BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy18141
         (113 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
           Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
 pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
 pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
           Pfkfb
 pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
           Fructose-2,6-Bisphosphate
 pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
 pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
 pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
          Length = 520

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 55  LGIRGPKFAKPLGQSLDEQALNDLR 79
           L  RG KFA  L + ++EQ L DLR
Sbjct: 271 LSSRGKKFASALSKFVEEQNLKDLR 295


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,888,999
Number of Sequences: 62578
Number of extensions: 100980
Number of successful extensions: 217
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 1
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)