Your job contains 1 sequence.
>psy1815
MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLD
EIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYP
GKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIPGAGVAVGPG
GQTPYGGARQTPGGGHLPYHTPGMTPHHRGMPTPLGHHSSNMGGPVLMHPPTGTPTPH
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1815
(238 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0028982 - symbol:Spt6 "Spt6" species:7227 "Drosoph... 634 1.4e-60 1
UNIPROTKB|E1C1S5 - symbol:Gga.31080 "Uncharacterized prot... 603 2.3e-57 1
UNIPROTKB|E1BEB8 - symbol:SUPT6H "Uncharacterized protein... 601 4.1e-57 1
UNIPROTKB|F1RNB0 - symbol:F1RNB0 "Uncharacterized protein... 600 5.3e-57 1
UNIPROTKB|E2R4A3 - symbol:SUPT6H "Uncharacterized protein... 600 5.3e-57 1
UNIPROTKB|Q7KZ85 - symbol:SUPT6H "Transcription elongatio... 600 5.3e-57 1
UNIPROTKB|F1LR36 - symbol:Supt6h "Protein Supt6h" species... 600 5.3e-57 1
ZFIN|ZDB-GENE-030131-7949 - symbol:supt6h "suppressor of ... 583 3.2e-56 2
MGI|MGI:107726 - symbol:Supt6 "suppressor of Ty 6" specie... 591 4.8e-56 1
TAIR|locus:2206330 - symbol:GTB1 "global transcription fa... 367 3.3e-32 1
WB|WBGene00001259 - symbol:emb-5 species:6239 "Caenorhabd... 337 4.6e-29 1
TAIR|locus:2015198 - symbol:AT1G63210 species:3702 "Arabi... 326 4.8e-28 1
DICTYBASE|DDB_G0272354 - symbol:spt6 "SH2 domain-containi... 316 9.6e-27 1
ASPGD|ASPL0000037137 - symbol:AN3423 species:162425 "Emer... 292 2.6e-24 1
UNIPROTKB|G4NEB7 - symbol:MGG_11491 "Transcription elonga... 288 6.8e-24 1
POMBASE|SPAC1F7.01c - symbol:spt6 "nucleosome remodeling ... 254 2.7e-20 1
SGD|S000003348 - symbol:SPT6 "Nucleosome remodeling prote... 246 2.1e-19 1
CGD|CAL0002923 - symbol:SPT6 species:5476 "Candida albica... 200 1.6e-14 1
UNIPROTKB|Q3MNT0 - symbol:SPT6 "Transcription elongation ... 200 1.6e-14 1
>FB|FBgn0028982 [details] [associations]
symbol:Spt6 "Spt6" species:7227 "Drosophila melanogaster"
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IEP] [GO:0035327
"transcriptionally active chromatin" evidence=IDA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IDA] [GO:0008023
"transcription elongation factor complex" evidence=IPI] [GO:0035101
"FACT complex" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IMP] [GO:0002805 "regulation
of antimicrobial peptide biosynthetic process" evidence=IMP]
[GO:0035363 "histone locus body" evidence=IDA] InterPro:IPR000980
InterPro:IPR003029 InterPro:IPR006641 InterPro:IPR017072
Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001 PROSITE:PS50126
SMART:SM00252 SMART:SM00732 EMBL:AE014298 GO:GO:0003682
GO:GO:0003723 GO:GO:0006366 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0035327 GO:GO:0002805
GO:GO:0032968 GO:GO:0008023 GO:GO:0005703 GO:GO:0005705
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
GeneTree:ENSGT00510000047446 KO:K11292 OMA:EADWIYR
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 PANTHER:PTHR10145 EMBL:AF104400 EMBL:AF104401
EMBL:AY052030 RefSeq:NP_651962.2 UniGene:Dm.7373
ProteinModelPortal:Q9W420 SMR:Q9W420 STRING:Q9W420 PaxDb:Q9W420
PRIDE:Q9W420 EnsemblMetazoa:FBtr0070896 GeneID:44000
KEGG:dme:Dmel_CG12225 CTD:44000 FlyBase:FBgn0028982
InParanoid:Q9W420 OrthoDB:EOG4PRR5K PhylomeDB:Q9W420
GenomeRNAi:44000 NextBio:836551 Bgee:Q9W420 GermOnline:CG12225
GO:GO:0035363 Uniprot:Q9W420
Length = 1831
Score = 634 (228.2 bits), Expect = 1.4e-60, P = 1.4e-60
Identities = 132/236 (55%), Positives = 156/236 (66%)
Query: 2 DQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDE 61
DQGEV +RPSSK DHLT TWKVADD++QHIDVREEGKEN FSLGRSLWIGTEEFEDLDE
Sbjct: 1356 DQGEVALRPSSKSKDHLTATWKVADDIFQHIDVREEGKENDFSLGRSLWIGTEEFEDLDE 1415
Query: 62 IIARHVSPMAANVRELLSFRYYREEC--G--GMRDKAEEVLRQEKRNNPNKIHYFVSLSK 117
IIARH+ PMA REL+ ++YY+ G RD E++LR+EK N+P KIHYF + S+
Sbjct: 1416 IIARHIMPMALAARELIQYKYYKPNMVTGDENERDVMEKLLREEKANDPKKIHYFFTASR 1475
Query: 118 NYPGKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIXXXXXXX 177
PGKFLLSYLP ++ RHE+++V PEG+RFRGQ FD+VNSL RWFKEH+ DP
Sbjct: 1476 AMPGKFLLSYLPKTKVRHEYVTVMPEGYRFRGQIFDTVNSLLRWFKEHWLDPTATPASAS 1535
Query: 178 XXXXQTPY---------GGARQTPGGGHLPYHTPGMTPHHRGMPTPLGHHSSNMGG 224
TP + QT G PY G G TP SS +GG
Sbjct: 1536 ASNL-TPLHLMRPPPTISSSSQTSLGPQAPYSVTGSVTG--G--TPRSGISSAVGG 1586
>UNIPROTKB|E1C1S5 [details] [associations]
symbol:Gga.31080 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] Pfam:PF00017
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 Gene3D:3.30.505.10
GO:GO:0006139 GO:GO:0006357 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0032784 Gene3D:3.30.420.140
GeneTree:ENSGT00510000047446 OMA:EADWIYR Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 EMBL:AADN02025866 EMBL:AADN02025867
IPI:IPI00583816 Ensembl:ENSGALT00000000200 Uniprot:E1C1S5
Length = 1659
Score = 603 (217.3 bits), Expect = 2.3e-57, P = 2.3e-57
Identities = 111/197 (56%), Positives = 144/197 (73%)
Query: 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLD 60
MDQG+VI+RPSSKG +HLTVTWKV D +YQH+DVREEGKEN+FSLG +LWI TEEFEDLD
Sbjct: 1283 MDQGDVIIRPSSKGENHLTVTWKVNDGIYQHVDVREEGKENAFSLGSTLWINTEEFEDLD 1342
Query: 61 EIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYP 120
EI+AR+V PMA+ R+LL+ +YY++ GG + K EE+L + K+ P I YF+S K+ P
Sbjct: 1343 EIVARYVQPMASFARDLLNHKYYQDCNGGDKKKLEELLIKTKKEKPTFIPYFISACKDLP 1402
Query: 121 GKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIXXXXXXXXXX 180
GKFLL Y P + R E+++VTPEGFR+RGQ F +VN LFRWFK+H++DP+
Sbjct: 1403 GKFLLGYQPRGKPRIEYVTVTPEGFRYRGQVFPTVNGLFRWFKDHYQDPVPGITPSSSSR 1462
Query: 181 XQTPYGGARQTPGGGHL 197
+TP TP +L
Sbjct: 1463 TRTP-ASINATPANINL 1478
>UNIPROTKB|E1BEB8 [details] [associations]
symbol:SUPT6H "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0032784 "regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] Pfam:PF00017
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 Gene3D:3.30.505.10
GO:GO:0006139 GO:GO:0006357 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0032784 Gene3D:3.30.420.140
GeneTree:ENSGT00510000047446 KO:K11292 OMA:EADWIYR
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 PANTHER:PTHR10145 CTD:6830 EMBL:DAAA02048604
IPI:IPI00703031 RefSeq:NP_001180055.1 UniGene:Bt.8439
ProteinModelPortal:E1BEB8 PRIDE:E1BEB8 Ensembl:ENSBTAT00000011900
GeneID:538671 KEGG:bta:538671 NextBio:20877509 Uniprot:E1BEB8
Length = 1726
Score = 601 (216.6 bits), Expect = 4.1e-57, P = 4.1e-57
Identities = 110/197 (55%), Positives = 143/197 (72%)
Query: 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLD 60
MDQG+VI+RPSSKG +HLTVTWKV+D +YQH+DVREEGKEN+FSLG +LWI +EEFEDLD
Sbjct: 1350 MDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLD 1409
Query: 61 EIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYP 120
EI+AR+V PMA+ R+LL+ +YY++ GG R K EE+L + K+ P I YF+ K P
Sbjct: 1410 EIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELP 1469
Query: 121 GKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIXXXXXXXXXX 180
GKFLL Y P + R E+++VTPEGFR+RGQ F +VN LFRWFK+H++DP+
Sbjct: 1470 GKFLLGYQPRGKPRIEYVTVTPEGFRYRGQVFPTVNGLFRWFKDHYQDPVPGITPSSSSR 1529
Query: 181 XQTPYGGARQTPGGGHL 197
+TP TP +L
Sbjct: 1530 TRTP-ASINATPANINL 1545
>UNIPROTKB|F1RNB0 [details] [associations]
symbol:F1RNB0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032784 "regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] Pfam:PF00017
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 Gene3D:3.30.505.10
GO:GO:0006139 GO:GO:0006357 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0032784 Gene3D:3.30.420.140
GeneTree:ENSGT00510000047446 OMA:EADWIYR Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 EMBL:FP312642 EMBL:FP016171
Ensembl:ENSSSCT00000019345 Uniprot:F1RNB0
Length = 1725
Score = 600 (216.3 bits), Expect = 5.3e-57, P = 5.3e-57
Identities = 110/197 (55%), Positives = 143/197 (72%)
Query: 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLD 60
MDQG+VI+RPSSKG +HLTVTWKV+D +YQH+DVREEGKEN+FSLG +LWI +EEFEDLD
Sbjct: 1349 MDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLD 1408
Query: 61 EIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYP 120
EI+AR+V PMA+ R+LL+ +YY++ GG R K EE+L + K+ P I YF+ K P
Sbjct: 1409 EIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELP 1468
Query: 121 GKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIXXXXXXXXXX 180
GKFLL Y P + R E+++VTPEGFR+RGQ F +VN LFRWFK+H++DP+
Sbjct: 1469 GKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSSSR 1528
Query: 181 XQTPYGGARQTPGGGHL 197
+TP TP +L
Sbjct: 1529 TRTP-ASINATPANINL 1544
>UNIPROTKB|E2R4A3 [details] [associations]
symbol:SUPT6H "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0016788 "hydrolase
activity, acting on ester bonds" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
Pfam:PF00017 InterPro:IPR000980 InterPro:IPR003029
InterPro:IPR006641 InterPro:IPR017072 Pfam:PF00575
PIRSF:PIRSF036947 PROSITE:PS50001 PROSITE:PS50126 SMART:SM00252
SMART:SM00732 Gene3D:3.30.505.10 GO:GO:0006139 GO:GO:0006357
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0032784
Gene3D:3.30.420.140 GeneTree:ENSGT00510000047446 KO:K11292
OMA:EADWIYR Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 PANTHER:PTHR10145 CTD:6830
EMBL:AAEX03006666 RefSeq:XP_537747.2 ProteinModelPortal:E2R4A3
Ensembl:ENSCAFT00000029797 GeneID:480627 KEGG:cfa:480627
NextBio:20855619 Uniprot:E2R4A3
Length = 1726
Score = 600 (216.3 bits), Expect = 5.3e-57, P = 5.3e-57
Identities = 110/197 (55%), Positives = 143/197 (72%)
Query: 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLD 60
MDQG+VI+RPSSKG +HLTVTWKV+D +YQH+DVREEGKEN+FSLG +LWI +EEFEDLD
Sbjct: 1350 MDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLD 1409
Query: 61 EIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYP 120
EI+AR+V PMA+ R+LL+ +YY++ GG R K EE+L + K+ P I YF+ K P
Sbjct: 1410 EIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELP 1469
Query: 121 GKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIXXXXXXXXXX 180
GKFLL Y P + R E+++VTPEGFR+RGQ F +VN LFRWFK+H++DP+
Sbjct: 1470 GKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSSSR 1529
Query: 181 XQTPYGGARQTPGGGHL 197
+TP TP +L
Sbjct: 1530 TRTP-ASINATPANINL 1545
>UNIPROTKB|Q7KZ85 [details] [associations]
symbol:SUPT6H "Transcription elongation factor SPT6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=TAS] Pfam:PF00017
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 GO:GO:0005634
GO:GO:0019048 Gene3D:3.30.505.10 GO:GO:0003700 GO:GO:0006357
GO:GO:0006351 GO:GO:0003723 GO:GO:0006338 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CH471159
InterPro:IPR022967 SMART:SM00316 GO:GO:0032784 Gene3D:3.30.420.140
eggNOG:COG2183 KO:K11292 OMA:EADWIYR Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 CTD:6830 HOVERGEN:HBG093994 EMBL:U38623
EMBL:U38658 EMBL:U46691 EMBL:D79984 EMBL:BC003692 EMBL:BC003696
EMBL:BC017105 EMBL:BC033074 EMBL:BC073963 EMBL:BC136522
EMBL:BC136524 EMBL:BC150268 EMBL:AF070532 IPI:IPI00430770
IPI:IPI00456683 IPI:IPI00784161 RefSeq:NP_003161.2
UniGene:Hs.250429 ProteinModelPortal:Q7KZ85 SMR:Q7KZ85
DIP:DIP-42615N IntAct:Q7KZ85 MINT:MINT-1491202 STRING:Q7KZ85
PhosphoSite:Q7KZ85 DMDM:51701986 PaxDb:Q7KZ85 PeptideAtlas:Q7KZ85
PRIDE:Q7KZ85 Ensembl:ENST00000314616 Ensembl:ENST00000347486
GeneID:6830 KEGG:hsa:6830 UCSC:uc002hby.3 GeneCards:GC17P026989
HGNC:HGNC:11470 HPA:CAB012416 MIM:601333 neXtProt:NX_Q7KZ85
PharmGKB:PA36256 InParanoid:Q7KZ85 ChiTaRS:SUPT6H GenomeRNAi:6830
NextBio:26667 PMAP-CutDB:Q7KZ85 Bgee:Q7KZ85 Genevestigator:Q7KZ85
GermOnline:ENSG00000109111 Uniprot:Q7KZ85
Length = 1726
Score = 600 (216.3 bits), Expect = 5.3e-57, P = 5.3e-57
Identities = 110/197 (55%), Positives = 143/197 (72%)
Query: 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLD 60
MDQG+VI+RPSSKG +HLTVTWKV+D +YQH+DVREEGKEN+FSLG +LWI +EEFEDLD
Sbjct: 1350 MDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLD 1409
Query: 61 EIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYP 120
EI+AR+V PMA+ R+LL+ +YY++ GG R K EE+L + K+ P I YF+ K P
Sbjct: 1410 EIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELP 1469
Query: 121 GKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIXXXXXXXXXX 180
GKFLL Y P + R E+++VTPEGFR+RGQ F +VN LFRWFK+H++DP+
Sbjct: 1470 GKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSSSR 1529
Query: 181 XQTPYGGARQTPGGGHL 197
+TP TP +L
Sbjct: 1530 TRTP-ASINATPANINL 1545
>UNIPROTKB|F1LR36 [details] [associations]
symbol:Supt6h "Protein Supt6h" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] Pfam:PF00017
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 Gene3D:3.30.505.10
GO:GO:0006139 GO:GO:0006357 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0032784 Gene3D:3.30.420.140
GeneTree:ENSGT00510000047446 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 IPI:IPI00364864 PRIDE:F1LR36
Ensembl:ENSRNOT00000016759 RGD:1309290 ArrayExpress:F1LR36
Uniprot:F1LR36
Length = 1726
Score = 600 (216.3 bits), Expect = 5.3e-57, P = 5.3e-57
Identities = 110/197 (55%), Positives = 143/197 (72%)
Query: 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLD 60
MDQG+VI+RPSSKG +HLTVTWKV+D +YQH+DVREEGKEN+FSLG +LWI +EEFEDLD
Sbjct: 1350 MDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLD 1409
Query: 61 EIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYP 120
EI+AR+V PMA+ R+LL+ +YY++ GG R K EE+L + K+ P I YF+ K P
Sbjct: 1410 EIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELP 1469
Query: 121 GKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIXXXXXXXXXX 180
GKFLL Y P + R E+++VTPEGFR+RGQ F +VN LFRWFK+H++DP+
Sbjct: 1470 GKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSSSR 1529
Query: 181 XQTPYGGARQTPGGGHL 197
+TP TP +L
Sbjct: 1530 TRTP-ASINATPANINL 1545
>ZFIN|ZDB-GENE-030131-7949 [details] [associations]
symbol:supt6h "suppressor of Ty 6 homolog"
species:7955 "Danio rerio" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016788 "hydrolase
activity, acting on ester bonds" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0071599 "otic vesicle development" evidence=IMP] [GO:0035050
"embryonic heart tube development" evidence=IMP] [GO:0001756
"somitogenesis" evidence=IMP] [GO:0007507 "heart development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
Pfam:PF00017 InterPro:IPR000980 InterPro:IPR003029
InterPro:IPR006641 InterPro:IPR017072 Pfam:PF00575
PIRSF:PIRSF036947 PROSITE:PS50001 PROSITE:PS50126 SMART:SM00252
SMART:SM00732 ZFIN:ZDB-GENE-030131-7949 GO:GO:0005634 GO:GO:0006357
GO:GO:0006351 GO:GO:0003723 GO:GO:0001756 GO:GO:0016788
GO:GO:0071599 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0035050 GO:GO:0032784
Gene3D:3.30.420.140 eggNOG:COG2183 GeneTree:ENSGT00510000047446
HOGENOM:HOG000001562 KO:K11292 OMA:EADWIYR Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 EMBL:AF421378 EMBL:BC063248 EMBL:BC097046
IPI:IPI00504681 RefSeq:NP_660094.1 UniGene:Dr.81053
ProteinModelPortal:Q8UVK2 STRING:Q8UVK2 Ensembl:ENSDART00000028007
GeneID:337866 KEGG:dre:337866 CTD:6830 HOVERGEN:HBG093994
InParanoid:Q8UVK2 OrthoDB:EOG44F687 NextBio:20812449 Bgee:Q8UVK2
InterPro:IPR018974 Pfam:PF09371 Uniprot:Q8UVK2
Length = 1726
Score = 583 (210.3 bits), Expect = 3.2e-56, Sum P(2) = 3.2e-56
Identities = 103/170 (60%), Positives = 134/170 (78%)
Query: 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLD 60
MDQG+V++RPSSKG +HLTVTWKVAD +YQH+DVREEGKEN+FSLG +LWI TEEFEDLD
Sbjct: 1341 MDQGDVVIRPSSKGENHLTVTWKVADGIYQHVDVREEGKENAFSLGHTLWINTEEFEDLD 1400
Query: 61 EIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYP 120
EI AR+V PMAA R+LL +Y+ E GG R K EE+L + K+ P I Y++S ++ P
Sbjct: 1401 EITARYVQPMAAFARDLLGHKYFHECNGGDRKKMEELLVRTKKEKPTFIPYYISACRDLP 1460
Query: 121 GKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPI 170
GKFLL Y P + R E++++TP+GFR+R Q F +VN LFRWFK+H++DP+
Sbjct: 1461 GKFLLGYQPRGKPRIEYVTITPDGFRYRSQIFPTVNGLFRWFKDHYQDPV 1510
Score = 41 (19.5 bits), Expect = 3.2e-56, Sum P(2) = 3.2e-56
Identities = 19/63 (30%), Positives = 20/63 (31%)
Query: 182 QTPYGGARQTPGGGHLPYHTPG----MTPHHRGMPTPL---GHHSSNMGGPVLMHPPTGT 234
Q P TP Y TPG MT TP GHH + P T
Sbjct: 1604 QQPMATPLMTPS---YSYTTPGQQQAMTTPQYPSSTPQSSHGHHQHSSSTPSSSSSRVRT 1660
Query: 235 PTP 237
P P
Sbjct: 1661 PQP 1663
>MGI|MGI:107726 [details] [associations]
symbol:Supt6 "suppressor of Ty 6" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016788 "hydrolase activity, acting on ester bonds"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] Pfam:PF00017
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 MGI:MGI:107726
GO:GO:0005634 Gene3D:3.30.505.10 GO:GO:0006357 GO:GO:0006351
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0032784
EMBL:AL591070 Gene3D:3.30.420.140 UniGene:Mm.20755 eggNOG:COG2183
GeneTree:ENSGT00510000047446 HOGENOM:HOG000001562 KO:K11292
OMA:EADWIYR Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 PANTHER:PTHR10145
HOVERGEN:HBG093994 OrthoDB:EOG44F687 ChiTaRS:SUPT6H EMBL:U40375
EMBL:BC072657 EMBL:AK129069 EMBL:AK046156 IPI:IPI00454050
PIR:T30810 RefSeq:NP_033323.2 ProteinModelPortal:Q62383 SMR:Q62383
IntAct:Q62383 STRING:Q62383 PhosphoSite:Q62383 PaxDb:Q62383
PRIDE:Q62383 Ensembl:ENSMUST00000002121 GeneID:20926 KEGG:mmu:20926
UCSC:uc007kip.2 CTD:20926 InParanoid:Q62383 NextBio:299837
Bgee:Q62383 CleanEx:MM_SUPT6H Genevestigator:Q62383
GermOnline:ENSMUSG00000002052 Uniprot:Q62383
Length = 1726
Score = 591 (213.1 bits), Expect = 4.8e-56, P = 4.8e-56
Identities = 109/197 (55%), Positives = 142/197 (72%)
Query: 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLD 60
MDQG+VI+RPSSKG +HLTVTWKV+ +YQH+DVREEGKEN+FSLG +LWI +EEFEDLD
Sbjct: 1350 MDQGDVIIRPSSKGENHLTVTWKVSAGIYQHVDVREEGKENAFSLGATLWINSEEFEDLD 1409
Query: 61 EIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYP 120
EI+AR+V PMA+ R+LL+ +YY++ GG R K EE+L + K+ P I YF+ K P
Sbjct: 1410 EIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELP 1469
Query: 121 GKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIXXXXXXXXXX 180
GKFLL Y P + R E+++VTPEGFR+RGQ F +VN LFRWFK+H++DP+
Sbjct: 1470 GKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSSNR 1529
Query: 181 XQTPYGGARQTPGGGHL 197
+TP TP +L
Sbjct: 1530 TRTP-ASINATPANINL 1545
>TAIR|locus:2206330 [details] [associations]
symbol:GTB1 "global transcription factor group B1"
species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0009630
"gravitropism" evidence=RCA] InterPro:IPR000980 InterPro:IPR003029
InterPro:IPR006641 InterPro:IPR017072 PIRSF:PIRSF036947
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 EMBL:CP002684
GO:GO:0005829 GO:GO:0009506 GO:GO:0006139 GO:GO:0006357
GO:GO:0003746 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 EMBL:AC010795
GO:GO:0032784 Gene3D:3.30.420.140 eggNOG:COG2183 KO:K11292
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 PANTHER:PTHR10145 OMA:YRKFRKG IPI:IPI00846769
RefSeq:NP_176723.3 UniGene:At.20510 ProteinModelPortal:A8MS85
SMR:A8MS85 PaxDb:A8MS85 PRIDE:A8MS85 EnsemblPlants:AT1G65440.1
GeneID:842855 KEGG:ath:AT1G65440 TAIR:At1g65440
HOGENOM:HOG000241511 InParanoid:A8MS85 PhylomeDB:A8MS85
ProtClustDB:CLSN2682387 Genevestigator:A8MS85 Uniprot:A8MS85
Length = 1647
Score = 367 (134.2 bits), Expect = 3.3e-32, P = 3.3e-32
Identities = 70/174 (40%), Positives = 117/174 (67%)
Query: 2 DQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENS--FSL---GRSLWIGTEEF 56
D GE IVRPSS+G + LT+T K+ D +Y H ++ E GKEN SL G++L IG + F
Sbjct: 1244 DFGESIVRPSSRGLNFLTLTLKIYDGVYAHKEIAEGGKENKDITSLQCIGKTLTIGEDTF 1303
Query: 57 EDLDEIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLS 116
EDLDE++ R+V P+ ++++ +L++R +R+ G + + +++LR EK NP++I Y +S
Sbjct: 1304 EDLDEVMDRYVDPLVSHLKTMLNYRKFRK---GTKSEVDDLLRIEKGENPSRIVYCFGIS 1360
Query: 117 KNYPGKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPI 170
+PG F+LSY+ ++ HE+I + P+GF+FR + F+ ++ L +F+ H DP+
Sbjct: 1361 HEHPGTFILSYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPL 1414
>WB|WBGene00001259 [details] [associations]
symbol:emb-5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0016788 "hydrolase activity, acting on ester bonds"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR000980 InterPro:IPR003029
InterPro:IPR006641 InterPro:IPR017072 Pfam:PF00575
PIRSF:PIRSF036947 PROSITE:PS50001 PROSITE:PS50126 SMART:SM00252
SMART:SM00732 EMBL:Z35663 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006357 GO:GO:0006351 GO:GO:0003723
GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0032784 Gene3D:3.30.420.140
EMBL:D14635 EMBL:Z35719 PIR:S35241 RefSeq:NP_497969.1
ProteinModelPortal:P34703 SMR:P34703 STRING:P34703 PaxDb:P34703
EnsemblMetazoa:T04A8.14 GeneID:175621 KEGG:cel:CELE_T04A8.14
UCSC:T04A8.14 CTD:175621 WormBase:T04A8.14 eggNOG:COG2183
GeneTree:ENSGT00510000047446 HOGENOM:HOG000001562 InParanoid:P34703
KO:K11292 OMA:EADWIYR NextBio:888936 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 Uniprot:P34703
Length = 1521
Score = 337 (123.7 bits), Expect = 4.6e-29, P = 4.6e-29
Identities = 74/210 (35%), Positives = 106/210 (50%)
Query: 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLD 60
MD E I+RPS+ L+VTWK+ D +Y + V+E K+ FS+GR L +G E+FEDLD
Sbjct: 1318 MDWSECIIRPSANKDSGLSVTWKICDRVYHNFFVKESAKDQVFSIGRQLSVGGEDFEDLD 1377
Query: 61 EIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYP 120
E+IAR V PM E+ + +Y+ +A E +EK+ + Y S S P
Sbjct: 1378 ELIARFVQPMIQISHEITTHKYFFPNGTCEETEAVEQFVREKKRELGRSPYVFSASYRQP 1437
Query: 121 GKFLLSYL--PASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIXXXXXXXX 178
+F +SY+ R RHE+ + P G RFR Q FD+++ + WFK HF +P
Sbjct: 1438 CQFCISYMFDNTERIRHEYFKIVPHGVRFRHQNFDTLDRMMAWFKRHFHEPPIELRRSAI 1497
Query: 179 XXXQTPYGGARQTPGGGHLPYHTPGMTPHH 208
Q G P PY+ P +H
Sbjct: 1498 PAPQYRVGAP---PAA---PYYPPQFVGYH 1521
>TAIR|locus:2015198 [details] [associations]
symbol:AT1G63210 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0009790 "embryo development" evidence=IMP]
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 PIRSF:PIRSF036947 PROSITE:PS50126 SMART:SM00252
SMART:SM00732 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006139
GO:GO:0006357 GO:GO:0009790 GO:GO:0003746 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 EMBL:AC010795 GO:GO:0032784
Gene3D:3.30.420.140 eggNOG:COG2183 KO:K11292 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 HOGENOM:HOG000241511 ProtClustDB:CLSN2682387
IPI:IPI00542270 RefSeq:NP_176510.1 UniGene:At.52337
ProteinModelPortal:Q9CAM1 SMR:Q9CAM1 PaxDb:Q9CAM1 PRIDE:Q9CAM1
EnsemblPlants:AT1G63210.1 GeneID:842626 KEGG:ath:AT1G63210
TAIR:At1g63210 InParanoid:Q9CAM1 OMA:ISECSEH PhylomeDB:Q9CAM1
Genevestigator:Q9CAM1 Uniprot:Q9CAM1
Length = 1197
Score = 326 (119.8 bits), Expect = 4.8e-28, P = 4.8e-28
Identities = 66/167 (39%), Positives = 107/167 (64%)
Query: 4 GEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENS--FSL---GRSLWIGTEEFED 58
GE IVRPSS+G +HLT+ K++D++Y + ++ E KEN SL G++L IG E FED
Sbjct: 1030 GESIVRPSSRGLNHLTLMIKISDNVYANKEIIEGEKENKDIVSLQRIGKTLKIGNETFED 1089
Query: 59 LDEIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKN 118
LDE++ R+V P+ ++ +L+ R +R G + + +++LR EK NP + Y +S
Sbjct: 1090 LDEVMDRYVDPLVTHLMTMLNHRKFRT---GTKSEIDDLLRVEKGVNPKMVVYSFGVSHE 1146
Query: 119 YPGKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEH 165
+PG F+LSY+ ++ HE+I + P+GF+FR + F ++ L +FK H
Sbjct: 1147 HPGSFILSYIRSANPHHEYIGLYPKGFKFRKRMFGDLDKLAAYFKRH 1193
>DICTYBASE|DDB_G0272354 [details] [associations]
symbol:spt6 "SH2 domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=ISS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006334 "nucleosome assembly"
evidence=ISS] [GO:0006325 "chromatin organization" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR000959
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 PIRSF:PIRSF036947 PROSITE:PS50078
PROSITE:PS50126 SMART:SM00252 dictyBase:DDB_G0272354 GO:GO:0006355
GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0006352 GO:GO:0006357
GO:GO:0003723 EMBL:AAFI02000008 GO:GO:0016788 GO:GO:0006368
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006334
GO:GO:0008023 InterPro:IPR022967 SMART:SM00316 GO:GO:0032784
Gene3D:3.30.420.140 eggNOG:COG2183 KO:K11292 OMA:EADWIYR
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 PANTHER:PTHR10145 RefSeq:XP_645136.1
ProteinModelPortal:Q55A48 EnsemblProtists:DDB0231554 GeneID:8618306
KEGG:ddi:DDB_G0272354 InParanoid:Q55A48 ProtClustDB:CLSZ2729239
Uniprot:Q55A48
Length = 1754
Score = 316 (116.3 bits), Expect = 9.6e-27, P = 9.6e-27
Identities = 59/163 (36%), Positives = 103/163 (63%)
Query: 4 GEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEII 63
G+V++RPSSKG DH+T T+K AD ++ H D++E K N+ SLG+S ++G +++ LDEI+
Sbjct: 1305 GDVLLRPSSKGHDHITATFKFADSIFLHHDIKEADKPNAVSLGKSFYMGDVKYDSLDEIL 1364
Query: 64 ARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKF 123
ARHV + N+ E+ S + ++ G R ++++R+EK+ NP I Y+ +PG
Sbjct: 1365 ARHVEYLINNLNEVKSNTAHWKD--GNRSDVDDLIREEKKKNPKTIPYYFGYDFEHPGFL 1422
Query: 124 LLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHF 166
L ++P++ RHE + V +GF R + + + L ++FK ++
Sbjct: 1423 TLYHVPSNTPRHEPVLVKADGFILRKKLYPTYYELIKYFKRNY 1465
>ASPGD|ASPL0000037137 [details] [associations]
symbol:AN3423 species:162425 "Emericella nidulans"
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031618 "nuclear
centromeric heterochromatin" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0030466 "chromatin silencing
at silent mating-type cassette" evidence=IEA] [GO:0060147
"regulation of posttranscriptional gene silencing" evidence=IEA]
[GO:0031454 "regulation of extent of heterochromatin assembly"
evidence=IEA] [GO:0044382 "CLRC ubiquitin ligase complex
localization to heterochromatin" evidence=IEA] [GO:0071441
"negative regulation of histone H3-K14 acetylation" evidence=IEA]
[GO:0006348 "chromatin silencing at telomere" evidence=IEA]
[GO:0030702 "chromatin silencing at centromere" evidence=IEA]
[GO:1900111 "positive regulation of histone H3-K9 dimethylation"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:1900114 "positive regulation of histone H3-K9
trimethylation" evidence=IEA] InterPro:IPR000980 InterPro:IPR006641
InterPro:IPR017072 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 GO:GO:0005634 EMBL:BN001306
GO:GO:0006357 GO:GO:0006351 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0032784 Gene3D:3.30.420.140 eggNOG:COG2183 KO:K11292
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 PANTHER:PTHR10145 EMBL:AACD01000056
RefSeq:XP_661027.1 STRING:Q5B7Q7 GeneID:2874464 KEGG:ani:AN3423.2
HOGENOM:HOG000193710 OMA:YRKFRKG OrthoDB:EOG47DDQ9 Uniprot:Q5B7Q7
Length = 1417
Score = 292 (107.8 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 61/164 (37%), Positives = 93/164 (56%)
Query: 3 QGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTE-EFEDLDE 61
+G+V++RPSSKG DHL VTWKVAD ++QHIDV E KEN FS+GR+L +G + DLD+
Sbjct: 1245 RGDVVIRPSSKGPDHLAVTWKVADGIFQHIDVLELDKENEFSVGRTLKVGGRFTYSDLDD 1304
Query: 62 IIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPG 121
+I HV MA V E++ Y+E G +D + L + NP + Y + + G
Sbjct: 1305 LIFNHVKAMAKKVDEMMLHEKYQE---GSKDSTYQWLETYTKANPRRSAYAFCIDPKHAG 1361
Query: 122 KFLLSYLPASRSR-HEF-ISVTPEGFRFRGQQFDSVNSLFRWFK 163
F L + ++ H + + V P+G+ + + + +L FK
Sbjct: 1362 YFFLCFKAGEHAQVHSWPVKVIPQGYELQRNPYPDMRALCNGFK 1405
>UNIPROTKB|G4NEB7 [details] [associations]
symbol:MGG_11491 "Transcription elongation factor SPT6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] Pfam:PF00017 InterPro:IPR000980
InterPro:IPR003029 InterPro:IPR006641 InterPro:IPR017072
Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001 PROSITE:PS50126
SMART:SM00252 Gene3D:3.30.505.10 EMBL:CM001235 GO:GO:0006139
GO:GO:0006357 GO:GO:0003746 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0032784 Gene3D:3.30.420.140 KO:K11292 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 RefSeq:XP_003718184.1 ProteinModelPortal:G4NEB7
EnsemblFungi:MGG_11491T0 GeneID:2675197 KEGG:mgr:MGG_11491
Uniprot:G4NEB7
Length = 1407
Score = 288 (106.4 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 68/171 (39%), Positives = 93/171 (54%)
Query: 4 GEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTE-EFEDLDEI 62
GE+++R SSKG+DHL +TWKVAD + QHIDV E KEN F+LGR+L + + + DLDE+
Sbjct: 1228 GELVIRSSSKGSDHLAITWKVADGVIQHIDVLELDKENEFALGRTLKVANKYTYSDLDEL 1287
Query: 63 IARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGK 122
I HV MA V EL+ +++ G R E L NP + Y L +PG
Sbjct: 1288 IVEHVKAMARKVDELMQSDKFQK---GSRSDLERWLTTYMDANPTRSTYAFCLDTKHPGY 1344
Query: 123 FLLSYLPASRSRHE---FISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPI 170
F+L + ASRS + V P + G Q+ V +L FK F+ I
Sbjct: 1345 FVLCF-KASRSSKIGSWSVRVIPGAYEMMGSQYPDVRALCNGFKLRFQSEI 1394
>POMBASE|SPAC1F7.01c [details] [associations]
symbol:spt6 "nucleosome remodeling protein Spt6"
species:4896 "Schizosaccharomyces pombe" [GO:0000183 "chromatin
silencing at rDNA" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006348 "chromatin silencing at
telomere" evidence=IMP;IDA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016788 "hydrolase activity, acting on ester bonds"
evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IDA] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP;IDA] [GO:0031454 "regulation
of extent of heterochromatin assembly" evidence=IMP] [GO:0031618
"nuclear centromeric heterochromatin" evidence=IDA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0034401 "regulation of transcription by chromatin
organization" evidence=ISO] [GO:0043486 "histone exchange"
evidence=NAS] [GO:0044382 "CLRC ubiquitin ligase complex
localization to heterochromatin" evidence=IMP] [GO:0060147
"regulation of posttranscriptional gene silencing" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:1900111 "positive regulation of histone H3-K9
dimethylation" evidence=IMP] [GO:1900114 "positive regulation of
histone H3-K9 trimethylation" evidence=IMP] [GO:0016584 "nucleosome
positioning" evidence=IMP] Pfam:PF00017 InterPro:IPR000980
InterPro:IPR003029 InterPro:IPR006641 InterPro:IPR017072
Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001 PROSITE:PS50126
SMART:SM00252 SMART:SM00732 PomBase:SPAC1F7.01c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0003723 GO:GO:0030466
GO:GO:0030702 GO:GO:0016788 GO:GO:0000183 GO:GO:0006348
GO:GO:0034401 GO:GO:0043486 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0031618 GO:GO:0071441 InterPro:IPR022967
SMART:SM00316 GO:GO:0032784 GO:GO:0031454 Gene3D:3.30.420.140
eggNOG:COG2183 KO:K11292 OMA:EADWIYR Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 InterPro:IPR018974 Pfam:PF09371
HOGENOM:HOG000193710 OrthoDB:EOG47DDQ9 PIR:T38095 PIR:T50252
RefSeq:NP_594487.2 ProteinModelPortal:Q09915 STRING:Q09915
EnsemblFungi:SPAC1F7.01c.1 GeneID:2541605 KEGG:spo:SPAC1F7.01c
NextBio:20802699 GO:GO:0044382 GO:GO:1900111 GO:GO:1900114
GO:GO:0060147 Uniprot:Q09915
Length = 1365
Score = 254 (94.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 58/171 (33%), Positives = 91/171 (53%)
Query: 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWI-G-----TE 54
M G++++RPSSKG+DH+ VTWKVA+ YQHIDV E KEN F++G+ L + G T
Sbjct: 1185 MQVGDLVIRPSSKGSDHIVVTWKVAEGSYQHIDVLELEKENEFTIGQKLLVKGRFEKMTY 1244
Query: 55 EFEDLDEIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVS 114
++ DLDE+I H+ +A + E+ +R+ G + + E+ L NP + Y
Sbjct: 1245 QYSDLDELIVLHIKAIAKKIDEMCIHDKFRK---GTQAETEKWLESYSEANPKRSCYAFC 1301
Query: 115 LSKNYPGKFLLSYLPASRSRHEF--ISVTPEGFRFRGQQFDSVNSLFRWFK 163
+PG F+L + + S + V P F +G + + +L FK
Sbjct: 1302 FDHQHPGYFILCFKASVNSPVTAWPVKVIPNAFFLQGNVYGDMTALCNGFK 1352
>SGD|S000003348 [details] [associations]
symbol:SPT6 "Nucleosome remodeling protein" species:4932
"Saccharomyces cerevisiae" [GO:0006334 "nucleosome assembly"
evidence=IDA] [GO:0000433 "negative regulation of transcription
from RNA polymerase II promoter by glucose" evidence=IMP]
[GO:0070827 "chromatin maintenance" evidence=IMP] [GO:0000414
"regulation of histone H3-K36 methylation" evidence=IMP;IDA]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=IMP;IPI] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IMP]
[GO:0031491 "nucleosome binding" evidence=IMP;IDA] [GO:0034401
"regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0042393 "histone binding" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IGI;IMP] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IMP] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IMP] [GO:0031564 "transcription antitermination"
evidence=IGI;IMP] [GO:0001073 "DNA binding transcription
antitermination factor activity" evidence=IGI;IMP;IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0071931 "positive regulation of
transcription involved in G1/S phase of mitotic cell cycle"
evidence=IMP] [GO:0060303 "regulation of nucleosome density"
evidence=IMP] [GO:0034728 "nucleosome organization" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035327
"transcriptionally active chromatin" evidence=IDA] [GO:0031440
"regulation of mRNA 3'-end processing" evidence=IGI;IMP]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA]
Pfam:PF00017 InterPro:IPR000980 InterPro:IPR006641
InterPro:IPR017072 PIRSF:PIRSF036947 PROSITE:PS50001 SMART:SM00252
SMART:SM00732 SGD:S000003348 GO:GO:0005739 GO:GO:0005634
EMBL:BK006941 Gene3D:3.30.505.10 GO:GO:0006338 GO:GO:0016788
GO:GO:0034401 GO:GO:0042393 GO:GO:0001073 GO:GO:0031491
GO:GO:0000991 GO:GO:0006334 GO:GO:0043618 GO:GO:0035327
GO:GO:0071931 GO:GO:0001178 GO:GO:0000433 GO:GO:0016973
GO:GO:0032784 GO:GO:0031440 GO:GO:0060303 PDB:3OAK PDBsum:3OAK
Gene3D:3.30.420.140 eggNOG:COG2183 GeneTree:ENSGT00510000047446
KO:K11292 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 PANTHER:PTHR10145
HOGENOM:HOG000193710 OMA:YRKFRKG OrthoDB:EOG47DDQ9 EMBL:M34391
EMBL:Z72899 EMBL:Z72902 PIR:A36468 RefSeq:NP_011631.1 PDB:2L3T
PDB:3PSF PDB:3PSI PDB:3PSJ PDB:3PSK PDBsum:2L3T PDBsum:3PSF
PDBsum:3PSI PDBsum:3PSJ PDBsum:3PSK ProteinModelPortal:P23615
SMR:P23615 DIP:DIP-2630N IntAct:P23615 MINT:MINT-427185
STRING:P23615 PaxDb:P23615 PeptideAtlas:P23615 EnsemblFungi:YGR116W
GeneID:853011 KEGG:sce:YGR116W CYGD:YGR116w
EvolutionaryTrace:P23615 NextBio:972872 Genevestigator:P23615
GermOnline:YGR116W GO:GO:0070827 GO:GO:0000414 Uniprot:P23615
Length = 1451
Score = 246 (91.7 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 53/164 (32%), Positives = 91/164 (55%)
Query: 2 DQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDE 61
++GE ++R SS+G DHL +TWK+ DL+QHID++E KEN +LG+ L + +++ DLD+
Sbjct: 1275 ERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLALGKVLIVDNQKYNDLDQ 1334
Query: 62 IIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPG 121
II ++ + E+ S ++ G + + + R NPNK Y+ SL+ + PG
Sbjct: 1335 IIVEYLQNKVRLLNEMTSSEKFKS---GTKKDVVKFIEDYSRVNPNKSVYYFSLNHDNPG 1391
Query: 122 KFLLSY-LPASRSRHEF-ISVTPEGFRFRGQQFDSVNSLFRWFK 163
F L + + A+ + + + +T G+ + SV L FK
Sbjct: 1392 WFYLMFKINANSKLYTWNVKLTNTGYFLVNYNYPSVIQLCNGFK 1435
>CGD|CAL0002923 [details] [associations]
symbol:SPT6 species:5476 "Candida albicans" [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IGI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035327 "transcriptionally
active chromatin" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IEA] [GO:0071931
"positive regulation of transcription involved in G1/S phase of
mitotic cell cycle" evidence=IEA] [GO:0034401 "regulation of
transcription by chromatin organization" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0000433 "negative regulation of
transcription from RNA polymerase II promoter by glucose"
evidence=IEA] [GO:0070827 "chromatin maintenance" evidence=IEA]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IEA]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
[GO:0031564 "transcription antitermination" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0000414
"regulation of histone H3-K36 methylation" evidence=IEA]
[GO:0036170 "filamentous growth of a population of unicellular
organisms in response to starvation" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:1900436
"positive regulation of filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=IEA] [GO:0001073 "DNA
binding transcription antitermination factor activity"
evidence=IEA] Pfam:PF00017 InterPro:IPR000980 InterPro:IPR006641
InterPro:IPR017072 PIRSF:PIRSF036947 PROSITE:PS50001 SMART:SM00252
CGD:CAL0002923 GO:GO:0005634 GO:GO:0071216 GO:GO:0036180
GO:GO:1900445 Gene3D:3.30.505.10 GO:GO:0006357 GO:GO:0009267
GO:GO:0016788 GO:GO:0006368 EMBL:AP006852 GO:GO:0036170
GO:GO:1900436 GO:GO:0032784 Gene3D:3.30.420.140 eggNOG:COG2183
KO:K11292 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 PANTHER:PTHR10145
EMBL:AACQ01000089 RefSeq:XP_715187.1 RefSeq:XP_889033.1
ProteinModelPortal:Q3MNT0 STRING:Q3MNT0 GeneID:3643171
GeneID:3704048 KEGG:cal:CaO19.7136 KEGG:cal:CaO19_7136
Uniprot:Q3MNT0
Length = 1401
Score = 200 (75.5 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 51/163 (31%), Positives = 81/163 (49%)
Query: 4 GEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEII 63
G+ ++RPSSKGA +LT+TWKV ++L+QH+ V EE F + + + +EDLD++
Sbjct: 1229 GDYVIRPSSKGASYLTITWKVGNNLFQHLLV-EERSRGRF---KEYIVDGKTYEDLDQLA 1284
Query: 64 ARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKF 123
+H+ +A NV +++ +RE G E L R NP Y PG F
Sbjct: 1285 FQHIQVIAKNVTDMVRHPKFRE---GTLSVVHEWLESYTRANPKSSAYVFCYDHKSPGNF 1341
Query: 124 LLSYLPASRSRHEFISVTPE--GFRFRGQQFDSVNSLFRWFKE 164
LL + ++ V E G+ R + ++ SL FK+
Sbjct: 1342 LLLFKVNVSAKVVTWHVKTEVGGYELRSSVYPNMLSLCNGFKQ 1384
>UNIPROTKB|Q3MNT0 [details] [associations]
symbol:SPT6 "Transcription elongation factor SPT6"
species:237561 "Candida albicans SC5314" [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IGI]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0071216 "cellular response to
biotic stimulus" evidence=IMP] [GO:1900436 "positive regulation of
filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP]
Pfam:PF00017 InterPro:IPR000980 InterPro:IPR006641
InterPro:IPR017072 PIRSF:PIRSF036947 PROSITE:PS50001 SMART:SM00252
CGD:CAL0002923 GO:GO:0005634 GO:GO:0071216 GO:GO:0036180
GO:GO:1900445 Gene3D:3.30.505.10 GO:GO:0006357 GO:GO:0009267
GO:GO:0016788 GO:GO:0006368 EMBL:AP006852 GO:GO:0036170
GO:GO:1900436 GO:GO:0032784 Gene3D:3.30.420.140 eggNOG:COG2183
KO:K11292 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 PANTHER:PTHR10145
EMBL:AACQ01000089 RefSeq:XP_715187.1 RefSeq:XP_889033.1
ProteinModelPortal:Q3MNT0 STRING:Q3MNT0 GeneID:3643171
GeneID:3704048 KEGG:cal:CaO19.7136 KEGG:cal:CaO19_7136
Uniprot:Q3MNT0
Length = 1401
Score = 200 (75.5 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 51/163 (31%), Positives = 81/163 (49%)
Query: 4 GEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEII 63
G+ ++RPSSKGA +LT+TWKV ++L+QH+ V EE F + + + +EDLD++
Sbjct: 1229 GDYVIRPSSKGASYLTITWKVGNNLFQHLLV-EERSRGRF---KEYIVDGKTYEDLDQLA 1284
Query: 64 ARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKF 123
+H+ +A NV +++ +RE G E L R NP Y PG F
Sbjct: 1285 FQHIQVIAKNVTDMVRHPKFRE---GTLSVVHEWLESYTRANPKSSAYVFCYDHKSPGNF 1341
Query: 124 LLSYLPASRSRHEFISVTPE--GFRFRGQQFDSVNSLFRWFKE 164
LL + ++ V E G+ R + ++ SL FK+
Sbjct: 1342 LLLFKVNVSAKVVTWHVKTEVGGYELRSSVYPNMLSLCNGFKQ 1384
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.433 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 238 227 0.00079 113 3 11 22 0.42 33
32 0.41 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 610 (65 KB)
Total size of DFA: 201 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.43u 0.06s 22.49t Elapsed: 00:00:18
Total cpu time: 22.43u 0.06s 22.49t Elapsed: 00:00:19
Start: Thu Aug 15 14:13:51 2013 End: Thu Aug 15 14:14:10 2013