Query psy1815
Match_columns 238
No_of_seqs 115 out of 194
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 23:51:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14633 SH2_2: SH2 domain; PD 100.0 5.2E-67 1.1E-71 461.3 17.9 163 1-166 56-220 (220)
2 KOG1856|consensus 100.0 5.4E-58 1.2E-62 465.8 16.7 167 1-170 1126-1292(1299)
3 KOG0790|consensus 99.8 4.3E-18 9.3E-23 163.0 12.5 154 3-170 26-204 (600)
4 smart00252 SH2 Src homology 2 98.6 9.6E-08 2.1E-12 70.7 7.1 59 3-69 22-81 (84)
5 cd00173 SH2 Src homology 2 dom 98.6 1.6E-07 3.4E-12 70.2 7.4 62 2-70 20-81 (94)
6 PF00017 SH2: SH2 domain; Int 98.6 1.4E-07 2.9E-12 68.9 6.7 58 2-66 20-77 (77)
7 cd00173 SH2 Src homology 2 dom 98.6 3.3E-07 7.1E-12 68.5 8.5 80 81-167 1-82 (94)
8 smart00252 SH2 Src homology 2 98.6 6.7E-07 1.5E-11 66.1 9.3 80 80-166 1-82 (84)
9 PF00017 SH2: SH2 domain; Int 98.5 3.3E-07 7.2E-12 66.9 6.6 75 82-162 1-77 (77)
10 KOG1264|consensus 98.0 4.7E-05 1E-09 78.6 11.3 154 2-166 561-727 (1267)
11 KOG4792|consensus 97.3 0.00052 1.1E-08 62.3 6.6 89 80-175 11-107 (293)
12 KOG1264|consensus 97.0 0.0027 5.8E-08 66.1 8.2 88 79-167 533-626 (1267)
13 KOG4226|consensus 96.9 0.0024 5.1E-08 59.5 6.4 57 3-68 303-359 (379)
14 KOG4226|consensus 96.5 0.011 2.3E-07 55.2 7.9 85 78-168 279-363 (379)
15 KOG0790|consensus 96.2 0.012 2.6E-07 58.0 6.4 83 78-166 2-85 (600)
16 KOG0194|consensus 94.1 0.26 5.6E-06 48.8 8.7 84 78-170 47-137 (474)
17 PF14633 SH2_2: SH2 domain; PD 94.1 0.39 8.4E-06 43.1 9.1 82 72-162 30-121 (220)
18 KOG4637|consensus 94.0 0.15 3.3E-06 49.3 6.6 85 75-166 18-103 (464)
19 KOG4792|consensus 93.0 0.28 6.1E-06 44.9 6.4 62 3-66 32-94 (293)
20 KOG3601|consensus 92.8 0.02 4.3E-07 51.3 -1.2 116 39-166 15-138 (222)
21 KOG2996|consensus 89.7 0.63 1.4E-05 47.6 5.6 59 2-68 705-763 (865)
22 KOG2996|consensus 88.8 1.2 2.6E-05 45.7 6.8 124 30-166 630-765 (865)
23 KOG0194|consensus 88.6 1.6 3.4E-05 43.4 7.4 61 2-70 67-133 (474)
24 KOG0197|consensus 86.6 1.3 2.9E-05 43.9 5.6 89 75-168 76-174 (468)
25 KOG1930|consensus 86.4 0.98 2.1E-05 44.4 4.5 152 2-168 232-411 (483)
26 KOG4278|consensus 86.2 1.4 3E-05 46.1 5.6 58 3-67 173-230 (1157)
27 KOG4637|consensus 75.8 6.8 0.00015 38.3 5.9 70 90-165 340-411 (464)
28 KOG1856|consensus 74.2 14 0.0003 40.7 8.3 81 71-160 1099-1189(1299)
29 KOG0197|consensus 73.5 6.6 0.00014 39.1 5.4 64 2-70 103-172 (468)
30 PF11831 Myb_Cef: pre-mRNA spl 70.1 4.9 0.00011 36.1 3.4 27 181-208 9-35 (231)
31 PF11149 DUF2924: Protein of u 65.5 5.9 0.00013 33.3 2.8 24 137-160 97-120 (136)
32 KOG4278|consensus 64.7 13 0.00027 39.3 5.4 94 62-166 138-233 (1157)
33 KOG1785|consensus 56.2 45 0.00098 33.2 7.3 64 62-130 234-301 (563)
34 PF02762 Cbl_N3: CBL proto-onc 56.2 22 0.00047 27.6 4.2 73 79-166 1-73 (86)
35 PRK00907 hypothetical protein; 56.1 13 0.00028 29.1 3.0 21 3-24 47-67 (92)
36 KOG3601|consensus 54.9 2.3 4.9E-05 38.4 -1.6 63 2-72 78-140 (222)
37 KOG1930|consensus 53.5 38 0.00082 33.7 6.3 80 72-159 205-303 (483)
38 PF15599 Imm38: Immunity prote 51.1 76 0.0016 25.7 6.9 44 21-75 36-79 (124)
39 COG2921 Uncharacterized conser 48.7 19 0.00041 28.4 2.8 17 6-23 48-64 (90)
40 PLN02366 spermidine synthase 47.7 45 0.00098 31.1 5.7 43 16-63 27-76 (308)
41 TIGR00417 speE spermidine synt 46.9 42 0.0009 30.1 5.2 42 17-63 9-57 (270)
42 KOG1999|consensus 46.6 33 0.00071 37.2 5.1 26 182-208 789-815 (1024)
43 PF14822 Vasohibin: Vasohibin 46.4 42 0.00091 30.9 5.1 60 13-72 128-193 (246)
44 PF06306 CgtA: Beta-1,4-N-acet 40.5 43 0.00093 32.2 4.4 80 62-150 101-192 (347)
45 KOG2179|consensus 38.2 14 0.0003 38.4 0.8 62 54-129 418-480 (669)
46 cd02062 Nitro_FMN_reductase Pr 37.0 1.2E+02 0.0026 22.7 5.7 50 79-129 6-57 (122)
47 PTZ00015 histone H4; Provision 35.3 34 0.00073 27.5 2.4 49 50-101 47-95 (102)
48 KOG0555|consensus 34.9 97 0.0021 31.0 5.9 115 55-172 340-496 (545)
49 PHA03378 EBNA-3B; Provisional 33.9 1.5E+02 0.0033 31.6 7.4 6 200-205 739-744 (991)
50 COG5634 Uncharacterized conser 33.6 3.5E+02 0.0075 24.3 8.6 120 6-131 13-154 (223)
51 PLN02823 spermine synthase 33.6 1.2E+02 0.0025 28.8 6.1 47 18-71 41-94 (336)
52 smart00576 BTP Bromodomain tra 32.9 93 0.002 22.9 4.4 42 56-100 29-70 (77)
53 PLN00035 histone H4; Provision 32.9 40 0.00086 27.1 2.5 49 50-101 46-94 (103)
54 PRK10486 autoinducer-2 (AI-2) 32.8 1.4E+02 0.0029 22.7 5.4 38 89-126 13-53 (96)
55 PF04026 SpoVG: SpoVG; InterP 32.6 87 0.0019 24.1 4.3 58 1-59 1-60 (84)
56 smart00803 TAF TATA box bindin 31.2 36 0.00079 24.7 1.9 46 50-98 19-64 (65)
57 PRK10151 ribosomal-protein-L7/ 30.9 2.8E+02 0.0061 22.3 8.2 110 48-165 10-124 (179)
58 PRK00536 speE spermidine synth 30.2 90 0.0019 28.7 4.7 60 16-82 9-95 (262)
59 PHA03120 tegument protein VP22 30.0 36 0.00078 31.6 2.0 25 54-78 94-120 (310)
60 KOG1979|consensus 29.9 95 0.0021 32.3 5.1 70 1-83 19-97 (694)
61 PHA03378 EBNA-3B; Provisional 29.1 2.1E+02 0.0046 30.6 7.4 20 191-210 740-759 (991)
62 KOG3697|consensus 29.0 79 0.0017 30.2 4.1 50 117-167 276-326 (345)
63 PRK02047 hypothetical protein; 27.8 69 0.0015 24.7 3.0 18 6-24 49-66 (91)
64 PF03991 Prion_octapep: Copper 27.5 35 0.00075 15.7 0.8 7 192-198 1-7 (8)
65 COG0196 RibF FAD synthase [Coe 27.3 1E+02 0.0022 29.1 4.6 13 53-65 279-291 (304)
66 PF01564 Spermine_synth: Sperm 26.7 1.5E+02 0.0033 26.4 5.5 62 15-83 11-100 (246)
67 KOG3645|consensus 26.4 54 0.0012 32.0 2.7 34 5-40 42-75 (449)
68 PF07624 PSD2: Protein of unkn 25.5 2.2E+02 0.0048 20.9 5.3 54 52-105 2-59 (76)
69 PRK10507 bifunctional glutathi 25.3 1.2E+02 0.0027 31.3 5.1 37 2-41 113-152 (619)
70 PF01687 Flavokinase: Riboflav 24.6 57 0.0012 26.6 2.1 23 44-66 84-113 (125)
71 PF05582 Peptidase_U57: YabG p 24.1 6.2E+02 0.013 23.9 10.2 67 88-158 112-179 (287)
72 PF05257 CHAP: CHAP domain; I 23.4 1.9E+02 0.0041 22.5 4.9 36 2-40 64-102 (124)
73 PF05751 FixH: FixH; InterPro 23.3 1.7E+02 0.0037 23.3 4.7 28 7-36 92-120 (146)
74 PF13420 Acetyltransf_4: Acety 22.6 2.7E+02 0.0058 21.5 5.6 72 89-162 32-105 (155)
75 PF04359 DUF493: Protein of un 22.5 95 0.0021 23.1 2.8 21 3-24 40-60 (85)
76 PRK00341 hypothetical protein; 22.2 94 0.002 24.1 2.8 18 5-23 48-65 (91)
77 PF07535 zf-DBF: DBF zinc fing 22.1 35 0.00076 23.8 0.4 14 52-65 33-46 (49)
78 PRK01581 speE spermidine synth 22.0 1.6E+02 0.0036 28.6 5.0 37 27-72 105-142 (374)
79 PF03791 KNOX2: KNOX2 domain ; 21.9 1E+02 0.0022 21.9 2.7 23 58-80 10-32 (52)
80 PF11465 Receptor_2B4: Natural 21.7 93 0.002 25.3 2.7 21 6-26 16-36 (108)
81 PHA00743 helix-turn-helix prot 21.6 2E+02 0.0042 20.5 4.0 37 56-99 1-37 (51)
82 KOG0132|consensus 21.5 1.4E+02 0.0031 31.9 4.8 86 46-134 421-520 (894)
83 cd06589 GH31 The enzymes of gl 21.1 2.9E+02 0.0064 24.6 6.2 53 89-164 21-77 (265)
84 cd00076 H4 Histone H4, one of 20.9 96 0.0021 24.0 2.6 49 50-101 30-78 (85)
85 PF10827 DUF2552: Protein of u 20.6 1.3E+02 0.0029 23.0 3.2 31 138-168 44-74 (79)
86 PF00159 Hormone_3: Pancreatic 20.4 1.4E+02 0.0031 19.7 3.0 28 54-82 9-36 (36)
87 KOG1690|consensus 20.3 2.4E+02 0.0053 25.5 5.3 55 21-85 112-166 (215)
88 PRK00811 spermidine synthase; 20.2 1.9E+02 0.0041 26.3 4.8 42 16-62 12-60 (283)
No 1
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=100.00 E-value=5.2e-67 Score=461.31 Aligned_cols=163 Identities=60% Similarity=1.059 Sum_probs=149.9
Q ss_pred CCCccEEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1815 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVSPMAANVRELLSF 80 (238)
Q Consensus 1 ~~~Ge~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV~pm~~~v~dl~~H 80 (238)
+++|||||||||||.|||+|||||+|||||||||+|.+|+|++|||++|+|++++|+||||||+|||+||+++|+||++|
T Consensus 56 ~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~~~~yeDLDEii~r~V~pm~~~v~~~~~h 135 (220)
T PF14633_consen 56 QDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIGGEEYEDLDEIIARHVEPMARNVEEMMNH 135 (220)
T ss_dssp S-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEETTEEESSHHHHHHHCHHHHHHHHHHHHCS
T ss_pred CCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEECCeEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEE--EEEeeCceEeccccccCHHHH
Q psy1815 81 RYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEF--ISVTPEGFRFRGQQFDSVNSL 158 (238)
Q Consensus 81 rkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~--I~V~p~Gf~fr~~~f~sl~~L 158 (238)
|||++ |+++++|++|++||++||++|||+||+++++||+|+|+|+++.++++++ |+|+|+||+|++++|+||++|
T Consensus 136 ~kf~~---g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~~~PG~F~L~y~~~~~~~~~~~~v~V~p~Gf~~r~~~f~~~~~L 212 (220)
T PF14633_consen 136 RKFKD---GTKEEVEEWLKEEKKANPKRIPYAFCISKEHPGYFILSYKPNKNPRHEYWPVKVTPDGFRFRKQVFPSLDRL 212 (220)
T ss_dssp TTEES---S-CCCCHHHHHCHHHHSTTS-EEEEEE-TTSTTEEEEEEESSTTS-EEEEEEEE-SSSEEETTEEESSHHHH
T ss_pred ccccC---CCHHHHHHHHHHHHHhCCCCceEEEEECCCCCCEEEEEEEcCCCCceEEeeEEEecCcEEEecccCCCHHHH
Confidence 99995 8999999999999999999999999999999999999999999998765 999999999999999999999
Q ss_pred HHHHHhcc
Q psy1815 159 FRWFKEHF 166 (238)
Q Consensus 159 i~~FK~~~ 166 (238)
|+|||+||
T Consensus 213 ~~~FK~~~ 220 (220)
T PF14633_consen 213 INWFKKHY 220 (220)
T ss_dssp HHHHHHH-
T ss_pred HHHHhhcC
Confidence 99999986
No 2
>KOG1856|consensus
Probab=100.00 E-value=5.4e-58 Score=465.84 Aligned_cols=167 Identities=60% Similarity=1.081 Sum_probs=164.9
Q ss_pred CCCccEEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1815 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVSPMAANVRELLSF 80 (238)
Q Consensus 1 ~~~Ge~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV~pm~~~v~dl~~H 80 (238)
|++||+||||||||.|||+|||||+|+|||||||+|.+|+|.||||++|+|++++|+||||||+|||+||++++++|++|
T Consensus 1126 ~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feDLDEiI~r~vqpm~~~~~em~nh 1205 (1299)
T KOG1856|consen 1126 MDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFEDLDEIIARYVQPMATNLREMTNH 1205 (1299)
T ss_pred cccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEeeCceEeccccccCHHHHHH
Q psy1815 81 RYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFR 160 (238)
Q Consensus 81 rkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~p~Gf~fr~~~f~sl~~Li~ 160 (238)
+||+ .|+++++|++|+.||+.||++|+|+||+|+++||+|+|+|+++.+++||||+|.|+||+|++++|+||++||+
T Consensus 1206 kyf~---~Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p~g~~~rg~~f~tld~L~~ 1282 (1299)
T KOG1856|consen 1206 KYFF---TGTKKEVEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVPEGFRFRGQNFGTLDELCR 1282 (1299)
T ss_pred hHhh---cCCHHHHHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEEcccceEEecccchhHHHHHH
Confidence 9999 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCC
Q psy1815 161 WFKEHFRDPI 170 (238)
Q Consensus 161 ~FK~~~~~~~ 170 (238)
|||.|+.+|+
T Consensus 1283 ~FK~h~~~~~ 1292 (1299)
T KOG1856|consen 1283 WFKRHYKDPT 1292 (1299)
T ss_pred HHHHHhcCCC
Confidence 9999999987
No 3
>KOG0790|consensus
Probab=99.76 E-value=4.3e-18 Score=163.02 Aligned_cols=154 Identities=23% Similarity=0.411 Sum_probs=135.1
Q ss_pred CccEEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHHHHHH-----------
Q psy1815 3 QGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVSPMA----------- 71 (238)
Q Consensus 3 ~Ge~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV~pm~----------- 71 (238)
.|+|+.|||.+++..++++++..|.|. ||+|++.+...+ +++||+|..|-||+..|.+---
T Consensus 26 dgsfl~r~s~sNp~~fsl~~r~~~~v~-hikiq~~~~~~~-------l~~gekfat~~ELvqyyme~~~~lkekng~~ie 97 (600)
T KOG0790|consen 26 DGSFLARPSESNPGDFSLSVRRGDKVT-HIKIQNSGDFYD-------LYGGEKFATLAELVQYYMEHHGQLKEKNGDVIE 97 (600)
T ss_pred ccchhhccccCCCcceeEEEEeCCceE-EEEEeecCcccc-------ccCCccccchHHHHHHHHhhhHHHHhcCCCEEE
Confidence 699999999999999999999999999 999999998866 7899999999999999998762
Q ss_pred ----HHHHHHhcCccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCC---------CcceEEE
Q psy1815 72 ----ANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPAS---------RSRHEFI 138 (238)
Q Consensus 72 ----~~v~dl~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~---------~~~~e~I 138 (238)
.+|.|..+.|||+. +.+..++|++|. ||.+|.+ |.+..|..+||+|+||+...+ ++.|..|
T Consensus 98 lK~pl~cAdptserWfHG--~LsgkeAekLl~-ekgk~gs---fLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI 171 (600)
T KOG0790|consen 98 LKYPLNCADPTSERWFHG--HLSGKEAEKLLQ-EKGKHGS---FLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMI 171 (600)
T ss_pred ecCCCccCCchhhhhhcc--CCCchhHHHHHH-hcCCCcc---EEEeccccCCCceEEEEEcCCcccCCCCccceEEEEE
Confidence 38999999999998 589999999995 7787755 999999999999999999754 3455667
Q ss_pred EEeeCceEec-cccccCHHHHHHHHHhccCCCC
Q psy1815 139 SVTPEGFRFR-GQQFDSVNSLFRWFKEHFRDPI 170 (238)
Q Consensus 139 ~V~p~Gf~fr-~~~f~sl~~Li~~FK~~~~~~~ 170 (238)
+..+..|... +..|+|+.+|+++||++++...
T Consensus 172 ~~q~~kydVGgge~F~sltdLidhykknpmvEt 204 (600)
T KOG0790|consen 172 RCQEGKYDVGGGERFDSLTDLVEHYKKNPMVET 204 (600)
T ss_pred EecccccccCCccccchHHHHHHHhccCchhhh
Confidence 7777667666 7999999999999999987653
No 4
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=98.65 E-value=9.6e-08 Score=70.67 Aligned_cols=59 Identities=17% Similarity=0.401 Sum_probs=48.6
Q ss_pred CccEEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCCCcccccceEeECC-eeeCCHHHHHHHHHHH
Q psy1815 3 QGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGT-EEFEDLDEIIARHVSP 69 (238)
Q Consensus 3 ~Ge~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~-eefeDLDEIIaryV~p 69 (238)
.|+||||.|++..+.++||||+.+.+ .|+.|...+. +. +.+++ ..|.+|+|||+.|.+.
T Consensus 22 ~G~FLvR~s~~~~~~~~Lsv~~~~~~-~h~~I~~~~~-~~------~~l~~~~~F~sl~eLI~~y~~~ 81 (84)
T smart00252 22 DGDFLVRDSESEPGDYVLSVRVKGKV-KHYRIRRNED-GK------FYLDGGRKFPSLVELVEHYQKN 81 (84)
T ss_pred CcEEEEEcCCCCCCCEEEEEEECCEE-EEEEEEECCC-Cc------EEECCCCccCCHHHHHHHHhhC
Confidence 69999999999889999999998555 4999988764 22 34554 8999999999999764
No 5
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=98.61 E-value=1.6e-07 Score=70.18 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=51.0
Q ss_pred CCccEEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHHHHH
Q psy1815 2 DQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVSPM 70 (238)
Q Consensus 2 ~~Ge~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV~pm 70 (238)
..|+||||.|++..+.++|||++.+.+. |+.|...+.... +...+..|.+|+|||+.|.+.-
T Consensus 20 ~~G~FLiR~s~~~~~~~~Lsv~~~~~v~-H~~I~~~~~~~~------~~~~~~~f~sl~eLv~~y~~~~ 81 (94)
T cd00173 20 PDGTFLVRDSESSPGDYVLSVRVKGKVK-HYRIERTDDGYY------LLGEGRSFPSLPELIEHYQKNP 81 (94)
T ss_pred CCceEEEEecCCCCCCEEEEEEECCEEE-EEEEEECCCCeE------EecCCCccCCHHHHHHHHhhCc
Confidence 6899999999988899999999998555 999988775322 2225789999999999998754
No 6
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=98.61 E-value=1.4e-07 Score=68.92 Aligned_cols=58 Identities=16% Similarity=0.342 Sum_probs=48.9
Q ss_pred CCccEEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHH
Q psy1815 2 DQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARH 66 (238)
Q Consensus 2 ~~Ge~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIary 66 (238)
+.|.||||+|++..+.++|||+..+.+. |+.|...+.. ...+.++..|.+|.|||..|
T Consensus 20 ~~G~FLvR~s~~~~~~~~Lsv~~~~~v~-h~~I~~~~~~------~~~~~~~~~F~sl~~LV~~y 77 (77)
T PF00017_consen 20 PDGTFLVRPSSSKPGKYVLSVRFDGKVK-HFRINRTENG------GYFLSDGKKFPSLSDLVEHY 77 (77)
T ss_dssp STTEEEEEEESSSTTSEEEEEEETTEEE-EEEEEEETTS------EEESSTSSEBSSHHHHHHHH
T ss_pred CCCeEEEEeccccccccccccccccccE-EEEEEecCCc------eEEccCCCcCCCHHHHHHhC
Confidence 5899999999998899999999999655 9999998865 22344567899999999877
No 7
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=98.59 E-value=3.3e-07 Score=68.47 Aligned_cols=80 Identities=25% Similarity=0.453 Sum_probs=69.3
Q ss_pred ccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEeeCceEec--cccccCHHHH
Q psy1815 81 RYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFR--GQQFDSVNSL 158 (238)
Q Consensus 81 rkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~p~Gf~fr--~~~f~sl~~L 158 (238)
.||+. ..+++++|++|++ ..+ ..|.+..|...++.|+|++..+..+.|-.|....+||.+. ...|+|+.+|
T Consensus 1 ~w~~g--~i~r~~Ae~~L~~--~~~---G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eL 73 (94)
T cd00173 1 PWYHG--PISREEAEELLKK--KPD---GTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPEL 73 (94)
T ss_pred Ccccc--CCCHHHHHHHHhc--CCC---ceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHH
Confidence 47776 4899999999975 222 5699999999999999999988878888889999999999 8999999999
Q ss_pred HHHHHhccC
Q psy1815 159 FRWFKEHFR 167 (238)
Q Consensus 159 i~~FK~~~~ 167 (238)
|++|+.+..
T Consensus 74 v~~y~~~~~ 82 (94)
T cd00173 74 IEHYQKNPL 82 (94)
T ss_pred HHHHhhCcc
Confidence 999998875
No 8
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=98.55 E-value=6.7e-07 Score=66.13 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=66.6
Q ss_pred CccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEee-CceEecc-ccccCHHH
Q psy1815 80 FRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTP-EGFRFRG-QQFDSVNS 157 (238)
Q Consensus 80 HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~p-~Gf~fr~-~~f~sl~~ 157 (238)
+.||.. ..+++++|++|+.. | -.-|.+..|...+|.|+|+++-+..+.|-.|.-.. ++|.+.+ ..|+||.+
T Consensus 1 ~~w~~g--~i~r~~Ae~lL~~~----~-~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~e 73 (84)
T smart00252 1 QPWYHG--FISREEAEKLLKNE----G-DGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVE 73 (84)
T ss_pred CCeecc--cCCHHHHHHHHhcC----C-CcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHH
Confidence 468886 47999999999752 3 36799999998899999999988767777777666 6799996 99999999
Q ss_pred HHHHHHhcc
Q psy1815 158 LFRWFKEHF 166 (238)
Q Consensus 158 Li~~FK~~~ 166 (238)
||++|+++.
T Consensus 74 LI~~y~~~~ 82 (84)
T smart00252 74 LVEHYQKNS 82 (84)
T ss_pred HHHHHhhCC
Confidence 999999865
No 9
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=98.51 E-value=3.3e-07 Score=66.85 Aligned_cols=75 Identities=27% Similarity=0.437 Sum_probs=62.7
Q ss_pred cccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEeeCc-eEec-cccccCHHHHH
Q psy1815 82 YYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEG-FRFR-GQQFDSVNSLF 159 (238)
Q Consensus 82 kF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~p~G-f~fr-~~~f~sl~~Li 159 (238)
||.. ..+++++|++|++ .+.+ ..|.+..|...||.|+|++..+.++.|-.|....++ |.+. ++.|+||.+||
T Consensus 1 W~~g--~isr~~Ae~~L~~-~~~~---G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV 74 (77)
T PF00017_consen 1 WFHG--FISRQEAERLLMQ-GKPD---GTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLV 74 (77)
T ss_dssp TBEE--SSHHHHHHHHHHT-TSST---TEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHH
T ss_pred CcCC--CCCHHHHHHHHHh-cCCC---CeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHH
Confidence 5665 4789999999975 2333 569999999999999999999888888889999999 5555 68899999999
Q ss_pred HHH
Q psy1815 160 RWF 162 (238)
Q Consensus 160 ~~F 162 (238)
++|
T Consensus 75 ~~y 77 (77)
T PF00017_consen 75 EHY 77 (77)
T ss_dssp HHH
T ss_pred HhC
Confidence 986
No 10
>KOG1264|consensus
Probab=98.01 E-value=4.7e-05 Score=78.57 Aligned_cols=154 Identities=18% Similarity=0.289 Sum_probs=117.6
Q ss_pred CCccEEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHHHHHHHHHH------
Q psy1815 2 DQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVSPMAANVR------ 75 (238)
Q Consensus 2 ~~Ge~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV~pm~~~v~------ 75 (238)
+.|.|+||-|-.=.++.+|++= .+|--||..|+-.-... ++ +-++.++..|++|=+||..|-+-+.+-.+
T Consensus 561 ~dGtFlVReS~tFvgDytLSfw-r~grv~HcRIrsk~e~g--t~-Kyyl~dN~vfdslY~LI~~Y~~~~Lr~aeF~m~Lt 636 (1267)
T KOG1264|consen 561 KDGTFLVRESETFVGDYTLSFW-RSGRVQHCRIRSKMEGG--TL-KYYLTDNLVFDSLYALIQHYRETHLRCAEFEMRLT 636 (1267)
T ss_pred CCccEEEeeccccccceeeeee-ECCceeeEEEEeeecCC--ce-eEEEecchhHHHHHHHHHHHHhccccccceEEEec
Confidence 4799999999999999999974 45556799997643221 11 33567889999999999999999875221
Q ss_pred HH-------hcCccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEeeCceEec
Q psy1815 76 EL-------LSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFR 148 (238)
Q Consensus 76 dl-------~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~p~Gf~fr 148 (238)
+. .+-+||.. ..+++++|+.|..- |--..+.+. +.+-+-.|.|+|..+.+..|.-|.-...=|-+.
T Consensus 637 ePvPqp~~He~k~W~~a--s~treqAE~mL~rv----p~DGaFLiR-~~~~~nsy~iSfr~~gkikHcRi~rdGr~fvl~ 709 (1267)
T KOG1264|consen 637 EPVPQPNPHESKPWYHA--SLTREQAEDMLMRV----PRDGAFLIR-KREGSNSYAISFRARGKIKHCRINRDGRHFVLG 709 (1267)
T ss_pred CCCCCCCcccCCccccc--cccHHHHHHHHhhC----ccCcceEEE-eccCCceEEEEEEEcCcEeEEEEccCceEEEec
Confidence 11 23479987 48999999999632 433567777 888899999999998877676555555556777
Q ss_pred cccccCHHHHHHHHHhcc
Q psy1815 149 GQQFDSVNSLFRWFKEHF 166 (238)
Q Consensus 149 ~~~f~sl~~Li~~FK~~~ 166 (238)
...|.||.+||+|+-+|.
T Consensus 710 t~~FesLv~lv~yY~k~~ 727 (1267)
T KOG1264|consen 710 TSAFESLVELVSYYEKHP 727 (1267)
T ss_pred cHHHHHHHHHHHHHhcCh
Confidence 899999999999998775
No 11
>KOG4792|consensus
Probab=97.34 E-value=0.00052 Score=62.28 Aligned_cols=89 Identities=27% Similarity=0.415 Sum_probs=67.4
Q ss_pred CccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEE--------eeCceEecccc
Q psy1815 80 FRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISV--------TPEGFRFRGQQ 151 (238)
Q Consensus 80 HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V--------~p~Gf~fr~~~ 151 (238)
.-||.. ..|+.|+.++|..++ ...+...-|...||.++|++.-+.++.|--|.- .|-+|+...|.
T Consensus 11 ~swYfg--~mSRqeA~~lL~~~r-----~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIgdQ~ 83 (293)
T KOG4792|consen 11 SSWYFG--PMSRQEAVALLQGQR-----HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIGDQE 83 (293)
T ss_pred cceecC--cccHHHHHHHhcCcc-----eeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeecccc
Confidence 346665 579999999996443 567888878888999999998776654422221 13488899999
Q ss_pred ccCHHHHHHHHHhccCCCCCCCCC
Q psy1815 152 FDSVNSLFRWFKEHFRDPIPGAGV 175 (238)
Q Consensus 152 f~sl~~Li~~FK~~~~~~~p~~~~ 175 (238)
|++|-+|+++||.||.+..+-..+
T Consensus 84 Fd~lPaLL~fykihyLdtttLi~p 107 (293)
T KOG4792|consen 84 FDSLPALLEFYKIHYLDTTTLIEP 107 (293)
T ss_pred ccchHHHHhheeEeeecccccccc
Confidence 999999999999999987654443
No 12
>KOG1264|consensus
Probab=96.96 E-value=0.0027 Score=66.10 Aligned_cols=88 Identities=20% Similarity=0.366 Sum_probs=69.5
Q ss_pred cCccccccCCCCHHHHHHHHHHHHhc-CCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEeeC----ceEec-cccc
Q psy1815 79 SFRYYREECGGMRDKAEEVLRQEKRN-NPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPE----GFRFR-GQQF 152 (238)
Q Consensus 79 ~HrkF~~~~~gs~~eve~~L~~ek~~-nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~p~----Gf~fr-~~~f 152 (238)
..+||++.. +-+.++|++|+++.++ ...-.-+.+..|...+|+|.|+|..+.+++|.-|+.+-+ .|+|- +.+|
T Consensus 533 ~E~WFHgkl-e~R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~gt~Kyyl~dN~vf 611 (1267)
T KOG1264|consen 533 GEKWFHGKL-EGRTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKYYLTDNLVF 611 (1267)
T ss_pred chhhhhccc-ccchHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCCceeEEEecchhH
Confidence 468888653 3388999999999444 334468999999999999999999999998877766443 35555 8999
Q ss_pred cCHHHHHHHHHhccC
Q psy1815 153 DSVNSLFRWFKEHFR 167 (238)
Q Consensus 153 ~sl~~Li~~FK~~~~ 167 (238)
+||-+||.|+.+++.
T Consensus 612 dslY~LI~~Y~~~~L 626 (1267)
T KOG1264|consen 612 DSLYALIQHYRETHL 626 (1267)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999887763
No 13
>KOG4226|consensus
Probab=96.88 E-value=0.0024 Score=59.49 Aligned_cols=57 Identities=21% Similarity=0.437 Sum_probs=48.7
Q ss_pred CccEEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHHH
Q psy1815 3 QGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVS 68 (238)
Q Consensus 3 ~Ge~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV~ 68 (238)
.|||+||=|-+.++.++|+.|-...- .|+.|+-.+ ..+.||..+|.|+||||..|-+
T Consensus 303 eGdFLiRDSEsnpgD~SvSlka~grN-KHFkVq~~d--------~~ycIGqRkF~tmd~Lv~HY~k 359 (379)
T KOG4226|consen 303 EGDFLIRDSESNPGDFSVSLKASGRN-KHFKVQLVD--------NVYCIGQRKFHTMDELVEHYKK 359 (379)
T ss_pred cCceEEecCCCCCcceeEEeeccCCC-cceEEEEec--------ceEEeccceeccHHHHHHhhhc
Confidence 59999999999999999999976554 499998765 2378999999999999988754
No 14
>KOG4226|consensus
Probab=96.51 E-value=0.011 Score=55.22 Aligned_cols=85 Identities=19% Similarity=0.317 Sum_probs=69.6
Q ss_pred hcCccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEeeCceEeccccccCHHH
Q psy1815 78 LSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNS 157 (238)
Q Consensus 78 ~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~p~Gf~fr~~~f~sl~~ 157 (238)
-...||.. ..++..+|-.|. +.....+ |.+.-|+..||+|.++-+...+-.|-.|.+..+-|....+.|-+|++
T Consensus 279 ag~~WYyG--~itR~qae~~Ln-~hG~eGd---FLiRDSEsnpgD~SvSlka~grNKHFkVq~~d~~ycIGqRkF~tmd~ 352 (379)
T KOG4226|consen 279 AGRPWYYG--NITRHQAECALN-EHGHEGD---FLIRDSESNPGDFSVSLKASGRNKHFKVQLVDNVYCIGQRKFHTMDE 352 (379)
T ss_pred cCCcceec--cccHHHHHHHHh-ccCccCc---eEEecCCCCCcceeEEeeccCCCcceEEEEecceEEeccceeccHHH
Confidence 34567766 478999999985 4444444 88888999999999999988777777788888889999999999999
Q ss_pred HHHHHHhccCC
Q psy1815 158 LFRWFKEHFRD 168 (238)
Q Consensus 158 Li~~FK~~~~~ 168 (238)
|++++|+.+.=
T Consensus 353 Lv~HY~kaPIf 363 (379)
T KOG4226|consen 353 LVEHYKKAPIF 363 (379)
T ss_pred HHHhhhcCCce
Confidence 99999987653
No 15
>KOG0790|consensus
Probab=96.16 E-value=0.012 Score=58.04 Aligned_cols=83 Identities=22% Similarity=0.399 Sum_probs=67.8
Q ss_pred hcCccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEeeCceEec-cccccCHH
Q psy1815 78 LSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFR-GQQFDSVN 156 (238)
Q Consensus 78 ~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~p~Gf~fr-~~~f~sl~ 156 (238)
++-+||+. ..+..++|++|++ ...+.+ +....|++.||.|.|+...+..+.|.-|.-.++-|.+- +..|.++.
T Consensus 2 ~s~~wfh~--~~~g~~ae~Ll~~-~g~dgs---fl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~~~~~l~~gekfat~~ 75 (600)
T KOG0790|consen 2 TSRRWFHP--DLSGVEAETLLKE-RGVDGS---FLARPSESNPGDFSLSVRRGDKVTHIKIQNSGDFYDLYGGEKFATLA 75 (600)
T ss_pred cchhhcCC--CccchhHHHHHHH-hccccc---hhhccccCCCcceeEEEEeCCceEEEEEeecCccccccCCccccchH
Confidence 45678886 4788999999974 444544 67778999999999999998888888777777777655 89999999
Q ss_pred HHHHHHHhcc
Q psy1815 157 SLFRWFKEHF 166 (238)
Q Consensus 157 ~Li~~FK~~~ 166 (238)
+|+.|+-++.
T Consensus 76 ELvqyyme~~ 85 (600)
T KOG0790|consen 76 ELVQYYMEHH 85 (600)
T ss_pred HHHHHHHhhh
Confidence 9999998877
No 16
>KOG0194|consensus
Probab=94.08 E-value=0.26 Score=48.78 Aligned_cols=84 Identities=23% Similarity=0.344 Sum_probs=64.1
Q ss_pred hcCccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCc---eE-EEEEecC--CCcceEEEEEeeCceEec-cc
Q psy1815 78 LSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPG---KF-LLSYLPA--SRSRHEFISVTPEGFRFR-GQ 150 (238)
Q Consensus 78 ~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG---~F-~L~y~~~--~~~~~e~I~V~p~Gf~fr-~~ 150 (238)
....||++ -..+++++++|+. +. -|.+..+...+| .+ +||+..+ .+.+|--|.-..+.|.+- ..
T Consensus 47 ~~~~~yHG--~l~red~~~lL~~----~G---DfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~~~~~~~~ 117 (474)
T KOG0194|consen 47 RELPYYHG--LLPREDAEKLLKN----DG---DFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNLFFFEGLR 117 (474)
T ss_pred hcCccccc--cccHhHHHHHhCC----CC---ceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCeeEEeccc
Confidence 33789998 4899999999974 33 399999987766 44 8888864 556665566666666666 59
Q ss_pred cccCHHHHHHHHHhccCCCC
Q psy1815 151 QFDSVNSLFRWFKEHFRDPI 170 (238)
Q Consensus 151 ~f~sl~~Li~~FK~~~~~~~ 170 (238)
.|+++.+|++|++.+.....
T Consensus 118 ~F~si~~li~~~~~~~~~~~ 137 (474)
T KOG0194|consen 118 KFPTISELVNYYKFSKLEIT 137 (474)
T ss_pred cCCcHHHHHHHHHhccccee
Confidence 99999999999999877543
No 17
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=94.08 E-value=0.39 Score=43.11 Aligned_cols=82 Identities=13% Similarity=0.279 Sum_probs=57.8
Q ss_pred HHHHHHhcCccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEee----Cc---
Q psy1815 72 ANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTP----EG--- 144 (238)
Q Consensus 72 ~~v~dl~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~p----~G--- 144 (238)
..+..+++|+.|++ -+..+++++|.++ ...=+.+++|.+-+.+..+.++-...+- ..|-|.. .+
T Consensus 30 ~~~~R~I~HP~F~n---~~~~qAe~~L~~~-----~~Ge~iIRPSSkG~dhL~vTwKv~d~vy-qHidV~E~~K~n~~sl 100 (220)
T PF14633_consen 30 KFVKRVIKHPLFKN---FNYKQAEEYLADQ-----DVGEVIIRPSSKGPDHLTVTWKVADGVY-QHIDVKEEDKENEFSL 100 (220)
T ss_dssp ---HHHHCSTTEES---S-HHHHHHHHCCS------TT-EEEEE-TTTTTEEEEEEEEETTEE-EEEEEEEECSSSTTS-
T ss_pred ccccccccCCCccC---CCHHHHHHHHhcC-----CCCCEEEeeCCCCCCeEEEEEEEcCCcE-EEEEEEECCCcCcccc
Confidence 46889999999995 6999999999643 2456999999999999999998765542 2233332 22
Q ss_pred ---eEeccccccCHHHHHHHH
Q psy1815 145 ---FRFRGQQFDSVNSLFRWF 162 (238)
Q Consensus 145 ---f~fr~~~f~sl~~Li~~F 162 (238)
+...+..|.|||+||.=|
T Consensus 101 G~~L~i~~~~yeDLDEii~r~ 121 (220)
T PF14633_consen 101 GKTLKIGGEEYEDLDEIIARH 121 (220)
T ss_dssp SSEEEETTEEESSHHHHHHHC
T ss_pred CcEEEECCeEECCHHHHHHHH
Confidence 566789999999998743
No 18
>KOG4637|consensus
Probab=93.98 E-value=0.15 Score=49.35 Aligned_cols=85 Identities=19% Similarity=0.320 Sum_probs=64.8
Q ss_pred HHHhcCccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEeeCceEec-ccccc
Q psy1815 75 RELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFR-GQQFD 153 (238)
Q Consensus 75 ~dl~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~p~Gf~fr-~~~f~ 153 (238)
++++.-.||-. ..|++||.+.|+.. |+ ..|.+.-....+|.+.|+..-..+....-|-+..+.|-|. .-+|+
T Consensus 18 ~~L~~a~WYWg--disReev~~~L~d~----PD-GsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~d~ltf~ 90 (464)
T KOG4637|consen 18 DELQDAEWYWG--DISREEVNKKLRDQ----PD-GSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFSDPLTFN 90 (464)
T ss_pred hhhhhcccccc--ccCHHHHHHHhcCC----CC-CcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCCCchhhH
Confidence 35777788875 47999999999744 65 3455554455799999999977666666666666666666 78999
Q ss_pred CHHHHHHHHHhcc
Q psy1815 154 SVNSLFRWFKEHF 166 (238)
Q Consensus 154 sl~~Li~~FK~~~ 166 (238)
|+.+|||+++..-
T Consensus 91 SVVelIn~yr~~S 103 (464)
T KOG4637|consen 91 SVVELINHYRNES 103 (464)
T ss_pred HHHHHHHHHhhhH
Confidence 9999999999753
No 19
>KOG4792|consensus
Probab=92.98 E-value=0.28 Score=44.90 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=47.8
Q ss_pred CccEEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCCCc-ccccceEeECCeeeCCHHHHHHHH
Q psy1815 3 QGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENS-FSLGRSLWIGTEEFEDLDEIIARH 66 (238)
Q Consensus 3 ~Ge~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~n~-~sLG~~L~Ig~eefeDLDEIIary 66 (238)
+|-|++|=||+-++..+|++.=.+.|. |.-|. .+-++. ...-..|+|++++|+||--|+.-|
T Consensus 32 ~G~FLvRDSst~pGdYvLsV~E~srVs-hYiIn-~~~p~~~~~~~~~~rIgdQ~Fd~lPaLL~fy 94 (293)
T KOG4792|consen 32 HGVFLVRDSSTSPGDYVLSVSENSRVS-HYIIN-SSPPSPAQPPPSRLRIGDQEFDSLPALLEFY 94 (293)
T ss_pred eeeEEEecCCCCCCceEEEEecCccee-eeeec-CCCCCccCCCcceeeeccccccchHHHHhhe
Confidence 688999999999999999999999877 77654 322222 222337899999999999888655
No 20
>KOG3601|consensus
Probab=92.77 E-value=0.02 Score=51.31 Aligned_cols=116 Identities=20% Similarity=0.267 Sum_probs=84.7
Q ss_pred CCCcccccceEeECCeeeCCHHHHHHHHHHHH-------HHHHHHHhcCccccccCCCCHHHHHHHHHHHHhcCCCcceE
Q psy1815 39 KENSFSLGRSLWIGTEEFEDLDEIIARHVSPM-------AANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHY 111 (238)
Q Consensus 39 K~n~~sLG~~L~Ig~eefeDLDEIIaryV~pm-------~~~v~dl~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y 111 (238)
.+-.|-.|..|+|.+ .+|.|--|+--+ -+|.-+|..|+||.. .-+++..|+.|.. ++. ..+
T Consensus 15 dELsFlkg~~lk~l~-----~~d~~nw~~ael~g~~g~~P~Nai~~~~~~wve~--~i~r~~ae~~l~~--~~~---G~f 82 (222)
T KOG3601|consen 15 DELSFLKGDNLKILN-----MEDDINWYKAELDGPEGFIPKNAIRMKPHEWVEG--LIPRPLAEDLLSK--KRD---GDF 82 (222)
T ss_pred ccceeecCCceEecc-----hHHhhhhhhHhhcCccccCcccccccccccceec--ccccchhhhhhhc--cCc---chh
Confidence 334466677777653 344444444443 357778899999986 4788999988864 333 346
Q ss_pred EEEeCCCCCceEEEEEecCCCcce-EEEEEeeCceEeccccccCHHHHHHHHHhcc
Q psy1815 112 FVSLSKNYPGKFLLSYLPASRSRH-EFISVTPEGFRFRGQQFDSVNSLFRWFKEHF 166 (238)
Q Consensus 112 ~f~~s~~~PG~F~L~y~~~~~~~~-e~I~V~p~Gf~fr~~~f~sl~~Li~~FK~~~ 166 (238)
+..+++..||+|.++..-...++| -+|+--..+|.++...|++++.|+.|...+-
T Consensus 83 l~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s 138 (222)
T KOG3601|consen 83 LIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTAS 138 (222)
T ss_pred hhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCcccc
Confidence 777899999999999987777766 4677788999999999999998888765443
No 21
>KOG2996|consensus
Probab=89.69 E-value=0.63 Score=47.62 Aligned_cols=59 Identities=22% Similarity=0.387 Sum_probs=49.0
Q ss_pred CCccEEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHHH
Q psy1815 2 DQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVS 68 (238)
Q Consensus 2 ~~Ge~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV~ 68 (238)
..|-++||-+.|.....++++|..+.|= ||.|.+.+ |...+-.++.|.+|=||+++|-.
T Consensus 705 ~ngT~LVR~r~kea~e~AISikynnevK-HikI~~~d-------g~~~i~E~k~F~sl~ELVeyYq~ 763 (865)
T KOG2996|consen 705 PNGTYLVRYRTKEAKEFAISIKYNNEVK-HIKIETND-------GKVHITEDKKFNSLVELVEYYQS 763 (865)
T ss_pred CCceEEEEecccchhheeEEEEeccccc-eEEEEecC-------CeEEechhhhhhhHHHHHHHHHh
Confidence 3689999999999999999999999998 99998874 22233345799999999998854
No 22
>KOG2996|consensus
Probab=88.78 E-value=1.2 Score=45.70 Aligned_cols=124 Identities=23% Similarity=0.252 Sum_probs=82.5
Q ss_pred EEEEEEeCCCC---CcccccceEeECCeeeCCHHHHHHHHHHHHHHH-------HHHHhcCccccccCCCCHHHHHHHHH
Q psy1815 30 QHIDVREEGKE---NSFSLGRSLWIGTEEFEDLDEIIARHVSPMAAN-------VRELLSFRYYREECGGMRDKAEEVLR 99 (238)
Q Consensus 30 qHidI~E~~K~---n~~sLG~~L~Ig~eefeDLDEIIaryV~pm~~~-------v~dl~~HrkF~~~~~gs~~eve~~L~ 99 (238)
|-=||.|.-|. +.+..|+.+--+..-|-. ..-|+||..- =.|+..|.||.+ ...+..+|..|+
T Consensus 630 ~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fp-----ss~vkp~~~vpr~~~~~~~d~s~~~WyaG--~MERaqaes~Lk 702 (865)
T KOG2996|consen 630 QEGDVLELLKGDAESSWWEGRNHGSRESGNFP-----SSTVKPCPSVPRQQDYVPTDYSEFPWYAG--EMERAQAESTLK 702 (865)
T ss_pred cCCceeehhcCCCCCcccccCCccCCccCCCC-----ccccCcCCCCCCCCCCCccchhhhhhhcc--hHhhhhhhhHhh
Confidence 33456666443 335666554333222221 1234555432 237888999986 356777787774
Q ss_pred HHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEeeCceEec--cccccCHHHHHHHHHhcc
Q psy1815 100 QEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFR--GQQFDSVNSLFRWFKEHF 166 (238)
Q Consensus 100 ~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~p~Gf~fr--~~~f~sl~~Li~~FK~~~ 166 (238)
|-...-|.+..+.+..+.|.+|-.=|+.+.|.-|.-. ||+..- .+.|+++.+|+.|++.|-
T Consensus 703 -----~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~-dg~~~i~E~k~F~sl~ELVeyYq~~s 765 (865)
T KOG2996|consen 703 -----NRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETN-DGKVHITEDKKFNSLVELVEYYQSHS 765 (865)
T ss_pred -----cCCCceEEEEecccchhheeEEEEeccccceEEEEec-CCeEEechhhhhhhHHHHHHHHHhcc
Confidence 2223679999998999999999988888888766555 666554 789999999999998653
No 23
>KOG0194|consensus
Probab=88.59 E-value=1.6 Score=43.42 Aligned_cols=61 Identities=16% Similarity=0.323 Sum_probs=45.4
Q ss_pred CCccEEEecCCCCCCc---E-EEEEEe--eCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHHHHH
Q psy1815 2 DQGEVIVRPSSKGADH---L-TVTWKV--ADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVSPM 70 (238)
Q Consensus 2 ~~Ge~IIRPSSkG~dh---L-tvTwKv--~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV~pm 70 (238)
..|||+||=|--...+ + .|++++ .++++ |+-|+..+. ..+.++.+.|.+++|||..|...-
T Consensus 67 ~~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~-h~vi~~~~~-------~~~~~~~~~F~si~~li~~~~~~~ 133 (474)
T KOG0194|consen 67 NDGDFLVRASEPKEGEKREFVVLSVKWSVFKKIK-HYVIKRNGN-------LFFFEGLRKFPTISELVNYYKFSK 133 (474)
T ss_pred CCCceEEEeecccCCcceeEEEEEEEeecCCcee-EEEEEEcCC-------eeEEeccccCCcHHHHHHHHHhcc
Confidence 5799999988765431 1 555555 47788 999988775 234566689999999999998765
No 24
>KOG0197|consensus
Probab=86.60 E-value=1.3 Score=43.87 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=64.1
Q ss_pred HHHhcCccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCC------CcceEEEEEeeCc-eE-
Q psy1815 75 RELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPAS------RSRHEFISVTPEG-FR- 146 (238)
Q Consensus 75 ~dl~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~------~~~~e~I~V~p~G-f~- 146 (238)
..+-...||.. ..+++++|+.|... .| ....+....|...+|.|.|+..-.. .+.|.-|+-..+| |+
T Consensus 76 ~~l~~~~Wf~~--~isR~~ae~~ll~p--~~-~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~ 150 (468)
T KOG0197|consen 76 IKLSDEPWFFG--KISREEAERQLLAP--EN-KEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYP 150 (468)
T ss_pred cccccCCchhc--cccHHHHHHhhcCC--CC-CccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCCCeec
Confidence 34556789987 48999999755422 22 1245666778899999999998543 4566778777766 44
Q ss_pred -ec-cccccCHHHHHHHHHhccCC
Q psy1815 147 -FR-GQQFDSVNSLFRWFKEHFRD 168 (238)
Q Consensus 147 -fr-~~~f~sl~~Li~~FK~~~~~ 168 (238)
.. ...|+++.+|++|.+.+--.
T Consensus 151 ~~~~~~~F~~l~~lv~~~~~~~~g 174 (468)
T KOG0197|consen 151 YIDERELFSSLQQLVNYYSKNADG 174 (468)
T ss_pred CCCHHHhhhhHHHHHhhhhccCcc
Confidence 22 78999999999999877543
No 25
>KOG1930|consensus
Probab=86.44 E-value=0.98 Score=44.41 Aligned_cols=152 Identities=20% Similarity=0.278 Sum_probs=101.3
Q ss_pred CCccEEEecCCCCCCcEEEEEEeeC--------------CeeEEEEEEeCCCCCcccccceEe-ECCe-eeCCHHHHHHH
Q psy1815 2 DQGEVIVRPSSKGADHLTVTWKVAD--------------DLYQHIDVREEGKENSFSLGRSLW-IGTE-EFEDLDEIIAR 65 (238)
Q Consensus 2 ~~Ge~IIRPSSkG~dhLtvTwKv~d--------------~vyqHidI~E~~K~n~~sLG~~L~-Ig~e-efeDLDEIIar 65 (238)
+.|.||||=|..=.+..-|-+||.. ++..|+-|.-..|. -+|+ .++| -|-+|.-|+.+
T Consensus 232 ePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkG------VkLKGC~nEP~FGSLSALV~Q 305 (483)
T KOG1930|consen 232 EPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKG------VKLKGCDNEPVFGSLSALVYQ 305 (483)
T ss_pred CCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCc------eeccCCCCCCccchhHHHHhh
Confidence 5799999999998899999999963 45668888666554 2333 2345 89999999999
Q ss_pred H-HHHHHHHHHHHhcCccccccC--CCCHHHHHHHHHHHHhcCCCcceEEEEeCC---------CCCceEEEEEecCCCc
Q psy1815 66 H-VSPMAANVRELLSFRYYREEC--GGMRDKAEEVLRQEKRNNPNKIHYFVSLSK---------NYPGKFLLSYLPASRS 133 (238)
Q Consensus 66 y-V~pm~~~v~dl~~HrkF~~~~--~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~---------~~PG~F~L~y~~~~~~ 133 (238)
| |.|++.-|+-++=.|-=-+.. ........++|++ .|--+ .-|.-+++- ++.-.+.+.-.|.-.+
T Consensus 306 HSIt~LALPckL~iP~rDp~ee~~~~~~~~a~a~LLkq--GAACn-Vlyl~SVd~ESLTG~~av~kAt~~~~~~~p~p~~ 382 (483)
T KOG1930|consen 306 HSITALALPCKLVIPDRDPLEEAPVPEHTSATAALLKQ--GAACN-VLYLGSVDVESLTGNEAVQKATSSQRAINPTPRA 382 (483)
T ss_pred ccchhhhcceeEeccCCCcccCCCCCCCchhHHHHHhh--Cccce-EEEEeeeeccccccHHHHHHHHHHHhhcCCCCCc
Confidence 8 889988777666554442110 1133444556642 23222 567777653 2344566666665566
Q ss_pred ceEEEEEeeCceEeccccccCHHHHHHHHHhccCC
Q psy1815 134 RHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRD 168 (238)
Q Consensus 134 ~~e~I~V~p~Gf~fr~~~f~sl~~Li~~FK~~~~~ 168 (238)
....++|..+|..+-..+-. -+|.+||.-
T Consensus 383 tvVHFKVSsQGITLTDNqRK------~FFRRHypv 411 (483)
T KOG1930|consen 383 TVVHFKVSSQGITLTDNQRK------VFFRRHYPV 411 (483)
T ss_pred eEEEEEEeccceeeeccchh------hheeccccc
Confidence 77889999999999854322 468888853
No 26
>KOG4278|consensus
Probab=86.24 E-value=1.4 Score=46.12 Aligned_cols=58 Identities=19% Similarity=0.437 Sum_probs=47.8
Q ss_pred CccEEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHH
Q psy1815 3 QGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHV 67 (238)
Q Consensus 3 ~Ge~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV 67 (238)
.|+|++|-|-..+..++|+++-.-.|| |..|--.+ -|+.+.-....|.+|-||+-.|-
T Consensus 173 nGSFLVRESEsSpgQ~sISlRyeGRVy-HYRINt~~------dgK~yvt~EsrF~TLaELVHHHS 230 (1157)
T KOG4278|consen 173 NGSFLVRESESSPGQYSISLRYEGRVY-HYRINTDN------DGKMYVTQESRFRTLAELVHHHS 230 (1157)
T ss_pred ccceEEeeccCCCcceeEEEEecceEE-EEEeeccC------CccEEEeehhhhhHHHHHHhhcc
Confidence 599999999999999999999999999 99995443 35555555569999999987763
No 27
>KOG4637|consensus
Probab=75.84 E-value=6.8 Score=38.33 Aligned_cols=70 Identities=27% Similarity=0.457 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEeeCceEec--cccccCHHHHHHHHHhc
Q psy1815 90 MRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFR--GQQFDSVNSLFRWFKEH 165 (238)
Q Consensus 90 s~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~p~Gf~fr--~~~f~sl~~Li~~FK~~ 165 (238)
.++.+|++|+ . .|+ .-|.+.. .++-|++.||++....+.|.-|.-+..||-|. -..|.++.+|+.++...
T Consensus 340 ~r~kAe~llr-g---~~d-GtFLIR~-ss~~g~yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~ 411 (464)
T KOG4637|consen 340 NRDKAEELLR-G---KPD-GTFLIRE-SSKGGCYALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHT 411 (464)
T ss_pred hHHHHHHHhc-C---CCC-CeEEEee-ccCCCceEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhh
Confidence 4455565554 1 233 4466655 45789999999999999999999999999999 67899999999998754
No 28
>KOG1856|consensus
Probab=74.19 E-value=14 Score=40.65 Aligned_cols=81 Identities=12% Similarity=0.296 Sum_probs=58.5
Q ss_pred HHHHHHHhcCccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcc-e--------E-EEEE
Q psy1815 71 AANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSR-H--------E-FISV 140 (238)
Q Consensus 71 ~~~v~dl~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~-~--------e-~I~V 140 (238)
...+..+++|+.|++ -+.++++++|.+. ++.=-++..|.+.-...++.++.....- | | ++.+
T Consensus 1099 ~~r~~RvI~HP~F~n---~n~eQAe~yL~~~-----d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fsl 1170 (1299)
T KOG1856|consen 1099 KQRVSRVIAHPLFKN---LNAEQAEAYLSDM-----DQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSL 1170 (1299)
T ss_pred HhhhhhhhcCccccC---CCHHHHHHHHHhc-----ccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccc
Confidence 467899999999995 6899999999743 2234666667766677888888765431 1 2 3443
Q ss_pred eeCceEeccccccCHHHHHH
Q psy1815 141 TPEGFRFRGQQFDSVNSLFR 160 (238)
Q Consensus 141 ~p~Gf~fr~~~f~sl~~Li~ 160 (238)
..-+...++.|.+||++|.
T Consensus 1171 -g~~l~i~~e~feDLDEiI~ 1189 (1299)
T KOG1856|consen 1171 -GKTLWIGGEEFEDLDEIIA 1189 (1299)
T ss_pred -cceEEECCcccccHHHHHH
Confidence 3455556999999999987
No 29
>KOG0197|consensus
Probab=73.49 E-value=6.6 Score=39.11 Aligned_cols=64 Identities=19% Similarity=0.317 Sum_probs=46.6
Q ss_pred CCccEEEecCCCCCCcEEEEEEeeC-----CeeEEEEEEeCCCCCcccccceEeECC-eeeCCHHHHHHHHHHHH
Q psy1815 2 DQGEVIVRPSSKGADHLTVTWKVAD-----DLYQHIDVREEGKENSFSLGRSLWIGT-EEFEDLDEIIARHVSPM 70 (238)
Q Consensus 2 ~~Ge~IIRPSSkG~dhLtvTwKv~d-----~vyqHidI~E~~K~n~~sLG~~L~Ig~-eefeDLDEIIaryV~pm 70 (238)
..|.|+||.|.+-.+.+++++.-.+ ....|.+|...+.. |....|.. +-|..|.|+|..|-..=
T Consensus 103 ~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~-----~~~~~~~~~~~F~~l~~lv~~~~~~~ 172 (468)
T KOG0197|consen 103 KEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGG-----GLYPYIDERELFSSLQQLVNYYSKNA 172 (468)
T ss_pred CccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCC-----CeecCCCHHHhhhhHHHHHhhhhccC
Confidence 3589999999777888898887776 13459999887643 11223544 58999999999886543
No 30
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=70.07 E-value=4.9 Score=36.08 Aligned_cols=27 Identities=37% Similarity=0.375 Sum_probs=20.5
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCCCCCcC
Q psy1815 181 GQTPYGGARQTPGGGHLPYHTPGMTPHH 208 (238)
Q Consensus 181 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 208 (238)
.|+|. +.++||++++.+++||++||.|
T Consensus 9 ~r~~~-~~g~TP~~~~~~g~tp~~TP~R 35 (231)
T PF11831_consen 9 FRTPS-GVGATPRRNGGPGQTPLRTPLR 35 (231)
T ss_pred ccCCC-CCCcCCCCCCCCCCCCCCCCCC
Confidence 44544 5689998888888999999943
No 31
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=65.48 E-value=5.9 Score=33.29 Aligned_cols=24 Identities=25% Similarity=0.722 Sum_probs=21.3
Q ss_pred EEEEeeCceEeccccccCHHHHHH
Q psy1815 137 FISVTPEGFRFRGQQFDSVNSLFR 160 (238)
Q Consensus 137 ~I~V~p~Gf~fr~~~f~sl~~Li~ 160 (238)
-|.|..|||.|.++.|.||..+-.
T Consensus 97 ~V~V~~dGfey~Gr~y~SLSaIAr 120 (136)
T PF11149_consen 97 EVTVLEDGFEYQGRRYKSLSAIAR 120 (136)
T ss_pred EEEEeCCCEEECCccccCHHHHHH
Confidence 399999999999999999988643
No 32
>KOG4278|consensus
Probab=64.68 E-value=13 Score=39.34 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHhcCccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEe
Q psy1815 62 IIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVT 141 (238)
Q Consensus 62 IIaryV~pm~~~v~dl~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~ 141 (238)
+=.+||.|. +.|-.|-||+. .-++.++|.+|.. .-| ..|.+..|+..||.+.++..=..++-|--|-+.
T Consensus 138 VPSNyItPv----NSLeKhsWYHG--pvSRsaaEy~LsS--gIn---GSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~ 206 (1157)
T KOG4278|consen 138 VPSNYITPV----NSLEKHSWYHG--PVSRSAAEYILSS--GIN---GSFLVRESESSPGQYSISLRYEGRVYHYRINTD 206 (1157)
T ss_pred ccccccccc----cchhhcccccC--ccccchhhhhhhc--Ccc---cceEEeeccCCCcceeEEEEecceEEEEEeecc
Confidence 345777776 46778999997 4789999999953 334 358889999999999999876666666667777
Q ss_pred eCceEec--cccccCHHHHHHHHHhcc
Q psy1815 142 PEGFRFR--GQQFDSVNSLFRWFKEHF 166 (238)
Q Consensus 142 p~Gf~fr--~~~f~sl~~Li~~FK~~~ 166 (238)
.+|=.|- ...|.+|.+|+.+--...
T Consensus 207 ~dgK~yvt~EsrF~TLaELVHHHStvA 233 (1157)
T KOG4278|consen 207 NDGKMYVTQESRFRTLAELVHHHSTVA 233 (1157)
T ss_pred CCccEEEeehhhhhHHHHHHhhccccc
Confidence 7776555 677999999998765443
No 33
>KOG1785|consensus
Probab=56.21 E-value=45 Score=33.20 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHH---HH-hcCccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecC
Q psy1815 62 IIARHVSPMAANVR---EL-LSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPA 130 (238)
Q Consensus 62 IIaryV~pm~~~v~---dl-~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~ 130 (238)
|..|-.+|-...++ -+ ++|.-|... .+-+||.+.|+.+..+-. .|.|..|=..+|.+.+.|+..
T Consensus 234 vFTRLFqPw~tllkNWq~LavtHPGYmAF--LTYDEVk~RLqk~~~KpG---SYIFRlSCTRlGQWAIGYVt~ 301 (563)
T KOG1785|consen 234 VFTRLFQPWKTLLKNWQTLAVTHPGYMAF--LTYDEVKARLQKYIKKPG---SYIFRLSCTRLGQWAIGYVTA 301 (563)
T ss_pred hHHHhhccHHHHHHhhhhhhccCCceeEE--eeHHHHHHHHHHHhcCCC---ceEEeeccCcccceeEEEEcC
Confidence 45555666554444 33 569998764 789999999998877654 499999999999999999865
No 34
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=56.18 E-value=22 Score=27.64 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=46.7
Q ss_pred cCccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCCCcceEEEEEeeCceEeccccccCHHHH
Q psy1815 79 SFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSL 158 (238)
Q Consensus 79 ~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~~~~~e~I~V~p~Gf~fr~~~f~sl~~L 158 (238)
+|+-|... .+-+||++.|+.+..+- ..|.|..|=..-|.+-+.|+..... -+..+|. +=+=...|
T Consensus 1 tHpgY~AF--lTYdevk~~L~~~~~kp---GsYiFRlSCTrLGQWAIGyV~~dg~---I~QTIPq-------nk~L~qaL 65 (86)
T PF02762_consen 1 THPGYMAF--LTYDEVKARLQHYRDKP---GSYIFRLSCTRLGQWAIGYVTQDGK---ILQTIPQ-------NKSLYQAL 65 (86)
T ss_dssp S-TTBETT----HHHHHHHHGGGTTST---TEEEEEEESSSTTSEEEEEEETTSE---EEEE--S-------SS-HHHHH
T ss_pred CCCceeEE--EeHHHHHHHHHHHhCCc---ccEEEeeccccccceeEEEEcCCCc---EEEecCC-------CchHHHHH
Confidence 35556553 68899999998776543 4699999999999999999864322 2333342 12225678
Q ss_pred HHHHHhcc
Q psy1815 159 FRWFKEHF 166 (238)
Q Consensus 159 i~~FK~~~ 166 (238)
++.+|+-+
T Consensus 66 idG~reG~ 73 (86)
T PF02762_consen 66 IDGSREGF 73 (86)
T ss_dssp HHHHHTTS
T ss_pred Hhccccce
Confidence 88888755
No 35
>PRK00907 hypothetical protein; Provisional
Probab=56.06 E-value=13 Score=29.14 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=14.9
Q ss_pred CccEEEecCCCCCCcEEEEEEe
Q psy1815 3 QGEVIVRPSSKGADHLTVTWKV 24 (238)
Q Consensus 3 ~Ge~IIRPSSkG~dhLtvTwKv 24 (238)
...+-+||||+| ..++||+.|
T Consensus 47 ~~~i~~r~Ss~G-kY~Svtv~i 67 (92)
T PRK00907 47 QERISWKHSSSG-KYVSVRIGF 67 (92)
T ss_pred cCcEEeccCCCC-EEEEEEEEE
Confidence 345667999998 567777543
No 36
>KOG3601|consensus
Probab=54.93 E-value=2.3 Score=38.41 Aligned_cols=63 Identities=19% Similarity=0.456 Sum_probs=47.2
Q ss_pred CCccEEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHHHHHHH
Q psy1815 2 DQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVSPMAA 72 (238)
Q Consensus 2 ~~Ge~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV~pm~~ 72 (238)
..|++|||=|-..++...++++..|+|+ |+.|.-.....-| |+ .++|..|.|+.++|=...+.
T Consensus 78 ~~G~fl~r~s~sSPg~fsgsvr~~d~vq-hfkvvrpa~~k~~-----lw--~skfnslnplv~Y~rt~s~~ 140 (222)
T KOG3601|consen 78 RDGDFLIRLSESSPGDFSGSVRFPDGVQ-HFKVVRPAFGKYF-----LW--SSKFNSLNPLVSYHRTASQS 140 (222)
T ss_pred CcchhhhhhhhcCcccccccccCCCCce-eccccccCccccc-----cc--hhhccCCCCCcccCcccccc
Confidence 4699999999999999999999999998 9998855433211 12 25788888887766555443
No 37
>KOG1930|consensus
Probab=53.54 E-value=38 Score=33.72 Aligned_cols=80 Identities=25% Similarity=0.517 Sum_probs=56.9
Q ss_pred HHHHHHhcCccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCceEEEEEecCC----------C-----cceE
Q psy1815 72 ANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPAS----------R-----SRHE 136 (238)
Q Consensus 72 ~~v~dl~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~~PG~F~L~y~~~~----------~-----~~~e 136 (238)
+.|+|--.+ |||. +.++|++-++|++ +.|. .|.+.=|..++|.|=|..+... + +||-
T Consensus 205 kFV~DTSKy-WYKP--~isREQAIalLrd---kePG--tFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHF 276 (483)
T KOG1930|consen 205 LFVKDTSKY-WYKP--NISREQAIALLRD---KEPG--TFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHF 276 (483)
T ss_pred eeeeccccc-ccCC--CCCHHHHHHHhhc---CCCC--eEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhh
Confidence 444443332 5565 5899999999963 3343 3555668899999999987431 1 3555
Q ss_pred EEEEeeCceEecc----ccccCHHHHH
Q psy1815 137 FISVTPEGFRFRG----QQFDSVNSLF 159 (238)
Q Consensus 137 ~I~V~p~Gf~fr~----~~f~sl~~Li 159 (238)
.|.-.|+|.++.| -.|.+|.+|+
T Consensus 277 LIE~spkGVkLKGC~nEP~FGSLSALV 303 (483)
T KOG1930|consen 277 LIEPSPKGVKLKGCDNEPVFGSLSALV 303 (483)
T ss_pred eeccCCCceeccCCCCCCccchhHHHH
Confidence 6889999999995 6799999986
No 38
>PF15599 Imm38: Immunity protein 38
Probab=51.12 E-value=76 Score=25.72 Aligned_cols=44 Identities=30% Similarity=0.407 Sum_probs=32.9
Q ss_pred EEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHHHHHHHHHH
Q psy1815 21 TWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVSPMAANVR 75 (238)
Q Consensus 21 TwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV~pm~~~v~ 75 (238)
.+-+.++-| |+...|.|+.+. ..+..|+|||+=-.++-++..+.
T Consensus 36 ~i~~~~~~Y-~~~~~ERG~~~~----------~r~T~~~dEllYwi~~di~~~iA 79 (124)
T PF15599_consen 36 YIEIDNDGY-HYVFYERGKEFS----------DRRTTDLDELLYWILDDIASTIA 79 (124)
T ss_pred EEEEeCCEE-EEEEEecCceee----------ecccCCHHHHHHHHHHHHHHHHH
Confidence 355666668 999999997643 46899999998777777765443
No 39
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=48.67 E-value=19 Score=28.41 Aligned_cols=17 Identities=47% Similarity=0.632 Sum_probs=12.3
Q ss_pred EEEecCCCCCCcEEEEEE
Q psy1815 6 VIVRPSSKGADHLTVTWK 23 (238)
Q Consensus 6 ~IIRPSSkG~dhLtvTwK 23 (238)
+..|||||| ++++|++-
T Consensus 48 ~~~k~SSkG-nY~svsI~ 64 (90)
T COG2921 48 VSWKPSSKG-NYLSVSIT 64 (90)
T ss_pred eeeccCCCC-ceEEEEEE
Confidence 456999998 66777643
No 40
>PLN02366 spermidine synthase
Probab=47.66 E-value=45 Score=31.09 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=34.1
Q ss_pred CcEEEEEEeeCC------eeEEEEEEeCCCCCcccccceEeECCe-eeCCHHHHH
Q psy1815 16 DHLTVTWKVADD------LYQHIDVREEGKENSFSLGRSLWIGTE-EFEDLDEII 63 (238)
Q Consensus 16 dhLtvTwKv~d~------vyqHidI~E~~K~n~~sLG~~L~Ig~e-efeDLDEII 63 (238)
..+.+++||.+- -||+|.|.|... .|+.|.++|. .+.+-||.+
T Consensus 27 ~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~-----~g~~L~lDg~~q~~~~de~~ 76 (308)
T PLN02366 27 PGEAHSLKVEKVLFQGKSDFQDVLVFESAT-----YGKVLVLDGVIQLTERDECA 76 (308)
T ss_pred CCceEEEEEeeEEEeccCCCeeEEEEEcCC-----CceEEEECCEeeecCccHHH
Confidence 346788888764 569999999864 5899999996 888889874
No 41
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=46.90 E-value=42 Score=30.12 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=32.4
Q ss_pred cEEEEEEeeCCe------eEEEEEEeCCCCCcccccceEeECCe-eeCCHHHHH
Q psy1815 17 HLTVTWKVADDL------YQHIDVREEGKENSFSLGRSLWIGTE-EFEDLDEII 63 (238)
Q Consensus 17 hLtvTwKv~d~v------yqHidI~E~~K~n~~sLG~~L~Ig~e-efeDLDEII 63 (238)
.+.++++|.+-+ ||||+|.|... .|+.|.++|. ...+.||.+
T Consensus 9 ~~~~~~~~~~~l~~~~s~~q~i~v~~~~~-----~g~~l~ldg~~q~~~~~e~~ 57 (270)
T TIGR00417 9 NFGLTMKVKKVLYHEKSEFQDLEIFETEE-----FGNVLVLDGVVQTTERDEFI 57 (270)
T ss_pred CceEEEEeeeEEEEccCCCeeEEEEEcCC-----CceEEEECCcccccCchHHH
Confidence 466777776654 59999999875 3889999985 777899975
No 42
>KOG1999|consensus
Probab=46.64 E-value=33 Score=37.22 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=13.4
Q ss_pred CCCCCCCCcCC-CCCCCCCCCCCCCCcC
Q psy1815 182 QTPYGGARQTP-GGGHLPYHTPGMTPHH 208 (238)
Q Consensus 182 ~~p~~~~~~~~-~~~~~~~~~~~~~~~~ 208 (238)
+||..++..|| .|+.|.+. -|++|++
T Consensus 789 ~Tp~~dG~rTP~r~~aW~~~-~~~tPa~ 815 (1024)
T KOG1999|consen 789 ATPSHDGSRTPARGRAWNPY-NGKTPAR 815 (1024)
T ss_pred CCcCCCCCcCCCCCCCcCCC-CCCCCcc
Confidence 44445555555 33344443 4666666
No 43
>PF14822 Vasohibin: Vasohibin
Probab=46.43 E-value=42 Score=30.93 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=42.8
Q ss_pred CCCCcEEEEEE--eeCCeeEEEE--EEeCCCCCcccccce--EeECCeeeCCHHHHHHHHHHHHHH
Q psy1815 13 KGADHLTVTWK--VADDLYQHID--VREEGKENSFSLGRS--LWIGTEEFEDLDEIIARHVSPMAA 72 (238)
Q Consensus 13 kG~dhLtvTwK--v~d~vyqHid--I~E~~K~n~~sLG~~--L~Ig~eefeDLDEIIaryV~pm~~ 72 (238)
.+.+.+.|++| +...+|+||- |...++..++.|.|. |-...-+|.+|.+||..|.+....
T Consensus 128 ~~~~Rfpi~Fks~~~g~~~~HIVL~v~~~~~~GalGlSRr~~Lm~k~l~~~sls~li~~y~~sY~~ 193 (246)
T PF14822_consen 128 PDVERFPISFKSQFSGRVFRHIVLGVRCGGKYGALGLSRRSDLMYKPLEFRSLSDLIFDYKESYEK 193 (246)
T ss_pred ccceEeeceeEEEEcCcEEEEEEEEEEECCeecccccccchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 34567777777 4677999987 566666644444443 444445999999999999998865
No 44
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=40.46 E-value=43 Score=32.23 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhcCccccccCCCCHHHHHHHHHHHHhcCCCcceE--EEEeCCCCCc----------eEEEEEec
Q psy1815 62 IIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHY--FVSLSKNYPG----------KFLLSYLP 129 (238)
Q Consensus 62 IIaryV~pm~~~v~dl~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y--~f~~s~~~PG----------~F~L~y~~ 129 (238)
-|+.-++-|.-.+++.+-= |.++ .+..++.|.+.++++|+.||- -.-+..++|- .|+|+|+|
T Consensus 101 tl~~si~S~Lpai~~gVI~--yNdc----~D~t~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYNy~ls~ip 174 (347)
T PF06306_consen 101 TLAESIESILPAIDEGVIG--YNDC----TDGTEEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYNYVLSFIP 174 (347)
T ss_pred hHHHHHHHHHHHHhccEEE--eecC----CCCHHHHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhhhhhcccc
Confidence 3444445555555665542 5432 233466678899999998852 2222222222 26777776
Q ss_pred CCCcceEEEEEeeCceEeccc
Q psy1815 130 ASRSRHEFISVTPEGFRFRGQ 150 (238)
Q Consensus 130 ~~~~~~e~I~V~p~Gf~fr~~ 150 (238)
. -.|+|+++.|-.++..+
T Consensus 175 k---~~w~iKID~DhIy~~~K 192 (347)
T PF06306_consen 175 K---NEWAIKIDADHIYDTKK 192 (347)
T ss_pred c---ceEEEEeccceeecHHH
Confidence 3 25789998887766655
No 45
>KOG2179|consensus
Probab=38.17 E-value=14 Score=38.37 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=49.5
Q ss_pred eeeCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCHHHHHHHHHHHHhcCC-CcceEEEEeCCCCCceEEEEEec
Q psy1815 54 EEFEDLDEIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNP-NKIHYFVSLSKNYPGKFLLSYLP 129 (238)
Q Consensus 54 eefeDLDEIIaryV~pm~~~v~dl~~HrkF~~~~~gs~~eve~~L~~ek~~nP-~ri~Y~f~~s~~~PG~F~L~y~~ 129 (238)
+.++|++.+...--+++-.++.|+.+|++|. +|.+|+....-.| ++-.+.||- |..-.+|..
T Consensus 418 e~~ed~~~~~~~~~~~lP~sv~~~K~Hp~fv---------ler~Lkk~q~l~P~k~p~~g~~k-----G~~E~VY~R 480 (669)
T KOG2179|consen 418 EDTEDIELLRRHTSEGLPTSVQDLKNHPLFV---------LERHLKKNQALKPCKKPTLGFTK-----GDVEAVYLR 480 (669)
T ss_pred HHHHHHHHHHHhccCCCCchHHHhccCchhh---------hHHHHhhcccccccccceeeeec-----CCceeeeeh
Confidence 5788888888888889999999999999998 8999998888788 555777773 444555553
No 46
>cd02062 Nitro_FMN_reductase Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.
Probab=36.99 E-value=1.2e+02 Score=22.72 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=34.9
Q ss_pred cCccccccCCCCHHHHHHHHHHHHhc--CCCcceEEEEeCCCCCceEEEEEec
Q psy1815 79 SFRYYREECGGMRDKAEEVLRQEKRN--NPNKIHYFVSLSKNYPGKFLLSYLP 129 (238)
Q Consensus 79 ~HrkF~~~~~gs~~eve~~L~~ek~~--nP~ri~Y~f~~s~~~PG~F~L~y~~ 129 (238)
+.|+|.+. .-+.++++++|..-..+ .-+..||-|.+-.+-|..+.++...
T Consensus 6 S~R~f~~~-~i~~~~l~~l~~~~~~aPs~~n~qp~~~~~v~~ap~~i~~~~~~ 57 (122)
T cd02062 6 SVRKFTDE-PVPEEVLEKILEAARYAPSGGNLQPWRFVVVYGAPVLIIVCADK 57 (122)
T ss_pred ecccCCCC-CCCHHHHHHHHHHHHhCCCcCCCCCEEEEEEeCCCEEEEEEecc
Confidence 56889764 57888999999776555 2245688777766667777666654
No 47
>PTZ00015 histone H4; Provisional
Probab=35.27 E-value=34 Score=27.45 Aligned_cols=49 Identities=6% Similarity=0.156 Sum_probs=41.2
Q ss_pred eECCeeeCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCHHHHHHHHHHH
Q psy1815 50 WIGTEEFEDLDEIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQE 101 (238)
Q Consensus 50 ~Ig~eefeDLDEIIaryV~pm~~~v~dl~~HrkF~~~~~gs~~eve~~L~~e 101 (238)
.|.+.-|+.|-+++..|.+.+++.+-.++.|-+=+. -+.+||+-.|+.+
T Consensus 47 RIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKT---Vt~~DV~~AlKr~ 95 (102)
T PTZ00015 47 RISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKT---VTAMDVVYALKRQ 95 (102)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---ccHHHHHHHHHhc
Confidence 456678999999999999999999999999987774 5788998887543
No 48
>KOG0555|consensus
Probab=34.91 E-value=97 Score=31.03 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=62.4
Q ss_pred eeCCHHHHHHH---H-HHHHHHHHHHHhc-------------CccccccCCCCHHHHHHHHHHHHhcCCCcceEEEEeCC
Q psy1815 55 EFEDLDEIIAR---H-VSPMAANVRELLS-------------FRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSK 117 (238)
Q Consensus 55 efeDLDEIIar---y-V~pm~~~v~dl~~-------------HrkF~~~~~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~ 117 (238)
-|=|+|+||.+ . ++-|-+.++|+.+ -+-|++ ..-+++-+||++---++++.--|-|.-+.
T Consensus 340 afltfd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f~~P~~PFkR---m~Y~dAI~wLke~~vk~edg~~fefGdDI 416 (545)
T KOG0555|consen 340 AFLTFDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDFKAPKRPFKR---MNYSDAIEWLKEHDVKKEDGTDFEFGDDI 416 (545)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCCCCCCCchhc---CCHHHHHHHHHhcCCcCccCcccccccch
Confidence 45567776643 2 2233355566655 234554 56788889998754455666667777642
Q ss_pred ---------CCCce-EEEE---------EecC--CCcc-eEEEEEe-eC-ceEec-cccccCHHHHHHHHHhccCCCCCC
Q psy1815 118 ---------NYPGK-FLLS---------YLPA--SRSR-HEFISVT-PE-GFRFR-GQQFDSVNSLFRWFKEHFRDPIPG 172 (238)
Q Consensus 118 ---------~~PG~-F~L~---------y~~~--~~~~-~e~I~V~-p~-Gf~fr-~~~f~sl~~Li~~FK~~~~~~~p~ 172 (238)
+.-|. ..|+ |+.+ ++.+ .|.|-|. |+ |=-.. ...-.+.++|++.||+.-.|+-|.
T Consensus 417 ~eAaER~mtdtIg~PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~pY 496 (545)
T KOG0555|consen 417 PEAAERKMTDTIGVPIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPDPY 496 (545)
T ss_pred hhHHHHhhhhhcCCceEEeeccccccceeeecccCccccceeeeeecCCccccccceeeeccHHHHHHHHhhcCCCCCCc
Confidence 11111 1222 2211 1122 2333331 11 11122 355678999999999999998765
No 49
>PHA03378 EBNA-3B; Provisional
Probab=33.95 E-value=1.5e+02 Score=31.58 Aligned_cols=6 Identities=33% Similarity=0.717 Sum_probs=2.2
Q ss_pred CCCCCC
Q psy1815 200 HTPGMT 205 (238)
Q Consensus 200 ~~~~~~ 205 (238)
.+||+|
T Consensus 739 ~aP~p~ 744 (991)
T PHA03378 739 AAPGRA 744 (991)
T ss_pred CCCCCC
Confidence 333333
No 50
>COG5634 Uncharacterized conserved protein [Function unknown]
Probab=33.60 E-value=3.5e+02 Score=24.33 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=77.2
Q ss_pred EEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCH--HHH--------------HHHHHHH
Q psy1815 6 VIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDL--DEI--------------IARHVSP 69 (238)
Q Consensus 6 ~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDL--DEI--------------IaryV~p 69 (238)
+..||--.|..|..+-+|-+|+-..-|-|-|.+++..- ..|.+-++.|+|- .|| ...++..
T Consensus 13 a~~k~~~~gs~~~~~~~~~~~~~~~ki~vn~~~~~~~~---~~~~~~d~nft~plt~~l~ql~~gl~~q~~~~~~~~~~~ 89 (223)
T COG5634 13 APFKPQYPGSPHYVINVKGSDDTIFKIVVNEIGEDGNN---NVYFYADLNFTDPLTEKLGQLPYGLQTQDFPRLDYWQDR 89 (223)
T ss_pred cccCCCCCCCCCeEEEEecCCCcEEEEEEEeecccCCc---ceEEEeecccCchhHHHHhcCCcCcccCccchhHHhccc
Confidence 56788888999999999999998878888888877442 2355556666651 111 2233333
Q ss_pred HHHHHHHHhcCccccccCCCCHHHHHHHHHHHHhc---CCCcceEEEEeC---CCCCceEEEEEecCC
Q psy1815 70 MAANVRELLSFRYYREECGGMRDKAEEVLRQEKRN---NPNKIHYFVSLS---KNYPGKFLLSYLPAS 131 (238)
Q Consensus 70 m~~~v~dl~~HrkF~~~~~gs~~eve~~L~~ek~~---nP~ri~Y~f~~s---~~~PG~F~L~y~~~~ 131 (238)
.....++|.--.|=. .|...++.++|.++.+. .|.-..|.|.-. +..--.+.+.|+|.+
T Consensus 90 ~lldpr~MkPlPy~~---~Gp~nDlNd~ie~yl~~a~~~~~t~ly~fg~~~gPe~~v~dk~FgFlP~n 154 (223)
T COG5634 90 SLLDPRRMKPLPYAD---EGPRNDLNDIIEEYLSIATTQPPTSLYYFGGNGGPENRVYDKGFGFLPKN 154 (223)
T ss_pred cccCHhHcCCCCcCC---CCCcccHHHHHHHHHHHhccCCCceeeccCCCCCcccccccceeeecCCC
Confidence 344555555555444 36667776666655332 477788888763 223556889999874
No 51
>PLN02823 spermine synthase
Probab=33.59 E-value=1.2e+02 Score=28.84 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=33.4
Q ss_pred EEEEEEeeCC------eeEEEEEEeCCCCCcccccceEeECCe-eeCCHHHHHHHHHHHHH
Q psy1815 18 LTVTWKVADD------LYQHIDVREEGKENSFSLGRSLWIGTE-EFEDLDEIIARHVSPMA 71 (238)
Q Consensus 18 LtvTwKv~d~------vyqHidI~E~~K~n~~sLG~~L~Ig~e-efeDLDEIIaryV~pm~ 71 (238)
+...+++.+- -||+|+|.|... .|+.|.++|. ...+.||++ |-+.|+
T Consensus 41 ~~~~~~~~~vl~~~~S~yQ~I~V~~~~~-----~g~~L~lDg~~qs~~~de~~--YhE~l~ 94 (336)
T PLN02823 41 LRWSYAVNSVLHTGTSEFQDIALVDTKP-----FGKVLIIDGKMQSAEADEFV--YHESLV 94 (336)
T ss_pred cceEEEeccEEEeccCCCeEEEEEECCC-----CceEEEECCccccccchHHH--HHHHHH
Confidence 4555555443 469999999875 3789999884 666779986 666654
No 52
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=32.92 E-value=93 Score=22.90 Aligned_cols=42 Identities=10% Similarity=0.099 Sum_probs=33.1
Q ss_pred eCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCHHHHHHHHHH
Q psy1815 56 FEDLDEIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQ 100 (238)
Q Consensus 56 feDLDEIIaryV~pm~~~v~dl~~HrkF~~~~~gs~~eve~~L~~ 100 (238)
=+.|-|++.+|++-+++.+....+|-.=. ..+..+++..|.+
T Consensus 29 le~ltdi~~~yl~~l~~~~~~~a~~agR~---~~~~~Dv~~Al~~ 70 (77)
T smart00576 29 LETLTDILQSYIQELGRTAHSYAELAGRT---EPNLGDVVLALEN 70 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCCHHHHHHHHHH
Confidence 35688999999999999999999874323 2578888887754
No 53
>PLN00035 histone H4; Provisional
Probab=32.89 E-value=40 Score=27.14 Aligned_cols=49 Identities=6% Similarity=0.039 Sum_probs=41.6
Q ss_pred eECCeeeCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCHHHHHHHHHHH
Q psy1815 50 WIGTEEFEDLDEIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQE 101 (238)
Q Consensus 50 ~Ig~eefeDLDEIIaryV~pm~~~v~dl~~HrkF~~~~~gs~~eve~~L~~e 101 (238)
.|.+.-|+.|-|++..|.+.+++.+-.+..|.+=+. -+.+||+-.|+.+
T Consensus 46 RIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKT---V~~~DV~~Alkr~ 94 (103)
T PLN00035 46 RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT---VTAMDVVYALKRQ 94 (103)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---CcHHHHHHHHHHc
Confidence 566678999999999999999999999999987774 5788998888643
No 54
>PRK10486 autoinducer-2 (AI-2) modifying protein LsrG; Provisional
Probab=32.77 E-value=1.4e+02 Score=22.69 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHH---HHhcCCCcceEEEEeCCCCCceEEEE
Q psy1815 89 GMRDKAEEVLRQ---EKRNNPNKIHYFVSLSKNYPGKFLLS 126 (238)
Q Consensus 89 gs~~eve~~L~~---ek~~nP~ri~Y~f~~s~~~PG~F~L~ 126 (238)
|..+++.+.|++ ...+.|+-+-|.+..+.+.|+.|++.
T Consensus 13 g~~~~~~~~l~~~~~~sr~EpGcl~y~~~~~~~~p~~~~~~ 53 (96)
T PRK10486 13 DKVDEFIEVFRQNHLGSIQEPGNLRFDVLQDPEVPTRFYIY 53 (96)
T ss_pred chHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCEEEEE
Confidence 566777777665 34557788888888888888888764
No 55
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=32.58 E-value=87 Score=24.06 Aligned_cols=58 Identities=21% Similarity=0.143 Sum_probs=35.3
Q ss_pred CCCccEEEecCCCC-CCcEEEEEEeeCCeeEE-EEEEeCCCCCcccccceEeECCeeeCCH
Q psy1815 1 MDQGEVIVRPSSKG-ADHLTVTWKVADDLYQH-IDVREEGKENSFSLGRSLWIGTEEFEDL 59 (238)
Q Consensus 1 ~~~Ge~IIRPSSkG-~dhLtvTwKv~d~vyqH-idI~E~~K~n~~sLG~~L~Ig~eefeDL 59 (238)
|++=|+-|||-+.. .=.-.+++.++|...+| |.|.|..+..-.+.= +-+.++.+|.|+
T Consensus 1 M~itdVri~~~~~~~~lka~asV~~dd~f~I~~ikVieg~~GlFVaMP-s~k~~~g~y~Di 60 (84)
T PF04026_consen 1 MKITDVRIRKIEPEGKLKAFASVTFDDCFVIHDIKVIEGEKGLFVAMP-SRKSKDGEYKDI 60 (84)
T ss_dssp --EEEEEEEETTSSSSEEEEEEEEETTTEEEEEEEEEEETTEEEEE---EEE-TTS-EEES
T ss_pred CccEEEEEEEecCCCCEEEEEEEEECCEEEEEeEEEEECCCCcEEECC-CcCCCCCCEEEE
Confidence 67778999998884 33446788898887778 999999765221111 123344566664
No 56
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=31.18 E-value=36 Score=24.72 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=39.4
Q ss_pred eECCeeeCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCHHHHHHHH
Q psy1815 50 WIGTEEFEDLDEIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVL 98 (238)
Q Consensus 50 ~Ig~eefeDLDEIIaryV~pm~~~v~dl~~HrkF~~~~~gs~~eve~~L 98 (238)
.|+++-++.|-|.++.+++.+++.+-..+.|-+=+. -+.++++..|
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRkt---lt~~DI~~Al 64 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTT---LTTSDIDSAL 64 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe---ecHHHHHHHh
Confidence 567789999999999999999999999999976663 6788887766
No 57
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=30.94 E-value=2.8e+02 Score=22.29 Aligned_cols=110 Identities=7% Similarity=0.034 Sum_probs=56.2
Q ss_pred eEeECCeeeCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCHHHHHHHHHHHHhcCCCcc--eEEEEeCCCCCceEEE
Q psy1815 48 SLWIGTEEFEDLDEIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKI--HYFVSLSKNYPGKFLL 125 (238)
Q Consensus 48 ~L~Ig~eefeDLDEIIaryV~pm~~~v~dl~~HrkF~~~~~gs~~eve~~L~~ek~~nP~ri--~Y~f~~s~~~PG~F~L 125 (238)
.|.+.--+-+|+++|..-+.++-.... ..+. +... ..+.++++++++.......+.. .|++..+.+.-|...|
T Consensus 10 rl~Lr~~~~~D~~~l~~~~~~~~~~~~-~~~~--~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l 84 (179)
T PRK10151 10 SLELHAVDESHVTPLHQLVCKNKTWLQ-QSLN--WPQF--VQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSF 84 (179)
T ss_pred cEEEEeCCHHHHHHHHHHHHHhHHHHH-hcCC--CcCc--cCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEE
Confidence 356666688899888877654332111 1111 1111 1378899999875432222222 3444444445566666
Q ss_pred EEecCCCcceE-EEEEeeCceEeccccccC--HHHHHHHHHhc
Q psy1815 126 SYLPASRSRHE-FISVTPEGFRFRGQQFDS--VNSLFRWFKEH 165 (238)
Q Consensus 126 ~y~~~~~~~~e-~I~V~p~Gf~fr~~~f~s--l~~Li~~FK~~ 165 (238)
......+...+ -+.+.|+ |+++-+.+ +..|++|.+..
T Consensus 85 ~~~~~~~~~~~ig~~i~~~---~~g~G~~tea~~~l~~~~~~~ 124 (179)
T PRK10151 85 NRIEPLNKTAYIGYWLDES---HQGQGIISQALQALIHHYAQS 124 (179)
T ss_pred EeeccCCCceEEEEEEChh---hcCCcHHHHHHHHHHHHHHhh
Confidence 55422111122 2344443 56655554 56788877654
No 58
>PRK00536 speE spermidine synthase; Provisional
Probab=30.15 E-value=90 Score=28.66 Aligned_cols=60 Identities=8% Similarity=0.081 Sum_probs=44.7
Q ss_pred CcEEEEEEeeCC------eeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHHHHHH------------------
Q psy1815 16 DHLTVTWKVADD------LYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVSPMA------------------ 71 (238)
Q Consensus 16 dhLtvTwKv~d~------vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV~pm~------------------ 71 (238)
+.+.++++|.+- -||+|.|-|.. ..||.|.+++..-.+-||.|- =|.|+
T Consensus 9 ~~~~~~~~v~~~L~~~kS~~Q~i~i~es~-----~fGr~LvLD~~~~te~dEfiY--HEmLvHppl~~h~~pk~VLIiGG 81 (262)
T PRK00536 9 PYLRKEYTIEAKLLDVRSEHNILEIFKSK-----DFGEIAMLNKQLLFKNFLHIE--SELLAHMGGCTKKELKEVLIVDG 81 (262)
T ss_pred CCceEEEEEEEEEEccCCCCcEEEEEEcc-----ccccEEEEeeeeeecchhhhH--HHHHHHHHHhhCCCCCeEEEEcC
Confidence 346777777653 57999999987 569999999876688998873 23332
Q ss_pred ---HHHHHHhcCcc
Q psy1815 72 ---ANVRELLSFRY 82 (238)
Q Consensus 72 ---~~v~dl~~Hrk 82 (238)
.-++|+++|+.
T Consensus 82 GDGg~~REvLkh~~ 95 (262)
T PRK00536 82 FDLELAHQLFKYDT 95 (262)
T ss_pred CchHHHHHHHCcCC
Confidence 48899999974
No 59
>PHA03120 tegument protein VP22; Provisional
Probab=30.02 E-value=36 Score=31.60 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=19.6
Q ss_pred eeeCCHHHHHHHHHHHHHH--HHHHHh
Q psy1815 54 EEFEDLDEIIARHVSPMAA--NVRELL 78 (238)
Q Consensus 54 eefeDLDEIIaryV~pm~~--~v~dl~ 78 (238)
..||||||+|+-|-+.-.+ +|+|..
T Consensus 94 ddfedidev~aaf~earl~he~vedav 120 (310)
T PHA03120 94 DDFEDIDEVIAAFKEARLKHEHVEDAV 120 (310)
T ss_pred cchhhHHHHHHHHHHHHhhhHHhhHhH
Confidence 5899999999999988764 455543
No 60
>KOG1979|consensus
Probab=29.93 E-value=95 Score=32.33 Aligned_cols=70 Identities=24% Similarity=0.380 Sum_probs=49.2
Q ss_pred CCCccEEEecCC---------CCCCcEEEEEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHHHHHH
Q psy1815 1 MDQGEVIVRPSS---------KGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVSPMA 71 (238)
Q Consensus 1 ~~~Ge~IIRPSS---------kG~dhLtvTwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV~pm~ 71 (238)
|..||+|.||-+ -..+.-.++++|-||=..=+.|...|+ |-.++||+=|-+||..--.
T Consensus 19 IAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk~GGLKLlQisDnG~-------------GI~reDl~ilCeRftTSKL 85 (694)
T KOG1979|consen 19 IAAGEVIQRPVNALKELIENSLDANSTSIDVLVKDGGLKLLQISDNGS-------------GIRREDLPILCERFTTSKL 85 (694)
T ss_pred hhccchhhchHHHHHHHHhccccCCCceEEEEEecCCeEEEEEecCCC-------------ccchhhhHHHHHHhhhhhc
Confidence 457999999964 223344455555555443333433332 4689999999999999999
Q ss_pred HHHHHHhcCccc
Q psy1815 72 ANVRELLSFRYY 83 (238)
Q Consensus 72 ~~v~dl~~HrkF 83 (238)
.+.+|+.+-.-|
T Consensus 86 ~kFEDL~~lsTy 97 (694)
T KOG1979|consen 86 TKFEDLFSLSTY 97 (694)
T ss_pred chhHHHHhhhhc
Confidence 999999987766
No 61
>PHA03378 EBNA-3B; Provisional
Probab=29.09 E-value=2.1e+02 Score=30.60 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCCCCCCcCCC
Q psy1815 191 TPGGGHLPYHTPGMTPHHRG 210 (238)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~ 210 (238)
+||=-.-|-.+||+|--.-+
T Consensus 740 aP~p~~PPa~aP~~~~~P~~ 759 (991)
T PHA03378 740 APGRARPPAAAPGRARPPAA 759 (991)
T ss_pred CCCCCCCCCCCCccccCCCC
Confidence 33333334455555443333
No 62
>KOG3697|consensus
Probab=28.98 E-value=79 Score=30.19 Aligned_cols=50 Identities=26% Similarity=0.572 Sum_probs=39.1
Q ss_pred CCCCceEEEEEecCCCcceEEEEEeeCceEe-ccccccCHHHHHHHHHhccC
Q psy1815 117 KNYPGKFLLSYLPASRSRHEFISVTPEGFRF-RGQQFDSVNSLFRWFKEHFR 167 (238)
Q Consensus 117 ~~~PG~F~L~y~~~~~~~~e~I~V~p~Gf~f-r~~~f~sl~~Li~~FK~~~~ 167 (238)
...||.|+|.=+-+..++|- +-|.|+|-.= ..+.|.|+..||||--.+..
T Consensus 276 ~~~~gqyvltgl~~~~~khl-llvdpegvvrtkd~~fdsishli~yh~~~~l 326 (345)
T KOG3697|consen 276 TTTPGQYVLTGLQSGQPKHL-LLVDPEGVVRTKDRRFDSISHLINYHMDNHL 326 (345)
T ss_pred cCCCccEEEecccCCCcceE-EEECCccceecccchhhHHHHHHHHhhhccC
Confidence 35799999998877766654 6789988643 47999999999999765543
No 63
>PRK02047 hypothetical protein; Provisional
Probab=27.81 E-value=69 Score=24.72 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=12.3
Q ss_pred EEEecCCCCCCcEEEEEEe
Q psy1815 6 VIVRPSSKGADHLTVTWKV 24 (238)
Q Consensus 6 ~IIRPSSkG~dhLtvTwKv 24 (238)
+-.||||+| ..+++|+.+
T Consensus 49 i~~k~Ss~G-kY~Svtv~v 66 (91)
T PRK02047 49 IEERPSSGG-NYTGLTITV 66 (91)
T ss_pred eEEccCCCC-eEEEEEEEE
Confidence 457999998 566666543
No 64
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=27.47 E-value=35 Score=15.73 Aligned_cols=7 Identities=43% Similarity=0.748 Sum_probs=4.7
Q ss_pred CCCCCCC
Q psy1815 192 PGGGHLP 198 (238)
Q Consensus 192 ~~~~~~~ 198 (238)
|-||+|+
T Consensus 1 phgG~Wg 7 (8)
T PF03991_consen 1 PHGGGWG 7 (8)
T ss_pred CCCCcCC
Confidence 4577775
No 65
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=27.31 E-value=1e+02 Score=29.06 Aligned_cols=13 Identities=31% Similarity=0.693 Sum_probs=10.6
Q ss_pred CeeeCCHHHHHHH
Q psy1815 53 TEEFEDLDEIIAR 65 (238)
Q Consensus 53 ~eefeDLDEIIar 65 (238)
..+|++||||+++
T Consensus 279 e~kF~s~d~L~~q 291 (304)
T COG0196 279 EKKFDSLDELKEQ 291 (304)
T ss_pred ccCCCCHHHHHHH
Confidence 4699999999854
No 66
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=26.70 E-value=1.5e+02 Score=26.43 Aligned_cols=62 Identities=29% Similarity=0.456 Sum_probs=44.1
Q ss_pred CCcEEEEEEeeCC------eeEEEEEEeCCCCCcccccceEeECCe-eeCCHHHHHHHHHHHHH----------------
Q psy1815 15 ADHLTVTWKVADD------LYQHIDVREEGKENSFSLGRSLWIGTE-EFEDLDEIIARHVSPMA---------------- 71 (238)
Q Consensus 15 ~dhLtvTwKv~d~------vyqHidI~E~~K~n~~sLG~~L~Ig~e-efeDLDEIIaryV~pm~---------------- 71 (238)
.+.+.+.+||.+- .||||.|.|.. ..|+.|.++|. ...+-||.+ |-+.|+
T Consensus 11 ~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~-----~~G~~l~ldg~~q~~e~de~~--y~e~l~h~~~~~~~~p~~VLii 83 (246)
T PF01564_consen 11 DPGLGVSYRVEEVLYEEKSPYQHIEIFESS-----PFGRILVLDGDVQLSERDEFI--YHEMLVHPPLLLHPNPKRVLII 83 (246)
T ss_dssp STTEEEEEEEEEEEEEEEESSSEEEEEEET-----TTEEEEEETTEEEEETTTHHH--HHHHHHHHHHHHSSST-EEEEE
T ss_pred CCCceEEEEEEEEEEccCCCCCcEEEEEec-----CcCcEEEECCeEEEEEechHH--HHHHHhhhHhhcCCCcCceEEE
Confidence 3668888888765 46999999985 45888999985 677778754 444443
Q ss_pred -----HHHHHHhcCccc
Q psy1815 72 -----ANVRELLSFRYY 83 (238)
Q Consensus 72 -----~~v~dl~~HrkF 83 (238)
..++++.+|.-.
T Consensus 84 GgG~G~~~~ell~~~~~ 100 (246)
T PF01564_consen 84 GGGDGGTARELLKHPPV 100 (246)
T ss_dssp ESTTSHHHHHHTTSTT-
T ss_pred cCCChhhhhhhhhcCCc
Confidence 378888888744
No 67
>KOG3645|consensus
Probab=26.44 E-value=54 Score=31.99 Aligned_cols=34 Identities=35% Similarity=0.470 Sum_probs=29.0
Q ss_pred cEEEecCCCCCCcEEEEEEeeCCeeEEEEEEeCCCC
Q psy1815 5 EVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKE 40 (238)
Q Consensus 5 e~IIRPSSkG~dhLtvTwKv~d~vyqHidI~E~~K~ 40 (238)
+-.+||+.+..+ ++++.+.-.++|+++|.|.++-
T Consensus 42 ~~~vrPv~~~~~--~v~V~~~~~l~qii~VdE~~q~ 75 (449)
T KOG3645|consen 42 NKLVRPVKNSSD--PVTVNFGLVLYQIIEVDEKNQI 75 (449)
T ss_pred cccCCccCCCCC--cEEEEEEEEEEEEEeeccccce
Confidence 346899999877 8889999999999999998754
No 68
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=25.54 E-value=2.2e+02 Score=20.91 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=29.8
Q ss_pred CCeeeCCHHHHHHHHHHH---HH-HHHHHHhcCccccccCCCCHHHHHHHHHHHHhcC
Q psy1815 52 GTEEFEDLDEIIARHVSP---MA-ANVRELLSFRYYREECGGMRDKAEEVLRQEKRNN 105 (238)
Q Consensus 52 g~eefeDLDEIIaryV~p---m~-~~v~dl~~HrkF~~~~~gs~~eve~~L~~ek~~n 105 (238)
+|++|+|+.||-..-.+- .+ ..++.++++--=+.-...+..++++++.+.++.+
T Consensus 2 dG~~f~~~~eLk~~L~~~~~~~~~~~~~kl~~YAlGR~~~~~D~~~i~~i~~~~~~~~ 59 (76)
T PF07624_consen 2 DGTSFEGAAELKQYLAERKDQFARCFAEKLLTYALGRPLEFSDRCEIDRIVEAFKANG 59 (76)
T ss_pred CCCccCCHHHHHHHHHHCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHcC
Confidence 478999999885433333 22 2344444432112222357788888887655543
No 69
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=25.25 E-value=1.2e+02 Score=31.30 Aligned_cols=37 Identities=11% Similarity=0.358 Sum_probs=31.0
Q ss_pred CCccEEEecCC---CCCCcEEEEEEeeCCeeEEEEEEeCCCCC
Q psy1815 2 DQGEVIVRPSS---KGADHLTVTWKVADDLYQHIDVREEGKEN 41 (238)
Q Consensus 2 ~~Ge~IIRPSS---kG~dhLtvTwKv~d~vyqHidI~E~~K~n 41 (238)
..||.||-|.+ .-.+|++|...|.++ +|.|-|++-.+
T Consensus 113 ~~gdLlI~~~~~~~~p~GHVAVVt~V~~~---~V~iaeQN~~~ 152 (619)
T PRK10507 113 EAGALLIWDKGGEFKDTGHVAIITQLHGN---KVRIAEQNVIH 152 (619)
T ss_pred CCCcEEEeCCCCCCCCCceEEEEEEEcCC---eEEEEeccccc
Confidence 47999999965 346999999999997 79999998754
No 70
>PF01687 Flavokinase: Riboflavin kinase; InterPro: IPR015865 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents the riboflavin kinase domains from bacteria and eukaryotes.; GO: 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process; PDB: 1Q9S_A 1NB9_A 1P4M_A 1NB0_A 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A ....
Probab=24.57 E-value=57 Score=26.65 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=12.5
Q ss_pred cccceEeE-------CCeeeCCHHHHHHHH
Q psy1815 44 SLGRSLWI-------GTEEFEDLDEIIARH 66 (238)
Q Consensus 44 sLG~~L~I-------g~eefeDLDEIIary 66 (238)
=.|+.+.| +..+|++||||+++-
T Consensus 84 lYg~~i~v~~~~~lR~e~kF~s~e~L~~qI 113 (125)
T PF01687_consen 84 LYGKKIKVEFLKFLRPEKKFDSLEELKEQI 113 (125)
T ss_dssp -TTSEEEEEEEEEEEE----SSHHHHHHHH
T ss_pred cCCCeEEEEEEeCccCCcccCCHHHHHHHH
Confidence 35565554 246999999998653
No 71
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=24.07 E-value=6.2e+02 Score=23.95 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCcceEEEEeCCC-CCceEEEEEecCCCcceEEEEEeeCceEeccccccCHHHH
Q psy1815 88 GGMRDKAEEVLRQEKRNNPNKIHYFVSLSKN-YPGKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSL 158 (238)
Q Consensus 88 ~gs~~eve~~L~~ek~~nP~ri~Y~f~~s~~-~PG~F~L~y~~~~~~~~e~I~V~p~Gf~fr~~~f~sl~~L 158 (238)
.|+.+.++.-|+.+++.+ --.|.++++++ .|....=. +...++- .-|-.-.|||.=..+.|.+|+.-
T Consensus 112 DGD~~YL~~Cl~~Ykql~--i~a~G~~~~E~eqp~~i~~L-l~~~~PD-IlViTGHD~~~K~~~d~~dl~~Y 179 (287)
T PF05582_consen 112 DGDEEYLNKCLKVYKQLG--IPAVGIHVPEKEQPEKIYRL-LEEYRPD-ILVITGHDGYLKNKKDYSDLNNY 179 (287)
T ss_pred cCCHHHHHHHHHHHHHcC--CceEEEEechHHhhHHHHHH-HHHcCCC-EEEEeCchhhhcCCCChhhhhhh
Confidence 478999999999998865 33788888764 45432111 1111111 12333457776555555555543
No 72
>PF05257 CHAP: CHAP domain; InterPro: IPR007921 The CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain is a region between 110 and 140 amino acids that is found in proteins from bacteria, bacteriophages, archaea and eukaryotes of the Trypanosomidae family. Many of these proteins are uncharacterised, but it has been proposed that they may function mainly in peptidoglycan hydrolysis. The CHAP domain is found in a wide range of protein architectures; it is commonly associated with bacterial type SH3 domains and with several families of amidase domains. It has been suggested that CHAP domain containing proteins utilise a catalytic cysteine residue in a nucleophilic-attack mechanism [, ]. The CHAP domain contains two invariant residues, a cysteine and a histidine. These residues form part of the putative active site of CHAP domain containing proteins. Secondary structure predictions show that the CHAP domain belongs to the alpha + beta structural class, with the N-terminal half largely containing predicted alpha helices and the C-terminal half principally composed of predicted beta strands [, ]. Some proteins known to contain a CHAP domain are listed below: Bacterial and trypanosomal glutathionylspermidine amidases. A variety of bacterial autolysins. A Nocardia aerocolonigenes putative esterase. Streptococcus pneumoniae choline-binding protein D. Methanosarcina mazei protein MM2478, a putative chloride channel. Several phage-encoded peptidoglycan hydrolases. Cysteine peptidases belonging to MEROPS peptidase family C51 (D-alanyl-glycyl endopeptidase, clan CA). ; PDB: 2LRJ_A 2VPM_B 2VOB_B 2VPS_A 2K3A_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B ....
Probab=23.44 E-value=1.9e+02 Score=22.45 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=26.3
Q ss_pred CCccEEEe--cCCCCCCcEEEEEEe-eCCeeEEEEEEeCCCC
Q psy1815 2 DQGEVIVR--PSSKGADHLTVTWKV-ADDLYQHIDVREEGKE 40 (238)
Q Consensus 2 ~~Ge~IIR--PSSkG~dhLtvTwKv-~d~vyqHidI~E~~K~ 40 (238)
..||+++= -+..+.+|.+|..+| .++ .|.|.|.+-.
T Consensus 64 ~~Gdivv~~~~~~~~~GHVaIV~~v~~~~---~i~v~e~N~~ 102 (124)
T PF05257_consen 64 QPGDIVVWDSGSGGGYGHVAIVESVNDGG---TITVIEQNWG 102 (124)
T ss_dssp -TTEEEEEEECTTTTT-EEEEEEEE-TTS---EEEEEECSST
T ss_pred ccceEEEeccCCCCCCCeEEEEEEECCCC---EEEEEECCcC
Confidence 57898886 455556999999999 555 5789999864
No 73
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=23.26 E-value=1.7e+02 Score=23.28 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=20.8
Q ss_pred EEecCCCCCCcEEEEEE-eeCCeeEEEEEEe
Q psy1815 7 IVRPSSKGADHLTVTWK-VADDLYQHIDVRE 36 (238)
Q Consensus 7 IIRPSSkG~dhLtvTwK-v~d~vyqHidI~E 36 (238)
+.||+.+..|. +++.+ .++|.| ...+..
T Consensus 92 l~rp~~~~~D~-~~~l~~~~~g~y-~~~~~~ 120 (146)
T PF05751_consen 92 LYRPTDAKLDF-TLTLTESAPGVY-RAPVPL 120 (146)
T ss_pred EECCCCccCCe-eEEeeECCCceE-EEEcCC
Confidence 56999998774 88888 888888 444433
No 74
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=22.62 E-value=2.7e+02 Score=21.54 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHhcCCCcceEEEEe-CCCCCceEEEEEecCCCcceE-EEEEeeCceEeccccccCHHHHHHHH
Q psy1815 89 GMRDKAEEVLRQEKRNNPNKIHYFVSL-SKNYPGKFLLSYLPASRSRHE-FISVTPEGFRFRGQQFDSVNSLFRWF 162 (238)
Q Consensus 89 gs~~eve~~L~~ek~~nP~ri~Y~f~~-s~~~PG~F~L~y~~~~~~~~e-~I~V~p~Gf~fr~~~f~sl~~Li~~F 162 (238)
.+.+..+++|..... .++...|.+.. +-+-=|.+.+.-.-..+...+ .+.|.+ -|+-++---.-++.|++++
T Consensus 32 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~~~~v~~-~~~~~gig~~l~~~l~~~a 105 (155)
T PF13420_consen 32 DSEESFERWIESIID-SSKQRLFLVAEEDGKIIGYVSLRDIDPYNHTAELSIYVSP-DYRGKGIGRKLLDELIEYA 105 (155)
T ss_dssp S-HHHHHHHHHHHHH-HHTTEEEEEEECTTEEEEEEEEEESSSGTTEEEEEEEEEG-GGTTSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcc-cCCCcEEEEEEcCCcEEEEEEEEeeeccCCEEEEeeEECh-hHCCCcHHHHHHHHHHHHh
Confidence 367788899987633 24456677666 445567776664433222222 356653 3333332233466777777
No 75
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=22.48 E-value=95 Score=23.15 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=14.3
Q ss_pred CccEEEecCCCCCCcEEEEEEe
Q psy1815 3 QGEVIVRPSSKGADHLTVTWKV 24 (238)
Q Consensus 3 ~Ge~IIRPSSkG~dhLtvTwKv 24 (238)
...+-.|+||+| .+++||+.+
T Consensus 40 ~~~~~~k~S~~G-kY~Svtv~v 60 (85)
T PF04359_consen 40 DEKVSSKPSSKG-KYVSVTVSV 60 (85)
T ss_dssp SEEEEECCSTTS-SEEEEEEEE
T ss_pred cCceEEecCCCC-eEEEEEEEE
Confidence 456678888886 677777643
No 76
>PRK00341 hypothetical protein; Provisional
Probab=22.22 E-value=94 Score=24.06 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=11.7
Q ss_pred cEEEecCCCCCCcEEEEEE
Q psy1815 5 EVIVRPSSKGADHLTVTWK 23 (238)
Q Consensus 5 e~IIRPSSkG~dhLtvTwK 23 (238)
.+-.|+||+| ..+++|+.
T Consensus 48 ~~~~k~Ss~G-kY~S~tv~ 65 (91)
T PRK00341 48 TLAERQSSNG-KYTTVQLH 65 (91)
T ss_pred ceeeccCCCC-EEEEEEEE
Confidence 3456899987 45566543
No 77
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=22.08 E-value=35 Score=23.84 Aligned_cols=14 Identities=29% Similarity=0.731 Sum_probs=11.4
Q ss_pred CCeeeCCHHHHHHH
Q psy1815 52 GTEEFEDLDEIIAR 65 (238)
Q Consensus 52 g~eefeDLDEIIar 65 (238)
+...|.+||+||++
T Consensus 33 ~~~Nf~~lD~li~~ 46 (49)
T PF07535_consen 33 NDSNFKELDSLISQ 46 (49)
T ss_pred CcccHHHHHHHHHH
Confidence 44689999999975
No 78
>PRK01581 speE spermidine synthase; Validated
Probab=21.98 E-value=1.6e+02 Score=28.63 Aligned_cols=37 Identities=22% Similarity=0.445 Sum_probs=28.8
Q ss_pred CeeEEEEEEeCCCCCcccccceEeECCe-eeCCHHHHHHHHHHHHHH
Q psy1815 27 DLYQHIDVREEGKENSFSLGRSLWIGTE-EFEDLDEIIARHVSPMAA 72 (238)
Q Consensus 27 ~vyqHidI~E~~K~n~~sLG~~L~Ig~e-efeDLDEIIaryV~pm~~ 72 (238)
.-||+|.|.|... | .|.++|. .+...||.| |-+.|+.
T Consensus 105 S~yQ~I~I~et~~---~----~L~LDG~~Q~se~DE~i--YHE~Lvh 142 (374)
T PRK01581 105 SNYQNINLLQVSD---I----RLYLDKQLQFSSVDEQI--YHEALVH 142 (374)
T ss_pred CCCceEEEEEcCC---E----EEEECCeeccccccHHH--HHHHHHH
Confidence 4689999999873 3 3888886 799999998 6666643
No 79
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=21.93 E-value=1e+02 Score=21.93 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcC
Q psy1815 58 DLDEIIARHVSPMAANVRELLSF 80 (238)
Q Consensus 58 DLDEIIaryV~pm~~~v~dl~~H 80 (238)
.||++.+.||.-+.+.=++|.++
T Consensus 10 ELDqFMeaYc~~L~kykeeL~~p 32 (52)
T PF03791_consen 10 ELDQFMEAYCDMLVKYKEELQRP 32 (52)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999888888776
No 80
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=21.66 E-value=93 Score=25.33 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=13.7
Q ss_pred EEEecCCCCCCcEEEEEEeeC
Q psy1815 6 VIVRPSSKGADHLTVTWKVAD 26 (238)
Q Consensus 6 ~IIRPSSkG~dhLtvTwKv~d 26 (238)
+-+||++.-..+.+|.||+--
T Consensus 16 l~LrP~~~Qtk~~sv~WK~~l 36 (108)
T PF11465_consen 16 LQLRPSNIQTKVYSVQWKMQL 36 (108)
T ss_dssp EEE--SS---SSEEEEEEEEE
T ss_pred EEECCCCccceeEEEEEEEEc
Confidence 568999999999999999864
No 81
>PHA00743 helix-turn-helix protein
Probab=21.59 E-value=2e+02 Score=20.52 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=20.7
Q ss_pred eCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCHHHHHHHHH
Q psy1815 56 FEDLDEIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLR 99 (238)
Q Consensus 56 feDLDEIIaryV~pm~~~v~dl~~HrkF~~~~~gs~~eve~~L~ 99 (238)
|.+|||.|- -+...+.+|.-----. +-+++.+|+.|-
T Consensus 1 f~eLD~~iR----eLLs~iheIKID~i~~---~~~k~kvekAl~ 37 (51)
T PHA00743 1 FLELDEDVR----ELLSIIHEIKIDIITQ---SYDKEKIEKAIF 37 (51)
T ss_pred CchhHHHHH----HHHHHHHHHhhhhhcc---cCCHHHHHHHHH
Confidence 678998874 4444555443321111 135778887764
No 82
>KOG0132|consensus
Probab=21.54 E-value=1.4e+02 Score=31.93 Aligned_cols=86 Identities=17% Similarity=0.286 Sum_probs=44.8
Q ss_pred cceEeECCe----eeCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCHHHHHHHHHHHH--hcCCCcc--eEEEEeCC
Q psy1815 46 GRSLWIGTE----EFEDLDEIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEK--RNNPNKI--HYFVSLSK 117 (238)
Q Consensus 46 G~~L~Ig~e----efeDLDEIIaryV~pm~~~v~dl~~HrkF~~~~~gs~~eve~~L~~ek--~~nP~ri--~Y~f~~s~ 117 (238)
.++||||+- .=.||-.+++.|=+-.--++.--..|-+-+ .-.+.++++.|++.+ +.+++.| .|++..=.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~---M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIK---MVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEE---EeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 478999984 344666666665433322222233333333 235677777776543 2345556 77766522
Q ss_pred --CCCceEEE----EEecCCCcc
Q psy1815 118 --NYPGKFLL----SYLPASRSR 134 (238)
Q Consensus 118 --~~PG~F~L----~y~~~~~~~ 134 (238)
++-.++-+ +|||-.+..
T Consensus 498 kse~k~~wD~~lGVt~IP~~kLt 520 (894)
T KOG0132|consen 498 KSEYKDYWDVELGVTYIPWEKLT 520 (894)
T ss_pred chhhhhhhhcccCeeEeehHhcC
Confidence 34444433 566654443
No 83
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=21.10 E-value=2.9e+02 Score=24.58 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhcCCCcceEEEE-eCCC---CCceEEEEEecCCCcceEEEEEeeCceEeccccccCHHHHHHHHHh
Q psy1815 89 GMRDKAEEVLRQEKRNNPNKIHYFVS-LSKN---YPGKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKE 164 (238)
Q Consensus 89 gs~~eve~~L~~ek~~nP~ri~Y~f~-~s~~---~PG~F~L~y~~~~~~~~e~I~V~p~Gf~fr~~~f~sl~~Li~~FK~ 164 (238)
.+.+++.+.+.+.++.+ ||.-.. ++.. .-+.|. |.|..+.|++..+|++++|+
T Consensus 21 ~~~~~v~~~~~~~~~~~---iP~d~~~lD~~~~~~~~~f~--------------------~~~d~~~Fpdp~~~i~~l~~ 77 (265)
T cd06589 21 GDQDKVLEVIDGMREND---IPLDGFVLDDDYTDGYGDFT--------------------FDWDAGKFPNPKSMIDELHD 77 (265)
T ss_pred CCHHHHHHHHHHHHHcC---CCccEEEECcccccCCceee--------------------eecChhhCCCHHHHHHHHHH
Confidence 47889999998888876 554221 1211 111221 46667777777777776665
No 84
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=20.89 E-value=96 Score=23.95 Aligned_cols=49 Identities=4% Similarity=0.085 Sum_probs=40.8
Q ss_pred eECCeeeCCHHHHHHHHHHHHHHHHHHHhcCccccccCCCCHHHHHHHHHHH
Q psy1815 50 WIGTEEFEDLDEIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQE 101 (238)
Q Consensus 50 ~Ig~eefeDLDEIIaryV~pm~~~v~dl~~HrkF~~~~~gs~~eve~~L~~e 101 (238)
.|.+.-|+.|-+++..|.+.+++.+-....|.+=+. -+.++|+-.|+.+
T Consensus 30 RIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKT---Vt~~DV~~alkr~ 78 (85)
T cd00076 30 RISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKT---VTAMDVVYALKRQ 78 (85)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---CcHHHHHHHHHHC
Confidence 566678999999999999999999999999977774 5788898887643
No 85
>PF10827 DUF2552: Protein of unknown function (DUF2552) ; InterPro: IPR020157 This entry contains proteins with no known function.
Probab=20.64 E-value=1.3e+02 Score=22.96 Aligned_cols=31 Identities=19% Similarity=0.515 Sum_probs=25.4
Q ss_pred EEEeeCceEeccccccCHHHHHHHHHhccCC
Q psy1815 138 ISVTPEGFRFRGQQFDSVNSLFRWFKEHFRD 168 (238)
Q Consensus 138 I~V~p~Gf~fr~~~f~sl~~Li~~FK~~~~~ 168 (238)
|-+.-+--.|..+.|+++|..++|.++|.-+
T Consensus 44 VWLLQdEmTFet~eF~tld~Ai~Wi~e~M~~ 74 (79)
T PF10827_consen 44 VWLLQDEMTFETQEFPTLDLAIAWIGEHMPH 74 (79)
T ss_pred eEEEecceeEeecccccHHHHHHHHHhcccc
Confidence 4455577889999999999999999988643
No 86
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=20.39 E-value=1.4e+02 Score=19.66 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=20.6
Q ss_pred eeeCCHHHHHHHHHHHHHHHHHHHhcCcc
Q psy1815 54 EEFEDLDEIIARHVSPMAANVRELLSFRY 82 (238)
Q Consensus 54 eefeDLDEIIaryV~pm~~~v~dl~~Hrk 82 (238)
.+|++.+| +++|...+...+.=+.+.|+
T Consensus 9 ~~~aspee-l~~Y~~~L~~Y~~lvtRpRy 36 (36)
T PF00159_consen 9 GDFASPEE-LAQYYAALRHYINLVTRPRY 36 (36)
T ss_dssp STTSSHHH-HHHHHHHHHHHHHHHTTTC-
T ss_pred CCCCCHHH-HHHHHHHHHHHHHHHccCCC
Confidence 35666666 78899999888887777664
No 87
>KOG1690|consensus
Probab=20.34 E-value=2.4e+02 Score=25.52 Aligned_cols=55 Identities=13% Similarity=0.302 Sum_probs=41.0
Q ss_pred EEEeeCCeeEEEEEEeCCCCCcccccceEeECCeeeCCHHHHHHHHHHHHHHHHHHHhcCccccc
Q psy1815 21 TWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVSPMAANVRELLSFRYYRE 85 (238)
Q Consensus 21 TwKv~d~vyqHidI~E~~K~n~~sLG~~L~Ig~eefeDLDEIIaryV~pm~~~v~dl~~HrkF~~ 85 (238)
-|+-+-..-+|+||+-.++.+..+ +=++=|+++..-|..++..+.+|.....+.+
T Consensus 112 awf~~aklRvhld~qvG~~a~l~a----------~~ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R 166 (215)
T KOG1690|consen 112 AWFNGAKLRVHLDIQVGDHANLDA----------QIKETDKLLEGRVRQLNSRLESIRKEQNLQR 166 (215)
T ss_pred hhhccceEEEEEEEeeCchhhhhh----------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777899999888876532 2233355666689999999999999988874
No 88
>PRK00811 spermidine synthase; Provisional
Probab=20.24 E-value=1.9e+02 Score=26.26 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=31.0
Q ss_pred CcEEEEEEeeCCe------eEEEEEEeCCCCCcccccceEeECCe-eeCCHHHH
Q psy1815 16 DHLTVTWKVADDL------YQHIDVREEGKENSFSLGRSLWIGTE-EFEDLDEI 62 (238)
Q Consensus 16 dhLtvTwKv~d~v------yqHidI~E~~K~n~~sLG~~L~Ig~e-efeDLDEI 62 (238)
+.+..++++.+-+ ||+|.|.|... .|+.|.++|. ...+.||.
T Consensus 12 ~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~-----~g~~l~lDg~~q~~~~de~ 60 (283)
T PRK00811 12 DNYGQSFRVKKVLYEEKSPFQRIEIFETPE-----FGRLLALDGCVMTTERDEF 60 (283)
T ss_pred CccceEEeeccEEEEcCCCCeeEEEEEcCC-----ccEEEEECCeeeecCcchh
Confidence 3456667766544 69999999764 4899999995 66777885
Done!