RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18137
(320 letters)
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 146 bits (369), Expect = 2e-44
Identities = 113/135 (83%), Positives = 128/135 (94%)
Query: 51 SYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEG 110
SYV+KV+PKDYKTMAAL+KAI KNVLFSHLD+N RSDIFDAMFPV+ + GE++I QGDEG
Sbjct: 2 SYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEG 61
Query: 111 DNFYVIDQGEVEVYVNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSY 170
DNFYVIDQGE++VYVNNE TSVGEGGSFGELALIYGTPRAATV+AKT+VKLWG+DRDSY
Sbjct: 62 DNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSY 121
Query: 171 RRILMGSTIRKRKLY 185
RRILMGST+RKRK+Y
Sbjct: 122 RRILMGSTLRKRKMY 136
Score = 85.5 bits (211), Expect = 3e-21
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 169 SYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPG 228
SY R ++ + + + + + L+ ER + D++ PVSF E +++QG G
Sbjct: 2 SYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEG 61
Query: 229 DDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVK 288
D+FY+I +G + +G FGE+AL+ PRAATV AK +K
Sbjct: 62 DNFYVIDQGE------MDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWG 115
Query: 289 LDRARFERVL 298
+DR + R+L
Sbjct: 116 IDRDSYRRIL 125
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 115 bits (289), Expect = 1e-32
Identities = 104/132 (78%), Positives = 119/132 (90%)
Query: 186 EEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNT 245
EEFLS+VSILESL+KWERLTVAD+LEPV F+D + IV QG+PGD+F+II+EG+A VLQ
Sbjct: 1 EEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRR 60
Query: 246 VEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADIL 305
E E VEVG+LGPSDYFGEIALL++RPRAATVVA+GPLKCVKLDR RFERVLGPC+DIL
Sbjct: 61 SENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDIL 120
Query: 306 KRNITQYNSFVS 317
KRNI QYNSFVS
Sbjct: 121 KRNIQQYNSFVS 132
Score = 79.8 bits (196), Expect = 4e-19
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 71 IAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE-- 128
++K + LD+ R + DA+ PV G+ I+ QG+ GD F++I +G V
Sbjct: 4 LSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSEN 63
Query: 129 ----LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMG-STIRKRK 183
V +G FGE+AL+ PRAATV A+ +K LDR + R+L S I KR
Sbjct: 64 EEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKRN 123
Query: 184 L--YEEFLS 190
+ Y F+S
Sbjct: 124 IQQYNSFVS 132
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 114 bits (286), Expect = 4e-32
Identities = 60/136 (44%), Positives = 82/136 (60%), Gaps = 4/136 (2%)
Query: 54 KKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNF 113
+ + PK L +A +LF +LD S + DAMF GE +I QGD+GDNF
Sbjct: 1 RIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNF 60
Query: 114 YVIDQGEVEVYVNN----ELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDS 169
YVID+G ++YV V + GSFGELAL+Y TPRAAT+ A + LWGLDR +
Sbjct: 61 YVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVT 120
Query: 170 YRRILMGSTIRKRKLY 185
+RRI++ + +KRK+Y
Sbjct: 121 FRRIIVKNNAKKRKMY 136
Score = 79.0 bits (194), Expect = 8e-19
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 172 RILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDF 231
RI+ T +R +E + + ++L+ + V D++ ++ E ++ QG GD+F
Sbjct: 1 RIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNF 60
Query: 232 YIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDR 291
Y+I GT + V FGE+AL+ + PRAAT+ A P LDR
Sbjct: 61 YVIDRGTFDIYVKCDGVGRCVGNY--DNRGSFGELALMYNTPRAATITATSPGALWGLDR 118
Query: 292 ARFERVL 298
F R++
Sbjct: 119 VTFRRII 125
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 99.1 bits (246), Expect = 4e-26
Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 186 EEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNT 245
E F+ + L+SLE ERL V D + + D E I+ QG D F+I+ G +
Sbjct: 1 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKR 60
Query: 246 -----VEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGP 300
+EE VE+ + YFGE+AL+ ++PRAA+ A G +KC+ +D FER+LGP
Sbjct: 61 KGKSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGP 120
Query: 301 CADILKRNITQY 312
C +I+KRNI Y
Sbjct: 121 CMEIMKRNIATY 132
Score = 81.8 bits (201), Expect = 1e-19
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 76 LFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE------- 128
L+ + R + D + GE II QGD D+F++++ GEV + + +
Sbjct: 9 FLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEE 68
Query: 129 ----LVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKL 184
+ G FGELAL+ PRAA+ A VK +D ++ R+L ++
Sbjct: 69 NGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRN 128
Query: 185 YEEFLSRVSIL 195
+ ++ L
Sbjct: 129 IATYEEQLVAL 139
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 74.4 bits (182), Expect = 3e-17
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 67 LSKAIAKNVLFSHLDENTRSDIFDAMFPVNCL-PGESIITQGDEGDNFYVIDQGEVEVYV 125
+ + SHL + ++ + + G + QG+EG ++Y+I +G V V +
Sbjct: 8 IYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI 67
Query: 126 NNELVTS-VGEGGSFGELALIYGTPRAATVRAKTD-VKLWGLDRDSYRRIL 174
+ V + EG FG+LAL+ PRAA++ + D +D++ + RIL
Sbjct: 68 YGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRIL 118
Score = 67.8 bits (165), Expect = 8e-15
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 7/126 (5%)
Query: 178 TIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSF-QDKEAIVRQGQPGDDFYIIVE 236
T+ ++ + L + L L + +A L S + + QG+ G +YII++
Sbjct: 1 TVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILK 60
Query: 237 GTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGP-LKCVKLDRARFE 295
G+ V+ + G D FG++AL+ D PRAA++V + +++D+ F
Sbjct: 61 GSVNVVIYGKGVVCTLHEG-----DDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFN 115
Query: 296 RVLGPC 301
R+L
Sbjct: 116 RILRDV 121
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 69.8 bits (170), Expect = 2e-15
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 71 IAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELV 130
+A LF L +I A+ G I G+ GD + + +G V V N
Sbjct: 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP-- 70
Query: 131 TSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLS 190
+G G FGE+ALI G PR+ATV A T V L L ++ + S + L
Sbjct: 71 VELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130
Query: 191 R 191
R
Sbjct: 131 R 131
Score = 63.2 bits (153), Expect = 4e-13
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 179 IRKRKLYE--EFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVE 236
+R+ + ++ V + + L + + +L + I R G+PGD + +VE
Sbjct: 1 VRRGDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 60
Query: 237 GTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFER 296
G+ V +LGP +FGE+AL+ PR+ATV A + + L A F+
Sbjct: 61 GSVSVATPNPV--------ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQM 112
Query: 297 VLGPCADILKR 307
+ +I +
Sbjct: 113 LCSSSPEIAEI 123
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 69.1 bits (168), Expect = 4e-15
Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
Query: 76 LFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNE-----LV 130
++S L+E R + + P C ++ ++GD +N + + +G++++ +
Sbjct: 8 VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHIS 67
Query: 131 TSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLS 190
V G FG ++T A + K+ + ++ +L G+T R +
Sbjct: 68 RIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 127
Query: 191 RVSILE 196
+ E
Sbjct: 128 ELGYAE 133
Score = 57.5 bits (138), Expect = 6e-11
Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 1/114 (0%)
Query: 194 ILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVE 253
+ L + ER + ++P + + +G ++ + + EG +
Sbjct: 8 VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKI-LREGVYGRFHI 66
Query: 254 VGKLGPSDYFGEIALLLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
+ P +FG + ++T +A K + + E +L +
Sbjct: 67 SRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRY 120
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 68.3 bits (166), Expect = 1e-14
Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 6/128 (4%)
Query: 54 KKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNF 113
K+ + + + + + + F N I + N G ++ QGD G N+
Sbjct: 9 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNW 68
Query: 114 YVIDQGEVEVY------VNNELVTSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDR 167
Y + G ++V + + G+ +++ TPR AT+ + +L +++
Sbjct: 69 YAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESILDNTPRHATIVTRESSELLRIEQ 128
Query: 168 DSYRRILM 175
+ ++ +
Sbjct: 129 EDFKALWE 136
Score = 62.5 bits (151), Expect = 1e-12
Identities = 20/143 (13%), Positives = 47/143 (32%), Gaps = 5/143 (3%)
Query: 165 LDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQ 224
LD+ R + + L V E + + + + RQ
Sbjct: 7 LDKRPLER-----SSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQ 61
Query: 225 GQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAATVVAKGPL 284
G G ++Y ++ G+ V + ++L + PR AT+V +
Sbjct: 62 GDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESILDNTPRHATIVTRESS 121
Query: 285 KCVKLDRARFERVLGPCADILKR 307
+ +++++ F+ + +
Sbjct: 122 ELLRIEQEDFKALWEKYRQYMAG 144
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel
6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 137
Score = 65.3 bits (158), Expect = 1e-13
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 15/122 (12%)
Query: 68 SKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNN 127
S + + LF ++DE I + + P ++ +GD + I +G +E +
Sbjct: 5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTD 64
Query: 128 ELVTSVGE------GGSFGELALIYGTPRAA---------TVRAKTDVKLWGLDRDSYRR 172
+ G G+ L + + TV+A T+V+ + L D +
Sbjct: 65 GGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKF 124
Query: 173 IL 174
+
Sbjct: 125 VA 126
Score = 55.7 bits (133), Expect = 2e-10
Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 9/121 (7%)
Query: 187 EFLSRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTV 246
+ RV + E++++ + + L+P F +K +VR+G P ++ I+ G +
Sbjct: 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65
Query: 247 EEESPVEVGKLGPSDYFGEIALLLDRPRAA---------TVVAKGPLKCVKLDRARFERV 297
L D+ G+ L + TV A ++ L + V
Sbjct: 66 GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125
Query: 298 L 298
Sbjct: 126 A 126
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 63.3 bits (153), Expect = 4e-13
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 196 ESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVG 255
++ E + K ++ QG+ + Y IV+G+ V EE + +
Sbjct: 1 QTDPTLEWF--LSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAV-LIKDEEGKEMILS 57
Query: 256 KLGPSDYFGEIALLLDR-PRAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
L D+ GE+ L + R+A V AK + ++ +F +++ DIL R
Sbjct: 58 YLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 110
Score = 61.4 bits (148), Expect = 2e-12
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 99 PGESIITQGDEGDNFYVIDQGEVEVYVNNELV-----TSVGEGGSFGELALIYGT-PRAA 152
++I QG++ + Y I +G V V + +E + + +G GEL L R+A
Sbjct: 20 SKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSA 79
Query: 153 TVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILE 196
VRAKT ++ + +R+++ + +L + R+ +
Sbjct: 80 WVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTS 123
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 61.6 bits (148), Expect = 5e-12
Identities = 33/121 (27%), Positives = 54/121 (44%)
Query: 71 IAKNVLFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELV 130
+A LF++ D N + + + PG+ II +G G Y I G V V
Sbjct: 70 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 129
Query: 131 TSVGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLS 190
+ +G FGE+ L+ R A+VRA T +L+ L D++ +L + +R +
Sbjct: 130 MKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID 189
Query: 191 R 191
R
Sbjct: 190 R 190
Score = 48.9 bits (115), Expect = 1e-07
Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 11/151 (7%)
Query: 162 LWGLDRDSYRRIL-----MGSTIRKRKLYEEFLSRVSILESLEKWERLTVADSLEPVSFQ 216
+ IL + ++ + + + + + L+ FQ
Sbjct: 38 RYQGKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQ 97
Query: 217 DKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIALLLDRPRAA 276
+ I+R+G G Y I G VL +E KL YFGEI LL R A
Sbjct: 98 PGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE------MKLSDGSYFGEICLLTRGRRTA 151
Query: 277 TVVAKGPLKCVKLDRARFERVLGPCADILKR 307
+V A + L F VL + +
Sbjct: 152 SVRADTYCRLYSLSVDNFNEVLEEYPMMRRA 182
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 53.7 bits (128), Expect = 1e-09
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Query: 99 PGESIITQGDEGDNFYVIDQGEVEVYV-----NNELVTSVGEGGSFGELALIYGTP---- 149
+II GD + + I +G V + + ++ + G FGEL L
Sbjct: 19 AKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQE 78
Query: 150 RAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILE 196
R+A VRAK + ++ + +R + + L + R+
Sbjct: 79 RSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTT 125
Score = 51.3 bits (122), Expect = 8e-09
Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 195 LESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTALVLQNTVEEESPVEV 254
L+ L+K + + K I+ G + + I++G+ + ++ + +
Sbjct: 2 LKHLDK-----LLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTI-LIEDDDGREMII 55
Query: 255 GKLGPSDYFGEIALLLDRP----RAATVVAKGPLKCVKLDRARFERVLGPCADILKR 307
G L D+FGE+ L R+A V AK + ++ A+F + ++IL
Sbjct: 56 GYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYT 112
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator
TM1171, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 129
Score = 47.7 bits (112), Expect = 1e-07
Identities = 15/125 (12%), Positives = 39/125 (31%), Gaps = 8/125 (6%)
Query: 87 DIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVY-----VNNELVTSVGEGGSFGE 141
+ + GE + Q D ++ ++ +G ++ + +
Sbjct: 5 KLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIAS 64
Query: 142 LALIYGTP-RAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEK 200
+ P V A + K+ + ++ + +LM ++ ++ EK
Sbjct: 65 GFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVS--EK 122
Query: 201 WERLT 205
LT
Sbjct: 123 LFFLT 127
>d2zcwa2 b.82.3.2 (A:6-117) Transcriptional regulator TTHA1359,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 112
Score = 47.3 bits (111), Expect = 1e-07
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 4/105 (3%)
Query: 211 EPVSFQDKEAIVRQGQPG--DDFYIIVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIAL 268
E VSF+ + I+ G PG D Y ++EG + E + F
Sbjct: 1 ETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLV--RPGGFFGEEA 58
Query: 269 LLDRPRAATVVAKGPLKCVKLDRARFERVLGPCADILKRNITQYN 313
L + R A ++ L +L A L + + +
Sbjct: 59 LFGQERIYFAEAATDVRLEPLPENPDPELLKDLAQHLSQGLAEAY 103
Score = 46.9 bits (110), Expect = 2e-07
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 95 VNCLPGESIITQGDEG--DNFYVIDQGEVEVY----VNNELVTSVGEGGSFGELALIYGT 148
V+ G+ I+ G G D Y + +G V + N L + G F ++G
Sbjct: 3 VSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGEEALFGQ 62
Query: 149 PRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSILESLEKWERLT 205
R A TDV+L L + +L + L + + E+ + ERL
Sbjct: 63 ERIYFAEAATDVRLEPLPENPDPELL-------KDLAQHLSQG--LAEAYRRIERLA 110
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300,
N-terminal domain {Bacteroides thetaiotaomicron [TaxId:
818]}
Length = 147
Score = 42.3 bits (98), Expect = 1e-05
Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 8/142 (5%)
Query: 64 MAALSKAIAKNVLFSHLDENTRSDIFDAMFP--VNCLPGESIITQGDEGDNFYVIDQGEV 121
M + + + LF L + I D + + GE+II G+ + +GE+
Sbjct: 1 METMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEI 60
Query: 122 EVYVNNE-----LVTSVGEGGSFGELALIYGTPRAATVRAK-TDVKLWGLDRDSYRRILM 175
+ N + ++ + +L A+ T+V + + L
Sbjct: 61 SIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLF 120
Query: 176 GSTIRKRKLYEEFLSRVSILES 197
I + +R L S
Sbjct: 121 RYDIFRLNYMNIVSNRAQNLYS 142
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 132
Score = 41.5 bits (96), Expect = 2e-05
Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 3/123 (2%)
Query: 76 LFSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTSVGE 135
+ + L F G + T + + +V+ G + VY+ E
Sbjct: 6 IANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLF 65
Query: 136 GGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSRVSIL 195
+ G+ ++ V A ++ D ++ + L L ++
Sbjct: 66 YLTSGD---MFCMHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSC 122
Query: 196 ESL 198
Sbjct: 123 MRT 125
Score = 38.9 bits (89), Expect = 2e-04
Identities = 6/50 (12%), Positives = 14/50 (28%)
Query: 190 SRVSILESLEKWERLTVADSLEPVSFQDKEAIVRQGQPGDDFYIIVEGTA 239
R +I L + T + + +++V+G
Sbjct: 2 PRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRL 51
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 139
Score = 35.4 bits (80), Expect = 0.003
Identities = 14/125 (11%), Positives = 40/125 (32%), Gaps = 8/125 (6%)
Query: 77 FSHLDENTRSDIFDAMFPVNCLPGESIITQGDEGDNFYVIDQGEVEVYVNNELVTS---- 132
+ + + G ++I G+E + + +G++++ + E +
Sbjct: 9 DNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLY 68
Query: 133 -VGEGGSFGELALIYGTPRAATVRAKTDVKLWGLDRDSYRRILMGSTIRKRKLYEEFLSR 191
G G+L A + S R + ++++ +L++
Sbjct: 69 YAGGNSLIGKLYPTGNNIY---ATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTK 125
Query: 192 VSILE 196
V+
Sbjct: 126 VAYYA 130
>d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]}
Length = 144
Score = 25.9 bits (57), Expect = 4.7
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 234 IVEGTALVLQNTVEEESPVEVGKLGPSDYFGEIAL 268
IV+G V+ ++ +P ++ +F ++AL
Sbjct: 75 IVKGLIAVVFILYDQMTPQDIVNFDVRPWFEKMAL 109
>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase
{Escherichia coli [TaxId: 562]}
Length = 190
Score = 25.9 bits (56), Expect = 5.1
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 42 EPVSEEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENTRSDIFDAMFPVNCLPGE 101
+ +++ D + ++ + + A+ S + + IF+ L
Sbjct: 82 DHINKVDLQNRPFRLNGDNGEYTC---DALIIATGASARYHSPNTAIFE---GQLELENG 135
Query: 102 SIITQGDEGDNFY------VIDQGEVEVYVNNELVTSVGEG 136
I Q N V G+V ++ + +TS G G
Sbjct: 136 YIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTG 176
>d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 241
Score = 25.6 bits (56), Expect = 7.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 170 YRRILMGSTIRKRKLYEEFLSRVSILESLEK 200
Y + + R R+L FLS V++L LE+
Sbjct: 208 YEKYIGIMIHRNRELLIRFLSEVNLLPLLER 238
>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated
protein 28, VPS28 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 104
Score = 24.4 bits (53), Expect = 9.5
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 177 STIRKRKLYEEFLSRVSILESLEKWERLTVADSLEP 212
T + +++ E SI+ +L+ E+ + DS++
Sbjct: 15 ITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDD 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.376
Gapped
Lambda K H
0.267 0.0416 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,135,633
Number of extensions: 52588
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 35
Length of query: 320
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,240,546
Effective search space: 291528310
Effective search space used: 291528310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (25.0 bits)