RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy18141
         (113 letters)



>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
           actin-crosslinking, structural protein; 2.00A
           {Schizosaccharomyces pombe} SCOP: a.40.1.1
          Length = 513

 Score = 27.0 bits (59), Expect = 1.7
 Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 45  AKYAVNLAEQLGIRGPKFAKP 65
           A+ A+++A +LG     F  P
Sbjct: 474 ARLAISIARKLGA--VIFILP 492


>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI;
           2.20A {Vibrio cholerae}
          Length = 298

 Score = 25.4 bits (55), Expect = 5.4
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 72  EQALNDLRDDQIAQLYELMLAATQPEVLEAEEAQAKAAQAAM 113
           EQAL  +       L EL+LA        AE+ Q     + +
Sbjct: 9   EQALQQMPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGL 50


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.0 bits (54), Expect = 8.0
 Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 5/22 (22%)

Query: 67  GQSLDEQALNDLRDDQIAQLYE 88
           GQ   +    +LRD     LY+
Sbjct: 162 GQGNTDDYFEELRD-----LYQ 178


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,747,428
Number of extensions: 95205
Number of successful extensions: 299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 19
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)