Query psy18141
Match_columns 113
No_of_seqs 118 out of 172
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 23:40:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j8p_A Cleavage stimulation fa 73.9 3.2 0.00011 25.3 3.1 27 69-95 18-44 (49)
2 3lay_A Zinc resistance-associa 63.1 4.1 0.00014 30.2 2.4 21 76-96 66-86 (175)
3 3o39_A Periplasmic protein rel 54.1 7.5 0.00026 26.6 2.3 20 77-96 17-36 (108)
4 3fx7_A Putative uncharacterize 52.2 14 0.00049 25.1 3.4 25 32-56 6-30 (94)
5 3itf_A Periplasmic adaptor pro 49.6 9.3 0.00032 27.4 2.3 18 77-94 45-62 (145)
6 1m48_A Interleukin-2; four-hel 45.3 14 0.00047 26.7 2.6 19 35-53 112-130 (133)
7 3oeo_A Spheroplast protein Y; 42.8 11 0.00037 26.4 1.7 20 77-96 33-52 (138)
8 4eba_G RNA15, KLLA0F09383P; HA 38.1 6.7 0.00023 29.2 0.0 27 69-95 142-168 (174)
9 3gor_A Putative metal-dependen 36.3 26 0.0009 22.7 2.8 21 35-55 5-25 (157)
10 3itf_A Periplasmic adaptor pro 34.9 31 0.001 24.6 3.1 22 73-94 114-135 (145)
11 3jyw_X 60S ribosomal protein L 34.2 24 0.00082 23.4 2.3 25 69-93 2-27 (86)
12 1vq8_V 50S ribosomal protein L 33.9 51 0.0017 20.8 3.7 25 70-94 4-29 (71)
13 3j21_W 50S ribosomal protein L 32.4 51 0.0017 20.8 3.5 23 71-93 2-25 (72)
14 1ny9_A Transcriptional activat 31.9 9.9 0.00034 26.1 0.0 31 11-42 99-131 (143)
15 3iz5_c 60S ribosomal protein L 31.5 55 0.0019 23.1 3.9 32 68-99 4-36 (124)
16 2v8f_A Profilin-2, profilin II 30.9 10 0.00034 26.8 -0.1 12 41-52 1-12 (140)
17 1f8p_A Neuropeptide Y (PNPY); 29.4 52 0.0018 18.8 2.8 24 31-54 11-34 (37)
18 2bf9_A Pancreatic hormone; tur 29.4 43 0.0015 19.1 2.5 23 31-53 11-33 (36)
19 4f7g_A Talin-1; alpha-helix bu 29.0 65 0.0022 23.2 4.1 39 5-43 78-118 (222)
20 1r73_A TM1492, 50S ribosomal p 28.8 36 0.0012 21.1 2.3 20 74-93 5-25 (66)
21 3nfq_A Transcription factor IW 27.8 16 0.00055 27.1 0.6 27 69-95 4-30 (170)
22 1mix_A Talin; focal adhesion, 26.5 71 0.0024 22.2 3.8 35 4-38 66-101 (206)
23 1nwd_B GAD, glutamate decarbox 25.5 68 0.0023 17.1 2.7 23 28-50 2-24 (28)
24 2g9w_A Conserved hypothetical 24.7 67 0.0023 21.3 3.2 24 73-96 102-125 (138)
25 2l60_A Peptide YY; GPCR ligand 23.9 66 0.0023 18.8 2.6 23 31-53 15-37 (41)
26 4a17_U RPL35, 60S ribosomal pr 23.7 87 0.003 22.0 3.8 29 69-97 4-33 (124)
27 2zkr_v 60S ribosomal protein L 22.9 83 0.0028 22.0 3.5 25 70-94 4-29 (123)
28 3v2d_2 50S ribosomal protein L 22.7 78 0.0027 19.9 3.1 24 70-93 8-32 (72)
29 3u5e_h 60S ribosomal protein L 22.2 88 0.003 21.8 3.5 25 70-94 4-29 (120)
30 1bba_A Bovine pancreatic polyp 21.8 92 0.0031 17.7 2.9 22 31-52 11-32 (36)
31 2kav_A Sodium channel protein 21.8 60 0.0021 22.8 2.6 16 32-47 37-52 (129)
32 1q23_A Chloramphenicol acetylt 21.4 78 0.0027 23.4 3.3 22 29-50 193-214 (219)
33 4efa_E V-type proton ATPase su 20.3 48 0.0016 24.4 1.9 34 75-108 5-39 (233)
No 1
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=73.90 E-value=3.2 Score=25.28 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=24.7
Q ss_pred CCCHHHHhhcCHHHHHHHHHHHHHhcC
Q psy18141 69 SLDEQALNDLRDDQIAQLYELMLAATQ 95 (113)
Q Consensus 69 ~L~~~~le~lsdEQi~QLyEL~~ea~k 95 (113)
.|+++.++.|.++|+.|.-.|++...+
T Consensus 18 sLt~eQI~~LPp~qR~qI~~LR~q~~~ 44 (49)
T 2j8p_A 18 QLTADQIAMLPPEQRQSILILKEQIQK 44 (49)
T ss_dssp TSCHHHHHTSCHHHHTHHHHHHHHHHC
T ss_pred hCCHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 799999999999999999999987664
No 2
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=63.09 E-value=4.1 Score=30.19 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=14.2
Q ss_pred hhcCHHHHHHHHHHHHHhcCC
Q psy18141 76 NDLRDDQIAQLYELMLAATQP 96 (113)
Q Consensus 76 e~lsdEQi~QLyEL~~ea~k~ 96 (113)
-.|||||..|+.+|+++....
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~ 86 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQ 86 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 358888888888887766543
No 3
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=54.12 E-value=7.5 Score=26.64 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=16.4
Q ss_pred hcCHHHHHHHHHHHHHhcCC
Q psy18141 77 DLRDDQIAQLYELMLAATQP 96 (113)
Q Consensus 77 ~lsdEQi~QLyEL~~ea~k~ 96 (113)
.|||+|..|+..||++....
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~ 36 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQ 36 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTS
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 36788999999999988654
No 4
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=52.16 E-value=14 Score=25.10 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc
Q psy18141 32 CNPSEAQVFMNEWAKYAVNLAEQLG 56 (113)
Q Consensus 32 ~np~~~~~Fl~eW~~Y~~~L~~Q~~ 56 (113)
+||+++..|..+=+.|.+.|....+
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~ 30 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVN 30 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999987653
No 5
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=49.58 E-value=9.3 Score=27.40 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=15.7
Q ss_pred hcCHHHHHHHHHHHHHhc
Q psy18141 77 DLRDDQIAQLYELMLAAT 94 (113)
Q Consensus 77 ~lsdEQi~QLyEL~~ea~ 94 (113)
.||++|..||..|+.+..
T Consensus 45 ~LTdeQkqqir~L~~~~r 62 (145)
T 3itf_A 45 SLTEHQRQQMRDLMQQAR 62 (145)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 489999999999998755
No 6
>1m48_A Interleukin-2; four-helix bundle, small molecule complex, cytokine; HET: FRG; 1.95A {Homo sapiens} SCOP: a.26.1.2 PDB: 1m47_A* 1m49_A* 1m4c_A 1pw6_A* 1z92_A 2b5i_A* 1py2_A* 3ink_C 2erj_D 1qvn_A* 1irl_A 1m4b_A* 1m4a_A* 1nbp_A* 3qb1_A 3qaz_A
Probab=45.33 E-value=14 Score=26.69 Aligned_cols=19 Identities=16% Similarity=0.553 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy18141 35 SEAQVFMNEWAKYAVNLAE 53 (113)
Q Consensus 35 ~~~~~Fl~eW~~Y~~~L~~ 53 (113)
.-|++||+.|-.+|..|-.
T Consensus 112 ~tivEFln~WItFCQsi~s 130 (133)
T 1m48_A 112 ATIVEFLNRWITFCQSIIS 130 (133)
T ss_dssp BCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4689999999999998753
No 7
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=42.77 E-value=11 Score=26.45 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=17.7
Q ss_pred hcCHHHHHHHHHHHHHhcCC
Q psy18141 77 DLRDDQIAQLYELMLAATQP 96 (113)
Q Consensus 77 ~lsdEQi~QLyEL~~ea~k~ 96 (113)
.||++|..||..|+.+...-
T Consensus 33 ~LT~eQ~~qir~i~~~~r~~ 52 (138)
T 3oeo_A 33 NLTDAQKQQIREIMKGQRDQ 52 (138)
T ss_dssp CCCTTHHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999998764
No 8
>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis}
Probab=38.06 E-value=6.7 Score=29.24 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCCHHHHhhcCHHHHHHHHHHHHHhcC
Q psy18141 69 SLDEQALNDLRDDQIAQLYELMLAATQ 95 (113)
Q Consensus 69 ~L~~~~le~lsdEQi~QLyEL~~ea~k 95 (113)
.|++++++.|.++|..++..|++++.|
T Consensus 142 ~Lt~~qI~~LP~deR~~I~~LR~qi~k 168 (174)
T 4eba_G 142 QLQDSDIAMLPQDEKMAVWELKQRAMK 168 (174)
T ss_dssp ---------------------------
T ss_pred cCCHHHHHhCCHHHHHHHHHHHHHHHc
Confidence 577888999999999999999998876
No 9
>3gor_A Putative metal-dependent hydrolase; structural genomics, DINB superfamily, PSI-2, protein structure initiative; 2.51A {Geobacillus stearothermophilus}
Probab=36.27 E-value=26 Score=22.67 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy18141 35 SEAQVFMNEWAKYAVNLAEQL 55 (113)
Q Consensus 35 ~~~~~Fl~eW~~Y~~~L~~Q~ 55 (113)
..+..|+.+|+.+...+.+-+
T Consensus 5 ~~~~~~l~~~~~~r~~t~~~l 25 (157)
T 3gor_A 5 SRAKKWVQYFLSHRHVTMELI 25 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999987776544
No 10
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=34.88 E-value=31 Score=24.64 Aligned_cols=22 Identities=27% Similarity=0.087 Sum_probs=17.6
Q ss_pred HHHhhcCHHHHHHHHHHHHHhc
Q psy18141 73 QALNDLRDDQIAQLYELMLAAT 94 (113)
Q Consensus 73 ~~le~lsdEQi~QLyEL~~ea~ 94 (113)
+..+-|+|||..||.+++++-.
T Consensus 114 qiy~vLTPEQk~ql~e~~~~r~ 135 (145)
T 3itf_A 114 QMYRLLTPEQQAVLNEKHQQRM 135 (145)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHH
Confidence 3456799999999999988653
No 11
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=34.19 E-value=24 Score=23.44 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=18.6
Q ss_pred CCCHHHHhhcCHHHH-HHHHHHHHHh
Q psy18141 69 SLDEQALNDLRDDQI-AQLYELMLAA 93 (113)
Q Consensus 69 ~L~~~~le~lsdEQi-~QLyEL~~ea 93 (113)
.|...+|..||++++ .+|.+|..|-
T Consensus 2 ~MKa~ELR~~S~eEL~~~L~eLK~EL 27 (86)
T 3jyw_X 2 GVKAYELRTKSKEQLASQLVDLKKEL 27 (86)
T ss_dssp CSCHHHHHTSCHHHHHHHHHHHTTTH
T ss_pred CCCHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456678899998887 6677877654
No 12
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=33.86 E-value=51 Score=20.76 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=17.7
Q ss_pred CCHHHHhhcCHHHH-HHHHHHHHHhc
Q psy18141 70 LDEQALNDLRDDQI-AQLYELMLAAT 94 (113)
Q Consensus 70 L~~~~le~lsdEQi-~QLyEL~~ea~ 94 (113)
+...+|..||++++ .+|.+|..|--
T Consensus 4 mk~~elr~~s~~EL~~~l~elk~ELf 29 (71)
T 1vq8_V 4 LHVQEIRDMTPAEREAELDDLKTELL 29 (71)
T ss_dssp SCHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55677888888887 56777776643
No 13
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.43 E-value=51 Score=20.85 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=15.3
Q ss_pred CHHHHhhcCHHHH-HHHHHHHHHh
Q psy18141 71 DEQALNDLRDDQI-AQLYELMLAA 93 (113)
Q Consensus 71 ~~~~le~lsdEQi-~QLyEL~~ea 93 (113)
...++..||++++ .+|.+|..|-
T Consensus 2 K~~elr~~s~~EL~~~L~elk~EL 25 (72)
T 3j21_W 2 KPSEIREMSIEEIDAKIRELRLQL 25 (72)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CHHHHhhCCHHHHHHHHHHHHHHH
Confidence 3456777887777 5677776654
No 14
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=31.93 E-value=9.9 Score=26.05 Aligned_cols=31 Identities=32% Similarity=0.529 Sum_probs=20.7
Q ss_pred ChHHHHhhhHHHHHH-HhhhcCC-CHHHHHHHHH
Q psy18141 11 PPELQILGHQYVRDE-FRRHKGC-NPSEAQVFMN 42 (113)
Q Consensus 11 P~~mR~LGD~YVK~E-FRrHk~~-np~~~~~Fl~ 42 (113)
|.-++.||+.||-|| |+.+-+- .|. ...||.
T Consensus 99 ~e~~~~L~~mYv~D~rF~~~~d~~~~G-la~fl~ 131 (143)
T 1ny9_A 99 YEMHTCLGEMYVSDERFTRNIDAAKPG-LAAYMR 131 (143)
T ss_dssp HHHHHHHHHHTTSTHHHHHHHGGGSTT-HHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHhHcccChh-HHHHHH
Confidence 356799999999855 8877754 443 344444
No 15
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=31.51 E-value=55 Score=23.05 Aligned_cols=32 Identities=22% Similarity=0.196 Sum_probs=24.2
Q ss_pred CCCCHHHHhhcCHHHH-HHHHHHHHHhcCCCcc
Q psy18141 68 QSLDEQALNDLRDDQI-AQLYELMLAATQPEVL 99 (113)
Q Consensus 68 ~~L~~~~le~lsdEQi-~QLyEL~~ea~k~~~~ 99 (113)
..+...+|..||+|++ .+|.+|..|--+....
T Consensus 4 ~~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRfq 36 (124)
T 3iz5_c 4 GKVKAGELWNKSKDDLTKQLAELKTELGQLRIQ 36 (124)
T ss_dssp CCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999988 7788888876554333
No 16
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=30.89 E-value=10 Score=26.77 Aligned_cols=12 Identities=42% Similarity=0.817 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q psy18141 41 MNEWAKYAVNLA 52 (113)
Q Consensus 41 l~eW~~Y~~~L~ 52 (113)
|++|+.|++.|-
T Consensus 1 MS~Wq~yvd~L~ 12 (140)
T 2v8f_A 1 MAGWQSYVDNLM 12 (140)
T ss_dssp -CTTHHHHHHHH
T ss_pred CchHHHHHHHHh
Confidence 446999999975
No 17
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=29.44 E-value=52 Score=18.84 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q psy18141 31 GCNPSEAQVFMNEWAKYAVNLAEQ 54 (113)
Q Consensus 31 ~~np~~~~~Fl~eW~~Y~~~L~~Q 54 (113)
+++|++...|++.-..|+..|..|
T Consensus 11 ~a~pEela~Y~~~Lr~YinlvTRq 34 (37)
T 1f8p_A 11 DAPAEDLARYYSALRHYINLITRQ 34 (37)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccc
Confidence 468999999999999999998765
No 18
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=29.44 E-value=43 Score=19.14 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy18141 31 GCNPSEAQVFMNEWAKYAVNLAE 53 (113)
Q Consensus 31 ~~np~~~~~Fl~eW~~Y~~~L~~ 53 (113)
+++|++...|++.-..|+..|..
T Consensus 11 dA~~Eela~Y~~~LrhYiNlvTR 33 (36)
T 2bf9_A 11 DAPVEDLIRFYNDLQQYLNVVTR 33 (36)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999988754
No 19
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=29.03 E-value=65 Score=23.16 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.3
Q ss_pred cchhcCChHH-HHhhhHHHHHHHhhhcCCCHHHHH-HHHHH
Q psy18141 5 TLHRGLPPEL-QILGHQYVRDEFRRHKGCNPSEAQ-VFMNE 43 (113)
Q Consensus 5 RlHR~LP~~m-R~LGD~YVK~EFRrHk~~np~~~~-~Fl~e 43 (113)
.+.+.||+.+ +..+..-|.+.++.|+..+|.++. .||..
T Consensus 78 ~l~~~lP~~~~~~~~~~~I~~~h~~~~g~s~~eA~~~yL~~ 118 (222)
T 4f7g_A 78 DLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKL 118 (222)
T ss_dssp CGGGTSCGGGGGGCCHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred chhhccCHHHHhhhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4556788775 455666788889999989999886 55543
No 20
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=28.77 E-value=36 Score=21.12 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=13.0
Q ss_pred HHhhcCHHHH-HHHHHHHHHh
Q psy18141 74 ALNDLRDDQI-AQLYELMLAA 93 (113)
Q Consensus 74 ~le~lsdEQi-~QLyEL~~ea 93 (113)
+|..||++++ .+|.+|..|-
T Consensus 5 elr~~s~~EL~~~l~elk~EL 25 (66)
T 1r73_A 5 ELRNYTDEELKNLLEEKKRQL 25 (66)
T ss_dssp HHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHH
Confidence 5677777776 4566666653
No 21
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=27.77 E-value=16 Score=27.09 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=20.9
Q ss_pred CCCHHHHhhcCHHHHHHHHHHHHHhcC
Q psy18141 69 SLDEQALNDLRDDQIAQLYELMLAATQ 95 (113)
Q Consensus 69 ~L~~~~le~lsdEQi~QLyEL~~ea~k 95 (113)
+-++++|+.+.||+|.+|.+=|.+|-.
T Consensus 4 ~~~~~dl~~~~Dd~i~~L~~~M~~Aa~ 30 (170)
T 3nfq_A 4 RRDEDDLEQYLDEKILRLKDEMNIAAQ 30 (170)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHhhhHHHHHHHHHHHHHHH
Confidence 456788999999999999999998863
No 22
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=26.53 E-value=71 Score=22.25 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=25.1
Q ss_pred hcchhcCChHHH-HhhhHHHHHHHhhhcCCCHHHHH
Q psy18141 4 ATLHRGLPPELQ-ILGHQYVRDEFRRHKGCNPSEAQ 38 (113)
Q Consensus 4 LRlHR~LP~~mR-~LGD~YVK~EFRrHk~~np~~~~ 38 (113)
+.+.+.||+.+. ..+..-|.+.++.|+..+|.++.
T Consensus 66 ~~~~~~lP~~~~~~~~~~~i~~~~~~~~g~s~~~A~ 101 (206)
T 1mix_A 66 LELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEAK 101 (206)
T ss_dssp SCGGGTSCGGGSTTCCHHHHHHHHHHTTTCCHHHHH
T ss_pred cchHhhCCHHHhhcccHHHHHHHHHHccCCCHHHHH
Confidence 445667887751 11156688999999999999986
No 23
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=25.49 E-value=68 Score=17.09 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=17.0
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHH
Q psy18141 28 RHKGCNPSEAQVFMNEWAKYAVN 50 (113)
Q Consensus 28 rHk~~np~~~~~Fl~eW~~Y~~~ 50 (113)
.||+.+.+--...++.|+.|...
T Consensus 2 shkktdsevqlemitawkkfvee 24 (28)
T 1nwd_B 2 SHKKTDSEVQLEMITAWKKFVEE 24 (28)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHH
Confidence 37777666556788999998864
No 24
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=24.71 E-value=67 Score=21.26 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=19.0
Q ss_pred HHHhhcCHHHHHHHHHHHHHhcCC
Q psy18141 73 QALNDLRDDQIAQLYELMLAATQP 96 (113)
Q Consensus 73 ~~le~lsdEQi~QLyEL~~ea~k~ 96 (113)
..++.||+|++.+|..+.....+.
T Consensus 102 ~~~~~ls~eE~~~L~~lL~~~~~~ 125 (138)
T 2g9w_A 102 HFVERVGADEADALRRALAELEAG 125 (138)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHC-
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhc
Confidence 336689999999999998877654
No 25
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=23.85 E-value=66 Score=18.80 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy18141 31 GCNPSEAQVFMNEWAKYAVNLAE 53 (113)
Q Consensus 31 ~~np~~~~~Fl~eW~~Y~~~L~~ 53 (113)
+++|++...|+++-..|+..+..
T Consensus 15 ~aspEela~Y~~~Lr~YinlvTR 37 (41)
T 2l60_A 15 KLSPEELNRYYASLRHYLNLVTR 37 (41)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhcc
Confidence 57999999999999999998853
No 26
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=23.73 E-value=87 Score=22.01 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=22.3
Q ss_pred CCCHHHHhhcCHHHH-HHHHHHHHHhcCCC
Q psy18141 69 SLDEQALNDLRDDQI-AQLYELMLAATQPE 97 (113)
Q Consensus 69 ~L~~~~le~lsdEQi-~QLyEL~~ea~k~~ 97 (113)
.+...+|..||+|++ .+|.+|..|--+..
T Consensus 4 ~mKa~ELR~~s~eEL~~~L~eLK~ELf~LR 33 (124)
T 4a17_U 4 SVRVFKLRTQTEEQLVGELGKLQTELSQLR 33 (124)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 466788999999888 77888887765443
No 27
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.94 E-value=83 Score=22.05 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=16.9
Q ss_pred CCHHHHhhcCHHHH-HHHHHHHHHhc
Q psy18141 70 LDEQALNDLRDDQI-AQLYELMLAAT 94 (113)
Q Consensus 70 L~~~~le~lsdEQi-~QLyEL~~ea~ 94 (113)
+...+|..||+|++ .+|.+|..|--
T Consensus 4 mK~~ELR~~s~eEL~~~L~eLK~ELf 29 (123)
T 2zkr_v 4 IKARDLRGKKKEELLKQLDDLKVELS 29 (123)
T ss_dssp CCHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45667888887777 56677766543
No 28
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=22.70 E-value=78 Score=19.95 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=16.3
Q ss_pred CCHHHHhhcCHHHH-HHHHHHHHHh
Q psy18141 70 LDEQALNDLRDDQI-AQLYELMLAA 93 (113)
Q Consensus 70 L~~~~le~lsdEQi-~QLyEL~~ea 93 (113)
+...++..+|++++ .+|.+|..|-
T Consensus 8 mK~~elr~~s~eEL~~~L~elk~EL 32 (72)
T 3v2d_2 8 KQLEEARKLSPVELEKLVREKKREL 32 (72)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34566778888777 5677776664
No 29
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=22.21 E-value=88 Score=21.82 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=18.4
Q ss_pred CCHHHHhhcCHHHH-HHHHHHHHHhc
Q psy18141 70 LDEQALNDLRDDQI-AQLYELMLAAT 94 (113)
Q Consensus 70 L~~~~le~lsdEQi-~QLyEL~~ea~ 94 (113)
+...+|..||+|++ .+|.+|..|--
T Consensus 4 mK~~ELR~~s~eEL~~~L~eLK~ELf 29 (120)
T 3u5e_h 4 VKAYELRTKSKEQLASQLVDLKKELA 29 (120)
T ss_dssp CCHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55677888888887 67788876643
No 30
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=21.80 E-value=92 Score=17.72 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q psy18141 31 GCNPSEAQVFMNEWAKYAVNLA 52 (113)
Q Consensus 31 ~~np~~~~~Fl~eW~~Y~~~L~ 52 (113)
+++|+++..|++.-..|+..|.
T Consensus 11 dA~pEela~Y~~~Lr~YiNlvT 32 (36)
T 1bba_A 11 NATPEQMAQYAAELRRYINMLT 32 (36)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHhh
Confidence 5689999999999999998874
No 31
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=21.77 E-value=60 Score=22.77 Aligned_cols=16 Identities=19% Similarity=0.654 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHH
Q psy18141 32 CNPSEAQVFMNEWAKY 47 (113)
Q Consensus 32 ~np~~~~~Fl~eW~~Y 47 (113)
++|.++..|..-|..|
T Consensus 37 l~~~dl~~F~~~W~~f 52 (129)
T 2kav_A 37 LSEDDFEMFYEVWEKF 52 (129)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 5999999999999998
No 32
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=21.42 E-value=78 Score=23.37 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.2
Q ss_pred hcCCCHHHHHHHHHHHHHHHHH
Q psy18141 29 HKGCNPSEAQVFMNEWAKYAVN 50 (113)
Q Consensus 29 Hk~~np~~~~~Fl~eW~~Y~~~ 50 (113)
|+-++-.++..||..++.|++.
T Consensus 193 HRvvDG~~aa~Fl~~lk~~le~ 214 (219)
T 1q23_A 193 HAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHH
T ss_pred chhhChHHHHHHHHHHHHHHhC
Confidence 7888999999999999999985
No 33
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=20.35 E-value=48 Score=24.42 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=20.8
Q ss_pred HhhcCHHHH-HHHHHHHHHhcCCCcchHHHHHHHH
Q psy18141 75 LNDLRDDQI-AQLYELMLAATQPEVLEAEEAQAKA 108 (113)
Q Consensus 75 le~lsdEQi-~QLyEL~~ea~k~~~~~~~~~~~~~ 108 (113)
+..|||+|+ .||..++.-+.......+++..++|
T Consensus 5 ~~al~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kA 39 (233)
T 4efa_E 5 ITALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKA 39 (233)
T ss_dssp BCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899998 4677666555444444555544444
Done!