BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18151
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 9/116 (7%)
Query: 83 LKPLKKW--EITYQVRTESVVNINHKQVIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQ 140
LK L+ W ++ ++T + + ++Q W KAL++I AG+CE TY EI + +
Sbjct: 291 LKDLRVWTSQLKSTIQTAEALRLPYEQ--W----KALNEIDAGVCEELTYEEIRDTYPEE 344
Query: 141 YIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYF 196
Y DK+Y R+P GE Y+D++ RLE +I+++E + N+L++ H AVLRCLL YF
Sbjct: 345 YALREQDKYYYRYPTGESYQDLVQRLEPVIMELER-QENVLVICHQAVLRCLLAYF 399
>pdb|1TIP|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-kinase/fructose-2,6-bisphosphatase
pdb|1TIP|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-kinase/fructose-2,6-bisphosphatase
Length = 191
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 75/122 (61%), Gaps = 9/122 (7%)
Query: 83 LKPLKKW--EITYQVRTESVVNINHKQVIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQ 140
+ LK W + ++T + + ++Q W KAL++I AG+CE TY EI ++ +
Sbjct: 46 ISSLKVWTSHMKRTIQTAEALGVPYEQ--W----KALNEIDAGVCEEMTYEEIQEHYPEE 99
Query: 141 YIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEP 200
+ DK+ R+P+GE Y+D++ RLE +I+++E + N+L++ H AV+RCLL YF ++
Sbjct: 100 FALRDQDKYRYRYPKGESYEDLVQRLEPVIMELER-QENVLVICHQAVMRCLLAYFLDKS 158
Query: 201 PD 202
D
Sbjct: 159 SD 160
>pdb|1C7Z|A Chain A, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C7Z|B Chain B, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C80|A Chain A, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C80|B Chain B, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C81|A Chain A, Michaelis Complex Of Fructose-2,6-Bisphosphatase
Length = 191
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 75/122 (61%), Gaps = 9/122 (7%)
Query: 83 LKPLKKW--EITYQVRTESVVNINHKQVIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQ 140
+ LK W + ++T + + ++Q W KAL++I AG+CE TY EI ++ +
Sbjct: 46 ISSLKVWTSHMKRTIQTAEALGVPYEQ--W----KALNEIDAGVCEEMTYEEIQEHYPEE 99
Query: 141 YIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEP 200
+ DK+ R+P+GE Y+D++ RLE +I+++E + N+L++ H AV+RCLL YF ++
Sbjct: 100 FALRDQDKYRYRYPKGESYEDLVQRLEPVIMELER-QENVLVICHQAVMRCLLAYFLDKS 158
Query: 201 PD 202
D
Sbjct: 159 SD 160
>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
pdb|1K6M|B Chain B, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
Length = 432
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 112 DDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIIL 171
+ KAL++I AG+CE TY EI ++ ++ DK+ R+P+GE Y+D++ RLE +I+
Sbjct: 282 EQFKALNEIDAGVCEEMTYEEIQEHYPEEFALRDQDKYRYRYPKGESYEDLVQRLEPVIM 341
Query: 172 KIEHSKSNLLIVSHPAVLRCLLGYF 196
++E + N+L++ H AV+RCLL YF
Sbjct: 342 ELER-QENVLVICHQAVMRCLLAYF 365
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 112 DDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIIL 171
+ K L++I AG+CE TY EI ++ ++ DK+ R+P+GE Y+D++ RLE +I+
Sbjct: 319 EQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIM 378
Query: 172 KIEHSKSNLLIVSHPAVLRCLLGYF 196
++E + N+L++ H AV+RCLL YF
Sbjct: 379 ELER-QENVLVICHQAVMRCLLAYF 402
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 112 DDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIIL 171
+ K L++I AG+CE TY EI ++ ++ DK+ R+P+GE Y+D++ RLE +I+
Sbjct: 319 EQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIM 378
Query: 172 KIEHSKSNLLIVSHPAVLRCLLGYF 196
++E + N+L++ H AV+RCLL YF
Sbjct: 379 ELER-QENVLVICHQAVMRCLLAYF 402
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 112 DDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIIL 171
+ K L++I AG+CE TY EI ++ ++ DK+ R+P+GE Y+D++ RLE +I+
Sbjct: 318 EQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIM 377
Query: 172 KIEHSKSNLLIVSHPAVLRCLLGYF 196
++E + N+L++ H AV+RCLL YF
Sbjct: 378 ELER-QENVLVICHQAVMRCLLAYF 401
>pdb|1FBT|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|1FBT|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Length = 190
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 68/108 (62%), Gaps = 7/108 (6%)
Query: 95 VRTESVVNINHKQVIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWP 154
++T + + ++Q W KAL++I AG+CE TY EI ++ ++ DK+ R+P
Sbjct: 59 IQTAEALGVPYEQ--W----KALNEIDAGVCEEXTYEEIQEHYPEEFALRDQDKYRYRYP 112
Query: 155 QGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPD 202
+GE Y+D++ RLE +I ++E + N+L++ H AV RCLL YF ++ D
Sbjct: 113 KGESYEDLVQRLEPVIXELER-QENVLVICHQAVXRCLLAYFLDKSSD 159
>pdb|1EBB|A Chain A, Bacillus Stearothermophilus Yhfr
Length = 202
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 23/145 (15%)
Query: 65 CGRPLKAVVQSEINSILPLKPLKKWEITYQVRTESVVNINHKQVIWVDDHKALDDIHAGI 124
G+ L+AV + I + + L+ EI VR ++ I + L +IH G
Sbjct: 39 LGKRLEAVELAAIYTSTSGRALETAEI---VRGGRLIPIYQDE--------RLREIHLGD 87
Query: 125 CEGQTYTEIYTNHCAQYIDTRADKFYNR----WPQ-GECYKDVLTRLELIILKI--EHSK 177
EG+T+ EI + D F+ PQ GE + DV R + I H
Sbjct: 88 WEGKTHDEIRQMDPIAF-----DHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEG 142
Query: 178 SNLLIVSHPAVLRCLLGYFQEEPPD 202
+LIV+H VL+ L+ F++ P D
Sbjct: 143 ETVLIVTHGVVLKTLMAAFKDTPLD 167
>pdb|1H2E|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Phosphate
pdb|1H2F|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Trivanadate
Length = 207
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 23/145 (15%)
Query: 65 CGRPLKAVVQSEINSILPLKPLKKWEITYQVRTESVVNINHKQVIWVDDHKALDDIHAGI 124
G+ L+AV + I + + L+ EI VR ++ I + L +IH G
Sbjct: 39 LGKRLEAVELAAIYTSTSGRALETAEI---VRGGRLIPIYQDE--------RLREIHLGD 87
Query: 125 CEGQTYTEIYTNHCAQYIDTRADKFYNR----WPQ-GECYKDVLTRLELIILKI--EHSK 177
EG+T+ EI + D F+ PQ GE + DV R + I H
Sbjct: 88 WEGKTHDEIRQMDPIAF-----DHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEG 142
Query: 178 SNLLIVSHPAVLRCLLGYFQEEPPD 202
+LIV+H VL+ L+ F++ P D
Sbjct: 143 ETVLIVTHGVVLKTLMAAFKDTPLD 167
>pdb|3ED4|A Chain A, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|B Chain B, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|C Chain C, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|D Chain D, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
Length = 502
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 80 ILPLKPLKKWEITYQVRTESVVNINHKQVIWVDDHK---------ALDDIHAGICEGQTY 130
+ P L+ + T + S ++ + V W+D+ K A ++H+ + + Y
Sbjct: 177 VYPTGWLRNGQPTPRADKMSGEYVSSEVVNWLDNKKDSKPFFLYVAFTEVHSPLASPKKY 236
Query: 131 TEIYTNHCAQYIDTRADKFYNRWPQ------GECYKDV 162
++Y+ + + Y D FY W GE Y ++
Sbjct: 237 LDMYSQYMSAYQKQHPDLFYGDWADKPWRGVGEYYANI 274
>pdb|2WLX|A Chain A, Putative Thiosulfate Sulfurtransferase Ynje
Length = 423
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 139 AQYIDTRADKFYNRWPQ 155
+ IDTR FYN WPQ
Sbjct: 20 GKAIDTRPSAFYNGWPQ 36
>pdb|3IPO|A Chain A, Crystal Structure Of Ynje
pdb|3IPO|B Chain B, Crystal Structure Of Ynje
Length = 416
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 139 AQYIDTRADKFYNRWPQ 155
+ IDTR FYN WPQ
Sbjct: 21 GKAIDTRPSAFYNGWPQ 37
>pdb|3IPP|A Chain A, Crystal Structure Of Sulfur-Free Ynje
pdb|3IPP|B Chain B, Crystal Structure Of Sulfur-Free Ynje
Length = 416
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 139 AQYIDTRADKFYNRWPQ 155
+ IDTR FYN WPQ
Sbjct: 21 GKAIDTRPSAFYNGWPQ 37
>pdb|2WLR|A Chain A, Putative Thiosulfate Sulfurtransferase Ynje
Length = 423
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 139 AQYIDTRADKFYNRWPQ 155
+ IDTR FYN WPQ
Sbjct: 20 GKAIDTRPSAFYNGWPQ 36
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 138 CAQYIDTRADKFYNR-WPQGECY-KDVLTRLELIILK-IEHSKSNLLIV 183
C + +DT DKFY + +G+ +D+L ++ + I+K +EH S L ++
Sbjct: 128 CMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVI 176
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 138 CAQYIDTRADKFYNR-WPQGECY-KDVLTRLELIILK-IEHSKSNLLIV 183
C + +DT DKFY + +G+ +D+L ++ + I+K +EH S L ++
Sbjct: 84 CMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVI 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,907,674
Number of Sequences: 62578
Number of extensions: 220380
Number of successful extensions: 423
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 18
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)