RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1815
(238 letters)
>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 40.7 bits (95), Expect = 1e-05
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFRGQ 150
R +AE +L+ + V S PG+++L+ L + + +H + R +
Sbjct: 16 RREAEALLQLNG-------DFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDH 68
Query: 151 QFDSVNSLFRWFKEHFRDPIPGAGVAV 177
+F+SV+ L + ++ PI AG +
Sbjct: 69 RFESVSHLISYHMDN-HLPIISAGSEL 94
>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 40.3 bits (94), Expect = 2e-05
Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFR-- 148
R++++ ++ Q+ + + V S+ P F+LS + +H I + E R
Sbjct: 19 REESQRLIGQQGLVDGL---FLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFS 75
Query: 149 ----GQQFDSVNSLFRWFKEHFRDPIP 171
+F + L + + + R +P
Sbjct: 76 MDDGQTRFTDLLQLVEFHQLN-RGILP 101
>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor
kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 39.6 bits (92), Expect = 3e-05
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFRGQ 150
R +A L+ E + + +S+ ++LS RH I G +
Sbjct: 11 RSEAVRRLQAEGNATGA---FLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNE 67
Query: 151 --QFDSVNSLFRWFKEH 165
F S+ L + +
Sbjct: 68 AVSFLSLPELVNYHRAQ 84
>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2,
SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 39.6 bits (92), Expect = 4e-05
Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 17/109 (15%)
Query: 66 HVSPMAANVRELLSFRYYREECGGM-RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFL 124
+ +A +REL +Y G M ++A+E L++ + + S +
Sbjct: 1 QAARLAKALRELGQTGWY---WGSMTVNEAKEKLKEAPEGT-----FLIRDSSHSDYLLT 52
Query: 125 LSYLPASRSRHEFISVTPEGFRF--------RGQQFDSVNSLFRWFKEH 165
+S ++ + I FR + +QFDSV L ++ +
Sbjct: 53 ISVKTSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQM 101
Score = 32.7 bits (74), Expect = 0.008
Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 7 IVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEIIARH 66
++R SS LT++ K ++ + + + + ++F+ + +I +
Sbjct: 40 LIRDSSHSDYLLTISVKT-SAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYY 98
Query: 67 V 67
V
Sbjct: 99 V 99
>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 86
Score = 38.8 bits (90), Expect = 5e-05
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 76 ELLSFRYYREECGGM-RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSR 134
EL + ++ G + R KA +++ + + + S+ PG+ +L++ +++
Sbjct: 1 ELSDYPWF---HGTLSRVKAAQLVLAGGPRSHG--LFVIRQSETRPGECVLTFNFQGKAK 55
Query: 135 HEFISVTPEG-FRFRGQQFDSVNSLFRWFKEHFR 167
H +S+ G + F SV + HF
Sbjct: 56 HLRLSLNGHGQCHVQHLWFQSVFDML----RHFH 85
>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10,
GRB10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 36.5 bits (84), Expect = 5e-04
Identities = 9/81 (11%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFR-- 148
R+++ +++Q+ + + + S++ P F+L+ + ++ I + +
Sbjct: 14 REESHRIIKQQGLVDGL---FLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFS 70
Query: 149 ----GQQFDSVNSLFRWFKEH 165
+F + L +++ +
Sbjct: 71 LDDGNTKFSDLIQLVDFYQLN 91
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 36.2 bits (83), Expect = 5e-04
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRF--- 147
R+ E++L + Y + S++ PG + L L +S T G
Sbjct: 13 RETGEKLLLATGLDG----SYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAET 68
Query: 148 ----RGQQFDSVNSLFRWFKEH 165
+ F + +L F++
Sbjct: 69 APGVHKRYFRKIKNLISAFQKP 90
>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4,
SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 35.8 bits (82), Expect = 9e-04
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 14/102 (13%)
Query: 70 MAANVRELLSFRYYREECGGM-RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYL 128
+ ++ ++ + Y G M + AE +L + + + S F +S+
Sbjct: 1 LVPDLLQINNNPCY---WGVMDKYAAEALLEGKPEGT-----FLLRDSAQEDYLFSVSFR 52
Query: 129 PASRSRHEFISVTPEGFRFRG-----QQFDSVNSLFRWFKEH 165
SRS H I F F + L +K+
Sbjct: 53 RYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGLLEHYKDP 94
>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 105
Score = 34.6 bits (79), Expect = 0.002
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFRGQ 150
R +AE +L + R+ + V + +S+ + +H + +
Sbjct: 18 RAQAEHMLMRVPRDG----AFLVRKRNEPNS-YAISFRAEGKIKHCRVQQEGQTVMLGNS 72
Query: 151 QFDSVNSLFRWFKEH 165
+FDS+ L ++++H
Sbjct: 73 EFDSLVDLISYYEKH 87
>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha
subunit {Cow (Bos taurus) [TaxId: 9913]}
Length = 107
Score = 34.6 bits (79), Expect = 0.002
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEGFRFRG- 149
R+KAE +LR + F+ + G + S + +H I+ T G+ F
Sbjct: 18 RNKAENLLRG------KRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYGFAEP 71
Query: 150 -QQFDSVNSLFRWFKEH 165
+ S+ L ++
Sbjct: 72 YNLYSSLKELVLHYQHT 88
>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens)
[TaxId: 9606]}
Length = 109
Score = 32.8 bits (74), Expect = 0.008
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 23/99 (23%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFISVTPEG------ 144
R +A +L+ ++ + V S PG ++LS SR H I+ +
Sbjct: 9 RQEAVALLQGQRHGV-----FLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPS 63
Query: 145 ------------FRFRGQQFDSVNSLFRWFKEHFRDPIP 171
R Q+FDS+ +L ++K H+ D
Sbjct: 64 PAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTT 102
>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 32.3 bits (73), Expect = 0.012
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRSRHEFI-----SVTPEGF 145
R AE L + + + + S++ G F LS +++ E + G
Sbjct: 13 RKDAERQLLAPGNTHGS---FLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGG 69
Query: 146 RFRGQ--QFDSVNSLFRWFKEH 165
+ F ++ L R +
Sbjct: 70 FYISPRITFPGLHELVRHYTNA 91
>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium
discoideum [TaxId: 44689]}
Length = 131
Score = 32.6 bits (74), Expect = 0.014
Identities = 9/84 (10%), Positives = 27/84 (32%), Gaps = 9/84 (10%)
Query: 91 RDKAEEVLRQEKRNNPNKIHYFVSLSKNYPGKFLLSYLPASRS---RHEFISVTPEGFRF 147
R + + L+ + + + S+ PG+F ++Y+ +H +
Sbjct: 18 RQEVNDALQNQDPGT-----FIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDTAAAK 72
Query: 148 RGQQFDSVNSLFRWFKEHFRDPIP 171
+ D ++ ++
Sbjct: 73 KT-FPDFLSEHSQFVNLLQWTKDT 95
>d1sgoa_ d.82.3.1 (A:) Hypothetical protein c14orf129, hspc210
{Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 31.0 bits (70), Expect = 0.052
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 84 REECGGMRDKAEEVLRQEKRNNPNKIHYFV---SLSKNYPGKFLLSYLPA-SRSRHEF-I 138
+ MR +AE V+ N + + V +SK+ ++Y+ ++ R+ + +
Sbjct: 27 GTDMKDMRLEAEAVV--------NDVLFAVNNMFVSKSLRCADDVAYINVETKERNRYCL 78
Query: 139 SVTPEGFRFRGQQFDSVN 156
+T G + G FD V+
Sbjct: 79 ELTEAGLKVVGYAFDQVD 96
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermus thermophilus [TaxId:
274]}
Length = 211
Score = 29.7 bits (66), Expect = 0.25
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 14 GADHLTVTWKVADDLYQH 31
GAD T+ V L +H
Sbjct: 187 GADIATMPHAVFKQLLKH 204
>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Escherichia coli [TaxId: 562]}
Length = 220
Score = 29.0 bits (64), Expect = 0.36
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 14 GADHLTVTWKVADDLYQHI 32
G + +T+ VA + +
Sbjct: 180 GCESITLPLDVAQQMISYP 198
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermotoga maritima [TaxId:
2336]}
Length = 218
Score = 28.5 bits (63), Expect = 0.61
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 14 GADHLTVTWKVADDLYQH 31
G D +T+ + V + L++H
Sbjct: 180 GVDIVTMPFAVLEKLFKH 197
>d1ddfa_ a.77.1.2 (A:) Fas {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 27.6 bits (61), Expect = 0.74
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 27 DLYQHID-VREEGKENSF-SLGRSLWIGTEEFEDLDEIIARHVSPMAANVRELLSFRYYR 84
DL ++I + + R + +DEI +V A +LL +
Sbjct: 12 DLSKYITTIAGVMTLSQVKGFVRKNGVNEA---KIDEIKNDNVQDTAEQKVQLLRNWHQL 68
Query: 85 EECGGMRDKAEEVLRQEKRNN 105
D + L++
Sbjct: 69 HGKKEAYDTLIKDLKKANLCT 89
>d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 95
Score = 26.8 bits (59), Expect = 0.85
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 27 DLYQHID-VREEGKENSFSLGRSLWIGTEEFEDLDEIIARHVSPMAANVRELLSFRYYRE 85
L D V + + L R L + +D I ++ ++ VRE L E
Sbjct: 8 YLQVAFDIVCDNVGRDWKRLARELKVSEA---KMDGIEEKYPRSLSERVRESLKVWKNAE 64
Query: 86 ECGGMRDKAEEVLRQEKRN 104
+ + LR + N
Sbjct: 65 KKNASVAGLVKALRTCRLN 83
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal
domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 56
Score = 25.7 bits (57), Expect = 1.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 85 EECGGMRDKAEEVLRQE 101
E CGG +AE L ++
Sbjct: 27 ETCGGDLKQAESWLHKQ 43
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 52
Score = 25.3 bits (56), Expect = 1.4
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 85 EECGGMRDKAEEVLRQ 100
E+ G +KA ++LR+
Sbjct: 25 EDAGWDEEKAVQLLRE 40
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 26.5 bits (58), Expect = 2.9
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 182 QTPYGGARQTPGGGHLPYHT 201
Q P GG PG YHT
Sbjct: 324 QCPAGGLLDKPGKSRDFYHT 343
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 159
Score = 25.5 bits (55), Expect = 4.3
Identities = 14/61 (22%), Positives = 17/61 (27%), Gaps = 9/61 (14%)
Query: 177 VGPGGQTPYGGARQTPGGGHLPYHTPGMTPHHRGMPTPLGHHSSNMGGPVLMHPPTGTPT 236
V PG Q G GM P H M G +++ P G
Sbjct: 108 VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS---------GMSGTLMVLPRDGLKD 158
Query: 237 P 237
P
Sbjct: 159 P 159
>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha
subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 111
Score = 25.0 bits (54), Expect = 4.4
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 7/63 (11%)
Query: 4 GEVIVRPSSKGADHLTVTWKVADDLYQHIDVREEGKENSFSLGRSLWIGTEEFEDLDEII 63
G +VR +S + I + ++ + F + E+I
Sbjct: 33 GTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFH--RDGKYGFS-----DPLTFNSVVELI 85
Query: 64 ARH 66
+
Sbjct: 86 NHY 88
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 162
Score = 25.5 bits (55), Expect = 5.1
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 159 FRWFKEHFRDPIPGAGVAVGPGGQTPYGGARQTPGGGHLPYHTPGMTPHHRGMPTPLGHH 218
W H +D G P G ++T Y T H +
Sbjct: 92 IHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSA------QY 145
Query: 219 SSNMGGPVLMHPPTGTP 235
+ + G + ++ P P
Sbjct: 146 GNGVVGTIQINGPASLP 162
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 23.5 bits (51), Expect = 6.2
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 153 DSVNSLFRWFKEHFRDPIP 171
+ N + W +H P P
Sbjct: 12 HATNVMRSWLFQHIGHPYP 30
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 25.5 bits (55), Expect = 6.4
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 193 GGGHLPYHTPGMTPHHRGMPTPLGHHSSNMGGPVLMH 229
GGH P + P H S+ G P+
Sbjct: 258 SGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAAS 294
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 24.6 bits (53), Expect = 9.6
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 172 GAGVAVGPGGQTPYGGARQTPGG---GHLPYHTPGMTPHHRGMPTPLGHHSSNMGGPVLM 228
G PG PG+ +H + H ++ M G +L+
Sbjct: 83 NVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILV 142
Query: 229 HPPTGTP 235
P G P
Sbjct: 143 EPKEGLP 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.435
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 998,121
Number of extensions: 49838
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 38
Length of query: 238
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 155
Effective length of database: 1,268,006
Effective search space: 196540930
Effective search space used: 196540930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)