~~~G~~~~~~yiI~~G~v~v~~~~~-~~~~~~~G~~fG 140 (320)
+....+++|... .+.....+.+++|++|++.+..++. ....+.+|+++-
T Consensus 20 ~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 20 VTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYT 70 (97)
T ss_dssp EEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEE
T ss_pred EEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEE
Confidence 345667888764 2333323459999999999998875 567899999874
No 104
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=88.96 E-value=3.3 Score=29.52 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=36.9
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
.+....+.+|..+-..-.....+++|++|.+.+..+++. ..+.+|+.+
T Consensus 42 ~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~ 89 (126)
T 4e2g_A 42 MLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEET-RVLRPGMAY 89 (126)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTEE-EEECTTEEE
T ss_pred EEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCEE-EEeCCCCEE
Confidence 455677888887654444468899999999999988754 678999876
No 105
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=88.78 E-value=5 Score=28.65 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=36.4
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
+....+.+|..+-.. ...+.+++|++|++.+..+++ ...+++||++-
T Consensus 42 ~~~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~g~-~~~l~~GD~v~ 88 (119)
T 3lwc_A 42 IGYGRYAPGQSLTET-MAVDDVMIVLEGRLSVSTDGE-TVTAGPGEIVY 88 (119)
T ss_dssp EEEEEECTTCEEEEE-CSSEEEEEEEEEEEEEEETTE-EEEECTTCEEE
T ss_pred EEEEEECCCCCcCcc-CCCCEEEEEEeCEEEEEECCE-EEEECCCCEEE
Confidence 345667888766443 377899999999999999775 56799999874
No 106
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=88.65 E-value=4.5 Score=28.47 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=43.9
Q ss_pred ceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEE
Q psy18137 211 EPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVK 288 (320)
Q Consensus 211 ~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~ 288 (320)
....+.+|..+-.--.....+++|++|++.+... + ....+.+||.+= .+.....++.+.+++.++.
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~----~---~~~~l~~Gd~i~-----ip~~~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVD----G---AQRRLHQGDLLY-----LGAGAAHDVNAITNTSLLV 104 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEET----T---EEEEECTTEEEE-----ECTTCCEEEEESSSEEEEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEEC----C---EEEEECCCCEEE-----ECCCCcEEEEeCCCcEEEE
Confidence 3456778877654445567899999999998742 1 257799999882 2333445667777765543
No 107
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=88.17 E-value=2.5 Score=30.95 Aligned_cols=46 Identities=15% Similarity=-0.039 Sum_probs=34.3
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
+....+.+|..-.+ ...+.+++|++|++.+..+++.. .+++||+|-
T Consensus 59 ~~~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~g~~~-~l~~GD~i~ 104 (133)
T 2pyt_A 59 AGFMQWDNAFFPWT--LNYDEIDMVLEGELHVRHEGETM-IAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEEEE--CSSEEEEEEEEEEEEEEETTEEE-EEETTCEEE
T ss_pred EEEEEECCCCcccc--CCCCEEEEEEECEEEEEECCEEE-EECCCcEEE
Confidence 34556778843233 24689999999999999987654 799999875
No 108
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=87.62 E-value=3.3 Score=33.37 Aligned_cols=68 Identities=24% Similarity=0.247 Sum_probs=48.1
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEee-eceEEEEE
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRA-KTDVKLWG 164 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a-~~~~~~~~ 164 (320)
.+....+++|..+-..-.+.+.+++|++|++.+..+++ ...+.+|+++= ........+.+ .+++.++.
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~-~~~l~~Gd~i~-----ip~~~~H~~~~~~~~~~~ll 222 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGK-PFIVKKGESAV-----LPANIPHAVEAETENFKMLL 222 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTE-EEEEETTEEEE-----ECTTSCEEEECCSSCEEEEE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCE-EEEECCCCEEE-----ECCCCcEEEEeCCCCEEEEE
Confidence 34567788998876544456789999999999998885 56788998763 22233455666 77776554
No 109
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=87.61 E-value=3.2 Score=29.08 Aligned_cols=62 Identities=24% Similarity=0.485 Sum_probs=37.6
Q ss_pred eCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhc-CCCceeEEEEecCeEEEEE
Q psy18137 215 FQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLL-DRPRAATVVAKGPLKCVKL 289 (320)
Q Consensus 215 ~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~-~~~~~~tv~a~~~~~v~~i 289 (320)
+.+|..+-.-......+++|++|.+.+... + ....+.+||++= +. +.++ ++.+.+++.++.+
T Consensus 45 ~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~----~---~~~~l~~Gd~i~----i~~~~~H--~~~~~~~~~~~~i 107 (114)
T 2ozj_A 45 FADGESVSEEEYFGDTLYLILQGEAVITFD----D---QKIDLVPEDVLM----VPAHKIH--AIAGKGRFKMLQI 107 (114)
T ss_dssp EETTSSCCCBCCSSCEEEEEEEEEEEEEET----T---EEEEECTTCEEE----ECTTCCB--EEEEEEEEEEEEE
T ss_pred ECCCCccccEECCCCeEEEEEeCEEEEEEC----C---EEEEecCCCEEE----ECCCCcE--EEEeCCCcEEEEE
Confidence 445544332233457899999999998742 1 256799999872 22 3344 4444566665554
No 110
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=86.51 E-value=4 Score=30.06 Aligned_cols=67 Identities=10% Similarity=0.198 Sum_probs=45.3
Q ss_pred EEccCCCCCeEEEEEecEEEEEEeccC-CCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehH
Q psy18137 221 IVRQGQPGDDFYIIVEGTALVLQNTVE-EESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRA 292 (320)
Q Consensus 221 I~~~g~~~~~~yiI~~G~v~v~~~~~~-~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~ 292 (320)
-+...+..|.+|+|++|++.+...... +........+.+|+++- + ...--.+-+|..+|.++.|...
T Consensus 43 ~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yv----V-PkGveH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 43 HLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYN----V-PAECWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEE----E-CTTCEEEEEECTTCEEEEEEES
T ss_pred hhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEE----e-CCCccCcccCCCceEEEEEEeC
Confidence 356677889999999999998865321 11123456789999982 2 2222345566788999988765
No 111
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=85.61 E-value=6.7 Score=27.05 Aligned_cols=47 Identities=15% Similarity=-0.026 Sum_probs=35.5
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
+-...+.+|..-.. -..+.+++|++|++.+..++.....+++||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g~~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDGKKYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTCCEEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEECCCCEEEECCCCEEE
Confidence 33567788876554 346899999999999998734566799999774
No 112
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=85.27 E-value=1.2 Score=31.05 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=42.4
Q ss_pred EeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhh
Q psy18137 96 NCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDS 169 (320)
Q Consensus 96 ~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~ 169 (320)
...+|....+..+..+.+++|++|.+.+..++.....+.+|+.+=-. .+.+ ..+.+.+++.++.+....
T Consensus 34 ~~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~ip---~~~~--H~~~~~~~~~~l~i~~~~ 102 (107)
T 2i45_A 34 VKLLGDYGWHTHGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAVVP---KSVS--HRPRSENGCSLVLIELSD 102 (107)
T ss_dssp EEEEEECCCBCC--CCEEEEESSSCEEEEETTSCEEEECTTEEEEEC---TTCC--EEEEEEEEEEEEEEECC-
T ss_pred EECCCCCcceeCCCCCEEEEEEeCEEEEEECCCcEEEECCCCEEEEC---CCCc--EeeEeCCCeEEEEEECCC
Confidence 34455544444443489999999999999887345679999876321 2333 334444667777776543
No 113
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=84.64 E-value=2.8 Score=29.91 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=43.4
Q ss_pred cceeEEeCCCCeEEecCCC-CCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEE
Q psy18137 91 AMFPVNCLPGESIITQGDE-GDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGL 165 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~-~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i 165 (320)
.+....+.+|..+-..-.. ...+++|++|++.+...+.....+++|+++-- -.+.++.......+++.++.+
T Consensus 40 ~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~i---~~~~~H~~~n~~~~~~~~l~v 112 (125)
T 3h8u_A 40 VVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAIA---KPGQVHGAMNSGPEPFIFVSV 112 (125)
T ss_dssp EEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCEEEEETTEEEEE---CTTCCCEEEECSSSCEEEEEE
T ss_pred EEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCEEEE---CCCCEEEeEeCCCCCEEEEEE
Confidence 4556778888876443333 36788999999999873335567889987631 123344333333344555443
No 114
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=83.65 E-value=4.6 Score=31.50 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=43.6
Q ss_pred ceeEEeCCCCeEE---ecCCCCCeEEEEEeeEEEEEEcCE---EEEecCCCCeeehhhhhcCCCcceEEeee---ceEEE
Q psy18137 92 MFPVNCLPGESII---TQGDEGDNFYVIDQGEVEVYVNNE---LVTSVGEGGSFGELALIYGTPRAATVRAK---TDVKL 162 (320)
Q Consensus 92 ~~~~~~~~g~~I~---~~G~~~~~~yiI~~G~v~v~~~~~---~~~~~~~G~~fGe~~ll~~~~~~~tv~a~---~~~~~ 162 (320)
+....+.+|...- .....++.+++|++|++.+..++. ....+++||++--. .+.++ .+... +++.+
T Consensus 119 ~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~~---~~~~H--~~~n~~~~~~~~~ 193 (198)
T 2bnm_A 119 PLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVE---EHVPH--AFTAAKGTGSAKL 193 (198)
T ss_dssp EEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEEC---TTCCE--EEEESTTSCCEEE
T ss_pred EEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEeC---CCCce--EEEecCCCCCeEE
Confidence 3445778887653 123345789999999999998772 55679999987421 13333 34443 45666
Q ss_pred EEE
Q psy18137 163 WGL 165 (320)
Q Consensus 163 ~~i 165 (320)
+.+
T Consensus 194 l~v 196 (198)
T 2bnm_A 194 IAV 196 (198)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 115
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=83.45 E-value=9.1 Score=26.54 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=41.4
Q ss_pred eeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEE
Q psy18137 212 PVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKL 289 (320)
Q Consensus 212 ~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i 289 (320)
...+.+|..+-.--.....+++|++|.+.+... + ....+.+||++= + +......+.+.+++.++.+
T Consensus 44 ~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~----~---~~~~l~~Gd~~~----i-p~~~~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 44 VFSLDKGQEIGRHSSPGDAMVTILSGLAEITID----Q---ETYRVAEGQTIV----M-PAGIPHALYAVEAFQMLLV 109 (115)
T ss_dssp EEEECTTCEEEEECCSSEEEEEEEESEEEEEET----T---EEEEEETTCEEE----E-CTTSCEEEEESSCEEEEEE
T ss_pred EEEECCCCccCCEECCCcEEEEEEeCEEEEEEC----C---EEEEECCCCEEE----E-CCCCCEEEEECCCceEEEE
Confidence 345667766533333456899999999998742 2 246789999882 2 2223345566667766654
No 116
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=83.08 E-value=3.3 Score=31.21 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=35.8
Q ss_pred cceeEEeCCCCe--EEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 91 AMFPVNCLPGES--IITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 91 ~~~~~~~~~g~~--I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
.+....+.+|.. -.+.....+.+++|++|++.+..+++. ..+++||++
T Consensus 47 ~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~-~~l~~Gd~i 96 (162)
T 3l2h_A 47 GIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQ-YPIAPGDFV 96 (162)
T ss_dssp EEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTEE-EEECTTCEE
T ss_pred EEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCEE-EEeCCCCEE
Confidence 344567888873 233333568999999999999988864 679999987
No 117
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=82.65 E-value=8.3 Score=25.90 Aligned_cols=47 Identities=28% Similarity=0.289 Sum_probs=33.9
Q ss_pred ceeEEeCCCCeEEecCCC-CCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 92 MFPVNCLPGESIITQGDE-GDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~-~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
+....+.+|..+-..-.. .+.+++|++|.+.+..+++ ...+.+|+.+
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~-~~~l~~Gd~~ 77 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE-EALLAPGMAA 77 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE-EEEECTTCEE
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEE
Confidence 345677888776432223 3579999999999988774 5678999876
No 118
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=82.51 E-value=7.1 Score=32.37 Aligned_cols=78 Identities=21% Similarity=0.208 Sum_probs=59.2
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEec-CCCCeeehh---hhhcCCCcceEEeeeceEEEEEEc
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSV-GEGGSFGEL---ALIYGTPRAATVRAKTDVKLWGLD 166 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~-~~G~~fGe~---~ll~~~~~~~tv~a~~~~~~~~i~ 166 (320)
.+....+++|+.+--.-+.-+-..|++.|.+.|..++.....+ ...+.|... ++.-.....+++.|.++++++..+
T Consensus 30 ~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~~v~s 109 (270)
T 2qjv_A 30 GFDVWQLXAGESITLPSDERERCLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLELAVCS 109 (270)
T ss_dssp EEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEEEEEE
T ss_pred EEEEEEecCCCEEEecCCCcEEEEEEecceEEEEECCEEEeccccccccccCCCCcEEEECCCCEEEEEecCCceEEEEe
Confidence 4667788999998877776677888999999999999866653 466778764 334455558899999999988766
Q ss_pred hh
Q psy18137 167 RD 168 (320)
Q Consensus 167 ~~ 168 (320)
..
T Consensus 110 Ap 111 (270)
T 2qjv_A 110 AP 111 (270)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 119
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=82.14 E-value=4.3 Score=30.14 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=44.5
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEE
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGL 165 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i 165 (320)
+....+.+|..+-..--....+++|++|.+.+..+++....+.+|+++-- -.+.++.......+++.++.+
T Consensus 50 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~i~i---p~~~~H~~~n~~~~~~~~l~v 120 (147)
T 2f4p_A 50 VYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKPARILKKGDVVEI---PPNVVHWHGAAPDEELVHIGI 120 (147)
T ss_dssp EEEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSCCEEEETTCEEEE---CTTCCEEEEEBTTBCEEEEEE
T ss_pred EEEEEECCCCccCceECCCceEEEEEeCEEEEEECCEEEEEECCCCEEEE---CCCCcEEeEeCCCCCEEEEEE
Confidence 34566778876533223347899999999999988865467889987632 123344333333345555554
No 120
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=81.39 E-value=11 Score=26.12 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=41.6
Q ss_pred eeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEE
Q psy18137 212 PVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKL 289 (320)
Q Consensus 212 ~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i 289 (320)
...+.+|..+-.--.....+++|++|.+.+... + ....+.+||++ +.+......+.+.+++.++.+
T Consensus 38 ~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~----~---~~~~l~~Gd~~-----~ip~~~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 38 KIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVD----G---VIKVLTAGDSF-----FVPPHVDHGAVCPTGGILIDT 103 (116)
T ss_dssp EEEECTTEEEEEECCSSEEEEEEEEECEEEEET----T---EEEEECTTCEE-----EECTTCCEEEEESSCEEEEEE
T ss_pred EEEECCCCcCCcEECCcceEEEEEeeEEEEEEC----C---EEEEeCCCCEE-----EECcCCceeeEeCCCcEEEEE
Confidence 345667765422222356789999999998742 2 25679999997 223223445666668777766
No 121
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=81.36 E-value=0.89 Score=32.97 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=33.5
Q ss_pred eEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 94 PVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 94 ~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
.-...+|..-.+..+ .+.+++|++|++.+..++.....+++||++-
T Consensus 53 ~w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~~ 98 (123)
T 3bcw_A 53 VWESTSGSFQSNTTG-YIEYCHIIEGEARLVDPDGTVHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEEECCCTT-EEEEEEEEEEEEEEECTTCCEEEEETTCEEE
T ss_pred EEEECCCceeeEcCC-CcEEEEEEEEEEEEEECCCeEEEECCCCEEE
Confidence 345566766655443 3899999999999998444556799999875
No 122
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=81.24 E-value=10 Score=28.74 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=36.0
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
+....+.+|..+-..--....+++|++|.+.+..+++ ...+.+|+++-
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~-~~~l~~Gd~i~ 105 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR-VEPLTPLDCVY 105 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTE-EEEECTTCEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCE-EEEECCCCEEE
Confidence 4556778887654333347889999999999998886 56789998763
No 123
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=80.84 E-value=5.4 Score=30.22 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=36.6
Q ss_pred cceeEEeCCCCeE--EecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 91 AMFPVNCLPGESI--ITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 91 ~~~~~~~~~g~~I--~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
.+....+.+|... .+.....+.+++|++|++.+..+++ ...+.+|+++-
T Consensus 44 ~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~-~~~l~~GD~i~ 94 (163)
T 3i7d_A 44 GVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQG-EHPMVPGDCAA 94 (163)
T ss_dssp EEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTE-EEEECTTCEEE
T ss_pred EEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCE-EEEeCCCCEEE
Confidence 3446778888854 3444444799999999999998886 56799998764
No 124
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=79.94 E-value=5.1 Score=27.60 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=35.4
Q ss_pred ceeEEeCCCCeEEec--CCC-CCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 92 MFPVNCLPGESIITQ--GDE-GDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~--G~~-~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
+....+.+|..+-.. -.. ...+++|++|++.+..+++ ...+.+|+.+=
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGH-TQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTE-EEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEEE
Confidence 445678888876433 223 6789999999999988775 46689998763
No 125
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=79.71 E-value=14 Score=26.23 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=31.5
Q ss_pred eeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 212 PVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 212 ~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
...+.+|..+-.- ...+.+++|++|++.+... + ....+.+||++
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~----g---~~~~l~~GD~v 87 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVSTD----G---ETVTAGPGEIV 87 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEET----T---EEEEECTTCEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEEC----C---EEEEECCCCEE
Confidence 3456677654332 3678999999999999741 2 25679999998
No 126
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=79.01 E-value=4.7 Score=30.40 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=32.5
Q ss_pred eeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 93 FPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 93 ~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
....+.+|..+-..-.....+++|++|++.+..+++ ...+.+|+++
T Consensus 47 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g~-~~~l~~Gd~i 92 (156)
T 3kgz_A 47 RYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLVGET-ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEETTE-EEEEETTCEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEE
Confidence 344566666543333345778999999999998885 5668899876
No 127
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=78.30 E-value=8.6 Score=26.29 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=40.2
Q ss_pred ceeEEeCCCCeEEe-cCCCCCeE-EEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEE
Q psy18137 92 MFPVNCLPGESIIT-QGDEGDNF-YVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWG 164 (320)
Q Consensus 92 ~~~~~~~~g~~I~~-~G~~~~~~-yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~ 164 (320)
+....+.+|..+-. ..+....+ ++|++|.+.+..++.....+.+|+++-- +......+.+.+++.++.
T Consensus 35 ~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~~~l~~Gd~~~i-----p~~~~H~~~~~~~~~~l~ 104 (110)
T 2q30_A 35 IVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAVIPAPRGAVLVA-----PISTPHGVRAVTDMKVLV 104 (110)
T ss_dssp EEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCEEEECTTEEEEE-----ETTSCEEEEESSSEEEEE
T ss_pred EEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEEEEECCCCEEEe-----CCCCcEEEEEcCCcEEEE
Confidence 34556788876643 22222455 7999999999886324567889987632 122233444555555443
No 128
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=77.74 E-value=7.8 Score=29.06 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=25.8
Q ss_pred CCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 109 EGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 109 ~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
..+.+++|++|++.+..+++ ...+++||++=
T Consensus 83 ~~eE~~yVLeG~~~l~i~g~-~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIIIDGR-KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEETTE-EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEECCE-EEEEcCCCEEE
Confidence 46789999999999998774 57799999874
No 129
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=77.66 E-value=11 Score=28.87 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=41.6
Q ss_pred eEEccCCCCCeEEEEEecEEEEEEeccCC-CccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehH
Q psy18137 220 AIVRQGQPGDDFYIIVEGTALVLQNTVEE-ESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRA 292 (320)
Q Consensus 220 ~I~~~g~~~~~~yiI~~G~v~v~~~~~~~-~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~ 292 (320)
..+. -+..+.+|++++|.+.+.....+. +....-..+++||+| ++-. .-..+-++..++..+.|.+.
T Consensus 47 ~D~H-~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmf----llP~-gvpHsP~r~~e~v~lviErk 114 (176)
T 1zvf_A 47 TDYH-INPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSY----LLPG-NVPHSPVRFADTVGIVVEQD 114 (176)
T ss_dssp SCEE-ECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEE----EECT-TCCEEEEECTTCEEEEEEEC
T ss_pred CcCc-CCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEE----EcCC-CCCcCCcccCCcEEEEEEec
Confidence 4444 455678999999999988654220 113456779999999 2322 22234444567777777664
No 130
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=77.36 E-value=3.7 Score=32.79 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHhcCccCCCCCHHHH-HHHHh-cceeEEeCCCC-----------eEEecC-------CCCCeEEEEE
Q psy18137 58 PKDYKTMAALSKAIAKNVLFSHLDENTR-SDIFD-AMFPVNCLPGE-----------SIITQG-------DEGDNFYVID 117 (320)
Q Consensus 58 ~k~~~~~~~i~~~l~~~~~f~~l~~~~~-~~l~~-~~~~~~~~~g~-----------~I~~~G-------~~~~~~yiI~ 117 (320)
+....-.+.|..+.-.+..-+..+.... ..+.+ ......+-++- +++..| .+.+.+|+|+
T Consensus 80 ~~~~~L~~al~~~~~~L~Wr~~y~~~~~~~~f~~~~a~~elvGP~g~~~s~~l~lG~v~l~PG~~yP~HsHp~EEiy~VL 159 (217)
T 4b29_A 80 DQSQPLRDALVAAAPHVEWRHSYTEAEVGRDFLNRFGWFELAGPSGHFLTQSLRVTVGYWGPGLDYGWHEHLPEELYSVV 159 (217)
T ss_dssp TTTHHHHHHHHHHGGGSBCBCCSCHHHHCHHHHHHEEEEEEEETTSSEECSSCEEEEEEECSSCEEEEEECSSEEEEEEE
T ss_pred ccHHHHHHHHHHhCCCCeEeeccCCCCcChhHHhCceEEEEECCCCCCCCCeEEEEEEEECCCCcCCCCCCCCceEEEEE
Confidence 4555556666666667777777665431 12222 33333333322 333333 4578999999
Q ss_pred eeEEEEEEcCEEEEecCCCCeee
Q psy18137 118 QGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 118 ~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
+|.+++..++.....+++|+.+=
T Consensus 160 sG~~e~~v~~g~~~~l~pGd~v~ 182 (217)
T 4b29_A 160 SGRALFHLRNAPDLMLEPGQTRF 182 (217)
T ss_dssp EECEEEEETTSCCEEECTTCEEE
T ss_pred eCCEEEEECCCCEEecCCCCEEE
Confidence 99999998877778899998763
No 131
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=77.27 E-value=9.8 Score=27.98 Aligned_cols=60 Identities=10% Similarity=0.129 Sum_probs=40.2
Q ss_pred EecCCCCCeEEEEEeeEEEEEEcC-------EEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchh
Q psy18137 104 ITQGDEGDNFYVIDQGEVEVYVNN-------ELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRD 168 (320)
Q Consensus 104 ~~~G~~~~~~yiI~~G~v~v~~~~-------~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~ 168 (320)
++..+..|.+|+|++|.+.+...+ .....+++|+++-- ..---..-.|..+|.++.|...
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvV-----PkGveH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNV-----PAECWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEE-----CTTCEEEEEECTTCEEEEEEES
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEe-----CCCccCcccCCCceEEEEEEeC
Confidence 455667899999999999987542 23566899987642 1111244556677888877655
No 132
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=76.06 E-value=18 Score=25.48 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=40.5
Q ss_pred eeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecC-eEEEEE
Q psy18137 212 PVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGP-LKCVKL 289 (320)
Q Consensus 212 ~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~-~~v~~i 289 (320)
...+.+|..+-.--.....+++|++|.+.+... + ....+.+||++= + .......+.+.++ +.++.+
T Consensus 45 ~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~----~---~~~~l~~Gd~~~----i-p~~~~H~~~~~~~~~~~l~v 111 (126)
T 4e2g_A 45 WVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIG----E---ETRVLRPGMAYT----I-PGGVRHRARTFEDGCLVLDI 111 (126)
T ss_dssp EEEECTTCEEEEECCSSEEEEEEEEECEEEEET----T---EEEEECTTEEEE----E-CTTCCEEEECCTTCEEEEEE
T ss_pred EEEECCCCcCCCccCCCceEEEEEEeEEEEEEC----C---EEEEeCCCCEEE----E-CCCCcEEeEECCCCEEEEEE
Confidence 456667766533333457899999999998742 1 247799999872 2 2223344555555 665544
No 133
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=76.04 E-value=5.6 Score=26.85 Aligned_cols=57 Identities=11% Similarity=0.243 Sum_probs=37.0
Q ss_pred ecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEch
Q psy18137 105 TQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDR 167 (320)
Q Consensus 105 ~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~ 167 (320)
+..+....+++|++|.+.+..+++ ...+.+|+.+- .+......+.+.+++.++.++.
T Consensus 45 H~H~~~~e~~~v~~G~~~~~~~~~-~~~l~~Gd~~~-----ip~~~~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 45 HEHADTDEVFIVMEGTLQIAFRDQ-NITLQAGEMYV-----IPKGVEHKPMAKEECKIMIIEP 101 (102)
T ss_dssp BCCTTCCEEEEEEESEEEEECSSC-EEEEETTEEEE-----ECTTCCBEEEEEEEEEEEEEEE
T ss_pred eeCCCCcEEEEEEeCEEEEEECCE-EEEEcCCCEEE-----ECCCCeEeeEcCCCCEEEEEEc
Confidence 344434789999999999987775 45578888652 2222233444556788777653
No 134
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=75.73 E-value=2.7 Score=29.61 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=32.2
Q ss_pred eEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 94 PVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 94 ~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
...+.+|..+-..-.....+++|++|.+.+..+++....+.+|+.+
T Consensus 31 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~~~l~~Gd~i 76 (117)
T 2b8m_A 31 HIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNIV 76 (117)
T ss_dssp EEEEETTCBCCCEECSSCEEEEEEESEEEEEETTSCCEEEETTCEE
T ss_pred EEEECCCCcCCCEeCCCcEEEEEEeCEEEEEECCEEEEEeCCCCEE
Confidence 4456666654222223568899999999999888665478899876
No 135
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=75.71 E-value=2.5 Score=30.26 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=35.2
Q ss_pred eEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 94 PVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 94 ~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
.-...+|..-+...+ .+.++.|++|.+.+..++.....+++||.|-
T Consensus 46 vWe~tPG~~~~~~~~-~~E~~~iLeG~~~lt~ddG~~~~l~aGD~~~ 91 (116)
T 3es4_A 46 VWMAEPGIYNYAGRD-LEETFVVVEGEALYSQADADPVKIGPGSIVS 91 (116)
T ss_dssp EEEECSEEEEECCCS-EEEEEEEEECCEEEEETTCCCEEECTTEEEE
T ss_pred EEecCCceeECeeCC-CcEEEEEEEeEEEEEeCCCeEEEECCCCEEE
Confidence 346677776666533 3589999999999998766677899999875
No 136
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=74.71 E-value=14 Score=30.04 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=38.1
Q ss_pred cceeEEeCCCCeEEe-cCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 91 AMFPVNCLPGESIIT-QGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~-~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
.+...++++|..+-. .-...++.++|++|++.+..+++. ..+++||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~~-~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENY-YPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTEE-EEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCEE-EEcCCCCEEE
Confidence 566778899987653 334467899999999999988755 4799999864
No 137
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=74.51 E-value=3.8 Score=31.64 Aligned_cols=50 Identities=8% Similarity=0.202 Sum_probs=37.2
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEc---CEEEEecCCCCeee
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVN---NELVTSVGEGGSFG 140 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~---~~~~~~~~~G~~fG 140 (320)
.+....+.+|...-......+.+++|++|++.+... +.....+++||++-
T Consensus 42 ~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~ 94 (178)
T 1dgw_A 42 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEE
T ss_pred EEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 455677888877655444468999999999998763 34577899999874
No 138
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=74.39 E-value=2.9 Score=31.97 Aligned_cols=31 Identities=26% Similarity=0.192 Sum_probs=26.1
Q ss_pred CCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 109 EGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 109 ~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
.++.+++|++|.+.+...++ ...+.+|++|-
T Consensus 109 ~gEE~~yVLeG~v~vtl~g~-~~~L~~Gds~~ 139 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVCKN-KFLSVKGSTFQ 139 (166)
T ss_dssp SEEEEEEEEESEEEEEETTE-EEEEETTCEEE
T ss_pred CceEEEEEEEeEEEEEECCE-EEEEcCCCEEE
Confidence 45789999999999999885 45799999875
No 139
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=74.02 E-value=16 Score=27.97 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=41.0
Q ss_pred eEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEec-CeEEEEEehH
Q psy18137 220 AIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKG-PLKCVKLDRA 292 (320)
Q Consensus 220 ~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~-~~~v~~i~~~ 292 (320)
..+. -++.+.+|++++|.+.+.... +++ ..-..+++|++| +-...-..+-++.. ++.++.|.+.
T Consensus 48 ~d~H-~h~~dE~FyvlkG~m~i~v~d--~g~-~~~v~l~eGE~f-----~lP~gvpH~P~r~~~e~~~lviE~~ 112 (174)
T 1yfu_A 48 TDYH-DDPLEEFFYQLRGNAYLNLWV--DGR-RERADLKEGDIF-----LLPPHVRHSPQRPEAGSACLVIERQ 112 (174)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEE--TTE-EEEEEECTTCEE-----EECTTCCEEEEBCCTTCEEEEEEEC
T ss_pred ccCc-CCCCceEEEEEeeEEEEEEEc--CCc-eeeEEECCCCEE-----EeCCCCCcCccccCCCCEEEEEEeC
Confidence 4444 336689999999999987543 222 446779999999 22222233444555 7777777654
No 140
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=73.40 E-value=4.6 Score=30.81 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=34.0
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
+....+.+|..+-..-.....+++|++|++.+..+++ ...+.+|+++=
T Consensus 55 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g~-~~~l~~GD~i~ 102 (166)
T 3jzv_A 55 LRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRA-VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEETTE-EEEECTTCEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEEE
Confidence 3445667776553333345788999999999998875 56789999763
No 141
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=73.14 E-value=2.6 Score=29.72 Aligned_cols=33 Identities=9% Similarity=0.217 Sum_probs=26.8
Q ss_pred CCCCeEEEEEeeEEEEEEcCEEE-EecCCCCeee
Q psy18137 108 DEGDNFYVIDQGEVEVYVNNELV-TSVGEGGSFG 140 (320)
Q Consensus 108 ~~~~~~yiI~~G~v~v~~~~~~~-~~~~~G~~fG 140 (320)
...+.+++|++|++.+..+++.. ..+++||++-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSSCEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEEEEEECCCCEEE
Confidence 45678999999999999887642 6799999874
No 142
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=72.80 E-value=9.4 Score=29.53 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=32.5
Q ss_pred eEEeCCCCeEEe-cC-CCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 94 PVNCLPGESIIT-QG-DEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 94 ~~~~~~g~~I~~-~G-~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
...+.+|..... .. ...+.+++|++|++.+..+++ ...+.+||++-
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~-~~~l~~GD~i~ 155 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQ-WHELQQGEHIR 155 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTE-EEEECTTCEEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCE-EEEeCCCCEEE
Confidence 345667765542 22 234789999999999998775 45799999863
No 143
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=71.20 E-value=14 Score=27.58 Aligned_cols=52 Identities=6% Similarity=0.135 Sum_probs=33.0
Q ss_pred CCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEe
Q psy18137 227 PGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLD 290 (320)
Q Consensus 227 ~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~ 290 (320)
..+.+++|++|++.+.. ++ ....+++||.| +.......+....++|.++++-
T Consensus 83 ~~eE~~yVLeG~~~l~i----~g---~~~~l~~GD~i-----~iP~G~~h~~~n~~~a~~l~V~ 134 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII----DG---RKVSASSGELI-----FIPKGSKIQFSVPDYARFIYVT 134 (151)
T ss_dssp SSEEEEEEEEEEEEEEE----TT---EEEEEETTCEE-----EECTTCEEEEEEEEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE----CC---EEEEEcCCCEE-----EECCCCEEEEEeCCCEEEEEEE
Confidence 35678889999999984 22 25779999998 2232233444444666665553
No 144
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=71.16 E-value=16 Score=29.55 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=35.0
Q ss_pred eEEeCC-CCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 94 PVNCLP-GESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 94 ~~~~~~-g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
...+++ |..+-..--....+++|++|.+.+..+++.. .+.+||++-
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~-~l~~Gd~i~ 195 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGCTV-EMKFGTAYF 195 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEETTEEE-EECTTCEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEECCEEE-EECCCCEEE
Confidence 456888 7766544444678999999999999988654 599999864
No 145
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=70.65 E-value=7.1 Score=27.74 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=33.1
Q ss_pred ceeEEeCCCCeE--EecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 92 MFPVNCLPGESI--ITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 92 ~~~~~~~~g~~I--~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
+....+.+|..+ .+..+..+.+|+|++|.+.+..+++. ..+.+|+.+=
T Consensus 28 ~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~~-~~l~~Gd~i~ 77 (125)
T 3cew_A 28 VSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGEK-IELQAGDWLR 77 (125)
T ss_dssp EEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTEE-EEEETTEEEE
T ss_pred EEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCEE-EEeCCCCEEE
Confidence 445567787765 23333345577799999999988754 5688888763
No 146
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=70.57 E-value=16 Score=30.35 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=44.5
Q ss_pred eEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehH
Q psy18137 220 AIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRA 292 (320)
Q Consensus 220 ~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~ 292 (320)
..++ .+..+.+|++++|...+.... +++ ..-..+++|++| ++ ...-..+=++..+|.++.|.+.
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~d--~g~-~~~V~i~eGemf----ll-P~gv~HsP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVLE--QGK-HRDVVIRQGEIF----LL-PARVPHSPQRFANTVGLVVERR 107 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEE--TTE-EEEEEECTTEEE----EE-CTTCCEEEEECTTCEEEEEEEC
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEEe--CCc-eeeEEECCCeEE----Ee-CCCCCcCCcccCCeEEEEEeec
Confidence 5566 667789999999999987553 232 445779999999 23 3333345555778888888754
No 147
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=69.94 E-value=16 Score=26.50 Aligned_cols=63 Identities=10% Similarity=0.068 Sum_probs=36.7
Q ss_pred eEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEE
Q psy18137 213 VSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKL 289 (320)
Q Consensus 213 ~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i 289 (320)
..+.+|..-. ....+.+++|++|++.+... + ....+.+||.|- + ......+....+++.++++
T Consensus 62 ~~~~pG~~~~--h~~~~E~~~VLeG~~~l~~~----g---~~~~l~~GD~i~----~-p~g~~h~~~~~~~~~~l~v 124 (133)
T 2pyt_A 62 MQWDNAFFPW--TLNYDEIDMVLEGELHVRHE----G---ETMIAKAGDVMF----I-PKGSSIEFGTPTSVRFLYV 124 (133)
T ss_dssp EEEEEEEEEE--ECSSEEEEEEEEEEEEEEET----T---EEEEEETTCEEE----E-CTTCEEEEEEEEEEEEEEE
T ss_pred EEECCCCccc--cCCCCEEEEEEECEEEEEEC----C---EEEEECCCcEEE----E-CCCCEEEEEeCCCEEEEEE
Confidence 3455663222 23467899999999998742 2 245799999983 2 2222233344556655543
No 148
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=69.30 E-value=9.8 Score=27.12 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=31.7
Q ss_pred eeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 93 FPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 93 ~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
....+.+|..+-..--....+++|++|.+.+..+++. ..+.+|+.+
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~-~~l~~Gd~i 96 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGE-ETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEECSSCE-EEEETTEEE
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEECCEE-EEECCCCEE
Confidence 3455666655432222367899999999999887654 568888876
No 149
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=69.20 E-value=24 Score=24.10 Aligned_cols=62 Identities=11% Similarity=0.003 Sum_probs=38.4
Q ss_pred eeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEE
Q psy18137 212 PVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKC 286 (320)
Q Consensus 212 ~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v 286 (320)
...+.+|..-.. .....+++|++|++.+... ++. ...+.+||++ +.+.....++...+++..
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~---~g~---~~~l~~GD~i-----~ip~g~~H~~~n~~~~~~ 96 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTTE---DGK---KYVIEKGDLV-----TFPKGLRCRWKVLEPVRK 96 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEET---TCC---EEEEETTCEE-----EECTTCEEEEEEEEEEEE
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEEC---CCC---EEEECCCCEE-----EECCCCcEEEEeCCCeeE
Confidence 445666665443 4467899999999998742 121 4679999998 223333445555555433
No 150
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=69.03 E-value=10 Score=27.34 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=33.5
Q ss_pred ceeEEeCCCCeEEecCCC-CCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 92 MFPVNCLPGESIITQGDE-GDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~-~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
+....+++|..+-..--. ...+++|++|++.+..+++ ...+.+|+++
T Consensus 59 ~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~-~~~l~~Gd~i 106 (133)
T 1o4t_A 59 FARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGK-DVPIKAGDVC 106 (133)
T ss_dssp EEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTE-EEEEETTEEE
T ss_pred EEEEEECCCCccCceECCCccEEEEEEeCEEEEEECCE-EEEeCCCcEE
Confidence 345677888765322222 3689999999999998875 4568899876
No 151
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=68.60 E-value=9 Score=25.75 Aligned_cols=54 Identities=17% Similarity=0.304 Sum_probs=34.5
Q ss_pred CCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEeh
Q psy18137 226 QPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDR 291 (320)
Q Consensus 226 ~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~ 291 (320)
+....+++|++|.+.+... + ....+.+||++ ++ +.....++.+.+++.++.|+.
T Consensus 48 ~~~~e~~~v~~G~~~~~~~----~---~~~~l~~Gd~~----~i-p~~~~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 48 ADTDEVFIVMEGTLQIAFR----D---QNITLQAGEMY----VI-PKGVEHKPMAKEECKIMIIEP 101 (102)
T ss_dssp TTCCEEEEEEESEEEEECS----S---CEEEEETTEEE----EE-CTTCCBEEEEEEEEEEEEEEE
T ss_pred CCCcEEEEEEeCEEEEEEC----C---EEEEEcCCCEE----EE-CCCCeEeeEcCCCCEEEEEEc
Confidence 3336899999999988632 1 14668899987 23 222233444456888887764
No 152
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=65.71 E-value=8.6 Score=29.46 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=36.6
Q ss_pred eEEecCCCCCeEEEEEeeEEEEEEcC-------EEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchh
Q psy18137 102 SIITQGDEGDNFYVIDQGEVEVYVNN-------ELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRD 168 (320)
Q Consensus 102 ~I~~~G~~~~~~yiI~~G~v~v~~~~-------~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~ 168 (320)
..++ -++.+.+|++++|.+.+-..+ .....+++|++|=-- .+.++ +-++..++..+.+.+.
T Consensus 47 ~D~H-~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP---~gvpH--sP~r~~e~v~lviErk 114 (176)
T 1zvf_A 47 TDYH-INPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLP---GNVPH--SPVRFADTVGIVVEQD 114 (176)
T ss_dssp SCEE-ECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEEC---TTCCE--EEEECTTCEEEEEEEC
T ss_pred CcCc-CCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcC---CCCCc--CCcccCCcEEEEEEec
Confidence 4444 455679999999999886533 145678999988422 12222 2222345555555443
No 153
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=65.19 E-value=8.2 Score=29.01 Aligned_cols=47 Identities=9% Similarity=0.205 Sum_probs=33.4
Q ss_pred ceeEEeCCCCeEE-ecCCCCCeEEEEEeeEEEEEEcCE--------EEEecCCCCee
Q psy18137 92 MFPVNCLPGESII-TQGDEGDNFYVIDQGEVEVYVNNE--------LVTSVGEGGSF 139 (320)
Q Consensus 92 ~~~~~~~~g~~I~-~~G~~~~~~yiI~~G~v~v~~~~~--------~~~~~~~G~~f 139 (320)
+....+.+|..+- +.. ....+++|++|.+.+...+. ....+.+|+++
T Consensus 43 ~~~~~~~pg~~~~~H~H-~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i 98 (163)
T 1lr5_A 43 VWLQTISPGQRTPIHRH-SCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF 98 (163)
T ss_dssp EEEEEECTTCBCCEEEE-SSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE
T ss_pred EEEEEECCCCcCCCeEC-CCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEE
Confidence 4455677776542 223 35679999999999988771 56679999876
No 154
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=65.04 E-value=24 Score=26.88 Aligned_cols=52 Identities=8% Similarity=-0.055 Sum_probs=33.6
Q ss_pred CCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEE--ecCeEEEEE
Q psy18137 226 QPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA--KGPLKCVKL 289 (320)
Q Consensus 226 ~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a--~~~~~v~~i 289 (320)
..+..+++|++|.+.+... + ....+.+||+|= .......++.- .++|.++.+
T Consensus 108 h~gEE~~yVLeG~v~vtl~----g---~~~~L~~Gds~~-----iP~g~~H~~~N~~d~~Arll~V 161 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTVC----K---NKFLSVKGSTFQ-----IPAFNEYAIANRGNDEAKMFFV 161 (166)
T ss_dssp CSEEEEEEEEESEEEEEET----T---EEEEEETTCEEE-----ECTTCEEEEEECSSSCEEEEEE
T ss_pred CCceEEEEEEEeEEEEEEC----C---EEEEEcCCCEEE-----ECCCCCEEEEECCCCCEEEEEE
Confidence 4557899999999999853 1 256799999983 23223344444 345666654
No 155
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=64.92 E-value=32 Score=26.50 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=33.7
Q ss_pred CCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEe---cCeEEEEE
Q psy18137 227 PGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAK---GPLKCVKL 289 (320)
Q Consensus 227 ~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~---~~~~v~~i 289 (320)
....+++|++|++.+.... ++ ......+.+||++= + +......+... +++.++.+
T Consensus 139 ~~~E~~~Vl~G~~~~~~~~--~~-~~~~~~l~~GD~~~----~-~~~~~H~~~n~~~~~~~~~l~v 196 (198)
T 2bnm_A 139 AGNEFLFVLEGEIHMKWGD--KE-NPKEALLPTGASMF----V-EEHVPHAFTAAKGTGSAKLIAV 196 (198)
T ss_dssp SSCEEEEEEESCEEEEESC--TT-SCEEEEECTTCEEE----E-CTTCCEEEEESTTSCCEEEEEE
T ss_pred CCeEEEEEEeeeEEEEECC--cC-CcccEEECCCCEEE----e-CCCCceEEEecCCCCCeEEEEE
Confidence 3367888999999987432 11 12467899999982 2 22223344444 45776655
No 156
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=64.54 E-value=19 Score=27.60 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=28.2
Q ss_pred eEEecCCCCCeEEEEEeeEEEEEEcC---EEEEecCCCCeee
Q psy18137 102 SIITQGDEGDNFYVIDQGEVEVYVNN---ELVTSVGEGGSFG 140 (320)
Q Consensus 102 ~I~~~G~~~~~~yiI~~G~v~v~~~~---~~~~~~~~G~~fG 140 (320)
..++ -++.+.+|++++|.+.+-..+ .....+++|++|=
T Consensus 48 ~d~H-~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~ 88 (174)
T 1yfu_A 48 TDYH-DDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFL 88 (174)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEE
T ss_pred ccCc-CCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEE
Confidence 4555 336789999999999886533 3567799999884
No 157
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=64.49 E-value=5.7 Score=29.49 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=43.5
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEE--EecCCCCeeehhhhhcCCCcceEEeeeceEEEEEE
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELV--TSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGL 165 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~--~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i 165 (320)
.+....+++|..+-.....+...++|++|++... .+... ..+++|+++=.-. +..+.. +.+.++|.++.+
T Consensus 45 ~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~-~g~~~~~~~~~~Gd~~~~p~---g~~H~p-~~~~e~~~~l~~ 116 (145)
T 2o1q_A 45 WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR-GGKAAGGDTAIAPGYGYESA---NARHDK-TEFPVASEFYMS 116 (145)
T ss_dssp EEEEEEECTTEEECCEEESSCEEEEEEEEEEEET-TCGGGTSEEEESSEEEEECT---TCEESC-CEEEEEEEEEEE
T ss_pred EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc-CCCEecceEeCCCEEEEECc---CCccCC-eECCCCeEEEEE
Confidence 3567889999988766666788899999999842 33222 4556777764322 222221 334556666554
No 158
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=64.32 E-value=16 Score=31.61 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=49.4
Q ss_pred CCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeece-EEEEEEch--hhHHHHh
Q psy18137 100 GESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTD-VKLWGLDR--DSYRRIL 174 (320)
Q Consensus 100 g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~-~~~~~i~~--~~~~~~~ 174 (320)
|+.+-.--...+.+++|++|++.+..++.....+++|++|= .......++.+.++ ..+|.+.. ..+..++
T Consensus 262 g~~~~~h~~~~~~~~~vleG~~~i~i~g~~~~~l~~Gd~~~-----iPag~~h~~~~~~~~~~~l~~~~g~~g~~~~~ 334 (350)
T 1juh_A 262 TVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGDVAF-----IPGGVEFKYYSEAYFSKVLFVSSGSDGLDQNL 334 (350)
T ss_dssp TSCCCCBCCSSCEEEEEEESCEEEEETTSCCEEECTTCEEE-----ECTTCCEEEEESSSSEEEEEEEESSSSHHHHH
T ss_pred CCCCCcccCCCcEEEEEEeeEEEEEECCeEEEEeCCCCEEE-----ECCCCCEEEEecCCeEEEEEEecCccchhhee
Confidence 55555555668999999999999999985567899999773 33334455555544 77777766 6666654
No 159
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=63.75 E-value=17 Score=27.81 Aligned_cols=70 Identities=9% Similarity=0.054 Sum_probs=39.8
Q ss_pred cceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEE
Q psy18137 210 LEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKL 289 (320)
Q Consensus 210 ~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i 289 (320)
+....+.+|...-.-......+++|++|++.+... + + ....|.+||++ . -.+.++.+.-...+++.++.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld--~-g---e~~~L~~GDsi-~---~~g~~H~~~N~g~~~ar~l~V 150 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELD--D-G---AKRTVRQGGII-V---QRGTNHLWRNTTDKPCRIAFI 150 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECG--G-G---CEEEECTTCEE-E---ECSCCBEEECCSSSCEEEEEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEEC--C-C---eEEEECCCCEE-E---eCCCcEEEEeCCCCCEEEEEE
Confidence 34456677654221112234577999999998732 1 1 14679999998 2 234555444333445665554
No 160
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=63.72 E-value=9.9 Score=29.80 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=44.7
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEE
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGL 165 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i 165 (320)
.+....|.+|..+-.....+..+++|++|.+. ++ ...+.+|+++=.- .+..+.......+.|.+|..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~---de--~~~~~~Gd~~~~p---~g~~H~p~a~~~~gc~~l~~ 192 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR---DE--TDRFGAGDIEIAD---QELEHTPVAERGLDCICLAA 192 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE---CS--SSEEETTCEEEEC---SSCCCCCEECSSSCEEEEEE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE---CC--cEEECCCeEEEeC---cCCccCCEeCCCCCEEEEEE
Confidence 45678899999998888889999999999976 21 2457777765321 12233322322667887764
No 161
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=63.12 E-value=39 Score=25.42 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=40.1
Q ss_pred eeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEE-ecCeEEEEEe
Q psy18137 212 PVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA-KGPLKCVKLD 290 (320)
Q Consensus 212 ~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a-~~~~~v~~i~ 290 (320)
...+.+|..+-.--.....+++|++|.+.+... + ....+.+||++= +-.+.+..+.... .+++.+++|-
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~----~---~~~~l~~Gd~i~---ip~~~~H~~~n~~~~~~~~~l~i~ 129 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD----D---RVEPLTPLDCVY---IAPHAWHQIHATGANEPLGFLCIV 129 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEET----T---EEEEECTTCEEE---ECTTCCEEEEEESSSCCEEEEEEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC----C---EEEEECCCCEEE---ECCCCcEEEEeCCCCCCEEEEEEE
Confidence 345566654432223467899999999998742 1 267789999872 1123444433333 3456655553
No 162
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=62.80 E-value=30 Score=23.43 Aligned_cols=45 Identities=9% Similarity=0.188 Sum_probs=31.3
Q ss_pred eeEeCCCCeEEcc--CCC-CCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 212 PVSFQDKEAIVRQ--GQP-GDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 212 ~~~~~~g~~I~~~--g~~-~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
...+.+|..+-.- -.. ...+++|++|.+.+... + ....+.+||++
T Consensus 25 ~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~----~---~~~~l~~Gd~~ 72 (113)
T 2gu9_A 25 EMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD----G---HTQALQAGSLI 72 (113)
T ss_dssp EEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET----T---EEEEECTTEEE
T ss_pred EEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC----C---EEEEeCCCCEE
Confidence 3566777765433 233 57899999999998742 1 25679999987
No 163
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=61.67 E-value=15 Score=30.02 Aligned_cols=153 Identities=12% Similarity=0.113 Sum_probs=77.2
Q ss_pred eeEEeCCCCeEEec-C-CCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchh--
Q psy18137 93 FPVNCLPGESIITQ-G-DEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRD-- 168 (320)
Q Consensus 93 ~~~~~~~g~~I~~~-G-~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~-- 168 (320)
....+++|...-.. . ...+.+++|++|++.+..+++ ...+++||++--. .+.++...-...+.+.++.+.+.
T Consensus 62 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~-~~~L~~Gd~~~~~---~~~~H~~~N~~~~~~~~l~v~~~~~ 137 (261)
T 1rc6_A 62 YLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGK-TFALSEGGYLYCP---PGSLMTFVNAQAEDSQIFLYKRRYV 137 (261)
T ss_dssp EEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTE-EEEEETTEEEEEC---TTCCCEEEECSSSCEEEEEEEEECC
T ss_pred EEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEECCE-EEEECCCCEEEEC---CCCCEEEEeCCCCCEEEEEEEeccc
Confidence 45667777654322 1 224679999999999998875 5679999987522 23333333333345665555321
Q ss_pred hHHHHhhhhhHHHhhHHHHHhhhhhhc--ccCcHHHHhhh-----hc--ccceeEeCCCCeEE-ccCCCCCeEEEEEecE
Q psy18137 169 SYRRILMGSTIRKRKLYEEFLSRVSIL--ESLEKWERLTV-----AD--SLEPVSFQDKEAIV-RQGQPGDDFYIIVEGT 238 (320)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~l~~~~~~~l-----~~--~~~~~~~~~g~~I~-~~g~~~~~~yiI~~G~ 238 (320)
..... .+... ..-...++.. ..-.......+ .. .+....+.+|..+- ........+++|++|+
T Consensus 138 ~~~g~---~p~~~----v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~ 210 (261)
T 1rc6_A 138 PVEGY---APWLV----SGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQ 210 (261)
T ss_dssp CCTTC---CCCCE----EEEGGGSCCC-------CEEEECSCCSTTCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESE
T ss_pred cCCCC---CCceE----EcCHHHCCcccCCCCcceEEEEecCcccCCceEEEEEEECCCCccCcccCCCceEEEEEEEeE
Confidence 11000 00000 0000000000 00000000001 11 13445677776542 2333456899999999
Q ss_pred EEEEEeccCCCccEEEEEeCCCCee
Q psy18137 239 ALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 239 v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
+.+... + ....+.+||++
T Consensus 211 ~~~~i~----~---~~~~l~~GD~i 228 (261)
T 1rc6_A 211 GVYNLD----N---NWIPVKKGDYI 228 (261)
T ss_dssp EEEESS----S---CEEEEETTCEE
T ss_pred EEEEEC----C---EEEEeCCCCEE
Confidence 988732 2 24678999997
No 164
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=60.86 E-value=33 Score=30.16 Aligned_cols=79 Identities=18% Similarity=0.099 Sum_probs=51.9
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEee-eceEEEEEEchhhH
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRA-KTDVKLWGLDRDSY 170 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a-~~~~~~~~i~~~~~ 170 (320)
+....+++|...-..-...+.+|+|++|+..+..++ ....+++||+|-.-. +..+...-.. .+++.++.++-.-+
T Consensus 296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V~g-e~~~~~~GD~~~iP~---g~~H~~~N~g~~e~~~ll~i~D~Pl 371 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGG-KRFDWSEHDIFCVPA---WTWHEHCNTQERDDACLFSFNDFPV 371 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEETT-EEEEECTTCEEEECT---TCCEEEEECCSSCCEEEEEEESHHH
T ss_pred EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEECC-EEEEEeCCCEEEECC---CCeEEeEeCCCCCCeEEEEeeCHHH
Confidence 356677888877655556778999999999877777 456699999875321 2222222222 35688888876655
Q ss_pred HHHh
Q psy18137 171 RRIL 174 (320)
Q Consensus 171 ~~~~ 174 (320)
...+
T Consensus 372 ~~~L 375 (394)
T 3bu7_A 372 MEKL 375 (394)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5544
No 165
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=60.37 E-value=11 Score=27.87 Aligned_cols=48 Identities=17% Similarity=0.123 Sum_probs=33.4
Q ss_pred ceeEEeCCCCeEE-ecCCCCCeEEEEEeeEEEEEEcCEE-----EEecCCCCee
Q psy18137 92 MFPVNCLPGESII-TQGDEGDNFYVIDQGEVEVYVNNEL-----VTSVGEGGSF 139 (320)
Q Consensus 92 ~~~~~~~~g~~I~-~~G~~~~~~yiI~~G~v~v~~~~~~-----~~~~~~G~~f 139 (320)
+....+.+|..+- +.....+.+++|++|.+.+..++.. ...+.+|+++
T Consensus 45 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i 98 (148)
T 2oa2_A 45 VTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAI 98 (148)
T ss_dssp EEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEE
T ss_pred EEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEE
Confidence 3455677777542 2233346899999999999887754 2678899875
No 166
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=60.05 E-value=16 Score=24.88 Aligned_cols=66 Identities=9% Similarity=-0.054 Sum_probs=38.6
Q ss_pred CCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhc-CCCceeEEEEecCeEEEEEehHHH
Q psy18137 217 DKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLL-DRPRAATVVAKGPLKCVKLDRARF 294 (320)
Q Consensus 217 ~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~-~~~~~~tv~a~~~~~v~~i~~~~f 294 (320)
+|.......+....+++|++|.+.+... + ++ ...+.+||++= +. +.++ ++.+.+++.++.+.....
T Consensus 37 ~g~~~~H~H~~~~E~~~Vl~G~~~~~~~--~-~~---~~~l~~Gd~~~----ip~~~~H--~~~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 37 LGDYGWHTHGYSDKVLFAVEGDMAVDFA--D-GG---SMTIREGEMAV----VPKSVSH--RPRSENGCSLVLIELSDP 103 (107)
T ss_dssp EEECCCBCC--CCEEEEESSSCEEEEET--T-SC---EEEECTTEEEE----ECTTCCE--EEEEEEEEEEEEEECC--
T ss_pred CCCCcceeCCCCCEEEEEEeCEEEEEEC--C-Cc---EEEECCCCEEE----ECCCCcE--eeEeCCCeEEEEEECCCc
Confidence 4433333333337899999999998742 1 11 56799999982 22 3333 333446788888776543
No 167
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=59.96 E-value=15 Score=30.57 Aligned_cols=48 Identities=19% Similarity=0.109 Sum_probs=37.6
Q ss_pred cceeEEeCCCCeEEe-cCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 91 AMFPVNCLPGESIIT-QGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~-~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
.+...++++|..|-. .-...++.++|++|+..+..++ ....+++||++
T Consensus 192 ~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~-~~~~v~~GD~~ 240 (278)
T 1sq4_A 192 HVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQ-DWVEVEAGDFM 240 (278)
T ss_dssp EEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETT-EEEEEETTCEE
T ss_pred EEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECC-EEEEeCCCCEE
Confidence 566788999998875 3333467899999999998877 45668999986
No 168
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=59.10 E-value=16 Score=30.17 Aligned_cols=48 Identities=19% Similarity=0.121 Sum_probs=35.8
Q ss_pred ceeEEeCCCCeEEe-cCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 92 MFPVNCLPGESIIT-QGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 92 ~~~~~~~~g~~I~~-~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
+....+++|..+-. .--..+.+++|++|++.+..+++ ...+++||++=
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~-~~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNE-WYPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTE-EEEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECCE-EEEECCCCEEE
Confidence 45567888887633 22246789999999999998885 46789999863
No 169
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=58.46 E-value=20 Score=30.87 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=36.7
Q ss_pred cceeEEeCCCCeEEec-CCCCCeEEEEEeeEEEEEE---cCE-EEEecCCCCeee
Q psy18137 91 AMFPVNCLPGESIITQ-GDEGDNFYVIDQGEVEVYV---NNE-LVTSVGEGGSFG 140 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~-G~~~~~~yiI~~G~v~v~~---~~~-~~~~~~~G~~fG 140 (320)
.+....+.+|..+-.. ....+.+++|++|++.+.. +++ ....+++||+|-
T Consensus 235 ~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 235 TGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEE
T ss_pred eEEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEE
Confidence 3556678888876433 3333899999999999987 554 467899999874
No 170
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=58.05 E-value=18 Score=27.72 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=35.0
Q ss_pred cceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 210 LEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 210 ~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
+....+.+|....--....+.+++|++|++.+......+ .....+.+||++
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~---~~~~~l~~GDv~ 93 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDG---RDTYKLDQGDAI 93 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTE---EEEEEEETTEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCC---cEEEEECCCCEE
Confidence 344567777664333445679999999999987543322 236689999997
No 171
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=57.58 E-value=53 Score=28.51 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=54.9
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHH
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYR 171 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~ 171 (320)
+....+++|+..-..-..+..+|.|++|.-.+..+++. ..+.+||.|---+ -...+..+.+++.++.++-.-+.
T Consensus 281 ~~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I~~~~-~~w~~gD~fvvP~-----w~~h~~~n~~~a~Lf~~~D~Pl~ 354 (368)
T 3nw4_A 281 CEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMNGET-TKLEKGDMFVVPS-----WVPWSLQAETQFDLFRFSDAPIM 354 (368)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEESCEEEEETTEE-EEECTTCEEEECT-----TCCEEEEESSSEEEEEEESHHHH
T ss_pred hheEEECCCCccCCeeccccEEEEEEeCcEEEEECCEE-EEecCCCEEEECC-----CCcEEEEeCCCEEEEEEeCHHHH
Confidence 33556677776655555678999999999999888854 5699999985322 12345566789999998777665
Q ss_pred HHh
Q psy18137 172 RIL 174 (320)
Q Consensus 172 ~~~ 174 (320)
+-+
T Consensus 355 ~~L 357 (368)
T 3nw4_A 355 EAL 357 (368)
T ss_dssp HHT
T ss_pred HHh
Confidence 544
No 172
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=57.38 E-value=58 Score=28.27 Aligned_cols=62 Identities=21% Similarity=0.318 Sum_probs=44.8
Q ss_pred CCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEehHHHHHhhc
Q psy18137 226 QPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLG 299 (320)
Q Consensus 226 ~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~~~~f~~ll~ 299 (320)
..+..+|.|.+|+-.+... + ......+||.| ....-...+..+.+++.++.++-.-+.+-|+
T Consensus 297 ht~s~Vy~V~eG~G~~~I~----~---~~~~w~~gD~f-----vvP~w~~h~~~n~~~a~Lf~~~D~Pl~~~LG 358 (368)
T 3nw4_A 297 EVGSTVFQVFEGAGAVVMN----G---ETTKLEKGDMF-----VVPSWVPWSLQAETQFDLFRFSDAPIMEALS 358 (368)
T ss_dssp ESSCEEEEEEESCEEEEET----T---EEEEECTTCEE-----EECTTCCEEEEESSSEEEEEEESHHHHHHTT
T ss_pred ccccEEEEEEeCcEEEEEC----C---EEEEecCCCEE-----EECCCCcEEEEeCCCEEEEEEeCHHHHHHhC
Confidence 3456899999999887642 2 25678999998 2233345667778899999998877666654
No 173
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=57.30 E-value=22 Score=30.08 Aligned_cols=48 Identities=10% Similarity=0.152 Sum_probs=35.8
Q ss_pred ceeEEeCCCCeE-EecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 92 MFPVNCLPGESI-ITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 92 ~~~~~~~~g~~I-~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
+....+.+|... .+.....+.+++|++|++.+..+++. ..+.+||++-
T Consensus 48 ~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~-~~l~~Gd~~~ 96 (337)
T 1y3t_A 48 IVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGER-YLLISGDYAN 96 (337)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTEE-EEECTTCEEE
T ss_pred EEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEECCEE-EEECCCCEEE
Confidence 345567888765 34444378999999999999987754 6799999764
No 174
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=55.61 E-value=70 Score=27.51 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=48.8
Q ss_pred eeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchhhHHH
Q psy18137 93 FPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRR 172 (320)
Q Consensus 93 ~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~~~~ 172 (320)
....+++|...-..-.....+|+|++|+..+..++ ....+.+||.|---. +. ...+.+.+++.++++.-.-+.+
T Consensus 271 ~~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v~~-~~~~~~~GD~~~vP~---~~--~H~~~n~e~~~l~~~~d~p~~~ 344 (354)
T 2d40_A 271 FLQLLPKGFASRVARTTDSTIYHVVEGSGQVIIGN-ETFSFSAKDIFVVPT---WH--GVSFQTTQDSVLFSFSDRPVQE 344 (354)
T ss_dssp EEEEECTTCBCCCBEESSCEEEEEEEEEEEEEETT-EEEEEETTCEEEECT---TC--CEEEEEEEEEEEEEEESHHHHH
T ss_pred EEEEECCCCCCCceecCCcEEEEEEeCeEEEEECC-EEEEEcCCCEEEECC---CC--eEEEEeCCCEEEEEEcCHHHHH
Confidence 35577777765443344568999999999999877 556799999875322 12 2334445778888875554433
No 175
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=55.36 E-value=17 Score=28.03 Aligned_cols=38 Identities=13% Similarity=0.315 Sum_probs=31.4
Q ss_pred cCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEE
Q psy18137 73 KNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVI 116 (320)
Q Consensus 73 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI 116 (320)
.+|.|.+++..+..+++.. ..|++|+++-..++++-+.
T Consensus 13 ~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit 50 (178)
T 2xp1_A 13 KHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLV 50 (178)
T ss_dssp GSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEE
T ss_pred cCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEE
Confidence 6799999999999888877 2599999999988764433
No 176
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=54.97 E-value=19 Score=25.94 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=28.3
Q ss_pred EEeCCCCeEE-ecCCCCCeEEEEEeeEEEEE--EcCEEEEecCCCCeee
Q psy18137 95 VNCLPGESII-TQGDEGDNFYVIDQGEVEVY--VNNELVTSVGEGGSFG 140 (320)
Q Consensus 95 ~~~~~g~~I~-~~G~~~~~~yiI~~G~v~v~--~~~~~~~~~~~G~~fG 140 (320)
..+.+|..+- +... ...+++|++|++.+. .++ ....+.+|+++-
T Consensus 44 ~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~~~~~-~~~~l~~Gd~~~ 90 (145)
T 3ht1_A 44 FEVSPNGSTPPHFHE-WEHEIYVLEGSMGLVLPDQG-RTEEVGPGEAIF 90 (145)
T ss_dssp EEEEEEEECCCEECS-SCEEEEEEEECEEEEEGGGT-EEEEECTTCEEE
T ss_pred EEECCCCcCCCccCC-CceEEEEEEeEEEEEEeECC-EEEEECCCCEEE
Confidence 3445554332 2222 345567999999998 766 466799998763
No 177
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=54.74 E-value=12 Score=26.75 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=26.1
Q ss_pred cCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 106 QGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 106 ~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
..+....+++|++|.+.+..++.....+.+|+++
T Consensus 60 ~H~~~~E~~~vl~G~~~~~~~~~~~~~l~~Gd~~ 93 (134)
T 2o8q_A 60 THTVGFQLFYVLRGWVEFEYEDIGAVMLEAGGSA 93 (134)
T ss_dssp EECCSCEEEEEEESEEEEEETTTEEEEEETTCEE
T ss_pred ECCCCcEEEEEEeCEEEEEECCcEEEEecCCCEE
Confidence 3333478999999999999887345678899876
No 178
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=54.04 E-value=15 Score=32.57 Aligned_cols=49 Identities=8% Similarity=0.193 Sum_probs=38.2
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEE---cCEEEEecCCCCee
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYV---NNELVTSVGEGGSF 139 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~---~~~~~~~~~~G~~f 139 (320)
.+....+.+|..+-......+.+++|++|++.+.. ++.....+++||.+
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 101 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQ 101 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEE
Confidence 56678889988766665567899999999999865 24466778899886
No 179
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=53.82 E-value=51 Score=24.37 Aligned_cols=45 Identities=7% Similarity=0.192 Sum_probs=30.7
Q ss_pred eeEeCCCCe--EEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 212 PVSFQDKEA--IVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 212 ~~~~~~g~~--I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
...+.+|.. -.........+++|++|++.+... + ....+.+||++
T Consensus 50 ~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~----~---~~~~l~~Gd~i 96 (162)
T 3l2h_A 50 LIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTME----N---DQYPIAPGDFV 96 (162)
T ss_dssp EEEECTTCBSSSSBEESSCCEEEEEEESCEEEEET----T---EEEEECTTCEE
T ss_pred EEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEEC----C---EEEEeCCCCEE
Confidence 355667763 223333567899999999998742 1 25779999987
No 180
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=53.79 E-value=42 Score=23.91 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=31.4
Q ss_pred CeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCe-EEEEE
Q psy18137 229 DDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPL-KCVKL 289 (320)
Q Consensus 229 ~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~-~v~~i 289 (320)
+.+++|++|++.+.. .+++ ...+++||++- .......+..+.+++ .++++
T Consensus 69 ~E~~~Vl~G~~~l~~---~~g~---~~~l~~GD~~~-----ip~g~~h~~~~~~~~rK~yv~ 119 (123)
T 3bcw_A 69 IEYCHIIEGEARLVD---PDGT---VHAVKAGDAFI-----MPEGYTGRWEVDRHVKKIYFV 119 (123)
T ss_dssp EEEEEEEEEEEEEEC---TTCC---EEEEETTCEEE-----ECTTCCCEEEEEEEEEEEEEE
T ss_pred cEEEEEEEEEEEEEE---CCCe---EEEECCCCEEE-----ECCCCeEEEEECCceeEEEEE
Confidence 788999999999873 1232 45689999983 233333455555543 44444
No 181
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=53.59 E-value=31 Score=24.16 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=38.0
Q ss_pred eeEeCCCCeEEccCCC-CCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEE
Q psy18137 212 PVSFQDKEAIVRQGQP-GDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKL 289 (320)
Q Consensus 212 ~~~~~~g~~I~~~g~~-~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i 289 (320)
...+.+|..+-.--.. ...+++|++|++.+... +++ ...+.+||++= +-.+.++.......+++.++.+
T Consensus 43 ~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~---~~~---~~~l~~Gd~~~---i~~~~~H~~~n~~~~~~~~l~v 112 (125)
T 3h8u_A 43 VWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG---NGI---VTHLKAGDIAI---AKPGQVHGAMNSGPEPFIFVSV 112 (125)
T ss_dssp EEEECTTCEECCC-CTTCEEEEEEEECEEEEECS---TTC---EEEEETTEEEE---ECTTCCCEEEECSSSCEEEEEE
T ss_pred EEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC---CCe---EEEeCCCCEEE---ECCCCEEEeEeCCCCCEEEEEE
Confidence 3556677664322233 36788899999988631 122 46788999872 1123444333333345555544
No 182
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=52.76 E-value=50 Score=23.35 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=37.0
Q ss_pred EeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCe
Q psy18137 214 SFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPL 284 (320)
Q Consensus 214 ~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~ 284 (320)
...+|..-+.. +..+.++.|++|.+.+.-. +|. ...+++||.|- .......+....+.+
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~d---dG~---~~~l~aGD~~~-----~P~G~~gtWev~e~v 106 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQA---DAD---PVKIGPGSIVS-----IAKGVPSRLEILSSF 106 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEET---TCC---CEEECTTEEEE-----ECTTCCEEEEECSCE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeC---CCe---EEEECCCCEEE-----ECCCCeEEEEEeEEE
Confidence 34455444433 2234788899999999732 233 46789999983 344456677776664
No 183
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=52.66 E-value=14 Score=32.02 Aligned_cols=48 Identities=19% Similarity=0.143 Sum_probs=35.8
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEE-EEcCEEEEecCCCCeee
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEV-YVNNELVTSVGEGGSFG 140 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v-~~~~~~~~~~~~G~~fG 140 (320)
+....+.+|...-..-.....+++|++|+..+ ..++ ....+++||+|-
T Consensus 102 ~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~g-~~~~l~~GD~~~ 150 (354)
T 2d40_A 102 AGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDG-ERTPMNEGDFIL 150 (354)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETT-EEEECCTTCEEE
T ss_pred EEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEECC-EEEEEcCCCEEE
Confidence 45677889987643333467999999999888 5666 456799999874
No 184
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=52.41 E-value=31 Score=25.84 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=30.5
Q ss_pred eeEeCCCCeE--EccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 212 PVSFQDKEAI--VRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 212 ~~~~~~g~~I--~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
...+.+|... .......+.+++|++|++.+... + ....+.+||++
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~----~---~~~~l~~GD~i 93 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD----Q---GEHPMVPGDCA 93 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET----T---EEEEECTTCEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC----C---EEEEeCCCCEE
Confidence 4556677643 23333346899999999998743 1 25779999987
No 185
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=51.54 E-value=53 Score=28.49 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=35.9
Q ss_pred cceeEEeCCCCeEEecCCCC-CeEEEEEeeEEEEEEc---C-EEEEecCCCCeee
Q psy18137 91 AMFPVNCLPGESIITQGDEG-DNFYVIDQGEVEVYVN---N-ELVTSVGEGGSFG 140 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~-~~~yiI~~G~v~v~~~---~-~~~~~~~~G~~fG 140 (320)
.+....+++|...-..-... +.+++|++|++.+... + .....+.+||+|-
T Consensus 258 ~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~ 312 (385)
T 1j58_A 258 ASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGY 312 (385)
T ss_dssp EEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEE
T ss_pred EEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEE
Confidence 44566788888764333344 8999999999998764 2 3567799999874
No 186
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=51.13 E-value=63 Score=26.69 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=54.8
Q ss_pred ccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEe-CCCCeecHH---hHhcCCCceeEEEEecCe
Q psy18137 209 SLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKL-GPSDYFGEI---ALLLDRPRAATVVAKGPL 284 (320)
Q Consensus 209 ~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l-~~G~~fGe~---~ll~~~~~~~tv~a~~~~ 284 (320)
.+....+.+|+.+-..-+.-+...+++.|.+.|... +. ....+ ..-++|... ++.-+....+++.|.+++
T Consensus 30 ~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~~----g~--~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~ 103 (270)
T 2qjv_A 30 GFDVWQLXAGESITLPSDERERCLVLVAGLASVXAA----DS--FFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDL 103 (270)
T ss_dssp EEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEET----TE--EEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSE
T ss_pred EEEEEEecCCCEEEecCCCcEEEEEEecceEEEEEC----CE--EEeccccccccccCCCCcEEEECCCCEEEEEecCCc
Confidence 456677889998877777778889999999998743 21 12222 466788653 444455568899999999
Q ss_pred EEEEEeh
Q psy18137 285 KCVKLDR 291 (320)
Q Consensus 285 ~v~~i~~ 291 (320)
+++....
T Consensus 104 ~~~v~sA 110 (270)
T 2qjv_A 104 ELAVCSA 110 (270)
T ss_dssp EEEEEEE
T ss_pred eEEEEee
Confidence 9887654
No 187
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=49.91 E-value=63 Score=22.53 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=47.4
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEE--EEEEchhh
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVK--LWGLDRDS 169 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~--~~~i~~~~ 169 (320)
+....+.+|...-..-.....+++|++|++.+..+++ ...+.+|+.+=-. .+.++.......+++. ++.++.+.
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~-~~~l~~Gd~~~i~---~~~~H~~~~~~~~~~~~~~i~f~~~~ 111 (128)
T 4i4a_A 36 GAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRINDE-DFPVTKGDLIIIP---LDSEHHVINNNQEDFHFYTIWWDKES 111 (128)
T ss_dssp EEEEEECTTEECCCBCCSSEEEEEEEESEEEEEETTE-EEEEETTCEEEEC---TTCCEEEEECSSSCEEEEEEEECHHH
T ss_pred EEEEEECCCCccCCEecCCeEEEEEEeCEEEEEECCE-EEEECCCcEEEEC---CCCcEEeEeCCCCCEEEEEEEECHHH
Confidence 3445667776433222346789999999999998885 4568888876311 1333333222234444 44556666
Q ss_pred HHHHhhh
Q psy18137 170 YRRILMG 176 (320)
Q Consensus 170 ~~~~~~~ 176 (320)
+..++..
T Consensus 112 ~~~~~~~ 118 (128)
T 4i4a_A 112 TLNFLTR 118 (128)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6655543
No 188
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=49.86 E-value=16 Score=30.02 Aligned_cols=48 Identities=19% Similarity=0.111 Sum_probs=35.2
Q ss_pred ceeEEeCCCCeEE-ecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 92 MFPVNCLPGESII-TQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 92 ~~~~~~~~g~~I~-~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
+....+++|..+- +.....+.+++|++|++.+..+++ ...+++||++=
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~-~~~l~~GD~i~ 229 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNN-WIPVKKGDYIF 229 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSC-EEEEETTCEEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECCE-EEEeCCCCEEE
Confidence 4667888887653 222345789999999999988764 45688998763
No 189
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=49.83 E-value=22 Score=29.41 Aligned_cols=175 Identities=13% Similarity=0.097 Sum_probs=85.8
Q ss_pred eeEEeCCCCeEEec-C-CCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEchh--
Q psy18137 93 FPVNCLPGESIITQ-G-DEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRD-- 168 (320)
Q Consensus 93 ~~~~~~~g~~I~~~-G-~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~-- 168 (320)
....+++|...-.. . ...+.+++|++|++.+..+++ ...+++||++--. .+.++...-...+.+.++.+.+.
T Consensus 65 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~-~~~L~~GD~~~~~---~~~~H~~~N~~~~~~~~l~v~~~y~ 140 (274)
T 1sef_A 65 YIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQE-THELEAGGYAYFT---PEMKMYLANAQEADTEVFLYKKRYQ 140 (274)
T ss_dssp EEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSC-EEEEETTEEEEEC---TTSCCEEEESSSSCEEEEEEEEECC
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEECCE-EEEECCCCEEEEC---CCCCEEEEeCCCCCEEEEEEEeeee
Confidence 45667777654322 1 124679999999999998775 4579999987421 23333333333344655554321
Q ss_pred hHHHHhhhhhHHHhhHHHHHhhhhhhcc--cCcHHHHhhh-------hcccceeEeCCCCeEEc-cCCCCCeEEEEEecE
Q psy18137 169 SYRRILMGSTIRKRKLYEEFLSRVSILE--SLEKWERLTV-------ADSLEPVSFQDKEAIVR-QGQPGDDFYIIVEGT 238 (320)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~l~~~~~~~l-------~~~~~~~~~~~g~~I~~-~g~~~~~~yiI~~G~ 238 (320)
....+ .+... ..-...++... .-.......+ .-.+....+.+|..+-. .-.....+++|++|+
T Consensus 141 ~~~g~---~p~~~----v~~~~d~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~ 213 (274)
T 1sef_A 141 PLAGH---QPYKV----VGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQ 213 (274)
T ss_dssp CCTTC---CCCCE----EEEGGGSCCEEGGGCTTEEEEECSCSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECE
T ss_pred eCCCC---CCcce----eCChHHCCccccCCCCCeEEEEeCCcccCCCEEEEEEEECCCCccCcceeccCeEEEEEEeCE
Confidence 11000 00000 00000000000 0000000001 11123346677765532 223457888999999
Q ss_pred EEEEEeccCCCccEEEEEeCCCCeecHHhHhc-CCCceeEEEEe-cCeEEEEE
Q psy18137 239 ALVLQNTVEEESPVEVGKLGPSDYFGEIALLL-DRPRAATVVAK-GPLKCVKL 289 (320)
Q Consensus 239 v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~-~~~~~~tv~a~-~~~~v~~i 289 (320)
+.+... + ....+.+||++= +. +.+..+..... +++.+++.
T Consensus 214 ~~~~i~----~---~~~~l~~GD~i~----i~~~~~H~~~n~~~~~~~~~l~~ 255 (274)
T 1sef_A 214 GMYNLD----N---EWYPVEKGDYIF----MSAYVPQAAYAVGREEPLMYVYS 255 (274)
T ss_dssp EEEEET----T---EEEEEETTCEEE----ECTTCCEEEEEECSSSCEEEEEE
T ss_pred EEEEEC----C---EEEEECCCCEEE----ECCCCCEEEEeCCCCCCEEEEEE
Confidence 998742 1 257799999982 22 34444333333 44555544
No 190
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=49.79 E-value=16 Score=28.56 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=43.9
Q ss_pred cceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEE--ecCeEEE
Q psy18137 210 LEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVA--KGPLKCV 287 (320)
Q Consensus 210 ~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a--~~~~~v~ 287 (320)
+....+.+|..+-.-...+..+++|++|.+. +.. ..+.+||++ ........+..+ .++|.+|
T Consensus 127 v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~-----de~------~~~~~Gd~~-----~~p~g~~H~p~a~~~~gc~~l 190 (195)
T 2q1z_B 127 ARLLWIPGGQAVPDHGHRGLELTLVLQGAFR-----DET------DRFGAGDIE-----IADQELEHTPVAERGLDCICL 190 (195)
T ss_dssp EEEEEECTTCBCCCCCCSSCEEEEEEESEEE-----CSS------SEEETTCEE-----EECSSCCCCCEECSSSCEEEE
T ss_pred EEEEEECCCCCCCCcCCCCeEEEEEEEEEEE-----CCc------EEECCCeEE-----EeCcCCccCCEeCCCCCEEEE
Confidence 3467788898887777778899999999975 111 358889987 223333344555 6678887
Q ss_pred EE
Q psy18137 288 KL 289 (320)
Q Consensus 288 ~i 289 (320)
..
T Consensus 191 ~~ 192 (195)
T 2q1z_B 191 AA 192 (195)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 191
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=49.48 E-value=38 Score=26.38 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=35.0
Q ss_pred cceeEEeCCCCeEE-ecCCCCCeEEEEEeeEEEEEEc------CE-EEEecCCCCeee
Q psy18137 91 AMFPVNCLPGESII-TQGDEGDNFYVIDQGEVEVYVN------NE-LVTSVGEGGSFG 140 (320)
Q Consensus 91 ~~~~~~~~~g~~I~-~~G~~~~~~yiI~~G~v~v~~~------~~-~~~~~~~G~~fG 140 (320)
.+....+.+|..+- +.....+.+++|++|++.+... ++ ....+.+|+.|-
T Consensus 73 ~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 73 SMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 34566788887553 3333357999999999998663 33 267799999873
No 192
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=48.61 E-value=30 Score=29.75 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=36.0
Q ss_pred cceeEEeCCCCeEE-ecCCCCCeEEEEEeeEEEEEE---cC-EEEEecCCCCeee
Q psy18137 91 AMFPVNCLPGESII-TQGDEGDNFYVIDQGEVEVYV---NN-ELVTSVGEGGSFG 140 (320)
Q Consensus 91 ~~~~~~~~~g~~I~-~~G~~~~~~yiI~~G~v~v~~---~~-~~~~~~~~G~~fG 140 (320)
.+....+.+|...- +.....+.+++|++|++.+.. ++ .....+++||++-
T Consensus 53 ~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 107 (361)
T 2vqa_A 53 AGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWY 107 (361)
T ss_dssp EEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred eeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEE
Confidence 34456778887643 334437899999999999987 44 3567899998763
No 193
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=48.34 E-value=19 Score=32.24 Aligned_cols=49 Identities=8% Similarity=0.234 Sum_probs=37.6
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEE--cC-EEEEecCCCCee
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYV--NN-ELVTSVGEGGSF 139 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~--~~-~~~~~~~~G~~f 139 (320)
.+....+++|..+-...-..+.+++|++|++.+.. .+ .....+++||.+
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 138 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAI 138 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEE
Confidence 55567889998776655567899999999998864 22 467778899886
No 194
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=48.12 E-value=67 Score=22.35 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=28.5
Q ss_pred eeEeCCCCeE--EccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 212 PVSFQDKEAI--VRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 212 ~~~~~~g~~I--~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
...+.+|..+ ....+....+|+|++|.+.+... + ....+.+||++
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~----~---~~~~l~~Gd~i 76 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFITID----G---EKIELQAGDWL 76 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEET----T---EEEEEETTEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEEEC----C---EEEEeCCCCEE
Confidence 3455666543 22333334577799999998742 1 25678999987
No 195
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=48.07 E-value=34 Score=28.24 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=39.0
Q ss_pred HhcceeEEeCCCCeEE-ecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 89 FDAMFPVNCLPGESII-TQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 89 ~~~~~~~~~~~g~~I~-~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
...+...+|++|..|= .+-...++-++|++|+..+..+++ ...+++||++-
T Consensus 185 d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l~~~-~~~V~~GD~i~ 236 (266)
T 4e2q_A 185 DFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDN-WYPVQAGDVIW 236 (266)
T ss_dssp SEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEETTE-EEEEETTCEEE
T ss_pred ceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEECCE-EEEecCCCEEE
Confidence 4466678899999984 344456789999999998887774 56688898763
No 196
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=47.82 E-value=15 Score=29.76 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=25.7
Q ss_pred CCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 110 GDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 110 ~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
.+.+..|++|.+.+..++.....+++||.|-
T Consensus 186 ~~E~~~ILeG~v~lt~~~G~~~~~~aGD~~~ 216 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENGSSLTVNTGDTVF 216 (238)
T ss_dssp SCEEEEEEECCEEEEETTSCEEEECTTCEEE
T ss_pred CCEEEEEEEeEEEEEeCCCCEEEECCCCEEE
Confidence 3678889999999998666667899999875
No 197
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=47.70 E-value=22 Score=27.58 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=33.2
Q ss_pred ceeEEeCCCCeE-------EecCC--CCCeEEEEEeeEEEEEEcCEE----EEecCCCCee
Q psy18137 92 MFPVNCLPGESI-------ITQGD--EGDNFYVIDQGEVEVYVNNEL----VTSVGEGGSF 139 (320)
Q Consensus 92 ~~~~~~~~g~~I-------~~~G~--~~~~~yiI~~G~v~v~~~~~~----~~~~~~G~~f 139 (320)
+....+++|... .+... ..+.+++|++|++.+...++. ...+++||++
T Consensus 69 ~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v 129 (190)
T 1x82_A 69 FATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVV 129 (190)
T ss_dssp EEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEE
T ss_pred EEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEE
Confidence 345578888762 11222 236999999999999876543 4679999876
No 198
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=47.52 E-value=31 Score=29.97 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=35.1
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEE---cCEE-EEecCCCCee
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYV---NNEL-VTSVGEGGSF 139 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~---~~~~-~~~~~~G~~f 139 (320)
.+....+.+|..+-..-.....+++|++|++.+.. +++. ...+++||++
T Consensus 80 ~~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~ 132 (385)
T 1j58_A 80 ASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLW 132 (385)
T ss_dssp EEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEE
T ss_pred EEEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEE
Confidence 44566778888653322237899999999999987 4542 4589999876
No 199
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=47.49 E-value=29 Score=25.94 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=22.2
Q ss_pred CCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 228 GDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 228 ~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
...+++|++|++.+... + ....+.+||++
T Consensus 64 ~~E~~~Vl~G~~~v~v~----g---~~~~l~~Gd~i 92 (156)
T 3kgz_A 64 HVHAVMIHRGHGQCLVG----E---TISDVAQGDLV 92 (156)
T ss_dssp SCEEEEEEEEEEEEEET----T---EEEEEETTCEE
T ss_pred CcEEEEEEeCEEEEEEC----C---EEEEeCCCCEE
Confidence 45788899999998742 1 25678899987
No 200
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=47.09 E-value=1.3e+02 Score=27.15 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=33.5
Q ss_pred ceeEeCCCCeE-EccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 211 EPVSFQDKEAI-VRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 211 ~~~~~~~g~~I-~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
....+.+|..+ .+-...++.+++|++|.+.+.... .++.......+.+||+|
T Consensus 370 a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~-~~g~~~~~~~l~~GDv~ 422 (493)
T 2d5f_A 370 QYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVN-AQGNAVFDGELRRGQLL 422 (493)
T ss_dssp EEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEEC-TTSCEEEEEEEETTCEE
T ss_pred EEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEc-CCCCEEEeEEEcCCCEE
Confidence 34455666543 233344578999999999987543 33343434679999998
No 201
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=46.43 E-value=63 Score=21.60 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=37.4
Q ss_pred eEeCCCCeEEc-cCCCCCeE-EEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEE
Q psy18137 213 VSFQDKEAIVR-QGQPGDDF-YIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKL 289 (320)
Q Consensus 213 ~~~~~g~~I~~-~g~~~~~~-yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i 289 (320)
..+.+|..+-. ..+....+ ++|++|.+.+... + ++ ...+.+||++= + +......+.+.+++.++.+
T Consensus 38 ~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~--~-~~---~~~l~~Gd~~~----i-p~~~~H~~~~~~~~~~l~~ 105 (110)
T 2q30_A 38 FTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGD--G-DA---VIPAPRGAVLV----A-PISTPHGVRAVTDMKVLVT 105 (110)
T ss_dssp EEECTTCEEEEECCSSSCEEEEEEEESCEEEECG--G-GC---EEEECTTEEEE----E-ETTSCEEEEESSSEEEEEE
T ss_pred EEECCCCcCCcccCCCCccEEEEEEeCEEEEEeC--C-CE---EEEECCCCEEE----e-CCCCcEEEEEcCCcEEEEE
Confidence 45667765532 22222355 7999999988631 1 11 46789999872 2 2222345556666655543
No 202
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=46.27 E-value=60 Score=21.29 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=38.7
Q ss_pred eeEeCCCCeEEccCCC-CCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEe--cCeEEEE
Q psy18137 212 PVSFQDKEAIVRQGQP-GDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAK--GPLKCVK 288 (320)
Q Consensus 212 ~~~~~~g~~I~~~g~~-~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~--~~~~v~~ 288 (320)
...+.+|..+-.--.. ...+++|++|.+.+... + ....+.+||++= + .......+.+. +++.++.
T Consensus 32 ~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~----~---~~~~l~~Gd~~~----i-p~~~~H~~~~~~~~~~~~~~ 99 (105)
T 1v70_A 32 LYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG----E---EEALLAPGMAAF----A-PAGAPHGVRNESASPALLLV 99 (105)
T ss_dssp EEEECTTCEEEEECCSSCEEEEEEEESCEEEEET----T---EEEEECTTCEEE----E-CTTSCEEEECCSSSCEEEEE
T ss_pred EEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC----C---EEEEeCCCCEEE----E-CCCCcEEeEeCCCCCEEEEE
Confidence 3456777665322223 35689999999998742 1 257789999872 2 22223344443 3566665
Q ss_pred E
Q psy18137 289 L 289 (320)
Q Consensus 289 i 289 (320)
+
T Consensus 100 v 100 (105)
T 1v70_A 100 V 100 (105)
T ss_dssp E
T ss_pred E
Confidence 4
No 203
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=45.55 E-value=30 Score=26.20 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=22.2
Q ss_pred CCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 228 GDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 228 ~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
...+++|++|++.+... + ....+.+||++
T Consensus 73 ~~E~~~Vl~G~~~~~v~----g---~~~~l~~GD~i 101 (166)
T 3jzv_A 73 HAHGVMILKGRGHAMVG----R---AVSAVAPYDLV 101 (166)
T ss_dssp SCEEEEEEEECEEEEET----T---EEEEECTTCEE
T ss_pred CcEEEEEEeCEEEEEEC----C---EEEEeCCCCEE
Confidence 45788899999998742 1 25779999987
No 204
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=44.70 E-value=28 Score=26.15 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=43.0
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeee----ceEEEEE
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAK----TDVKLWG 164 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~----~~~~~~~ 164 (320)
.+....+++|..+-.....+...++|++|.......+ ..+.+|+++=+.. ....+..+. ++|.++.
T Consensus 43 ~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~e~~---~~~~~Gd~~~~P~-----g~~H~~~~~~~~~e~~~~~~ 112 (159)
T 3ebr_A 43 TITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYKEHD---WVAHAGSVVYETA-----STRHTPQSAYAEGPDIITFN 112 (159)
T ss_dssp EEEEEEECSSCBCCCEEESSCEEEEEEESCEEETTSS---CCBCTTCEEEECS-----SEEECEEESSSSSSCEEEEE
T ss_pred EEEEEEECCCCCcccccCCCCEEEEEEEeEEEEeCCC---eEECCCeEEEECC-----CCcceeEeCCCCCCCEEEEE
Confidence 5567889999988776666788889999998753111 3678888764321 123334444 5677666
No 205
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=43.22 E-value=1.1e+02 Score=23.28 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=29.6
Q ss_pred eEeCCCCeEEc-cC-CCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 213 VSFQDKEAIVR-QG-QPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 213 ~~~~~g~~I~~-~g-~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
..+.+|...-. .. .....+++|++|.+.+... + ....+.+||++
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~----~---~~~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFD----E---QWHELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEET----T---EEEEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEEC----C---EEEEeCCCCEE
Confidence 45566665432 12 2346899999999998742 2 35689999987
No 206
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=41.49 E-value=1e+02 Score=27.11 Aligned_cols=48 Identities=8% Similarity=0.161 Sum_probs=38.0
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEE---cCEEEEecCCCCe
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYV---NNELVTSVGEGGS 138 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~---~~~~~~~~~~G~~ 138 (320)
.+....+++|..+...--..+.+++|++|+..+.. .+.....+.+||.
T Consensus 53 s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GDv 103 (397)
T 2phl_A 53 RLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDN 103 (397)
T ss_dssp EEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSC
T ss_pred EEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcEEEEECCCCc
Confidence 56677889988876665567899999999998865 3456778999998
No 207
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=41.43 E-value=58 Score=23.75 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=38.8
Q ss_pred eeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEe
Q psy18137 212 PVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLD 290 (320)
Q Consensus 212 ~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~ 290 (320)
...+.+|..+-.--.....+++|++|.+.+... ++. ...+.+||++= +-.+.+........+++.++.+.
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~----~~~--~~~l~~Gd~i~---ip~~~~H~~~n~~~~~~~~l~v~ 121 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQER----GKP--ARILKKGDVVE---IPPNVVHWHGAAPDEELVHIGIS 121 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEET----TSC--CEEEETTCEEE---ECTTCCEEEEEBTTBCEEEEEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEEC----CEE--EEEECCCCEEE---ECCCCcEEeEeCCCCCEEEEEEE
Confidence 345566665432222346899999999998742 111 25688999882 11234443333333456555553
No 208
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=41.33 E-value=23 Score=28.71 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=29.0
Q ss_pred CCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeee
Q psy18137 99 PGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 99 ~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fG 140 (320)
.|+.... --+.+.+.+|++|++.+...+ ....+++||.+-
T Consensus 55 ~g~~~v~-~~p~dE~~~VleG~~~lt~~g-~~~~~~~Gd~~~ 94 (238)
T 3myx_A 55 GTALSVE-AYPYTEMLVMHRGSVTLTSGT-DSVTLSTGESAV 94 (238)
T ss_dssp CSEEEES-SCSSEEEEEEEESEEEEEETT-EEEEEETTCEEE
T ss_pred ccccccc-cCCCcEEEEEEEeEEEEECCC-eEEEEcCCCEEE
Confidence 5555552 234589999999999998854 555588998763
No 209
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=40.29 E-value=33 Score=30.63 Aligned_cols=49 Identities=10% Similarity=0.172 Sum_probs=38.0
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEE--c-CEEEEecCCCCee
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYV--N-NELVTSVGEGGSF 139 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~--~-~~~~~~~~~G~~f 139 (320)
.+....+.+|..+-......+.+++|++|++.+.. + +.....+++||.+
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 113 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQ 113 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEE
Confidence 56678889998877665567899999999998865 2 2466778888876
No 210
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=39.68 E-value=11 Score=25.74 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=32.0
Q ss_pred ceeEEeCCCCeEEecCCCC-CeEEEEEeeEEEEEEcCE--EEEecCCCCee
Q psy18137 92 MFPVNCLPGESIITQGDEG-DNFYVIDQGEVEVYVNNE--LVTSVGEGGSF 139 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~-~~~yiI~~G~v~v~~~~~--~~~~~~~G~~f 139 (320)
.....++||..+=.+--.. ..+|+|++|++.+...+. ....+.+|+++
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEE
Confidence 3456778888775554444 457788899999887553 44557888875
No 211
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=39.49 E-value=1.9e+02 Score=26.28 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=32.8
Q ss_pred eeEeCCCCeEE-ccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 212 PVSFQDKEAIV-RQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 212 ~~~~~~g~~I~-~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
...+.+|..+- +-...+..+++|++|.+.+.... .++.......+.+||+|
T Consensus 376 ~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~-~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 376 YGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVD-SNGNRVYDEELQEGHVL 427 (510)
T ss_dssp EEEEETTCEEEEEEESSCCEEEEEEESEEEEEEEC-TTSCEEEEEEEETTCEE
T ss_pred EEEecCCceecceECCCCCEEEEEEeCEEEEEEEe-CCCCEEEeEEEcCCcEE
Confidence 34555665432 22334578999999999987543 33334445679999987
No 212
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=39.27 E-value=80 Score=28.50 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=33.2
Q ss_pred ceeEeCCCCeEE-ccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 211 EPVSFQDKEAIV-RQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 211 ~~~~~~~g~~I~-~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
....+.+|..+- +-...+..+++|++|.+.+.... .++.......+.+||+|
T Consensus 341 ~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~-~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 341 EFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVN-CNGERVFDGELQEGRVL 393 (476)
T ss_dssp EEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEEC-TTSCEEEEEEEETTCEE
T ss_pred EEEEecCCceecceECCCCCEEEEEEeCEEEEEEEe-cCCCEEeeeEEcCCCEE
Confidence 344556665432 22233578999999999987543 33444445679999987
No 213
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=39.12 E-value=95 Score=21.53 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=41.9
Q ss_pred eEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhc-CCCceeEEEEecCeE--EEEE
Q psy18137 213 VSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLL-DRPRAATVVAKGPLK--CVKL 289 (320)
Q Consensus 213 ~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~-~~~~~~tv~a~~~~~--v~~i 289 (320)
..+.+|...-.--.....+++|++|++.+... + ....+.+||++= +. +.+........+++. ++.+
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~----~---~~~~l~~Gd~~~----i~~~~~H~~~~~~~~~~~~~~i~f 107 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRIN----D---EDFPVTKGDLII----IPLDSEHHVINNNQEDFHFYTIWW 107 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEET----T---EEEEEETTCEEE----ECTTCCEEEEECSSSCEEEEEEEE
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEEC----C---EEEEECCCcEEE----ECCCCcEEeEeCCCCCEEEEEEEE
Confidence 34445543222222456899999999998742 1 256789999872 32 233333222234444 4456
Q ss_pred ehHHHHHhhc
Q psy18137 290 DRARFERVLG 299 (320)
Q Consensus 290 ~~~~f~~ll~ 299 (320)
+.+.+..++.
T Consensus 108 ~~~~~~~~~~ 117 (128)
T 4i4a_A 108 DKESTLNFLT 117 (128)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 6666555543
No 214
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=38.93 E-value=27 Score=26.30 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=28.3
Q ss_pred EEecCCCCCeEEEEEe--eEEEEEEcCEEEEecCCCCeee
Q psy18137 103 IITQGDEGDNFYVIDQ--GEVEVYVNNELVTSVGEGGSFG 140 (320)
Q Consensus 103 I~~~G~~~~~~yiI~~--G~v~v~~~~~~~~~~~~G~~fG 140 (320)
-.+.....+.+|+|++ |...+..+++ ...+++|+++-
T Consensus 59 ~~H~H~~~~E~~yVLe~~G~g~v~idge-~~~l~~GD~v~ 97 (157)
T 4h7l_A 59 RTHYHREHQEIYVVLDHAAHATIELNGQ-SYPLTKLLAIS 97 (157)
T ss_dssp CCBBCSSCEEEEEEEEECTTCEEEETTE-EEECCTTEEEE
T ss_pred cceECCCCcEEEEEEecCcEEEEEECCE-EEEeCCCCEEE
Confidence 3444555578999999 9999999886 45799998763
No 215
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=38.72 E-value=1.1e+02 Score=22.41 Aligned_cols=50 Identities=6% Similarity=0.151 Sum_probs=29.6
Q ss_pred eEeCCCCeE-EccCCCCCeEEEEEecEEEEEEeccCC--CccEEEEEeCCCCee
Q psy18137 213 VSFQDKEAI-VRQGQPGDDFYIIVEGTALVLQNTVEE--ESPVEVGKLGPSDYF 263 (320)
Q Consensus 213 ~~~~~g~~I-~~~g~~~~~~yiI~~G~v~v~~~~~~~--~~~~~~~~l~~G~~f 263 (320)
..+.+|..+ .... ....+++|++|.+.+....... ........+.+||++
T Consensus 46 ~~~~pg~~~~~H~H-~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i 98 (163)
T 1lr5_A 46 QTISPGQRTPIHRH-SCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF 98 (163)
T ss_dssp EEECTTCBCCEEEE-SSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE
T ss_pred EEECCCCcCCCeEC-CCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEE
Confidence 445666543 2222 3456899999999987532110 011246679999987
No 216
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=37.97 E-value=1e+02 Score=28.13 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=37.4
Q ss_pred ccceeEeCCCCeEE-ccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 209 SLEPVSFQDKEAIV-RQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 209 ~~~~~~~~~g~~I~-~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
.+....+.+|-+.- +-...++.+++|++|.+++... ..++.......|.+||+|
T Consensus 395 S~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V-~~~G~~v~~~~L~~GDV~ 449 (531)
T 3fz3_A 395 SAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVV-NENGDAILDQEVQQGQLF 449 (531)
T ss_dssp EEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEE-CTTSCEEEEEEEETTCEE
T ss_pred eEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEE-eCCCcEEEEEEecCCeEE
Confidence 34456677776542 2334467899999999998854 444555567889999998
No 217
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=35.01 E-value=15 Score=29.93 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=32.5
Q ss_pred eEEeCCCCeE-EecCCCCCeEEEEEeeEEEEEE--------cCE-----------EEEecCCCCeee
Q psy18137 94 PVNCLPGESI-ITQGDEGDNFYVIDQGEVEVYV--------NNE-----------LVTSVGEGGSFG 140 (320)
Q Consensus 94 ~~~~~~g~~I-~~~G~~~~~~yiI~~G~v~v~~--------~~~-----------~~~~~~~G~~fG 140 (320)
...+++|... .+.....+.+++|++|++.+.. ++. ....+++||++-
T Consensus 47 ~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~ 113 (239)
T 2xlg_A 47 HAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIY 113 (239)
T ss_dssp EEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEE
T ss_pred EEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEE
Confidence 3466776533 2233346789999999999988 554 167899999763
No 218
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=34.58 E-value=62 Score=28.61 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=37.3
Q ss_pred ccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 209 SLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 209 ~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
.+....+.+|..+..-....+.+++|++|+..+..... ++ .....+.+||++
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~-~~--~~~~~l~~GDv~ 101 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNN-DD--RDSYNLHPGDAQ 101 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECS-SC--EEEEEECTTEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEEC-CC--CeEEEecCCCEE
Confidence 44567788887654446667899999999999875433 21 236789999997
No 219
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=34.29 E-value=1.4e+02 Score=23.63 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=41.3
Q ss_pred cceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEee-eceEEEEE
Q psy18137 91 AMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRA-KTDVKLWG 164 (320)
Q Consensus 91 ~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a-~~~~~~~~ 164 (320)
......+++|..+-....-+..+ +|++|++.- ++ ..+.+|+.+- .......+..| .+.|.+|.
T Consensus 147 ~v~l~r~~~G~~~~~~~hgG~Ei-lVL~G~~~d--~~---~~~~~GsWlR-----~P~gs~h~~~ag~~g~~i~~ 210 (223)
T 3o14_A 147 TVTHRKLEPGANLTSEAAGGIEV-LVLDGDVTV--ND---EVLGRNAWLR-----LPEGEALSATAGARGAKIWM 210 (223)
T ss_dssp EEEEEEECTTCEEEECCSSCEEE-EEEEEEEEE--TT---EEECTTEEEE-----ECTTCCEEEEEEEEEEEEEE
T ss_pred EEEEEEECCCCccCCCCCCcEEE-EEEEeEEEE--CC---ceECCCeEEE-----eCCCCccCcEECCCCeEEEE
Confidence 55678899999998777656665 999999853 22 4566666542 12223455555 56677664
No 220
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=34.08 E-value=61 Score=25.37 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=31.3
Q ss_pred cCccCCCCCHHHHHHHHhcceeEEeCCCCeEEecCCCC-CeEEE
Q psy18137 73 KNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEG-DNFYV 115 (320)
Q Consensus 73 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~-~~~yi 115 (320)
.+|.|.+++..+..+.+... ..|++|+++...+ +++-+
T Consensus 7 ~HP~F~n~~~~qAe~~L~~~-----~~Ge~iIRPSSkg~dhLtv 45 (197)
T 3or8_A 7 NHPYYFPFNGKQAEDYLRSK-----ERGDFVIRQSSRGDDHLAI 45 (197)
T ss_dssp CCTTEECCCHHHHHHHHTTS-----CTTCEEEEECSSCTTEEEE
T ss_pred CCCCcCCCCHHHHHHHHhcC-----CCCCEEEeeCCCCCCcEEE
Confidence 57999999999999888763 6899999999885 55543
No 221
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=33.76 E-value=2.1e+02 Score=23.85 Aligned_cols=65 Identities=12% Similarity=0.109 Sum_probs=39.2
Q ss_pred eEeCCCCeE-EccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEec-CeEEEEE
Q psy18137 213 VSFQDKEAI-VRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKG-PLKCVKL 289 (320)
Q Consensus 213 ~~~~~g~~I-~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~-~~~v~~i 289 (320)
....+|... .........+++|++|++.+... + ....+.+||++= .......++...+ ++.++.+
T Consensus 51 ~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~----~---~~~~l~~Gd~~~-----~p~~~~H~~~n~~~~~~~~~~ 117 (337)
T 1y3t_A 51 LSGGKGDAFPLHVHKDTHEGILVLDGKLELTLD----G---ERYLLISGDYAN-----IPAGTPHSYRMQSHRTRLVSY 117 (337)
T ss_dssp EEECTTCEEEEEECTTCCEEEEEEESCEEEEET----T---EEEEECTTCEEE-----ECTTCCEEEEECSTTEEEEEE
T ss_pred EEeCCCCCCCceeCCCceEEEEEEECEEEEEEC----C---EEEEECCCCEEE-----ECCCCcEEEEECCCCeEEEEE
Confidence 456676654 33343367899999999998742 2 246799999982 2222233444444 3655544
No 222
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=33.65 E-value=1.9e+02 Score=26.27 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=27.0
Q ss_pred CCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 227 PGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 227 ~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
.+..+.+|++|.+++... ..++....-..|.+||+|
T Consensus 378 ~A~Ei~yVl~G~~rv~~V-~~~g~~~f~~~l~~GDV~ 413 (496)
T 3ksc_A 378 NANSIIYALKGRARLQVV-NCNGNTVFDGELEAGRAL 413 (496)
T ss_dssp SCCEEEEEEESEEEEEEE-CTTSCEEEEEEEETTCEE
T ss_pred CCCEEEEEEeceEEEEEE-eCCCcEEEEEEecCCeEE
Confidence 456888999999999855 444444545679999997
No 223
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=32.92 E-value=67 Score=28.62 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=37.7
Q ss_pred ccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 209 SLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 209 ~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
.+....+.+|..+---....+.+++|++|+..+..... ++ .....+.+||++
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~-~~--~~~~~l~~GDv~ 113 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNP-DS--RDSYILEQGHAQ 113 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECS-SC--EEEEEEETTEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeC-CC--CEEEEeCCCCEE
Confidence 45567788887765556667899999999998875432 22 346789999987
No 224
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=32.36 E-value=42 Score=28.84 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=40.7
Q ss_pred CCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecC-eEEEEEeh--HHHHHh
Q psy18137 227 PGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGP-LKCVKLDR--ARFERV 297 (320)
Q Consensus 227 ~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~-~~v~~i~~--~~f~~l 297 (320)
..+.+++|++|.+.+... + .+ ...+.+||+| +-......++.+.++ +.+|++.. +.+..+
T Consensus 271 ~~~~~~~vleG~~~i~i~--g-~~---~~~l~~Gd~~-----~iPag~~h~~~~~~~~~~~l~~~~g~~g~~~~ 333 (350)
T 1juh_A 271 PGACAFQVQEGRVVVQIG--D-YA---ATELGSGDVA-----FIPGGVEFKYYSEAYFSKVLFVSSGSDGLDQN 333 (350)
T ss_dssp SSCEEEEEEESCEEEEET--T-SC---CEEECTTCEE-----EECTTCCEEEEESSSSEEEEEEEESSSSHHHH
T ss_pred CCcEEEEEEeeEEEEEEC--C-eE---EEEeCCCCEE-----EECCCCCEEEEecCCeEEEEEEecCccchhhe
Confidence 447889999999998743 1 02 4579999998 334444556666655 78887776 555554
No 225
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=32.23 E-value=64 Score=28.86 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=36.8
Q ss_pred ccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 209 SLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 209 ~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
.+....+.+|..+-.-....+.+++|++|++.+.....+ +. ....+.+||++
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~-~~--~~~~l~~GDv~ 138 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPD-GR--DTYKLDQGDAI 138 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETT-EE--EEEEEETTEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCC-CC--EEEEecCCCEE
Confidence 344567788866554466678999999999988754332 22 46789999997
No 226
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=30.78 E-value=50 Score=26.38 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=41.3
Q ss_pred ceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEe
Q psy18137 211 EPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLD 290 (320)
Q Consensus 211 ~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~ 290 (320)
....+.+|..+-.-........+|++|.+.- . -..+.+|+++ ........+..+.+.|.||..-
T Consensus 46 ~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~d-----~------~~~~~~Gd~~-----~~P~g~~H~p~a~~gc~~~vk~ 109 (223)
T 3o14_A 46 SIVRYAPGSRFSAHTHDGGEEFIVLDGVFQD-----E------HGDYPAGTYV-----RNPPTTSHVPGSAEGCTIFVKL 109 (223)
T ss_dssp EEEEECTTEECCCEECTTCEEEEEEEEEEEE-----T------TEEEETTEEE-----EECTTCEECCEESSCEEEEEEE
T ss_pred EEEEECCCCCcccccCCCCEEEEEEEeEEEE-----C------CeEECCCeEE-----EeCCCCccccEeCCCCEEEEEe
Confidence 4567888877665555567888899999852 1 2468888886 2222233445556778877654
No 227
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=30.19 E-value=1.6e+02 Score=26.31 Aligned_cols=43 Identities=9% Similarity=-0.059 Sum_probs=30.8
Q ss_pred HHHHHHHhcceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEE
Q psy18137 83 NTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYV 125 (320)
Q Consensus 83 ~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~ 125 (320)
..++.+--.+....+.+|.++.-.-.....+++|++|+..+..
T Consensus 56 ~~l~~~gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~ 98 (459)
T 2e9q_A 56 DEFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGI 98 (459)
T ss_dssp HHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEE
T ss_pred hhhccCceEEEEEEEcCCCEecceecCCceEEEEEeeEEEEEE
Confidence 3444444466778889988775444457899999999988754
No 228
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=29.79 E-value=2.5e+02 Score=25.16 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=27.3
Q ss_pred CCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 227 PGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 227 ~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
.+..+.+|++|.+++... ..++..+....|.+||+|
T Consensus 343 ~A~Ei~yVl~G~~rv~~V-~~~g~~~f~~~l~~GDV~ 378 (466)
T 3kgl_A 343 NANAVLYVTDGEAHVQVV-NDNGDRVFDGQVSQGQLL 378 (466)
T ss_dssp SCCEEEEEEESEEEEEEE-CTTSCEEEEEEEETTCEE
T ss_pred CCCEEEEEEeceEEEEEE-eCCCcEEEEeEecCCcEE
Confidence 456788899999999854 444445567789999997
No 229
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=28.83 E-value=2.2e+02 Score=22.58 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=23.9
Q ss_pred CCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 226 QPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 226 ~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
...+.+|+|++|.+++... ++ ....+++|+++
T Consensus 150 Hp~EEiy~VLsG~~e~~v~---~g---~~~~l~pGd~v 181 (217)
T 4b29_A 150 HLPEELYSVVSGRALFHLR---NA---PDLMLEPGQTR 181 (217)
T ss_dssp CSSEEEEEEEEECEEEEET---TS---CCEEECTTCEE
T ss_pred CCCceEEEEEeCCEEEEEC---CC---CEEecCCCCEE
Confidence 3467999999999988643 12 24678999987
No 230
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=27.77 E-value=64 Score=28.34 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=37.8
Q ss_pred CCCCeEEEEEecEEEEEEeccC-----CCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEE
Q psy18137 226 QPGDDFYIIVEGTALVLQNTVE-----EESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKL 289 (320)
Q Consensus 226 ~~~~~~yiI~~G~v~v~~~~~~-----~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i 289 (320)
..+..+++|++|+.++...... ++.......+.+||+| +........+.+.+++.++.+
T Consensus 258 ~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~-----vvP~G~~h~~~n~~~l~~l~f 321 (397)
T 2phl_A 258 SKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVF-----VIPAAYPVAIKATSNVNFTGF 321 (397)
T ss_dssp SSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEE-----EECTTCCEEEEESSSEEEEEE
T ss_pred CCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEE-----EECCCCeEEEEeCCCeEEEEE
Confidence 3457899999999988765431 3445567889999998 223333444455455555555
No 231
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=27.65 E-value=94 Score=27.48 Aligned_cols=49 Identities=12% Similarity=0.172 Sum_probs=35.5
Q ss_pred eeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 212 PVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 212 ~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
...+.+|..+.-..-.++.+++|++|...+..... ++ .....+.+||+|
T Consensus 48 ~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~-~~--~~~~~l~~GDv~ 96 (418)
T 3s7i_A 48 QIEAKPNTLVLPKHADADNILVIQQGQATVTVANG-NN--RKSFNLDEGHAL 96 (418)
T ss_dssp EEEECTTEEEEEEEESEEEEEEEEESEEEEEEECS-SC--EEEEEEETTEEE
T ss_pred EEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEec-CC--EEEEEecCCCEE
Confidence 34556777766556667899999999998875443 22 346789999997
No 232
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}
Probab=26.97 E-value=2.5e+02 Score=22.76 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=41.5
Q ss_pred EEeCCCCeEEecCCCCCeEEEEEeeEEEEEEcCEEEEecCCCCeeehhhhhcCCCcceEEeeeceEEEEEEc
Q psy18137 95 VNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLD 166 (320)
Q Consensus 95 ~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~ 166 (320)
..+++|+.+-..-.....+.+|++|.+.+--.+.....+.+|+... +.+ ....++.|.++++++.++
T Consensus 187 ~~L~~g~~~~~~~~~~~~~l~v~~G~v~v~g~~~~~~~l~~gd~~~----l~~-~~~l~l~a~~~a~~LL~d 253 (256)
T 2vec_A 187 IVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAF----IRD-EANITLVADSPLRALLID 253 (256)
T ss_dssp EEECTTCEEEEECSSSEEEEEEEESCEEEEETTEEEEEECTTCEEE----EES-CSEEEEEESSSEEEEEEE
T ss_pred EEECCCCEEEEecCCCeEEEEEEECEEEECCccccceEECCCCEEE----ECC-CCeEEEEeCCCCEEEEEE
Confidence 4677888776554433455667899998843222223477777543 222 235677888888888775
No 233
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=25.90 E-value=80 Score=27.94 Aligned_cols=48 Identities=27% Similarity=0.492 Sum_probs=36.8
Q ss_pred ceeEEeCCCCeEEecCCCCCeEEEEEeeEEEEEE---cCEEEEecCCCCee
Q psy18137 92 MFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYV---NNELVTSVGEGGSF 139 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~v~~---~~~~~~~~~~G~~f 139 (320)
+....+.+|.++.-..-.++.+++|++|+..+.. ++.....+++||.|
T Consensus 46 l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~ 96 (418)
T 3s7i_A 46 IVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRKSFNLDEGHAL 96 (418)
T ss_dssp EEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEE
T ss_pred EEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEE
Confidence 3455678888887776667899999999988754 34567788899987
No 234
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=25.24 E-value=27 Score=23.69 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=29.9
Q ss_pred ceeEEeCCCCeEEecCCCCCe-EEEEEeeEEEEEE-cCE-EEEecCCCCeeeh
Q psy18137 92 MFPVNCLPGESIITQGDEGDN-FYVIDQGEVEVYV-NNE-LVTSVGEGGSFGE 141 (320)
Q Consensus 92 ~~~~~~~~g~~I~~~G~~~~~-~yiI~~G~v~v~~-~~~-~~~~~~~G~~fGe 141 (320)
+....++||..+-.---..++ ++++.+|.+.+.. ++. ....+.+|+++..
T Consensus 19 v~~~~l~PG~~~~~H~H~~~~~iv~v~~G~~~~~~~dG~~~~~~l~aGd~~~~ 71 (98)
T 2ozi_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYAR 71 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEE
T ss_pred EEEEEECCCCccCcEeCCCCEEEEEEeeEEEEEEeCCCcEEEEEECCCCEEEE
Confidence 445678888876322112232 2234799998876 444 3667999998753
No 235
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=25.21 E-value=2e+02 Score=21.90 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=21.2
Q ss_pred eeEEeCCCCeEEe-cCCC------CCeEEEEEeeEEEEEEcCE
Q psy18137 93 FPVNCLPGESIIT-QGDE------GDNFYVIDQGEVEVYVNNE 128 (320)
Q Consensus 93 ~~~~~~~g~~I~~-~G~~------~~~~yiI~~G~v~v~~~~~ 128 (320)
+...+.+|+.+=. ..-. -..=+++..|.+.++..+.
T Consensus 56 K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~~g~ 98 (175)
T 2y0o_A 56 KELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYVEGE 98 (175)
T ss_dssp EEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEESSS
T ss_pred EEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEECCc
Confidence 4455566666622 2221 1244458899999988664
No 236
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=25.03 E-value=1.4e+02 Score=27.03 Aligned_cols=56 Identities=13% Similarity=0.010 Sum_probs=38.1
Q ss_pred HHHHHhcceeEEeCCCCeEEec-CCCCCeEEEEEeeEEEEEEcC---EEE--EecCCCCeee
Q psy18137 85 RSDIFDAMFPVNCLPGESIITQ-GDEGDNFYVIDQGEVEVYVNN---ELV--TSVGEGGSFG 140 (320)
Q Consensus 85 ~~~l~~~~~~~~~~~g~~I~~~-G~~~~~~yiI~~G~v~v~~~~---~~~--~~~~~G~~fG 140 (320)
+..+--.+....+.+|.++--. ....+.+++|++|++.+...+ ..+ ..+.+||+|=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 4454456777788888754332 233589999999999987633 222 4699999873
No 237
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=23.92 E-value=1.9e+02 Score=20.19 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=40.8
Q ss_pred EeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEE
Q psy18137 214 SFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVK 288 (320)
Q Consensus 214 ~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~ 288 (320)
...||+--+.-|.......-|++|.+++... +... -..+..|+.|- -.....+.+.+.+.+.-+|
T Consensus 43 Vm~PGe~~YtF~T~~~E~MevvsG~l~V~Lp--g~~e---W~~~~aGesF~-----VpanssF~lkv~~~~~Y~C 107 (111)
T 3hqx_A 43 VILPTEQPLTFETHVPERMEIISGECRVKIA--DSTE---SELFRAGQSFY-----VPGNSLFKIETDEVLDYVC 107 (111)
T ss_dssp EECCCSSCEEEECSSCEEEEEEESEEEEEET--TCSS---CEEEETTCEEE-----ECTTCEEEEECSSCEEEEE
T ss_pred EEeccccceEEcCCCcEEEEEEEeEEEEEcC--Cccc---CEEeCCCCEEE-----ECCCCcEEEEECcceeEEE
Confidence 3456662333344566788899999998743 2222 45677899884 2444677787777655443
No 238
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=23.34 E-value=1e+02 Score=22.23 Aligned_cols=28 Identities=11% Similarity=-0.022 Sum_probs=21.9
Q ss_pred CeEEEEEeeEEEEEEcCEEEEecCCCCee
Q psy18137 111 DNFYVIDQGEVEVYVNNELVTSVGEGGSF 139 (320)
Q Consensus 111 ~~~yiI~~G~v~v~~~~~~~~~~~~G~~f 139 (320)
-.+.+|++|...+..+++ ...+.+|+.|
T Consensus 39 ~~i~~v~~G~~~~~i~~~-~~~l~~Gd~~ 66 (164)
T 2arc_A 39 YILNLTIRGQGVVKNQGR-EFVCRPGDIL 66 (164)
T ss_dssp EEEEEEEEECEEEEETTE-EEEECTTCEE
T ss_pred eEEEEEEEeEEEEEECCE-EEEecCCeEE
Confidence 447789999999998875 4567888865
No 239
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=22.45 E-value=2.6e+02 Score=21.25 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=24.7
Q ss_pred CeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 229 DDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 229 ~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
..+++|++|++.+..... .+ ......+.+||++
T Consensus 97 ~E~~~Vl~G~~~~~i~~~-~g-~~~~~~l~~GD~v 129 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTP-EG-DAKWISMEPGTVV 129 (190)
T ss_dssp CEEEEEEESCEEEEEECT-TC-CEEEEEECTTCEE
T ss_pred CEEEEEEcCEEEEEEcCc-CC-cEEEEEECCCcEE
Confidence 689999999999885432 22 2345789999998
No 240
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=21.81 E-value=1.6e+02 Score=26.73 Aligned_cols=55 Identities=11% Similarity=-0.002 Sum_probs=37.5
Q ss_pred HHHHHhcceeEEeCCCCeEEec-CCCCCeEEEEEeeEEEEEEcC---EE--EEecCCCCee
Q psy18137 85 RSDIFDAMFPVNCLPGESIITQ-GDEGDNFYVIDQGEVEVYVNN---EL--VTSVGEGGSF 139 (320)
Q Consensus 85 ~~~l~~~~~~~~~~~g~~I~~~-G~~~~~~yiI~~G~v~v~~~~---~~--~~~~~~G~~f 139 (320)
+..+--.+....+.+|.++--. .-..+.+++|++|++.+...+ .. ...+.+||+|
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 3444446677788888865432 223589999999999987632 22 3459999987
No 241
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=21.40 E-value=1.6e+02 Score=26.41 Aligned_cols=55 Identities=5% Similarity=0.049 Sum_probs=36.3
Q ss_pred ccceeEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCc-------------------cEEEEEeCCCCee
Q psy18137 209 SLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEES-------------------PVEVGKLGPSDYF 263 (320)
Q Consensus 209 ~~~~~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~-------------------~~~~~~l~~G~~f 263 (320)
.+....+.+|.++.---.....+++|++|+..+.....+... ...+..+.+||+|
T Consensus 64 s~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GDv~ 137 (459)
T 2e9q_A 64 NMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLL 137 (459)
T ss_dssp EEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTEEE
T ss_pred EEEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCCEE
Confidence 444567788877644445678999999999988754222111 1135689999997
No 242
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=20.78 E-value=1.4e+02 Score=26.73 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=26.8
Q ss_pred CCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCee
Q psy18137 227 PGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYF 263 (320)
Q Consensus 227 ~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 263 (320)
.+..+.+|++|.+++... ..++....-..|.+||+|
T Consensus 343 ~A~Ei~yV~~G~~~v~vV-~~~g~~~f~~~l~~GDVf 378 (465)
T 3qac_A 343 NAHNIMYCVRGRGRIQIV-NDQGQSVFDEELSRGQLV 378 (465)
T ss_dssp SCCEEEEEEEEEEEEEEE-CTTSCEEEEEEEETTCEE
T ss_pred CCCEEEEEEeCCEEEEEE-eCCCcEEEEEEecCCeEE
Confidence 456788899999998754 444444556679999997
No 243
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}
Probab=20.18 E-value=3.5e+02 Score=21.91 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=41.3
Q ss_pred eEeCCCCeEEccCCCCCeEEEEEecEEEEEEeccCCCccEEEEEeCCCCeecHHhHhcCCCceeEEEEecCeEEEEEe
Q psy18137 213 VSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLD 290 (320)
Q Consensus 213 ~~~~~g~~I~~~g~~~~~~yiI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~v~~i~ 290 (320)
..+.+|..+-..-.....+.+|.+|.+.+-.. + .....+.+|+... +.+ ....++.+.++++++.|+
T Consensus 187 ~~L~~g~~~~~~~~~~~~~l~v~~G~v~v~g~---~---~~~~~l~~gd~~~----l~~-~~~l~l~a~~~a~~LL~d 253 (256)
T 2vec_A 187 IVLDKGESANFQLHGPRAYLQSIHGKFHALTH---H---EEKAALTCGDGAF----IRD-EANITLVADSPLRALLID 253 (256)
T ss_dssp EEECTTCEEEEECSSSEEEEEEEESCEEEEET---T---EEEEEECTTCEEE----EES-CSEEEEEESSSEEEEEEE
T ss_pred EEECCCCEEEEecCCCeEEEEEEECEEEECCc---c---ccceEECCCCEEE----ECC-CCeEEEEeCCCCEEEEEE
Confidence 45677776654433333555677999987421 0 1124578888764 222 245788888899988876
Done!