RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1815
(238 letters)
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 279 bits (716), Expect = 2e-87
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 5/175 (2%)
Query: 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLD 60
++GE ++R SS+G DHL +TWK+ DL+QHID++E KEN +LG+ L + +++ DLD
Sbjct: 1042 KERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLALGKVLIVDNQKYNDLD 1101
Query: 61 EIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYP 120
+II ++ + E+ S ++ G + + + R NPNK Y+ SL+ + P
Sbjct: 1102 QIIVEYLQNKVRLLNEMTSSEKFKS---GTKKDVVKFIEDYSRVNPNKSVYYFSLNHDNP 1158
Query: 121 GKFLLSYLPA--SRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIPGA 173
G F L + S+ + +T G+ + SV L FK +
Sbjct: 1159 GWFYLMFKINANSKLYTWNVKLTNTGYFLVNYNYPSVIQLCNGFKTLLKSNSSKN 1213
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 232 bits (592), Expect = 8e-78
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 5/173 (2%)
Query: 1 MDQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLD 60
++G+ ++R SS+G DHL +TWK+ DL+QH+D++E KEN +LG+ L + + + DLD
Sbjct: 26 KERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENPLALGKVLVVEGQRYHDLD 85
Query: 61 EIIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYP 120
+II ++ + EL S ++ G + + + + + NP K Y+ SL+ P
Sbjct: 86 QIIVEYLQNKIRLLNELTSNEKFKA---GTKKEVVKFIEDYSKVNPKKSVYYFSLNYENP 142
Query: 121 GKFLLSYLPA--SRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIP 171
G F L + S+ + +T GF + +V L FK +
Sbjct: 143 GWFYLIFKLNAESKLYIWNVKLTHTGFFLVNYNYPTVIQLCNGFKTLLKSSNT 195
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A
{Antonospora locustae}
Length = 178
Score = 186 bits (473), Expect = 5e-60
Identities = 32/162 (19%), Positives = 68/162 (41%), Gaps = 18/162 (11%)
Query: 2 DQGEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDE 61
+ ++R S+ + + K A D++ H+ + E + + + FED+DE
Sbjct: 32 STDDFLIRKGSRH-GYCVLVIKFASDVFVHMKIEEHSEHYT--------CSNKHFEDIDE 82
Query: 62 IIARHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPG 121
+I+ +V P+ N++ + + Y + E+ + + +K+ Y S+ YPG
Sbjct: 83 VISVYVRPILRNLKSIKAHAKY-------FNSPEDAEKLLSSFDGSKVVYAFYFSRKYPG 135
Query: 122 KFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFK 163
K +Y E+I V + + F ++S + K
Sbjct: 136 KLTFAY-NNGSILEEYIGV-SDMLTYNNSTFKDIDSFVAYRK 175
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 4e-05
Identities = 27/243 (11%), Positives = 63/243 (25%), Gaps = 95/243 (39%)
Query: 21 TWKVADDLYQHIDVREEGKENSFSLGRSLWIGTE----------------EFEDLDEIIA 64
+W + + + + F +IG + + +E +
Sbjct: 288 SW---ESFFVSVR---KAITVLF------FIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 65 RHVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFL 124
SPM + + +++ ++ + + + P +SL N +
Sbjct: 336 ---SPMLS-IS------------NLTQEQVQDYVNKTNSHLPAGKQVEISL-VNGAKNLV 378
Query: 125 LSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIPGAGVAVGPG---G 181
+S P S L+ R G
Sbjct: 379 VSGPPQS--------------------------LYG-LNLTLR------KAKAPSGLDQS 405
Query: 182 QTPYGGARQTPGGGH------LPYHTPGMTPHHRGMPTPLGH-----HSSNMGGPVLMHP 230
+ P+ R+ + P+H+ + P + L ++ ++ PV
Sbjct: 406 RIPFSE-RK-LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY-DT 462
Query: 231 PTG 233
G
Sbjct: 463 FDG 465
Score = 28.1 bits (62), Expect = 3.7
Identities = 25/171 (14%), Positives = 43/171 (25%), Gaps = 71/171 (41%)
Query: 92 DKAEEVLRQEK--------RNNPNKIH-YFV-----SLSKNYPGKFLLSYLPASRSRHE- 136
++A+ + NNP + +F + +NY + + + + E
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS-AMIFETIVDGKLKTEK 1705
Query: 137 -FISVTPE--GFRFRGQ-------QF-------DSVNSLFRWFKEHFRDPIP-------- 171
F + + FR + QF + F K P
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK-AAFEDLKSKGLIPADATFAGHSL 1764
Query: 172 G--------AGV-----AV----------------GPGGQTPYGGARQTPG 193
G A V V G++ YG PG
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Score = 26.6 bits (58), Expect = 9.6
Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 29/107 (27%)
Query: 28 LYQHIDVREEGKENSFSL-----GR-SLWIGTEEFEDLDEIIARH----VSPMAANVREL 77
Q R+E +++ + GR + E + + E + + V N
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI--VN---- 1845
Query: 78 LSFRYYREE-----CGG-MR--DKAEEVLRQEKRNNPNKIHYFVSLS 116
Y E G +R D VL K + I SLS
Sbjct: 1846 -----YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 40.8 bits (96), Expect = 4e-05
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFRGQ 150
R +A+E+L+++ + V S PG+++LS + RH I +RF G
Sbjct: 26 RIEAQELLKKQG-------DFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGT 78
Query: 151 QFDSVNSLFRWFKEHFRDPIPGAGVAV 177
F ++ L + I V
Sbjct: 79 GFSNIPQLIDHHYTT-KQVITKKSGVV 104
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 39.2 bits (92), Expect = 1e-04
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEG-FRFRG 149
R KA +++ + + + V S+ G+ +L++ +++H +S+ G R +
Sbjct: 18 RLKAAQLVLEGGTGSHG--VFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQH 75
Query: 150 QQFDSVNSLFRWFKEHFRDPIP 171
F S+ + F+ H PIP
Sbjct: 76 LHFQSIFDMLEHFRVH---PIP 94
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 37.6 bits (88), Expect = 4e-04
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEG-FRFRG 149
R +AE +L+ + V S PG+++L+ L + + +H + V PEG R +
Sbjct: 16 RREAEALLQLNG-------DFLVRESTTTPGQYVLTGLQSGQPKH-LLLVDPEGVVRTKD 67
Query: 150 QQFDSVNSLFRWFKEHFRDPIPGAGVAV 177
+F+SV+ L + ++ PI AG +
Sbjct: 68 HRFESVSHLISYHMDN-HLPIISAGSEL 94
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 38.3 bits (89), Expect = 0.001
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYF-VSLSKNYPGKFLLSYLPASRSRHEFISVTPEG----- 144
R AE +L + F V S+ + G + LS+ + +H I +
Sbjct: 18 RHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKF 77
Query: 145 FRFRGQQFDSVNSLFRWFKEHFRD 168
F FDS+ L +++
Sbjct: 78 FLTDNLVFDSLYDLITHYQQVPLR 101
Score = 36.4 bits (84), Expect = 0.005
Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 28/174 (16%)
Query: 7 IVRPS--SKGADHLTVTWKVADDLYQH--IDVREEGKENSFSLGRSLWIGTEEFEDLDEI 62
+VR S G L+ + QH I R++ F L F+ L ++
Sbjct: 40 LVRESETFVGDYTLSF---WRNGKVQHCRIHSRQDAGTPKFFL-----TDNLVFDSLYDL 91
Query: 63 IARHVSPMAANVRELLSFRYYREECGGM-----------RDKAEEVLRQEKRNNPNKIHY 111
I + + + R +AE +L + R+
Sbjct: 92 ITHYQQVPLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLMRVPRDG-----A 146
Query: 112 FVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEH 165
F+ +N P + +S+ + +H + + +FDS+ L ++++H
Sbjct: 147 FLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKH 200
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 36.4 bits (85), Expect = 0.001
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEG-FRFRG 149
R KAEE+L +++ + + + S++ PG F LS + +H + G +
Sbjct: 12 RAKAEEMLSKQRHDG----AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV 67
Query: 150 QQFDSVNSLFRWFKEH 165
+F+S+N L + +
Sbjct: 68 VKFNSLNELVDYHRST 83
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 36.1 bits (84), Expect = 0.002
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEG-FRFRG 149
R KAEE+L +++ + + + S++ PG F LS + +H + G +
Sbjct: 15 RAKAEEMLSKQRHDG----AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV 70
Query: 150 QQFDSVNSLFRWFKEH 165
+F+S+N L + +
Sbjct: 71 VKFNSLNELVDYHRST 86
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 35.2 bits (81), Expect = 0.005
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYF-VSLSKNYPGKFLLSYLPASRSRHEFISVTPEG----- 144
R AE++L++ K F V S+ +P + LS+ + R +H I T E
Sbjct: 32 RTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKY 91
Query: 145 FRFRGQQFDSVNSL 158
+ F+S+ +L
Sbjct: 92 YLTDNLTFNSIYAL 105
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 34.7 bits (80), Expect = 0.006
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFRGQ 150
R + E+L + V S+ +++LS L RH I +R G+
Sbjct: 25 RAEVAELLVHSG-------DFLVRESQG-KQEYVLSVLWDGLPRHFIIQSLDNLYRLEGE 76
Query: 151 QFDSVNSLFRWFKEHFRDPIPGAGVAV 177
F S+ L + P+ V
Sbjct: 77 GFPSIPLLIDHLLST-QQPLTKKSGVV 102
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 34.6 bits (80), Expect = 0.007
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEG-FRFRG 149
+ +A +L + + V S N PG + L + + I TP F G
Sbjct: 25 KQEAYNLLMTVGQVC----SFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGG 80
Query: 150 QQFDSVNSLFRWFKEH 165
+ ++S+ + +++
Sbjct: 81 RYYNSIGDIIDHYRKE 96
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 35.0 bits (81), Expect = 0.017
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGF-RFRG 149
R++AE +L + + V S NYPG + L + H I
Sbjct: 89 REQAERLLYPPETGL-----FLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEE 143
Query: 150 QQFDSVNSLFRWFKEH 165
F+++ L +
Sbjct: 144 VYFENLMQLVEHYTTD 159
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide
binding protein; HET: PTR; 1.80A {Mus musculus} SCOP:
d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 32.9 bits (76), Expect = 0.018
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEG-FRFRG 149
R +AE +L + + + S++ PG F +S +H + +G +
Sbjct: 18 RHQAENLLMGKDIG-----FFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWT 72
Query: 150 QQFDSVNSLFRWFKEH 165
++F S+N L +++
Sbjct: 73 EKFPSLNKLVDYYRTT 88
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 33.0 bits (76), Expect = 0.022
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEG-FRFRG 149
R +A+ L+ ++ + V S PG ++LS SR H I+ P F+
Sbjct: 28 RQEAQTRLQGQRHGM-----FLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGD 82
Query: 150 QQFDSVNSL 158
Q+FD + +L
Sbjct: 83 QEFDHLPAL 91
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation,
binding specificity; HET: PTR MPD; 1.45A {Homo sapiens}
PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 32.2 bits (74), Expect = 0.035
Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFRGQ 150
R +AE L + + + S++ P F +S + +++H + + + +
Sbjct: 14 RHQAECALNERGVEG----DFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQR 69
Query: 151 QFDSVNSLFRWFKEHFRDPIPGA 173
+F +++ L +K+ PI +
Sbjct: 70 RFHTMDELVEHYKKA---PIFTS 89
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 33.5 bits (76), Expect = 0.044
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 2/90 (2%)
Query: 148 RGQQFDSVNSLFRWFKEHFRDPIPGAGVAVGPGGQTPYGGARQTPGGGHLPYHTPGMTPH 207
RG+ S+ K+ +P AG A GPG G R P G +P G+
Sbjct: 73 RGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAG--RGIPAGVPMPQAPAGLAGP 130
Query: 208 HRGMPTPLGHHSSNMGGPVLMHPPTGTPTP 237
RG+ P + G +
Sbjct: 131 VRGVGGPSQQVMTPQGRGTVAAAAAAATAS 160
Score = 31.2 bits (70), Expect = 0.24
Identities = 17/70 (24%), Positives = 20/70 (28%)
Query: 169 PIPGAGVAVGPGGQTPYGGARQTPGGGHLPYHTPGMTPHHRGMPTPLGHHSSNMGGPVLM 228
A + G Q P G P G GM P MG P+ +
Sbjct: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGI 205
Query: 229 HPPTGTPTPH 238
P GTP
Sbjct: 206 PPGRGTPMGM 215
Score = 30.8 bits (69), Expect = 0.31
Identities = 20/69 (28%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 169 PIPGAGVAVGPGGQTPYGGARQTPGGGHLPYHTPGMTPHHRGMPTPLGHHSSNMGGPVLM 228
I GA PG P G G P G P R P G P+ M
Sbjct: 160 SIAGAPTQYPPGRGGPPPP----MGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGM 215
Query: 229 HPPTGTPTP 237
PP P P
Sbjct: 216 PPPGMRPPP 224
Score = 28.5 bits (63), Expect = 1.7
Identities = 19/70 (27%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 169 PIPGAGVAVGPGGQTPYGGARQTPGGGHLPYHTPGMTPHH-RGMPTPLGHHSSNMGGPVL 227
A A G T Y R P P GM P+G MG P
Sbjct: 152 AAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG---PPMGIPPG 208
Query: 228 MHPPTGTPTP 237
P G P P
Sbjct: 209 RGTPMGMPPP 218
Score = 27.3 bits (60), Expect = 3.7
Identities = 19/76 (25%), Positives = 20/76 (26%), Gaps = 7/76 (9%)
Query: 169 PIPGAGVAVGPG-------GQTPYGGARQTPGGGHLPYHTPGMTPHHRGMPTPLGHHSSN 221
PG G A G G Q P G A G G +S
Sbjct: 102 GGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASI 161
Query: 222 MGGPVLMHPPTGTPTP 237
G P P G P P
Sbjct: 162 AGAPTQYPPGRGGPPP 177
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 31.1 bits (71), Expect = 0.099
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFRGQ 150
+AE +L + + SK+ PG F LS H I T + + G
Sbjct: 16 GVEAENLLLTRGVDG----SFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGG 71
Query: 151 -QFDSVNSLFRWFKEH 165
+F ++ L +++ EH
Sbjct: 72 EKFATLAELVQYYMEH 87
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 32.2 bits (73), Expect = 0.12
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 91 RDKAEEVLRQEKRNNPNKIH--YFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRF- 147
R +AEE L+ + + G ++LS + R H I G
Sbjct: 15 RAEAEEHLKL-----AGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAI 69
Query: 148 -RGQQFDSVNSL 158
G+ L
Sbjct: 70 AGGKAHCGPAEL 81
Score = 29.1 bits (65), Expect = 1.3
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRF--R 148
R++AE L + + + + K G + LS + H IS G
Sbjct: 168 REEAERKLYSGAQTDG---KFLLRPRKE-QGTYALSLIYGKTVYHYLISQDKAGKYCIPE 223
Query: 149 GQQFDSVNSLFRWFKEH 165
G +FD++ L + K
Sbjct: 224 GTKFDTLWQLVEYLKLK 240
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 31.0 bits (70), Expect = 0.13
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 26/112 (23%)
Query: 66 HVSPMAANVRELLSFRYYREECGGMRDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLL 125
H S S +Y+ RD+A +L+ + + + S ++ G + L
Sbjct: 6 HHSSGLVPRGSDTSKFWYKPHLS--RDQAIALLKDKDPGA-----FLIRDSHSFQGAYGL 58
Query: 126 SYLPASRS---------------RHEFISVTPEGFRFRG----QQFDSVNSL 158
+ A+ RH I P+G + +G F S+++L
Sbjct: 59 ALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSAL 110
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain;
HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1
PDB: 1csy_A* 1csz_A*
Length = 254
Score = 31.4 bits (71), Expect = 0.22
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 91 RDKAEEVLRQEKRNNPNKIH--YFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRF- 147
R++AE+ L Q Y + S+NY G F LS ++ H I G
Sbjct: 14 REEAEDYLVQ-----GGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAI 68
Query: 148 -RGQQFDSVNSL 158
G+ S L
Sbjct: 69 AGGRTHASPADL 80
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 30.3 bits (69), Expect = 0.23
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 19/76 (25%)
Query: 91 RDKAEEVLRQEK------RNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEG 144
R AE +L R S++ PG+ +S R H I+ T +G
Sbjct: 25 RSAAEYLLSSLINGSFLVRE-----------SESSPGQLSISLRYEGRVYHYRINTTADG 73
Query: 145 --FRFRGQQFDSVNSL 158
+ +F ++ L
Sbjct: 74 KVYVTAESRFSTLAEL 89
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 29.8 bits (68), Expect = 0.23
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYF-VSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRF-- 147
R +A L+ E N F + +S+ ++LS RH I G
Sbjct: 11 RSEAVRRLQAE----GNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLN 66
Query: 148 RGQQFDSVNSL 158
F S+ L
Sbjct: 67 EAVSFLSLPEL 77
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 29.9 bits (68), Expect = 0.24
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 11/75 (14%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGF----- 145
+ + E +L + + ++ + S++ PG L I G+
Sbjct: 12 KRECEALLLKGGVDG----NFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIET 67
Query: 146 --RFRGQQFDSVNSL 158
F ++ L
Sbjct: 68 DAHTPRTIFPNLQEL 82
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 29.7 bits (67), Expect = 0.37
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRF--- 147
R+ E++L + Y + S++ PG + L L +S T G
Sbjct: 13 RETGEKLLLATGLDGS----YLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAET 68
Query: 148 ----RGQQFDSVNSL 158
+ F + +L
Sbjct: 69 APGVHKRYFRKIKNL 83
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 30.7 bits (69), Expect = 0.40
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRF--R 148
R +AEE L+ + + + G ++LS + R H I G
Sbjct: 17 RAEAEEHLKLAGMADGL---FLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG 73
Query: 149 GQQFDSVNSL 158
G+ L
Sbjct: 74 GKAHCGPAEL 83
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 29.2 bits (66), Expect = 0.46
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRF--- 147
R+ E++L + Y + S++ PG + L L +S T G
Sbjct: 13 RETGEKLLLATGLDG----SYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAET 68
Query: 148 ----RGQQFDSVNSL 158
+ F + +L
Sbjct: 69 APGVHKRYFRKIKNL 83
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 30.5 bits (69), Expect = 0.51
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEG--FRFR 148
R+ AE +L + + V S++ PG+ +S R H I+ +G +
Sbjct: 114 RNAAEYLLSSGINGS-----FLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSS 168
Query: 149 GQQFDSVNSLFRWFKEH 165
+F+++ L
Sbjct: 169 ESRFNTLAELVHHHSTV 185
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 30.4 bits (68), Expect = 0.61
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 179 PGGQTPYGGARQTPGGGHLPYH-TPGMTPHHRGMP-----TPLGHHSSNMGGPVLMHPPT 232
P G Q P G PY +P + G P +PL S +
Sbjct: 1466 PTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLL 1525
Query: 233 GTPTPH 238
G +P+
Sbjct: 1526 GAASPY 1531
Score = 29.3 bits (65), Expect = 1.5
Identities = 10/61 (16%), Positives = 15/61 (24%), Gaps = 1/61 (1%)
Query: 178 GPGGQTPYGGARQTPGGGHLPYHTPGMTP-HHRGMPTPLGHHSSNMGGPVLMHPPTGTPT 236
G TPY + G +P G G + G + +P
Sbjct: 1479 PEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPG 1538
Query: 237 P 237
Sbjct: 1539 Y 1539
>3khk_A Type I restriction-modification system methylation subunit;
structural genomics, PSI-2, protein structure
initiative; 2.55A {Methanosarcina mazei}
Length = 544
Score = 29.7 bits (67), Expect = 0.86
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 21 TWKVADDLYQHID------VREEGKENSFSLGRSLWIGTEEFEDLDEIIARH 66
W+ + ++N F L ++G E ED H
Sbjct: 493 NWQQEWSEENNQAGFCFSADLALIRKNDFVLTPGRYVGAEAEEDEGHHHHHH 544
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 29.4 bits (65), Expect = 1.0
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRF--R 148
R+KAE +LR + + V S G + S + +H I+ T G+ F
Sbjct: 310 RNKAENLLR----GKRDGT-FLVRESSK-QGCYACSVVVDGEVKHCVINKTATGYGFAEP 363
Query: 149 GQQFDSVNSL 158
+ S+ L
Sbjct: 364 YNLYSSLKEL 373
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 26.9 bits (60), Expect = 1.1
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 148 RGQQF--DSVNSLFRWFKEHFRDPIP 171
RG +F ++V L WF ++ +P
Sbjct: 1 RGHRFTKENVRILESWFAKNIENPYL 26
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 27.9 bits (62), Expect = 1.1
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 23/93 (24%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEG------ 144
R +A +L+ ++ + V S PG ++LS SR H I+ +
Sbjct: 9 RQEAVALLQGQRHGV-----FLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPS 63
Query: 145 ------------FRFRGQQFDSVNSLFRWFKEH 165
R Q+FDS+ +L ++K H
Sbjct: 64 PAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIH 96
>3lkd_A Type I restriction-modification system methyltransferase subunit;
Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics,
PSI-2; 2.25A {Streptococcus thermophilus}
Length = 542
Score = 29.2 bits (66), Expect = 1.2
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 36 EEGKENSFSLGRSLWIGT---EEFEDLDEIIARHVSPMAANVRELLSFRYYREECGGMRD 92
EE EN ++L ++ T EE E L EI+A+ A + S + G
Sbjct: 460 EEIVENDYNLNIPRYVDTFEEEEVEPLTEIVAKINQTNATIESQTASLLDMLGQLHGTTP 519
Query: 93 KAEEVLRQEKRNNPN 107
+A+E L+ +
Sbjct: 520 EADEELKAFVKAFKG 534
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 29.3 bits (65), Expect = 1.3
Identities = 13/74 (17%), Positives = 18/74 (24%)
Query: 165 HFRDPIPGAGVAVGPGGQTPYGGARQTPGGGHLPYHTPGMTPHHRGMPTPLGHHSSNMGG 224
G G P G +PG H P T + G P +
Sbjct: 22 SSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHS 81
Query: 225 PVLMHPPTGTPTPH 238
+ PT +
Sbjct: 82 MSVPTTPTLGFSTG 95
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET:
PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A*
1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L*
1cwe_A*
Length = 105
Score = 27.6 bits (62), Expect = 1.5
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 12/83 (14%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYF-VSLSKNYPGKFLLSYLPASRSRHEF-----ISVTPEG 144
R AE L N F + S++ G F LS +++ E I G
Sbjct: 13 RKDAERQLLAP----GNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG 68
Query: 145 --FRFRGQQFDSVNSLFRWFKEH 165
+ F ++ L R +
Sbjct: 69 GFYISPRITFPGLHELVRHYTNA 91
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 28.8 bits (65), Expect = 1.5
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 13/96 (13%)
Query: 77 LLSFRYYREECGGM-RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRH 135
L +Y G + R + E+L + V S+ +++LS L RH
Sbjct: 10 LHEQLWY---HGAIPRAEVAELLVHSG-------DFLVRESQG-KQEYVLSVLWDGLPRH 58
Query: 136 EFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIP 171
I +R G+ F S+ L + P+
Sbjct: 59 FIIQSLDNLYRLEGEGFPSIPLLIDHLLST-QQPLT 93
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 27.7 bits (62), Expect = 1.7
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 91 RDKAEEVLRQEKRNNPNKIH--YFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFR 148
RD+A+ ++ Q + + V S++ P F+LS + +H I +
Sbjct: 35 RDEAQRLIIQ-----QGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMF 89
Query: 149 ------GQQFDSVNSL 158
+F + L
Sbjct: 90 HTLDDGHTRFTDLIQL 105
>2g09_A Cytosolic 5'-nucleotidase III; uniprot Q9D020, UMPH-1, pyrim
nucleotidase 1, P5N-1, NT5C3 protein, AAH38029,
BC038029, M LEAD poisoning; HET: PIN; 2.10A {Mus
musculus} PDB: 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A*
2g07_A* 2jga_A 2vkq_A 2cn1_A
Length = 297
Score = 28.4 bits (63), Expect = 1.8
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Query: 57 EDLDEIIARHVSPMAANVRELLSFRYYREE-----CGGMRDKAEEVLRQEKRNNPN 107
L EI+A + G+ D EEV+RQ + N
Sbjct: 129 AKLKEIVADSDVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSN 184
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 28.3 bits (64), Expect = 1.9
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 119 YPGKFLLSYLPASRSRHEFISVTPEGFR 146
Y G + +PA S PE
Sbjct: 74 YVGPGGVKVVPAGVSLEGLRKANPEKLE 101
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding,
transcription, nucleus, phosphoprotein, DNA bindi
protein; 1.95A {Homo sapiens}
Length = 67
Score = 26.1 bits (58), Expect = 2.3
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 153 DSVNSLFRWFKEHFRDPIP 171
+ N + W +H P P
Sbjct: 8 VATNIMRAWLFQHLTHPYP 26
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 27.9 bits (62), Expect = 2.5
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 14/84 (16%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRF--- 147
+ AE +L + + + S F +S+ SRS H I F F
Sbjct: 43 KYAAEALLEGKPEG-----TFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAH 97
Query: 148 --RGQQFDSVNSLFRWFKEHFRDP 169
+ L EH++DP
Sbjct: 98 DPCVFHSPDITGLL----EHYKDP 117
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 28.0 bits (61), Expect = 3.2
Identities = 9/69 (13%), Positives = 15/69 (21%)
Query: 169 PIPGAGVAVGPGGQTPYGGARQTPGGGHLPYHTPGMTPHHRGMPTPLGHHSSNMGGPVLM 228
P+ V G T + T P P +S+ +
Sbjct: 4 PLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAV 63
Query: 229 HPPTGTPTP 237
+P
Sbjct: 64 PTIHFKESP 72
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 28.1 bits (62), Expect = 3.3
Identities = 8/75 (10%), Positives = 12/75 (16%)
Query: 163 KEHFRDPIPGAGVAVGPGGQTPYGGARQTPGGGHLPYHTPGMTPHHRGMPTPLGHHSSNM 222
++ + GG TPY +P
Sbjct: 1451 VKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTA 1510
Query: 223 GGPVLMHPPTGTPTP 237
G T
Sbjct: 1511 YGGADYGEATSPFGA 1525
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 26.5 bits (59), Expect = 3.7
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 91 RDKAEEVLRQEKRNNPNKIH--YFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFR 148
R++++ ++ Q + + V S+ P F+LS + +H I + E R
Sbjct: 23 REESQRLIGQ-----QGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLY 77
Query: 149 ------GQQFDSVNSL 158
+F + L
Sbjct: 78 FSMDDGQTRFTDLLQL 93
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 27.1 bits (60), Expect = 3.8
Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 17/109 (15%)
Query: 66 HVSPMAANVRELLSFRYYREECGGM-RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFL 124
+ +A +REL +Y G M ++A+E L++ + + S +
Sbjct: 3 QAARLAKALRELGQTGWYW---GSMTVNEAKEKLKEAPEG-----TFLIRDSSHSDYLLT 54
Query: 125 LSYLPASRSRHEFISVTPEGFRF--------RGQQFDSVNSLFRWFKEH 165
+S ++ + I FR + +QFDSV L ++ +
Sbjct: 55 ISVKTSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQM 103
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 27.4 bits (60), Expect = 3.9
Identities = 18/72 (25%), Positives = 19/72 (26%), Gaps = 5/72 (6%)
Query: 167 RDPIPGAGVAVGPGGQTPYGGARQTPGGGHLPYHTPGMTPHHRGMPTPLGHHSSNMGGPV 226
+ G G G P GG PG P P P G GGP
Sbjct: 161 KTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAG-----PGGPP 215
Query: 227 LMHPPTGTPTPH 238
P T H
Sbjct: 216 PPFPAGQTHHHH 227
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 73
Score = 25.4 bits (56), Expect = 5.2
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 153 DSVNSLFRWFKEHFRDPIP 171
+ N + W +H P P
Sbjct: 17 HATNVMRSWLFQHIGHPYP 35
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 26.1 bits (58), Expect = 5.3
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEF------ISVTPEG 144
R ++E++LRQ+ + + V S G + +S + + + + E
Sbjct: 20 RSQSEQLLRQKGKEG----AFMVRNSSQ-VGMYTVSLFSKAVNDKKGTVKHYHVHTNAEN 74
Query: 145 --FRFRGQQFDSVNSLFRWFKEH 165
+ FDS+ L + + +
Sbjct: 75 KLYLAENYCFDSIPKLIHYHQHN 97
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 26.5 bits (58), Expect = 5.3
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 17/87 (19%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRF--- 147
+A +L E + + S + F LS S +++ I F
Sbjct: 32 GGEANLLLSAEPAG-----TFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSD 86
Query: 148 -----RGQQFDSVNSLFRWFKEHFRDP 169
+FD V L H+ P
Sbjct: 87 PRSTQPVPRFDCVLKLV----HHYMPP 109
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 26.8 bits (60), Expect = 5.4
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 96 EVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFR 146
++ R +K + P L +P+ + + +++ PE
Sbjct: 64 DISNASDR--LDKSLLDTMVQHISPS---LDLIPSPATFEKIVNIEPERVS 109
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 26.3 bits (58), Expect = 5.4
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 64 ARHVSPMAANVRELLSFRYYREECGGM-RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGK 122
V+ + +++L +Y G + R +AE L + V S +
Sbjct: 8 PMDVTSLTEELKKLAKQGWYW---GPITRWEAEGKLANVPDG-----SFLVRDSSDDRYL 59
Query: 123 FLLSYLPASRSRHEFISVTPEGFRF----RGQQFDSVNSL 158
LS+ ++ H I + F F + S+ L
Sbjct: 60 LSLSFRSHGKTLHTRIEHSNGRFSFYEQPDVEGHTSIVDL 99
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein,
X-linked TGF(beta) induced transcription factor 2-like
protein, TGIF-like on the X; NMR {Homo sapiens}
Length = 83
Score = 25.5 bits (56), Expect = 5.6
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 153 DSVNSLFRWFKEHFRDPIP 171
+SV L W +H P
Sbjct: 17 ESVKILRDWMYKHRFKAYP 35
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus
musculus} SCOP: a.4.1.1
Length = 64
Score = 25.0 bits (55), Expect = 6.2
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 153 DSVNSLFRWFKEHFRDPIP 171
+ L +F H +P P
Sbjct: 13 QATEILNEYFYSHLSNPYP 31
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast
structural genomics CON PSI-biology, transcription; NMR
{Homo sapiens}
Length = 89
Score = 25.5 bits (56), Expect = 6.2
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 153 DSVNSLFRWFKEHFRDPIP 171
+SV L W EH + P
Sbjct: 15 ESVQILRDWLYEHRYNAYP 33
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 26.1 bits (58), Expect = 6.2
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEG------ 144
R KAEE+L + ++ + V S++ + L L + I +
Sbjct: 19 RSKAEELLSRTGKDG----SFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQA 74
Query: 145 -FRFRGQQFDSVNSL 158
+ F ++ L
Sbjct: 75 SEGVSMRFFTKLDQL 89
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 25.6 bits (56), Expect = 6.6
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 148 RGQQF--DSVNSLFRWFKEHFRDPIP 171
RG +F ++V L WF ++ +P
Sbjct: 30 RGHRFTKENVRILESWFAKNIENPYL 55
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 25.8 bits (57), Expect = 7.1
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 91 RDKAEEVLRQEK-------RNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPE 143
R +AE++L+QE R++ Y VS+ G P RH + TP+
Sbjct: 20 RSQAEQLLKQEGKEGGFIVRDSSKAGKYTVSVFAKSTGD------PQGVIRHYVVCSTPQ 73
Query: 144 G--FRFRGQQFDSVNSLFRWFKEH 165
+ F ++ L + + +
Sbjct: 74 SQYYLAEKHLFSTIPELINYHQHN 97
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian,
protein-DNA complex, HOX hexapeptide, TALE homeodomain,
homeodomain interaction; 1.90A {Homo sapiens} SCOP:
a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Length = 73
Score = 25.0 bits (55), Expect = 7.2
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 153 DSVNSLFRWFKEHFRDPIP 171
+ L +F H +P P
Sbjct: 11 QATEILNEYFYSHLSNPYP 29
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 27.1 bits (59), Expect = 7.2
Identities = 8/87 (9%), Positives = 21/87 (24%), Gaps = 22/87 (25%)
Query: 42 SFSLGRSLWIGTEEFEDLDEIIARH-------------VSPMAANVRELLSFRYYREECG 88
G+ L + F + E++ +S Y +
Sbjct: 248 VDMSGKFL----DLFTQVHELLFESTKINAHTQVPVLILSYARGRT-----LTYAKSMLE 298
Query: 89 GMRDKAEEVLRQEKRNNPNKIHYFVSL 115
+ + +P +I + +
Sbjct: 299 WLSPSLLKTWENRNNTSPFEIGSRIKI 325
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein,
protein/DNA complex; HET: DNA; 2.35A {Homo sapiens}
SCOP: a.4.1.1 PDB: 1lfu_P
Length = 87
Score = 25.2 bits (55), Expect = 8.1
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 153 DSVNSLFRWFKEHFRDPIP 171
+ L +F H +P P
Sbjct: 11 QATEILNEYFYSHLSNPYP 29
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta
barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB:
2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A*
3fdk_A* 3htw_A*
Length = 339
Score = 26.6 bits (58), Expect = 8.7
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 15/109 (13%)
Query: 130 ASRSRHEFISVTPEGFRFRGQQFDSVNSLFRWFKEHFRDPIPGAGVAVGPGGQTPYGGAR 189
+ + F+FR D+ + ++ + + I G G+ G
Sbjct: 108 CATGFYYEGGGATTYFKFRASLGDAESEIYEMMRTEVTEGIAGTGIRAGVIK-------- 159
Query: 190 QTPGGGHLPYHTPGMTPHHRGMPTPLGHHSSNMGGPVLMHPPTGTPTPH 238
L +TP+ + G P++ H G P
Sbjct: 160 -------LASSRDAITPYEQLFFRAAARVQRETGVPIITHTQEGQQGPQ 201
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 25.1 bits (55), Expect = 8.9
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 148 RGQQF--DSVNSLFRWFKEHFRDPIP 171
RG +F ++V L WF ++ +P
Sbjct: 5 RGHRFTKENVRILESWFAKNIENPYL 30
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 25.7 bits (56), Expect = 9.8
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 17/87 (19%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRF--- 147
+A +L E + + S + F LS S +++ I F
Sbjct: 43 GGEANLLLSAEPAGT-----FLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSD 97
Query: 148 -----RGQQFDSVNSLFRWFKEHFRDP 169
+FD V L H+ P
Sbjct: 98 PRSTQPVPRFDXVLKLV----HHYMPP 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.435
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,084,058
Number of extensions: 259147
Number of successful extensions: 776
Number of sequences better than 10.0: 1
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 106
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)