RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18141
         (113 letters)



>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 500

 Score = 25.3 bits (55), Expect = 2.1
 Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)

Query: 33  NPSEAQVFMNEWAKYAVNLAEQLGIRGPKFAKP 65
              E        A Y V++A +LG     F  P
Sbjct: 445 TKGETDDEKRLNATYIVSVARKLGC--SVFLLP 475


>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 505

 Score = 25.0 bits (54), Expect = 2.5
 Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 45  AKYAVNLAEQLGIRGPKFAKP 65
           A+ A+++A +LG     F  P
Sbjct: 466 ARLAISIARKLGA--VIFILP 484


>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
          Length = 62

 Score = 22.1 bits (47), Expect = 9.8
 Identities = 3/18 (16%), Positives = 7/18 (38%)

Query: 19 HQYVRDEFRRHKGCNPSE 36
           Q +   F+ +    P +
Sbjct: 29 QQTLTRTFKNYFDVPPHK 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 397,480
Number of extensions: 16375
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 12
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)