Query psy18141
Match_columns 113
No_of_seqs 118 out of 172
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 23:40:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18141.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/18141hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m47a_ a.26.1.2 (A:) Interleu 39.2 9.2 0.00067 25.7 2.6 19 34-52 106-124 (128)
2 d1vqov1 a.2.2.1 (V:1-65) Ribos 33.1 23 0.0017 20.4 3.5 21 72-92 5-26 (65)
3 d1ijwc_ a.4.1.2 (C:) HIN recom 33.1 13 0.00093 20.5 2.1 16 77-92 5-20 (47)
4 d1ef1a1 a.11.2.1 (A:88-198) Mo 27.3 41 0.003 20.2 4.2 39 4-42 60-106 (111)
5 d1q23a_ c.43.1.1 (A:) Chloramp 26.8 25 0.0018 24.0 3.3 22 29-50 189-210 (214)
6 d2e1oa1 a.4.1.1 (A:8-64) Homeo 26.7 42 0.0031 18.4 3.8 26 77-102 6-31 (57)
7 d1le8a_ a.4.1.1 (A:) Mating ty 25.7 47 0.0034 17.9 3.8 26 77-102 3-28 (53)
8 d1p7ia_ a.4.1.1 (A:) Engrailed 24.7 35 0.0025 18.5 3.1 26 77-102 5-30 (53)
9 d1jgga_ a.4.1.1 (A:) Even-skip 24.1 51 0.0037 18.0 3.8 26 77-102 5-30 (57)
10 d2gycw1 a.2.2.1 (W:1-60) Ribos 23.0 47 0.0035 18.6 3.5 25 71-95 2-27 (60)
11 d1t3wa_ a.236.1.1 (A:) DNA pri 21.9 30 0.0022 21.5 2.7 20 76-95 115-134 (134)
12 d1ypra_ d.110.1.1 (A:) Profili 21.2 13 0.00097 23.6 0.8 10 43-52 1-10 (125)
13 d1h4ra1 a.11.2.1 (A:104-214) M 21.1 52 0.0038 19.7 3.7 39 4-42 60-106 (111)
No 1
>d1m47a_ a.26.1.2 (A:) Interleukin-2 (IL-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.23 E-value=9.2 Score=25.70 Aligned_cols=19 Identities=16% Similarity=0.552 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy18141 34 PSEAQVFMNEWAKYAVNLA 52 (113)
Q Consensus 34 p~~~~~Fl~eW~~Y~~~L~ 52 (113)
..-|+.||+.|-.+|..|-
T Consensus 106 t~tivEFLn~WItFCQsi~ 124 (128)
T d1m47a_ 106 TATIVEFLNRWITFCQSII 124 (128)
T ss_dssp CBCHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHH
Confidence 4468999999999999875
No 2
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=33.15 E-value=23 Score=20.43 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=10.2
Q ss_pred HHHHhhcCHHHH-HHHHHHHHH
Q psy18141 72 EQALNDLRDDQI-AQLYELMLA 92 (113)
Q Consensus 72 ~~~le~lsdEQi-~QLyEL~~e 92 (113)
..++..||++++ .+|.+|.+|
T Consensus 5 ~~elr~ls~~eL~~~l~elk~E 26 (65)
T d1vqov1 5 VQEIRDMTPAEREAELDDLKTE 26 (65)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 345555555555 334444433
No 3
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=33.09 E-value=13 Score=20.48 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=13.6
Q ss_pred hcCHHHHHHHHHHHHH
Q psy18141 77 DLRDDQIAQLYELMLA 92 (113)
Q Consensus 77 ~lsdEQi~QLyEL~~e 92 (113)
+||+||+.+..+|...
T Consensus 5 ~lt~~q~~~a~~l~~~ 20 (47)
T d1ijwc_ 5 AINKHEQEQISRLLEK 20 (47)
T ss_dssp SSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHC
Confidence 6899999999988853
No 4
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.26 E-value=41 Score=20.23 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=25.6
Q ss_pred hcchhcCChHHHHhhh-------HHHHHHHhhhcCCCHHHHH-HHHH
Q psy18141 4 ATLHRGLPPELQILGH-------QYVRDEFRRHKGCNPSEAQ-VFMN 42 (113)
Q Consensus 4 LRlHR~LP~~mR~LGD-------~YVK~EFRrHk~~np~~~~-~Fl~ 42 (113)
|+.-+.||+....... ..|..+++.|+..+|.++. .||.
T Consensus 60 l~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~l~g~s~~~A~~~fL~ 106 (111)
T d1ef1a1 60 LAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLK 106 (111)
T ss_dssp TTTCCCSCHHHHHHBCCCHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHhcCchHHHhcccccHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 3444568886644332 2477788888888888884 5654
No 5
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=26.82 E-value=25 Score=24.04 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHHH
Q psy18141 29 HKGCNPSEAQVFMNEWAKYAVN 50 (113)
Q Consensus 29 Hk~~np~~~~~Fl~eW~~Y~~~ 50 (113)
|+-++-.|+-.|++.++.|++.
T Consensus 189 HrvvDG~~~a~Fl~~lq~~le~ 210 (214)
T d1q23a_ 189 HAVCDGFHVGRMLNELQQYCDE 210 (214)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhh
Confidence 7778999999999999999985
No 6
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.71 E-value=42 Score=18.42 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=20.3
Q ss_pred hcCHHHHHHHHHHHHHhcCCCcchHH
Q psy18141 77 DLRDDQIAQLYELMLAATQPEVLEAE 102 (113)
Q Consensus 77 ~lsdEQi~QLyEL~~ea~k~~~~~~~ 102 (113)
.||++|+..|...-.....|....-+
T Consensus 6 ~ft~~Q~~~Le~~F~~n~yp~~~~r~ 31 (57)
T d2e1oa1 6 RFSNDQTIELEKKFETQKYLSPPERK 31 (57)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHH
Confidence 48899999999999887777655444
No 7
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.67 E-value=47 Score=17.91 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=20.1
Q ss_pred hcCHHHHHHHHHHHHHhcCCCcchHH
Q psy18141 77 DLRDDQIAQLYELMLAATQPEVLEAE 102 (113)
Q Consensus 77 ~lsdEQi~QLyEL~~ea~k~~~~~~~ 102 (113)
.||++|+.-|-+.-.+...|....-+
T Consensus 3 ~~s~~q~~~Le~~F~~~~~P~~~~~~ 28 (53)
T d1le8a_ 3 SISPQARAFLEQVFRRKQSLNSKEKE 28 (53)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999887766555443
No 8
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=24.74 E-value=35 Score=18.47 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=19.9
Q ss_pred hcCHHHHHHHHHHHHHhcCCCcchHH
Q psy18141 77 DLRDDQIAQLYELMLAATQPEVLEAE 102 (113)
Q Consensus 77 ~lsdEQi~QLyEL~~ea~k~~~~~~~ 102 (113)
.||++|+..|...-+....|....-+
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~ 30 (53)
T d1p7ia_ 5 AFSSEQLARLKREFNENRYLTERRRQ 30 (53)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCCHHHHH
Confidence 48999999999999887766655433
No 9
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=24.10 E-value=51 Score=18.01 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=19.9
Q ss_pred hcCHHHHHHHHHHHHHhcCCCcchHH
Q psy18141 77 DLRDDQIAQLYELMLAATQPEVLEAE 102 (113)
Q Consensus 77 ~lsdEQi~QLyEL~~ea~k~~~~~~~ 102 (113)
.||++|+..|...-....-|....-+
T Consensus 5 ~fT~~Ql~~Le~~F~~~~yp~~~~r~ 30 (57)
T d1jgga_ 5 AFTRDQLGRLEKEFYKENYVSRPRRC 30 (57)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHH
Confidence 37999999999988887776655443
No 10
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]}
Probab=22.95 E-value=47 Score=18.58 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=18.0
Q ss_pred CHHHHhhcCHHHH-HHHHHHHHHhcC
Q psy18141 71 DEQALNDLRDDQI-AQLYELMLAATQ 95 (113)
Q Consensus 71 ~~~~le~lsdEQi-~QLyEL~~ea~k 95 (113)
...++..||++++ ..|.+|.+|-..
T Consensus 2 k~~elr~ls~~eL~~~l~~l~~el~~ 27 (60)
T d2gycw1 2 KAKELREKSVEELNTELLNLLREQFN 27 (60)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4567888999988 557777777543
No 11
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.90 E-value=30 Score=21.54 Aligned_cols=20 Identities=15% Similarity=0.317 Sum_probs=16.3
Q ss_pred hhcCHHHHHHHHHHHHHhcC
Q psy18141 76 NDLRDDQIAQLYELMLAATQ 95 (113)
Q Consensus 76 e~lsdEQi~QLyEL~~ea~k 95 (113)
..||+|.+.+|.+|+++-.|
T Consensus 115 ~~Lt~eEk~eL~~L~~~l~k 134 (134)
T d1t3wa_ 115 HGLSNEERLELWTLNQELAK 134 (134)
T ss_dssp TCCCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhhC
Confidence 35899999999999988654
No 12
>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.18 E-value=13 Score=23.61 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=8.7
Q ss_pred HHHHHHHHHH
Q psy18141 43 EWAKYAVNLA 52 (113)
Q Consensus 43 eW~~Y~~~L~ 52 (113)
+|+.|.+.|-
T Consensus 1 SWq~Yvd~L~ 10 (125)
T d1ypra_ 1 SWQAYTDNLI 10 (125)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHhHh
Confidence 6999999875
No 13
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.12 E-value=52 Score=19.66 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=24.3
Q ss_pred hcchhcCChHHHHhhh-------HHHHHHHhhhcCCCHHHHH-HHHH
Q psy18141 4 ATLHRGLPPELQILGH-------QYVRDEFRRHKGCNPSEAQ-VFMN 42 (113)
Q Consensus 4 LRlHR~LP~~mR~LGD-------~YVK~EFRrHk~~np~~~~-~Fl~ 42 (113)
++..+.+|+.+...-+ +-|-.+++.|+..+|.++. .||.
T Consensus 60 ~~~~~~~P~~~~~~~~~~~~~~~~~I~~~hk~l~G~s~~~A~~~yL~ 106 (111)
T d1h4ra1 60 LAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLK 106 (111)
T ss_dssp TTTCCCSCHHHHTTSCCCHHHHHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred hhhhhcCCchHHHHhhccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445568877643311 3455678888888888874 4553
Done!