Query psy18151
Match_columns 204
No_of_seqs 154 out of 1295
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 23:55:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13463 phosphatase PhoE; Pro 100.0 1.3E-37 2.8E-42 248.7 17.7 154 40-202 2-168 (203)
2 PTZ00322 6-phosphofructo-2-kin 100.0 1.7E-37 3.7E-42 285.6 17.5 179 7-199 394-599 (664)
3 PRK01295 phosphoglyceromutase; 100.0 3.5E-36 7.6E-41 241.0 18.6 157 39-202 1-175 (206)
4 PRK15004 alpha-ribazole phosph 100.0 2.4E-36 5.3E-41 240.5 17.5 152 41-201 1-165 (199)
5 PRK14116 gpmA phosphoglyceromu 100.0 5.2E-36 1.1E-40 243.4 17.7 155 41-202 2-199 (228)
6 PRK14119 gpmA phosphoglyceromu 100.0 2.9E-35 6.2E-40 239.1 17.8 155 41-202 2-199 (228)
7 PRK01112 phosphoglyceromutase; 100.0 4.1E-35 8.8E-40 238.1 18.3 153 41-202 2-198 (228)
8 PRK14118 gpmA phosphoglyceromu 100.0 6.8E-35 1.5E-39 236.8 18.1 155 41-202 1-198 (227)
9 TIGR03162 ribazole_cobC alpha- 100.0 5.3E-35 1.1E-39 228.2 16.8 150 43-202 1-162 (177)
10 COG0406 phoE Broad specificity 100.0 2.1E-34 4.6E-39 230.5 19.0 156 40-202 2-170 (208)
11 PRK03482 phosphoglycerate muta 100.0 1.3E-34 2.8E-39 233.1 17.7 153 41-202 2-167 (215)
12 PRK14117 gpmA phosphoglyceromu 100.0 1.7E-34 3.6E-39 234.9 18.1 154 41-201 2-198 (230)
13 TIGR03848 MSMEG_4193 probable 100.0 2.3E-34 5E-39 229.9 16.6 150 42-202 1-169 (204)
14 TIGR01258 pgm_1 phosphoglycera 100.0 6.7E-34 1.5E-38 233.2 18.4 155 41-202 1-198 (245)
15 PRK14120 gpmA phosphoglyceromu 100.0 1.7E-33 3.7E-38 231.1 19.1 157 39-202 3-200 (249)
16 PRK14115 gpmA phosphoglyceromu 100.0 1.6E-33 3.5E-38 231.2 18.4 155 41-202 1-198 (247)
17 PRK13462 acid phosphatase; Pro 100.0 7.4E-33 1.6E-37 221.2 16.2 144 40-202 5-164 (203)
18 PRK07238 bifunctional RNase H/ 100.0 4.4E-32 9.5E-37 234.9 19.4 154 40-202 171-337 (372)
19 PF00300 His_Phos_1: Histidine 100.0 2E-31 4.4E-36 202.9 10.9 144 42-192 1-158 (158)
20 smart00855 PGAM Phosphoglycera 100.0 2.7E-30 5.9E-35 197.6 12.5 140 42-192 1-155 (155)
21 PTZ00123 phosphoglycerate muta 100.0 3.6E-28 7.8E-33 198.4 16.2 138 58-202 16-186 (236)
22 KOG0235|consensus 100.0 1.2E-27 2.6E-32 190.1 14.2 156 40-202 5-181 (214)
23 KOG0234|consensus 99.9 1.4E-27 2.9E-32 205.1 12.9 176 8-202 215-400 (438)
24 COG0588 GpmA Phosphoglycerate 99.9 4.7E-25 1E-29 172.8 12.1 153 41-201 2-198 (230)
25 PTZ00122 phosphoglycerate muta 99.9 7.9E-23 1.7E-27 171.9 13.3 140 41-202 103-257 (299)
26 cd07067 HP_PGM_like Histidine 99.9 3.6E-21 7.9E-26 146.4 12.6 109 42-201 1-123 (153)
27 cd07040 HP Histidine phosphata 99.8 4.6E-18 1E-22 128.6 12.9 106 42-201 1-123 (153)
28 TIGR00249 sixA phosphohistidin 99.7 6.6E-17 1.4E-21 123.6 13.5 114 41-199 1-122 (152)
29 PRK06193 hypothetical protein; 99.7 1.3E-16 2.8E-21 127.1 13.1 119 40-198 42-176 (206)
30 PRK10848 phosphohistidine phos 99.7 4.5E-16 9.8E-21 119.8 12.8 114 41-199 1-122 (159)
31 KOG4754|consensus 99.7 3.1E-16 6.7E-21 123.0 11.4 153 41-198 15-201 (248)
32 KOG3734|consensus 99.6 1.3E-15 2.8E-20 124.7 11.1 136 58-202 71-219 (272)
33 PRK15416 lipopolysaccharide co 99.6 8.4E-15 1.8E-19 115.9 12.7 112 40-201 54-175 (201)
34 COG2062 SixA Phosphohistidine 99.6 2.9E-14 6.2E-19 109.3 11.6 113 41-199 2-123 (163)
35 KOG4609|consensus 99.6 1.4E-14 3.1E-19 113.9 8.8 136 40-202 94-242 (284)
36 cd07061 HP_HAP_like Histidine 96.9 0.0025 5.3E-08 51.9 6.1 63 41-107 4-73 (242)
37 PF00328 His_Phos_2: Histidine 94.6 0.1 2.2E-06 43.9 6.5 48 58-107 64-116 (347)
38 PRK10172 phosphoanhydride phos 93.8 0.78 1.7E-05 40.9 10.4 48 58-107 74-130 (436)
39 PRK10173 glucose-1-phosphatase 92.9 0.49 1.1E-05 41.9 7.7 48 58-107 72-128 (413)
40 KOG3720|consensus 92.0 0.43 9.3E-06 42.3 6.2 48 58-107 72-127 (411)
41 KOG1057|consensus 91.1 0.26 5.6E-06 46.4 3.9 48 58-107 513-571 (1018)
42 PF12048 DUF3530: Protein of u 67.7 14 0.00031 31.4 5.6 42 160-201 174-216 (310)
43 PF09370 TIM-br_sig_trns: TIM- 63.9 4.6 9.9E-05 33.6 1.8 36 155-190 190-225 (268)
44 COG2247 LytB Putative cell wal 61.9 36 0.00078 29.2 6.7 98 86-190 30-144 (337)
45 PF02604 PhdYeFM_antitox: Anti 52.1 22 0.00048 22.9 3.3 30 158-187 5-34 (75)
46 TIGR00824 EIIA-man PTS system, 51.1 33 0.00072 24.5 4.3 32 153-185 35-66 (116)
47 TIGR01552 phd_fam prevent-host 44.8 50 0.0011 19.6 3.9 30 158-188 3-32 (52)
48 COG0693 ThiJ Putative intracel 44.3 39 0.00084 25.9 4.1 43 152-194 71-116 (188)
49 cd04256 AAK_P5CS_ProBA AAK_P5C 43.0 34 0.00074 28.7 3.8 31 161-191 31-61 (284)
50 PRK04946 hypothetical protein; 42.0 1E+02 0.0022 24.1 6.1 45 155-199 101-148 (181)
51 PF14606 Lipase_GDSL_3: GDSL-l 40.9 27 0.00058 27.3 2.6 31 157-187 71-103 (178)
52 PF01965 DJ-1_PfpI: DJ-1/PfpI 40.7 28 0.00062 25.7 2.7 38 152-189 42-83 (147)
53 smart00195 DSPc Dual specifici 40.5 74 0.0016 22.9 4.9 33 156-188 57-89 (138)
54 COG1134 TagH ABC-type polysacc 38.9 50 0.0011 27.3 4.0 28 160-187 180-207 (249)
55 TIGR01166 cbiO cobalt transpor 36.0 56 0.0012 25.0 3.8 27 161-187 161-187 (190)
56 PRK09177 xanthine-guanine phos 36.0 95 0.002 23.5 5.0 43 158-200 11-56 (156)
57 PTZ00393 protein tyrosine phos 35.2 1.1E+02 0.0023 25.3 5.3 40 152-191 144-184 (241)
58 KOG1250|consensus 33.7 3.5E+02 0.0077 24.2 9.9 85 16-114 51-143 (457)
59 KOG1382|consensus 33.5 80 0.0017 28.5 4.7 49 58-108 134-183 (467)
60 COG3845 ABC-type uncharacteriz 32.5 2.2E+02 0.0048 26.0 7.3 83 92-186 113-199 (501)
61 cd03216 ABC_Carb_Monos_I This 32.4 77 0.0017 23.8 4.0 27 162-188 117-143 (163)
62 PF01297 TroA: Periplasmic sol 30.8 2.8E+02 0.0061 22.3 7.4 49 60-117 183-231 (256)
63 cd03238 ABC_UvrA The excision 30.5 86 0.0019 24.2 4.0 28 162-189 124-151 (176)
64 cd07397 MPP_DevT Myxococcus xa 30.5 57 0.0012 26.7 3.1 34 156-190 126-159 (238)
65 PRK09191 two-component respons 30.1 2.5E+02 0.0055 22.1 6.9 42 156-197 115-157 (261)
66 PRK11780 isoprenoid biosynthes 30.0 79 0.0017 25.4 3.8 27 163-189 114-140 (217)
67 TIGR00960 3a0501s02 Type II (G 29.7 85 0.0018 24.5 4.0 27 162-188 173-199 (216)
68 TIGR02673 FtsE cell division A 29.3 86 0.0019 24.4 3.9 27 162-188 172-198 (214)
69 cd03292 ABC_FtsE_transporter F 29.2 85 0.0018 24.4 3.9 28 161-188 170-197 (214)
70 cd03226 ABC_cobalt_CbiO_domain 29.0 90 0.002 24.2 4.0 28 161-188 160-187 (205)
71 cd03235 ABC_Metallic_Cations A 28.8 88 0.0019 24.4 3.9 27 162-188 167-193 (213)
72 COG1121 ZnuC ABC-type Mn/Zn tr 28.8 74 0.0016 26.4 3.5 25 163-187 175-199 (254)
73 PF01715 IPPT: IPP transferase 28.6 1.1E+02 0.0024 25.1 4.6 38 157-194 36-74 (253)
74 cd03230 ABC_DR_subfamily_A Thi 28.6 89 0.0019 23.6 3.8 28 161-188 129-156 (173)
75 TIGR01189 ccmA heme ABC export 28.4 94 0.002 24.0 4.0 26 162-187 162-187 (198)
76 PRK13540 cytochrome c biogenes 28.3 93 0.002 24.1 3.9 28 161-188 161-188 (200)
77 PRK12314 gamma-glutamyl kinase 28.1 77 0.0017 26.2 3.6 27 162-188 32-58 (266)
78 cd03232 ABC_PDR_domain2 The pl 28.0 96 0.0021 23.9 4.0 27 161-187 142-168 (192)
79 cd03262 ABC_HisP_GlnQ_permease 28.0 94 0.002 24.1 3.9 28 161-188 169-196 (213)
80 cd03231 ABC_CcmA_heme_exporter 27.9 96 0.0021 24.0 4.0 27 161-187 159-185 (201)
81 COG2884 FtsE Predicted ATPase 27.7 1.3E+02 0.0028 24.3 4.5 34 156-189 166-199 (223)
82 COG1245 Predicted ATPase, RNas 27.6 1.2E+02 0.0025 27.9 4.6 47 149-195 233-281 (591)
83 COG1136 SalX ABC-type antimicr 27.6 1.1E+02 0.0024 24.8 4.3 32 161-192 176-208 (226)
84 PRK11614 livF leucine/isoleuci 27.2 97 0.0021 24.6 4.0 27 161-187 171-197 (237)
85 PRK13538 cytochrome c biogenes 27.0 1E+02 0.0022 23.9 4.0 26 163-188 165-190 (204)
86 PRK13543 cytochrome c biogenes 27.0 1E+02 0.0022 24.2 4.0 27 162-188 172-198 (214)
87 TIGR03608 L_ocin_972_ABC putat 26.9 1E+02 0.0022 23.8 3.9 29 161-189 168-196 (206)
88 PF00782 DSPc: Dual specificit 26.6 88 0.0019 22.2 3.3 32 157-188 53-84 (133)
89 cd03225 ABC_cobalt_CbiO_domain 26.5 1E+02 0.0022 23.9 3.9 27 162-188 169-195 (211)
90 PRK13539 cytochrome c biogenes 26.5 1E+02 0.0023 24.0 4.0 26 162-187 162-187 (207)
91 cd03229 ABC_Class3 This class 26.5 1E+02 0.0022 23.4 3.8 28 161-188 134-162 (178)
92 cd03133 GATase1_ES1 Type 1 glu 26.4 1.3E+02 0.0029 24.1 4.5 26 164-189 112-137 (213)
93 TIGR01978 sufC FeS assembly AT 26.3 97 0.0021 24.6 3.8 28 162-189 179-206 (243)
94 cd03246 ABCC_Protease_Secretio 26.3 1.1E+02 0.0024 23.0 4.0 26 163-188 132-157 (173)
95 PRK11409 antitoxin YefM; Provi 26.0 1.4E+02 0.0031 20.0 4.0 30 158-187 5-34 (83)
96 KOG1495|consensus 25.7 2.5E+02 0.0055 23.9 6.0 48 154-201 101-155 (332)
97 PRK09580 sufC cysteine desulfu 25.6 1.1E+02 0.0023 24.5 3.9 27 163-189 181-207 (248)
98 TIGR02324 CP_lyasePhnL phospho 25.3 1.1E+02 0.0024 24.0 4.0 29 161-189 183-211 (224)
99 cd03218 ABC_YhbG The ABC trans 25.3 1.1E+02 0.0024 24.1 3.9 26 162-187 168-193 (232)
100 cd03279 ABC_sbcCD SbcCD and ot 25.3 1.2E+02 0.0025 23.9 4.0 27 163-189 169-195 (213)
101 PRK11124 artP arginine transpo 25.2 1.1E+02 0.0024 24.4 3.9 29 161-189 175-203 (242)
102 cd03266 ABC_NatA_sodium_export 25.1 1.1E+02 0.0025 23.8 3.9 27 162-188 171-197 (218)
103 cd03255 ABC_MJ0796_Lo1CDE_FtsE 24.7 1.1E+02 0.0025 23.8 3.9 29 161-189 174-203 (218)
104 PF07431 DUF1512: Protein of u 24.6 58 0.0013 28.3 2.2 33 157-189 319-351 (355)
105 cd03219 ABC_Mj1267_LivG_branch 24.4 1.2E+02 0.0025 24.1 3.9 28 162-189 178-205 (236)
106 cd03148 GATase1_EcHsp31_like T 24.4 1E+02 0.0023 24.9 3.6 38 152-189 101-141 (232)
107 cd03215 ABC_Carb_Monos_II This 24.2 1.2E+02 0.0027 23.0 3.9 26 162-187 139-164 (182)
108 PF13479 AAA_24: AAA domain 24.2 1.3E+02 0.0028 23.8 4.0 32 156-187 105-137 (213)
109 PRK10908 cell division protein 24.0 1.2E+02 0.0027 23.7 4.0 27 162-188 172-198 (222)
110 cd03213 ABCG_EPDR ABCG transpo 24.0 1.3E+02 0.0027 23.3 4.0 26 162-187 146-171 (194)
111 TIGR03740 galliderm_ABC gallid 23.9 1.2E+02 0.0026 23.9 3.8 27 162-188 159-185 (223)
112 CHL00131 ycf16 sulfate ABC tra 23.8 1.2E+02 0.0026 24.3 4.0 27 163-189 187-213 (252)
113 cd03270 ABC_UvrA_I The excisio 23.8 1.2E+02 0.0026 24.1 3.9 28 162-189 174-201 (226)
114 TIGR03771 anch_rpt_ABC anchore 23.7 1.2E+02 0.0027 23.9 3.9 27 162-188 148-174 (223)
115 cd03224 ABC_TM1139_LivF_branch 23.6 1.3E+02 0.0027 23.6 3.9 27 162-188 167-193 (222)
116 TIGR01618 phage_P_loop phage n 23.6 1.2E+02 0.0026 24.5 3.8 33 155-187 111-143 (220)
117 PRK04155 chaperone protein Hch 23.3 1E+02 0.0022 26.0 3.4 37 152-188 152-191 (287)
118 cd03269 ABC_putative_ATPase Th 23.3 1.2E+02 0.0027 23.5 3.8 28 162-189 163-190 (210)
119 PRK09493 glnQ glutamine ABC tr 23.2 1.3E+02 0.0028 24.0 3.9 28 162-189 171-198 (240)
120 cd03268 ABC_BcrA_bacitracin_re 22.9 1.3E+02 0.0027 23.4 3.8 28 162-189 161-188 (208)
121 PRK10619 histidine/lysine/argi 22.9 1.3E+02 0.0028 24.3 3.9 28 162-189 187-214 (257)
122 PF02450 LCAT: Lecithin:choles 22.9 1.1E+02 0.0024 26.8 3.7 30 158-187 98-128 (389)
123 COG4359 Uncharacterized conser 22.8 1.3E+02 0.0028 24.0 3.7 33 167-199 79-113 (220)
124 TIGR03873 F420-0_ABC_ATP propo 22.5 1.3E+02 0.0029 24.2 4.0 28 161-188 171-198 (256)
125 PRK11231 fecE iron-dicitrate t 22.4 1.3E+02 0.0029 24.2 4.0 28 161-188 172-199 (255)
126 PF04101 Glyco_tran_28_C: Glyc 22.3 58 0.0013 24.3 1.7 20 181-200 75-94 (167)
127 COG5564 Predicted TIM-barrel e 22.3 72 0.0016 26.1 2.2 36 156-191 197-232 (276)
128 PRK13643 cbiO cobalt transport 22.0 1.3E+02 0.0029 24.9 3.9 27 162-188 179-205 (288)
129 cd03257 ABC_NikE_OppD_transpor 21.9 1.3E+02 0.0027 23.7 3.6 28 161-188 179-207 (228)
130 cd01017 AdcA Metal binding pro 21.8 4.3E+02 0.0093 21.7 6.9 47 58-113 202-248 (282)
131 PRK10895 lipopolysaccharide AB 21.7 1.4E+02 0.003 23.8 3.9 25 163-187 173-197 (241)
132 PRK03695 vitamin B12-transport 21.7 1.4E+02 0.0031 24.0 4.0 27 162-188 168-194 (248)
133 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 21.7 1.4E+02 0.0031 23.5 3.9 27 162-188 177-203 (224)
134 cd03217 ABC_FeS_Assembly ABC-t 21.6 1.5E+02 0.0033 22.9 4.0 28 162-189 139-166 (200)
135 PRK11264 putative amino-acid A 21.5 1.4E+02 0.0031 23.8 3.9 26 163-188 180-205 (250)
136 PRK15056 manganese/iron transp 21.4 1.4E+02 0.003 24.4 3.9 26 162-187 177-202 (272)
137 TIGR01092 P5CS delta l-pyrroli 21.3 1.3E+02 0.0027 28.9 4.0 28 162-189 30-57 (715)
138 cd03222 ABC_RNaseL_inhibitor T 21.3 1.6E+02 0.0035 22.7 4.0 27 163-189 107-134 (177)
139 PRK13649 cbiO cobalt transport 21.2 1.4E+02 0.0031 24.4 3.9 28 161-188 179-206 (280)
140 cd03214 ABC_Iron-Siderophores_ 21.1 1.4E+02 0.0031 22.6 3.7 29 161-189 131-160 (180)
141 PRK13651 cobalt transporter AT 20.9 1.4E+02 0.003 25.2 3.8 28 161-188 199-226 (305)
142 cd03147 GATase1_Ydr533c_like T 20.8 1.3E+02 0.0029 24.3 3.6 38 152-189 99-139 (231)
143 PF12843 DUF3820: Protein of u 20.8 1.3E+02 0.0029 19.5 2.8 37 120-163 14-50 (67)
144 PF01764 Lipase_3: Lipase (cla 20.7 3.1E+02 0.0068 19.3 5.3 36 162-197 46-85 (140)
145 cd03261 ABC_Org_Solvent_Resist 20.4 1.4E+02 0.0031 23.6 3.7 27 162-188 171-198 (235)
146 PRK13638 cbiO cobalt transport 20.4 1.6E+02 0.0034 24.1 4.0 27 162-188 171-197 (271)
147 cd03296 ABC_CysA_sulfate_impor 20.2 1.4E+02 0.0031 23.7 3.7 28 161-188 170-198 (239)
148 TIGR01188 drrA daunorubicin re 20.0 1.5E+02 0.0032 24.8 3.8 27 162-188 159-185 (302)
No 1
>PRK13463 phosphatase PhoE; Provisional
Probab=100.00 E-value=1.3e-37 Score=248.71 Aligned_cols=154 Identities=21% Similarity=0.195 Sum_probs=143.6
Q ss_pred CeEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCC
Q psy18151 40 DKSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQV 108 (204)
Q Consensus 40 ~~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~ 108 (204)
.++|||||| +|.+|..++ |+.|++||+ .+++.|... +++.|||||+. ||+ ||++++...+
T Consensus 2 ~~~i~lvRHG~t~~n~~~~~~G~~d~~Lt~~G~~Qa~-~~~~~l~~~-------~~~~i~sSpl~-Ra~qTA~~i~~~~~ 72 (203)
T PRK13463 2 KTTVYVTRHGETEWNVAKRMQGRKNSALTENGILQAK-QLGERMKDL-------SIHAIYSSPSE-RTLHTAELIKGERD 72 (203)
T ss_pred ceEEEEEeCCCCccchhCcccCCCCCCcCHHHHHHHH-HHHHHhcCC-------CCCEEEECCcH-HHHHHHHHHHhcCC
Confidence 478999999 999997653 999999999 999999887 89999999999 999 9999998888
Q ss_pred CCeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc--CCCeEEEEeCh
Q psy18151 109 IWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHP 186 (204)
Q Consensus 109 ~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~--~~~~ilvVsHg 186 (204)
+++.++++|+|+++|.|+|++..++.+.+|+.+..|+.++..+.+|+|||+.++.+|+..+++++.+ .+++|+|||||
T Consensus 73 ~~~~~~~~l~E~~~G~~eG~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~l~~i~~~~~~~~vlvVsHg 152 (203)
T PRK13463 73 IPIIADEHFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLEKHKGESILIVSHA 152 (203)
T ss_pred CCceECcCceeCCCCccCCCcHHHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHHHHHHHHHHHhCCCCEEEEEeCh
Confidence 9999999999999999999999999999999999999998888999999999999999999999853 46799999999
Q ss_pred HHHHHHHHHhhCCCCC
Q psy18151 187 AVLRCLLGYFQEEPPD 202 (204)
Q Consensus 187 ~~i~~ll~~l~~~~~~ 202 (204)
++|++++++++|.+++
T Consensus 153 ~~ir~~~~~~~~~~~~ 168 (203)
T PRK13463 153 AAAKLLVGHFAGIEIE 168 (203)
T ss_pred HHHHHHHHHHhCCCHH
Confidence 9999999999998864
No 2
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=100.00 E-value=1.7e-37 Score=285.62 Aligned_cols=179 Identities=24% Similarity=0.345 Sum_probs=162.6
Q ss_pred eeeeechhhhhhhhHHhhhhhccccccCCCCCCCeEEEEEcC-CCCCCCCCC-------CHhhHHHHHHHHHHHHHhhhh
Q psy18151 7 HFEVNICKSFVQEQVFSSSSEFGLKSSLGRPGLDKSFYGDRH-RSEYNSPST-------IPFVIRYCGRPLKAVVQSEIN 78 (204)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~lvRH-~t~~n~~~~-------t~~G~~qa~~~l~~~l~~~~~ 78 (204)
.+.+++++|||++++++||||+++. +++|||+|| ||.+|..++ |+.|++||+ .++++|+..
T Consensus 394 ~~~~~~i~g~l~~~i~~~l~n~~~~--------~m~i~LiRHGeT~~n~~~r~~Gd~pLt~~G~~qA~-~l~~~l~~~-- 462 (664)
T PTZ00322 394 TFSLNNISGWMPSRLAYMLHNLNPT--------PMNLYLTRAGEYVDLLSGRIGGNSRLTERGRAYSR-ALFEYFQKE-- 462 (664)
T ss_pred EEEEeccccccchhhheeeeeeccC--------CceEEEEecccchhhhcCccCCCCccCHHHHHHHH-HHHHHHHhc--
Confidence 3577899999999999999999988 678999999 999998776 999999999 999999864
Q ss_pred hcCCCCCCEEEEeCchHHHH-HHHHHhcc-----------------CCCCeeEcCCeeeeeCcccCCCCHHHHHHhCHHH
Q psy18151 79 SILPLKPLKKWEITYQVRTE-SVVNINHK-----------------QVIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQ 140 (204)
Q Consensus 79 ~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~-----------------~~~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~ 140 (204)
....++.|||||+. ||+ ||+++++. +++++..+++|+|+++|.|||++++++.+.+|+.
T Consensus 463 --~~~~~~~V~sSpl~-Ra~~TA~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~L~Ei~fG~wEG~t~~ei~~~~p~~ 539 (664)
T PTZ00322 463 --ISTTSFTVMSSCAK-RCTETVHYFAEESILQQSTASAASSQSPSLNCRVLYFPTLDDINHGDCEGQLLSDVRRTMPNT 539 (664)
T ss_pred --cCCCCcEEEcCCcH-HHHHHHHHHHhccccccccccccccccccccccccchhhhCcCCCcccCCCCHHHHHHhCcHH
Confidence 11256899999999 999 99999753 4667889999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCHHHHH-HHHHHHHHHhhcCCCeEEEEeChHHHHHHHHHhhCC
Q psy18151 141 YIDTRADKFYNRWPQGECYKDVL-TRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEE 199 (204)
Q Consensus 141 ~~~~~~~~~~~~~p~gEs~~~~~-~R~~~~l~~l~~~~~~ilvVsHg~~i~~ll~~l~~~ 199 (204)
+..|..+++.+.+|+|||+.|+. .|+..++.++.+..++|||||||++|++++++++|.
T Consensus 540 ~~~~~~d~~~~~~P~GES~~d~~~~R~~~~i~~l~~~~~~ilvVsHg~vir~ll~~~~~~ 599 (664)
T PTZ00322 540 LQSMKADPYYTAWPNGECIHQVFNARLEPHIHDIQASTTPVLVVSHLHLLQGLYSYFVTD 599 (664)
T ss_pred HHHHHhCCCcCCCCCCcCHHHHHHHHHHHHHHHHHccCCCEEEEeCcHHHHHHHHHHhcC
Confidence 99999999999999999999976 799999999977668999999999999999999996
No 3
>PRK01295 phosphoglyceromutase; Provisional
Probab=100.00 E-value=3.5e-36 Score=240.97 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=138.1
Q ss_pred CCeEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccC
Q psy18151 39 LDKSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQ 107 (204)
Q Consensus 39 ~~~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~ 107 (204)
|+++|||||| +|.+|..++ |+.|++||+ .+++.|++. ..+++.|||||+. ||+ ||++|++.+
T Consensus 1 ~~~~i~LVRHGet~~n~~~~~~G~~d~~Lt~~G~~qA~-~~~~~L~~~-----~~~~d~i~sSpl~-Ra~qTA~~i~~~~ 73 (206)
T PRK01295 1 MSRTLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAK-AAGRKLKAA-----GLKFDIAFTSALS-RAQHTCQLILEEL 73 (206)
T ss_pred CCceEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHH-HHHHHHHhC-----CCCCCEEEeCCcH-HHHHHHHHHHHHc
Confidence 5688999999 999986553 999999999 999999864 3479999999999 999 999999877
Q ss_pred C---CCeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHH-HHhh---cCCCeE
Q psy18151 108 V---IWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELII-LKIE---HSKSNL 180 (204)
Q Consensus 108 ~---~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l-~~l~---~~~~~i 180 (204)
+ +++.++++|+|+++|.|+|++.+++++.+|..+..++.++..+.+|+|||+.++.+|+..++ +.+. ..+++|
T Consensus 74 ~~~~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~v 153 (206)
T PRK01295 74 GQPGLETIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILPRVLRGERV 153 (206)
T ss_pred CCCCCCeEECCcccccccccccCCcHHHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHHHHHHHHHHHHhccCCCeE
Confidence 5 78999999999999999999999999999887666556666788999999999999999974 5553 256899
Q ss_pred EEEeChHHHHHHHHHhhCCCCC
Q psy18151 181 LIVSHPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 181 lvVsHg~~i~~ll~~l~~~~~~ 202 (204)
||||||++|++++++++|++++
T Consensus 154 liVtHg~~ir~l~~~~l~~~~~ 175 (206)
T PRK01295 154 LVAAHGNSLRALVMVLDGLTPE 175 (206)
T ss_pred EEEcChHHHHHHHHHHhCCCHH
Confidence 9999999999999999999864
No 4
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=100.00 E-value=2.4e-36 Score=240.53 Aligned_cols=152 Identities=18% Similarity=0.168 Sum_probs=141.2
Q ss_pred eEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCCC
Q psy18151 41 KSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQVI 109 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~~ 109 (204)
|+|||||| +|.+|..++ |+.|++||+ .+++.|+.. ++++|||||+. ||+ ||+++++..++
T Consensus 1 ~~i~lvRHG~t~~n~~~~~~G~~d~pLt~~G~~Qa~-~~~~~l~~~-------~~~~i~sSpl~-Ra~qTA~~i~~~~~~ 71 (199)
T PRK15004 1 MRLWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQ-NLHTLLRDV-------PFDLVLCSELE-RAQHTARLVLSDRQL 71 (199)
T ss_pred CeEEEEeCCCCccccCCcEeCCCCCCcCHHHHHHHH-HHHHHHhCC-------CCCEEEECchH-HHHHHHHHHHhcCCC
Confidence 47999999 999997654 999999999 999999887 89999999999 999 99999998899
Q ss_pred CeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc--CCCeEEEEeChH
Q psy18151 110 WVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPA 187 (204)
Q Consensus 110 ~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~--~~~~ilvVsHg~ 187 (204)
++.++++|+|+++|.|+|++..++...+|+.+..|..++....+|+|||+.++..|+..+++++.+ .+++|||||||+
T Consensus 72 ~~~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~l~~l~~~~~~~~iliVsHg~ 151 (199)
T PRK15004 72 PVHIIPELNEMFFGDWEMRHHRDLMQEDAENYAAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSAFQHYQNLLIVSHQG 151 (199)
T ss_pred CceeChhheeCCCcccCCCCHHHHHHHCHHHHHHHHhChhhcCCCCCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEcChH
Confidence 999999999999999999999999999999999998887777789999999999999999999964 467999999999
Q ss_pred HHHHHHHHhhCCCC
Q psy18151 188 VLRCLLGYFQEEPP 201 (204)
Q Consensus 188 ~i~~ll~~l~~~~~ 201 (204)
+|++++++++|.+.
T Consensus 152 ~i~~l~~~~~~~~~ 165 (199)
T PRK15004 152 VLSLLIARLLGMPA 165 (199)
T ss_pred HHHHHHHHHhCCCH
Confidence 99999999999875
No 5
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=5.2e-36 Score=243.43 Aligned_cols=155 Identities=17% Similarity=0.111 Sum_probs=134.3
Q ss_pred eEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCC-
Q psy18151 41 KSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQV- 108 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~- 108 (204)
++|||||| +|.+|..++ |+.|++||+ .+++.|+.. +.++|.|||||+. ||+ ||++|++..+
T Consensus 2 ~~l~LVRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~-~l~~~L~~~-----~~~~d~i~sSpL~-Ra~qTA~~i~~~~~~ 74 (228)
T PRK14116 2 AKLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAK-KAGRLIKEA-----GLEFDQAYTSVLT-RAIKTLHYALEESDQ 74 (228)
T ss_pred CEEEEEeCCCCCCccccCcCCCCCCCcCHHHHHHHH-HHHHHHHhc-----CCCCCEEEECChH-HHHHHHHHHHHhcCc
Confidence 68999999 999997765 999999999 999999863 3379999999999 999 9999986543
Q ss_pred --CCeeEcCCeeeeeCcccCCCCHHHHHHhCHHH-HHHHHhC------------------------CCCCCCCCCCCHHH
Q psy18151 109 --IWVDDHKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRAD------------------------KFYNRWPQGECYKD 161 (204)
Q Consensus 109 --~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~-~~~~~~~------------------------~~~~~~p~gEs~~~ 161 (204)
+++.++++|+|+++|.|||++.+++.+.+|+. +..|..+ ...+.+|+|||+.+
T Consensus 75 ~~~~~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs~~~ 154 (228)
T PRK14116 75 LWIPETKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGENLKV 154 (228)
T ss_pred CCCCcccCcccccccchhhcCCCHHHHHHHhhhhHHHHHhhcccccCcccccccccccccchhhhccCccCCCCCCCHHH
Confidence 67889999999999999999999999999886 5556543 11346799999999
Q ss_pred HHHHHHHHHHHhhc----CCCeEEEEeChHHHHHHHHHhhCCCCC
Q psy18151 162 VLTRLELIILKIEH----SKSNLLIVSHPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 162 ~~~R~~~~l~~l~~----~~~~ilvVsHg~~i~~ll~~l~~~~~~ 202 (204)
+.+|+..+++++.. .+++|||||||++|++++++++|++++
T Consensus 155 ~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~ll~~~~~~~~~ 199 (228)
T PRK14116 155 TLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRALTKYIENISDE 199 (228)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHHHHHHHhCCCHH
Confidence 99999999998641 468999999999999999999998863
No 6
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=2.9e-35 Score=239.11 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=133.5
Q ss_pred eEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccC--
Q psy18151 41 KSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQ-- 107 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~-- 107 (204)
++|||||| ||.+|..++ |+.|++||+ .+++.|+.. +.+++.|||||++ ||+ ||+++++..
T Consensus 2 ~~l~LvRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~-~l~~~L~~~-----~~~~d~i~sSpL~-Ra~~TA~~i~~~~~~ 74 (228)
T PRK14119 2 PKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEAT-RAGEKVREN-----NIAIDVAFTSLLT-RALDTTHYILTESKQ 74 (228)
T ss_pred CEEEEEeCCCCCcccCCCccCCCCCCcCHHHHHHHH-HHHHHHHhc-----CCCCCEEEeCccH-HHHHHHHHHHHhccc
Confidence 68999999 999997765 999999999 999999864 3379999999999 999 999998754
Q ss_pred -CCCeeEcCCeeeeeCcccCCCCHHHHHHhCHHH-HHHHHhCCCC------------------------CCCCCCCCHHH
Q psy18151 108 -VIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADKFY------------------------NRWPQGECYKD 161 (204)
Q Consensus 108 -~~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~-~~~~~~~~~~------------------------~~~p~gEs~~~ 161 (204)
++++..+++|+|+++|.|||++.+++.+++|+. +..|..+... ..+|+|||+.+
T Consensus 75 ~~~~~~~~~~LrE~~fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~ 154 (228)
T PRK14119 75 QWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKD 154 (228)
T ss_pred CCCCeeECCCccccccccccCCcHHHHHHHccHHHHHHHHcccccCCCcccccccccccccccccccccccCCCCCCHHH
Confidence 368899999999999999999999999999886 5566544211 23589999999
Q ss_pred HHHHHHHHHHHhh-c---CCCeEEEEeChHHHHHHHHHhhCCCCC
Q psy18151 162 VLTRLELIILKIE-H---SKSNLLIVSHPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 162 ~~~R~~~~l~~l~-~---~~~~ilvVsHg~~i~~ll~~l~~~~~~ 202 (204)
+.+|+..+++++. . .+++|||||||++|++++++++|++++
T Consensus 155 ~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~vir~l~~~~~~~~~~ 199 (228)
T PRK14119 155 TLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDE 199 (228)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEEeChHHHHHHHHHHhCCCHH
Confidence 9999999999973 2 467999999999999999999998753
No 7
>PRK01112 phosphoglyceromutase; Provisional
Probab=100.00 E-value=4.1e-35 Score=238.06 Aligned_cols=153 Identities=16% Similarity=0.103 Sum_probs=136.7
Q ss_pred eEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhcc---
Q psy18151 41 KSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHK--- 106 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~--- 106 (204)
++|||||| ||.+|..++ |+.|++||+ .+++.|+.. +++.|||||+. ||+ ||+.++..
T Consensus 2 ~~L~LvRHGqt~~n~~~~~~G~~D~~Lte~G~~Qa~-~l~~~L~~~-------~~d~iysSpl~-Ra~qTA~~i~~~~~~ 72 (228)
T PRK01112 2 ALLILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAI-AAGEKIKDL-------PIDCIFTSTLV-RSLMTALLAMTNHSS 72 (228)
T ss_pred cEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHH-HHHHHhhcC-------CCCEEEEcCcH-HHHHHHHHHHHhhcc
Confidence 68999999 999987554 999999999 999999987 89999999999 999 99999742
Q ss_pred --------------------------CCCCeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHH
Q psy18151 107 --------------------------QVIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYK 160 (204)
Q Consensus 107 --------------------------~~~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~ 160 (204)
..+++..+++|+|+++|.|+|++++++.+++|..+..|+.+++...+|+|||+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~GES~~ 152 (228)
T PRK01112 73 GKIPYIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPPQGESLE 152 (228)
T ss_pred cccccccccccccccccccccccccccCCCeeecCccccccccccCCCCHHHHHHHCcHHHHHHHhCcCCCCCCCCCCHH
Confidence 235788899999999999999999999999998777766767778899999999
Q ss_pred HHHHHHHHHHHHh-hc---CCCeEEEEeChHHHHHHHHHhhCCCCC
Q psy18151 161 DVLTRLELIILKI-EH---SKSNLLIVSHPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 161 ~~~~R~~~~l~~l-~~---~~~~ilvVsHg~~i~~ll~~l~~~~~~ 202 (204)
++..|+..+++++ .+ .+++|+|||||++|+++++++++++.+
T Consensus 153 d~~~Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~~~ll~~~~~ 198 (228)
T PRK01112 153 DTGQRTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDLEKLSEE 198 (228)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhCCCHH
Confidence 9999999999975 22 568999999999999999999998864
No 8
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=6.8e-35 Score=236.75 Aligned_cols=155 Identities=15% Similarity=0.030 Sum_probs=132.7
Q ss_pred eEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccC--
Q psy18151 41 KSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQ-- 107 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~-- 107 (204)
|+|||||| +|.+|..++ |+.|++||+ .+++.|... +.+++.|||||+. ||+ ||+.|++..
T Consensus 1 m~l~LvRHG~t~~n~~~~~~G~~d~~Lt~~G~~qa~-~~~~~l~~~-----~~~~d~i~sSpl~-Ra~~TA~~i~~~~~~ 73 (227)
T PRK14118 1 MELVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAK-AAGKKLKEA-----GYEFDIAFTSVLT-RAIKTCNIVLEESNQ 73 (227)
T ss_pred CEEEEEecCCCccccccCcCCCCCCCCCHHHHHHHH-HHHHHHHhc-----CCCCCEEEEeChH-HHHHHHHHHHHhcCC
Confidence 47999999 999997764 999999999 999999863 3379999999999 999 999998754
Q ss_pred -CCCeeEcCCeeeeeCcccCCCCHHHHHHhCHHH-HHHHHhCCC------------------------CCCCCCCCCHHH
Q psy18151 108 -VIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADKF------------------------YNRWPQGECYKD 161 (204)
Q Consensus 108 -~~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~-~~~~~~~~~------------------------~~~~p~gEs~~~ 161 (204)
++++..+++|+|+++|.|||++.+++.+.+|+. +..|..+.. ...+|+|||+.+
T Consensus 74 ~~~~~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~ 153 (227)
T PRK14118 74 LWIPQVKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENLKV 153 (227)
T ss_pred CCCCeecCCccccccCccccCCcHHHHHHHhhHHHHHHHHhccccCCCccccccccccccchhhccCcCCCCCCCCCHHH
Confidence 367889999999999999999999999999876 445544311 135689999999
Q ss_pred HHHHHHHHHHHhhc----CCCeEEEEeChHHHHHHHHHhhCCCCC
Q psy18151 162 VLTRLELIILKIEH----SKSNLLIVSHPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 162 ~~~R~~~~l~~l~~----~~~~ilvVsHg~~i~~ll~~l~~~~~~ 202 (204)
+.+|+.++++++.. .+++|||||||++|++++++++|.+++
T Consensus 154 ~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~ll~~~l~~~~~ 198 (227)
T PRK14118 154 TLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRALAKHIEGISDA 198 (227)
T ss_pred HHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHHHHHHHhCCCHH
Confidence 99999999998742 468999999999999999999998753
No 9
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=100.00 E-value=5.3e-35 Score=228.23 Aligned_cols=150 Identities=20% Similarity=0.222 Sum_probs=137.9
Q ss_pred EEEEcC-CCCCCCCCC--------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCCCCee
Q psy18151 43 FYGDRH-RSEYNSPST--------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQVIWVD 112 (204)
Q Consensus 43 i~lvRH-~t~~n~~~~--------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~~~v~ 112 (204)
|||||| ||.+|..++ |+.|++||+ .+++.|+.. +++.|||||+. ||+ ||++++..+++++.
T Consensus 1 i~lvRHg~t~~n~~~~~g~~d~~Lt~~G~~qa~-~l~~~l~~~-------~~~~i~sSpl~-Ra~qTA~~i~~~~~~~~~ 71 (177)
T TIGR03162 1 LYLIRHGETDVNAGLCYGQTDVPLAEKGAEQAA-ALREKLADV-------PFDAVYSSPLS-RCRELAEILAERRGLPII 71 (177)
T ss_pred CEEEeCCCCccCCCceeCCCCCCcChhHHHHHH-HHHHHhcCC-------CCCEEEECchH-HHHHHHHHHHhhcCCCce
Confidence 699999 999986532 999999999 999999876 89999999999 999 99999999899999
Q ss_pred EcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc--CCCeEEEEeChHHHH
Q psy18151 113 DHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPAVLR 190 (204)
Q Consensus 113 ~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~--~~~~ilvVsHg~~i~ 190 (204)
++++|+|+++|.|+|++.+++.+.+| .+..|..++..+.+|+|||+.++.+|+.++++++.+ .+++|||||||++|+
T Consensus 72 ~~~~L~E~~~G~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~ 150 (177)
T TIGR03162 72 KDPRLREMDFGDWEGRSWDEIPEAYP-ELDAWAADWQHARPPGGESFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIR 150 (177)
T ss_pred ECCccccccCCccCCCCHHHHHHhCH-HHHHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHH
Confidence 99999999999999999999999998 577788887778899999999999999999999964 468999999999999
Q ss_pred HHHHHhhCCCCC
Q psy18151 191 CLLGYFQEEPPD 202 (204)
Q Consensus 191 ~ll~~l~~~~~~ 202 (204)
+++++++|.+++
T Consensus 151 ~l~~~~~~~~~~ 162 (177)
T TIGR03162 151 ALLAHLLGLPLE 162 (177)
T ss_pred HHHHHHhCCCHH
Confidence 999999998763
No 10
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=230.46 Aligned_cols=156 Identities=21% Similarity=0.237 Sum_probs=144.3
Q ss_pred CeEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCC
Q psy18151 40 DKSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQV 108 (204)
Q Consensus 40 ~~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~ 108 (204)
.++|||||| ||.+|..++ |+.|++||+ .+++.|... ..+++.|||||+. ||+ ||+++++.++
T Consensus 2 ~~~i~lvRHGqt~~n~~~~~~G~~d~pLt~~G~~QA~-~l~~~l~~~-----~~~~~~i~sS~l~-Ra~~TA~~~a~~~~ 74 (208)
T COG0406 2 MMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAE-ALAERLAAR-----DIGFDAIYSSPLK-RAQQTAEPLAEELG 74 (208)
T ss_pred ceEEEEEecCCccccccccccCCCCCCCCHHHHHHHH-HHHHHHhhc-----CCCCCEEEECchH-HHHHHHHHHHHhcC
Confidence 489999999 999986554 999999999 999999954 3389999999999 999 9999999999
Q ss_pred CCeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc--CCCeEEEEeCh
Q psy18151 109 IWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHP 186 (204)
Q Consensus 109 ~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~--~~~~ilvVsHg 186 (204)
.++..+++|+|+++|.|+|++.+++.+.+|..+..|..++..+.+|+|||+.++..|+..++.++.. .+++|+|||||
T Consensus 75 ~~~~~~~~l~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg 154 (208)
T COG0406 75 LPLEVDDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAELLRSPPGNNVLVVSHG 154 (208)
T ss_pred CCceecCCeeEeecccccCCcHHHHHHhCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEECh
Confidence 9999999999999999999999999999999999999999999999999999999999999999965 33379999999
Q ss_pred HHHHHHHHHhhCCCCC
Q psy18151 187 AVLRCLLGYFQEEPPD 202 (204)
Q Consensus 187 ~~i~~ll~~l~~~~~~ 202 (204)
++|++++++++|.+..
T Consensus 155 ~~ir~l~~~~~~~~~~ 170 (208)
T COG0406 155 GVIRALLAYLLGLDLE 170 (208)
T ss_pred HHHHHHHHHhcCCChh
Confidence 9999999999998753
No 11
>PRK03482 phosphoglycerate mutase; Provisional
Probab=100.00 E-value=1.3e-34 Score=233.14 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=132.9
Q ss_pred eEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCCC
Q psy18151 41 KSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQVI 109 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~~ 109 (204)
++|||||| ++.+|..++ |+.|++||+ .+++.|... +++.|||||+. ||+ ||+++++.+++
T Consensus 2 ~~i~lvRHG~t~~n~~~~~~g~~d~~Lt~~G~~qA~-~~~~~l~~~-------~~~~I~sSpl~-Ra~qTA~~i~~~~~~ 72 (215)
T PRK03482 2 LQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAM-QVAERAKEL-------GITHIISSDLG-RTRRTAEIIAQACGC 72 (215)
T ss_pred cEEEEEeCCCcccccccccCCCCCCCcCHHHHHHHH-HHHHHHhcC-------CCCEEEECCcH-HHHHHHHHHHHhcCC
Confidence 78999999 999987543 999999999 999999887 89999999999 999 99999999999
Q ss_pred CeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc--CCCeEEEEeChH
Q psy18151 110 WVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPA 187 (204)
Q Consensus 110 ~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~--~~~~ilvVsHg~ 187 (204)
++.++++|+|+++|.|+|++.+++....+.....+...+..+.+|+|||+.++.+|+..+++++.+ .+++|||||||+
T Consensus 73 ~~~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv~~~l~~~~~~~~~~~vliVsHg~ 152 (215)
T PRK03482 73 DIIFDPRLRELNMGVLEKRHIDSLTEEEEGWRRQLVNGTVDGRIPEGESMQELSDRMHAALESCLELPQGSRPLLVSHGI 152 (215)
T ss_pred CeeEChhccccCCccccCCcHHHHHhhHHHHHHhhhcCCCccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcH
Confidence 999999999999999999999987655433222233344556789999999999999999999853 457899999999
Q ss_pred HHHHHHHHhhCCCCC
Q psy18151 188 VLRCLLGYFQEEPPD 202 (204)
Q Consensus 188 ~i~~ll~~l~~~~~~ 202 (204)
+|++++++++|.+++
T Consensus 153 ~i~~l~~~l~~~~~~ 167 (215)
T PRK03482 153 ALGCLVSTILGLPAW 167 (215)
T ss_pred HHHHHHHHHhCCChh
Confidence 999999999998764
No 12
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=1.7e-34 Score=234.86 Aligned_cols=154 Identities=14% Similarity=0.049 Sum_probs=132.5
Q ss_pred eEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhc---c
Q psy18151 41 KSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINH---K 106 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~---~ 106 (204)
++|||||| +|.+|..++ |+.|++||+ .+++.|... +.+++.|||||+. ||+ ||++++. .
T Consensus 2 ~~l~LvRHG~t~~n~~~~~qG~~D~~Lt~~G~~qa~-~~~~~l~~~-----~~~~~~i~sSpl~-Ra~~TA~~i~~~~~~ 74 (230)
T PRK14117 2 VKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAI-DAGKLIKEA-----GIEFDLAFTSVLK-RAIKTTNLALEASDQ 74 (230)
T ss_pred CEEEEEeCccccCcccCCcCCCCCCCcCHHHHHHHH-HHHHHHHHc-----CCCCCEEEECCcH-HHHHHHHHHHHhccc
Confidence 68999999 999997764 999999999 999999863 3379999999999 999 9999863 3
Q ss_pred CCCCeeEcCCeeeeeCcccCCCCHHHHHHhCHHH-HHHHHhC------------------------CCCCCCCCCCCHHH
Q psy18151 107 QVIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRAD------------------------KFYNRWPQGECYKD 161 (204)
Q Consensus 107 ~~~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~-~~~~~~~------------------------~~~~~~p~gEs~~~ 161 (204)
.++++.++++|+|+++|.|||++.+++.+++|.. +..|..+ .....+|+|||+.+
T Consensus 75 ~~~~~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~ 154 (230)
T PRK14117 75 LWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLKV 154 (230)
T ss_pred CCCCceeCCccccccchhhcCCCHHHHHHHccHHHHHHHhcccccCCCcccccccccccccccccccccCCCCCCCCHHH
Confidence 4578999999999999999999999999999986 4456532 11236789999999
Q ss_pred HHHHHHHHHHHhh--c--CCCeEEEEeChHHHHHHHHHhhCCCC
Q psy18151 162 VLTRLELIILKIE--H--SKSNLLIVSHPAVLRCLLGYFQEEPP 201 (204)
Q Consensus 162 ~~~R~~~~l~~l~--~--~~~~ilvVsHg~~i~~ll~~l~~~~~ 201 (204)
+.+|+..+++++. . .+++|||||||++|++++++++|.++
T Consensus 155 ~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~~ir~ll~~~lg~~~ 198 (230)
T PRK14117 155 TLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKGLSD 198 (230)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEeChHHHHHHHHHHhCcCH
Confidence 9999999999973 2 35799999999999999999999875
No 13
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=100.00 E-value=2.3e-34 Score=229.91 Aligned_cols=150 Identities=16% Similarity=0.104 Sum_probs=133.8
Q ss_pred EEEEEcC-CCCCCCCCC----------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCCC
Q psy18151 42 SFYGDRH-RSEYNSPST----------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQVI 109 (204)
Q Consensus 42 ~i~lvRH-~t~~n~~~~----------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~~ 109 (204)
+|||||| ||.+|..++ |+.|++||+ .+++.|+.. +++.|||||+. ||+ ||+++++.+++
T Consensus 1 ~i~lvRHG~t~~n~~~~~~g~~~d~~Lt~~G~~qa~-~l~~~l~~~-------~~~~i~sSpl~-Ra~qTA~~i~~~~~~ 71 (204)
T TIGR03848 1 TVILVRHGRSTANTAGTLAGRTPGVDLDERGREQAA-ALAERLADL-------PIAAIVSSPLE-RCRETAEPIAEARGL 71 (204)
T ss_pred CEEEEeCCCCCccccccccCCCCCCCcCHHHHHHHH-HHHHHHhcC-------CCCEEEeCcHH-HHHHHHHHHHHhcCC
Confidence 4899999 999986542 999999999 999999887 89999999999 999 99999998899
Q ss_pred CeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc-------CCCeEEE
Q psy18151 110 WVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH-------SKSNLLI 182 (204)
Q Consensus 110 ~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~-------~~~~ilv 182 (204)
++.++++|+|+++|.|+|++.+++... ..+..|..++..+.+|+|||+.++..|+..+++++.+ .+++|||
T Consensus 72 ~~~~~~~L~E~~~G~~eG~~~~e~~~~--~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vli 149 (204)
T TIGR03848 72 PPRVDERLGECDYGDWTGRELKELAKE--PLWPVVQAHPSAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVA 149 (204)
T ss_pred CceECcccccCCCCeeCCcCHHHHhCc--HHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEE
Confidence 999999999999999999999998753 3456676777777889999999999999999998742 3568999
Q ss_pred EeChHHHHHHHHHhhCCCCC
Q psy18151 183 VSHPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 183 VsHg~~i~~ll~~l~~~~~~ 202 (204)
||||++|++++++++|.+++
T Consensus 150 VsHg~~ir~ll~~~lg~~~~ 169 (204)
T TIGR03848 150 CSHGDVIKSVLADALGMHLD 169 (204)
T ss_pred EeCChHHHHHHHHHhCCCHH
Confidence 99999999999999998764
No 14
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=100.00 E-value=6.7e-34 Score=233.17 Aligned_cols=155 Identities=18% Similarity=0.084 Sum_probs=133.3
Q ss_pred eEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCC-
Q psy18151 41 KSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQV- 108 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~- 108 (204)
|+|||||| ||.+|..++ |+.|++||+ .+++.|+.. +.++++|||||++ ||+ ||++|+..++
T Consensus 1 ~~l~lVRHGqt~~n~~~~~~G~~D~~Lt~~G~~QA~-~la~~L~~~-----~~~~d~iysSpl~-Ra~qTA~ii~~~~~~ 73 (245)
T TIGR01258 1 MKLVLVRHGESEWNALNLFTGWVDVKLSEKGQQEAK-RAGELLKEE-----GYEFDVAYTSLLK-RAIHTLNIALDELDQ 73 (245)
T ss_pred CEEEEEeCCCcCccccCCcCCCCCCCcCHHHHHHHH-HHHHHHHhc-----CCCCCEEEEcChH-HHHHHHHHHHHhcCC
Confidence 47999999 999997664 999999999 999999865 4478999999999 999 9999998776
Q ss_pred --CCeeEcCCeeeeeCcccCCCCHHHHHHhCHHH-HHHHHhCCC------------------C------CCCCCCCCHHH
Q psy18151 109 --IWVDDHKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADKF------------------Y------NRWPQGECYKD 161 (204)
Q Consensus 109 --~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~-~~~~~~~~~------------------~------~~~p~gEs~~~ 161 (204)
+++..+++|+|+++|.|+|++.+++...+|.. +..|..+.. . ..+|+|||+.+
T Consensus 74 ~~~~i~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~~~ 153 (245)
T TIGR01258 74 LWIPVKKSWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKD 153 (245)
T ss_pred CCCCeeeCcccccccCCCCcCCCHHHHHHHhhHHHHHHHHhhccCCCCcCCcccccccccChhhhcCCcccCCCCCCHHH
Confidence 67888999999999999999999999999875 445543211 1 13689999999
Q ss_pred HHHHHHHHHHHhh----cCCCeEEEEeChHHHHHHHHHhhCCCCC
Q psy18151 162 VLTRLELIILKIE----HSKSNLLIVSHPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 162 ~~~R~~~~l~~l~----~~~~~ilvVsHg~~i~~ll~~l~~~~~~ 202 (204)
+.+|+..+++++. .++++|||||||++|++++++++|++++
T Consensus 154 ~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~vir~l~~~l~~l~~~ 198 (245)
T TIGR01258 154 TIARVLPYWNDEIAPDLLSGKRVLIVAHGNSLRALVKHLEGISDE 198 (245)
T ss_pred HHHHHHHHHHHHHhhhhcCCCEEEEEcChHHHHHHHHHHHCcCHH
Confidence 9999999999974 2467999999999999999999998764
No 15
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=1.7e-33 Score=231.12 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=134.1
Q ss_pred CCeEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhcc-
Q psy18151 39 LDKSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHK- 106 (204)
Q Consensus 39 ~~~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~- 106 (204)
|.++|||||| +|.+|..++ |+.|++||+ .+++.|... +..++.|||||+. ||+ ||+++++.
T Consensus 3 ~m~~i~LVRHGqt~~n~~~~~~G~~D~pLTe~G~~QA~-~~a~~l~~~-----~~~~~~IysSpl~-Ra~qTA~~i~~~~ 75 (249)
T PRK14120 3 MTYTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAK-RGGELLAEA-----GVLPDVVYTSLLR-RAIRTANLALDAA 75 (249)
T ss_pred CCcEEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHH-HHHHHHHhc-----CCCCCEEEecChH-HHHHHHHHHHHhc
Confidence 3488999999 999987664 999999999 999999864 3478999999999 999 99999753
Q ss_pred --CCCCeeEcCCeeeeeCcccCCCCHHHHHHhCHHH-HHHHHhCCCCC----------------------CCCCCCCHHH
Q psy18151 107 --QVIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADKFYN----------------------RWPQGECYKD 161 (204)
Q Consensus 107 --~~~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~p~gEs~~~ 161 (204)
.++++.++++|+|+++|.|+|++..++.+++|.. +..|..+.... .+|+|||+.+
T Consensus 76 ~~~~~~i~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES~~~ 155 (249)
T PRK14120 76 DRLWIPVRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQDNDPRYADLGVGPRTECLKD 155 (249)
T ss_pred ccCCCCeEECCCcccccccccCCCCHHHHHHHccHHHHHHHHhccccCCCccccccccccccCccccccCCCCCCCCHHH
Confidence 3468899999999999999999999999999874 77776543221 1489999999
Q ss_pred HHHHHHHHHHHh--h--cCCCeEEEEeChHHHHHHHHHhhCCCCC
Q psy18151 162 VLTRLELIILKI--E--HSKSNLLIVSHPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 162 ~~~R~~~~l~~l--~--~~~~~ilvVsHg~~i~~ll~~l~~~~~~ 202 (204)
+.+|+..+++++ . ..+++|||||||++|++++++++|++++
T Consensus 156 ~~~Rv~~~l~~~~~~~~~~~~~iliVsHggvir~l~~~~~~~~~~ 200 (249)
T PRK14120 156 VVARFLPYWEDDIVPDLKAGKTVLIAAHGNSLRALVKHLDGISDE 200 (249)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEEeCHHHHHHHHHHHhCCCHH
Confidence 999999999984 2 2568999999999999999999998864
No 16
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=1.6e-33 Score=231.20 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=133.7
Q ss_pred eEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCC-
Q psy18151 41 KSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQV- 108 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~- 108 (204)
|+|||||| +|.+|..++ |+.|++||+ .+++.|+.. +.++++|||||+. ||+ ||++|++.++
T Consensus 1 ~~i~LVRHGqt~~n~~~~~~G~~D~pLte~G~~QA~-~la~~L~~~-----~~~~d~IysSpl~-Ra~qTA~~i~~~~~~ 73 (247)
T PRK14115 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAK-AAGKLLKEE-----GYTFDVAYTSVLK-RAIRTLWIVLDELDQ 73 (247)
T ss_pred CEEEEEECCCcccccccCcCCCCCCCcCHHHHHHHH-HHHHHHHhc-----CCCCCEEEEcCCH-HHHHHHHHHHHHcCC
Confidence 57999999 999987653 999999999 999999865 4478999999999 999 9999988776
Q ss_pred --CCeeEcCCeeeeeCcccCCCCHHHHHHhCHHH-HHHHHhCCC------------------------CCCCCCCCCHHH
Q psy18151 109 --IWVDDHKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADKF------------------------YNRWPQGECYKD 161 (204)
Q Consensus 109 --~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~-~~~~~~~~~------------------------~~~~p~gEs~~~ 161 (204)
+++..+++|+|+++|.|+|++.+++.+.+|.. +..|..+.. ...+|+|||+.+
T Consensus 74 ~~~~~~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~ 153 (247)
T PRK14115 74 MWLPVEKSWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKD 153 (247)
T ss_pred CCCCceECccccccccccccCCCHHHHHHHhhHHHHHHHhcccccCCCcccccccccccccchhhcccCCCCCCCCcHHH
Confidence 47899999999999999999999999999875 555644211 134789999999
Q ss_pred HHHHHHHHHHHhh----cCCCeEEEEeChHHHHHHHHHhhCCCCC
Q psy18151 162 VLTRLELIILKIE----HSKSNLLIVSHPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 162 ~~~R~~~~l~~l~----~~~~~ilvVsHg~~i~~ll~~l~~~~~~ 202 (204)
+..|+..+++++. ..+++|||||||++|+++++++++.+.+
T Consensus 154 ~~~Rv~~~l~~~i~~~~~~~~~vlvVtHggvir~l~~~ll~~~~~ 198 (247)
T PRK14115 154 TIARVLPYWNETIAPQLKSGKRVLIAAHGNSLRALVKYLDNISDE 198 (247)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEeChHHHHHHHHHHhCCCHH
Confidence 9999999999863 2568999999999999999999998764
No 17
>PRK13462 acid phosphatase; Provisional
Probab=100.00 E-value=7.4e-33 Score=221.25 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=124.8
Q ss_pred CeEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCC--EEEEeCchHHHH-HHHHHhcc
Q psy18151 40 DKSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPL--KKWEITYQVRTE-SVVNINHK 106 (204)
Q Consensus 40 ~~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~--~i~sSpl~~Ra~-TA~~i~~~ 106 (204)
.++|||||| ||++|..++ |+.|++||+ .+++.|+.. +++ .|||||+. ||+ ||+.+.
T Consensus 5 ~~~i~LvRHG~t~~n~~~~~~G~~d~pLt~~G~~QA~-~l~~~l~~~-------~~~~~~i~sSpl~-Ra~qTA~~i~-- 73 (203)
T PRK13462 5 NHRLLLLRHGETEWSKSGRHTGRTELELTETGRTQAE-LAGQALGEL-------ELDDPLVISSPRR-RALDTAKLAG-- 73 (203)
T ss_pred ccEEEEEeCCCCCcccCCCccCCCCCCCCHHHHHHHH-HHHHHHHhC-------CCCCCEEEECchH-HHHHHHHHhc--
Confidence 378999999 999997654 999999999 999999887 555 89999999 999 999882
Q ss_pred CCCCe-eEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc--CCCeEEEE
Q psy18151 107 QVIWV-DDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIV 183 (204)
Q Consensus 107 ~~~~v-~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~--~~~~ilvV 183 (204)
.++ .++++|+|+++|.|+|++..++.+.+|+ +..|. ..+|+|||+.++.+|+..+++++.+ .+++||||
T Consensus 74 --~~~~~~~~~LrE~~~G~~eG~~~~ei~~~~~~-~~~~~-----~~~p~gES~~~~~~Rv~~~l~~i~~~~~~~~vliV 145 (203)
T PRK13462 74 --LTVDEVSGLLAEWDYGSYEGLTTPQIRESEPD-WLVWT-----HGCPGGESVAQVNERADRAVALALEHMESRDVVFV 145 (203)
T ss_pred --CcccccCccccccCCccccCCcHHHHHHhCch-HHhhc-----CCCCCCccHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 333 6799999999999999999999998886 33342 2458999999999999999999854 46799999
Q ss_pred eChHHHHHHHHHhhCCCCC
Q psy18151 184 SHPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 184 sHg~~i~~ll~~l~~~~~~ 202 (204)
|||++|++++++++|.+++
T Consensus 146 sHg~vir~ll~~~l~~~~~ 164 (203)
T PRK13462 146 SHGHFSRAVITRWVELPLA 164 (203)
T ss_pred eCCHHHHHHHHHHhCCCHH
Confidence 9999999999999998864
No 18
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=100.00 E-value=4.4e-32 Score=234.89 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=140.6
Q ss_pred CeEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCC
Q psy18151 40 DKSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQV 108 (204)
Q Consensus 40 ~~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~ 108 (204)
.++|||||| ++.+|..++ |+.|++||+ .+++.|... . +++.|||||+. ||+ ||+.++..++
T Consensus 171 ~~~i~LvRHGet~~n~~~~~~g~~D~~Lt~~G~~QA~-~l~~~l~~~-----~-~~d~i~sSpl~-Ra~qTA~~i~~~~~ 242 (372)
T PRK07238 171 PTRLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAA-AAARYLAAR-----G-GIDAVVSSPLQ-RARDTAAAAAKALG 242 (372)
T ss_pred ceEEEEEeCCCCCcccCCeeeCCCCCCcCHHHHHHHH-HHHHHHhcc-----C-CCCEEEECChH-HHHHHHHHHHHhcC
Confidence 489999999 999987643 999999999 999999874 2 78999999999 999 9999999889
Q ss_pred CCeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc--CCCeEEEEeCh
Q psy18151 109 IWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHP 186 (204)
Q Consensus 109 ~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~--~~~~ilvVsHg 186 (204)
+++.++++|+|+++|.|+|++.+++.+.+|..+..|..++ .+.+|+|||+.++.+|+..+++++.. .+++|+|||||
T Consensus 243 ~~~~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~w~~~~-~~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~vlvVtHg 321 (372)
T PRK07238 243 LDVTVDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADT-SVAPPGGESFDAVARRVRRARDRLIAEYPGATVLVVSHV 321 (372)
T ss_pred CCcEECccceeCCCCccCCCCHHHHHHHCHHHHHHHHhCC-CCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEECh
Confidence 9999999999999999999999999999999999998776 56789999999999999999999954 46799999999
Q ss_pred HHHHHHHHHhhCCCCC
Q psy18151 187 AVLRCLLGYFQEEPPD 202 (204)
Q Consensus 187 ~~i~~ll~~l~~~~~~ 202 (204)
++|++++++++|.+++
T Consensus 322 ~~ir~ll~~~l~~~~~ 337 (372)
T PRK07238 322 TPIKTLLRLALDAGPG 337 (372)
T ss_pred HHHHHHHHHHhCCCHH
Confidence 9999999999998764
No 19
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.97 E-value=2e-31 Score=202.92 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=129.1
Q ss_pred EEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCCCC
Q psy18151 42 SFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQVIW 110 (204)
Q Consensus 42 ~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~~~ 110 (204)
+|||||| ++.+|..+. |+.|++||+ .+++.|.+. ..+++.|||||+. ||+ ||+.+++.++.+
T Consensus 1 ~i~liRHg~~~~n~~~~~~~~~d~~Lt~~G~~qA~-~~~~~l~~~-----~~~~~~i~~Sp~~-R~~qTA~~~~~~~~~~ 73 (158)
T PF00300_consen 1 RIYLIRHGESEFNAEGRVQGDSDPPLTERGREQAR-QLGEYLAER-----DIQIDVIYSSPLR-RCIQTAEIIAEGLGIE 73 (158)
T ss_dssp EEEEEE-S-BHHHHTTBCGTTSSTGBEHHHHHHHH-HHHHHHHHT-----TSSCSEEEEESSH-HHHHHHHHHHHHHTSE
T ss_pred CEEEEECCccccccCCCcCCCCCccccHHHHHHHH-hhccccccc-----ccCceEEecCCcc-hhhhhhchhhcccccc
Confidence 6999999 998754332 999999999 999999954 4499999999999 999 999999988899
Q ss_pred eeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhh---cCCCeEEEEeChH
Q psy18151 111 VDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIE---HSKSNLLIVSHPA 187 (204)
Q Consensus 111 v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~---~~~~~ilvVsHg~ 187 (204)
+.+++.|+|+++|.|+|.+..++...+|..+..|..+...+.+|+|||+.++..|+..+++.+. ..+++|+|||||+
T Consensus 74 ~~~~~~l~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg~ 153 (158)
T PF00300_consen 74 IIVDPRLREIDFGDWEGRPFDEIEEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRVKQFLDELIAYKRPGENVLIVSHGG 153 (158)
T ss_dssp EEEEGGGSCCGCGGGTTSBHHHHHHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-HH
T ss_pred cccccccccccchhhcccchhhHHhhhhcccchhhccccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEEecHH
Confidence 9999999999999999999999999999888899888888899999999999999999999997 3789999999999
Q ss_pred HHHHH
Q psy18151 188 VLRCL 192 (204)
Q Consensus 188 ~i~~l 192 (204)
+|++|
T Consensus 154 ~i~~~ 158 (158)
T PF00300_consen 154 FIRAL 158 (158)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99986
No 20
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.97 E-value=2.7e-30 Score=197.62 Aligned_cols=140 Identities=24% Similarity=0.194 Sum_probs=120.1
Q ss_pred EEEEEcC-CCCCCCCC-------C--CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCCCC
Q psy18151 42 SFYGDRH-RSEYNSPS-------T--IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQVIW 110 (204)
Q Consensus 42 ~i~lvRH-~t~~n~~~-------~--t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~~~ 110 (204)
+|||||| +|.+|..+ . |+.|++||+ .+++.|.... ..+++.|||||+. ||+ ||+++++.++.+
T Consensus 1 ~i~lvRHG~s~~n~~~~~~g~~d~~Lt~~G~~qa~-~~a~~l~~~~----~~~~~~i~sSpl~-Ra~qTa~~i~~~~~~~ 74 (155)
T smart00855 1 RLYLIRHGETEANREGRLTGWTDSPLTELGRAQAE-ALGELLASLG----RLRFDVIYSSPLL-RARETAEALAIALGLG 74 (155)
T ss_pred CEEEEeCCCCcccccCeEcCCCCCCCCHHHHHHHH-HHHHHHHhcc----CCCCCEEEeCchH-HHHHHHHHHHHhcCCC
Confidence 4899999 99988543 1 999999999 9999998631 2389999999999 999 999999888766
Q ss_pred eeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc----CCCeEEEEeCh
Q psy18151 111 VDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH----SKSNLLIVSHP 186 (204)
Q Consensus 111 v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~----~~~~ilvVsHg 186 (204)
+ .++.|+|+++|.|+|++..++...+|..+..| ..+.+|+|||+.++..|+..+++++.+ .+++|||||||
T Consensus 75 ~-~~~~L~E~~~G~~~g~~~~~~~~~~~~~~~~~----~~~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg 149 (155)
T smart00855 75 E-VDPRLRERDYGAWEGLTKEEERAKAWTRPADW----LGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHG 149 (155)
T ss_pred C-CChhhhhcccceecCCcHHHHHHHHHHHHhcc----CCCCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECC
Confidence 4 88999999999999999999888777655433 567889999999999999999999964 46799999999
Q ss_pred HHHHHH
Q psy18151 187 AVLRCL 192 (204)
Q Consensus 187 ~~i~~l 192 (204)
++|+++
T Consensus 150 ~~ir~~ 155 (155)
T smart00855 150 GVIRAL 155 (155)
T ss_pred cccccC
Confidence 999864
No 21
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.96 E-value=3.6e-28 Score=198.40 Aligned_cols=138 Identities=14% Similarity=0.180 Sum_probs=118.3
Q ss_pred CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCC---CCeeEcCCeeeeeCcccCCCCHHHH
Q psy18151 58 IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQV---IWVDDHKALDDIHAGICEGQTYTEI 133 (204)
Q Consensus 58 t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~---~~v~~~~~L~E~~~G~~eg~~~~~~ 133 (204)
|+.|++||+ .+++.|+.. +.++++|||||+. ||+ ||+++++.++ +++..+++|+|+++|.|+|++.+++
T Consensus 16 Te~G~~QA~-~l~~~L~~~-----~~~~d~iysSpl~-Ra~qTA~~i~~~~~~~~~~~~~~~~L~E~~~G~~EG~~~~ei 88 (236)
T PTZ00123 16 SEKGVQEAR-EAGKLLKEK-----GFRFDVVYTSVLK-RAIKTAWIVLEELGQLHVPVIKSWRLNERHYGALQGLNKSET 88 (236)
T ss_pred CHHHHHHHH-HHHHHHHhc-----CCCCCEEEECChH-HHHHHHHHHHHhcCCCCCCceeCchhhhcccccccCCCHHHH
Confidence 999999999 999999864 4489999999999 999 9999998765 5788999999999999999999999
Q ss_pred HHhCHHHHHHHHhCCCC-------------------------CCCCCCCCHHHHHHHHHHHHHHhh----cCCCeEEEEe
Q psy18151 134 YTNHCAQYIDTRADKFY-------------------------NRWPQGECYKDVLTRLELIILKIE----HSKSNLLIVS 184 (204)
Q Consensus 134 ~~~~~~~~~~~~~~~~~-------------------------~~~p~gEs~~~~~~R~~~~l~~l~----~~~~~ilvVs 184 (204)
.+.+|+.+..++...+. +.+|+|||+.++.+|+..+++++. ..+++|||||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~li~~~~~~~~~vliVs 168 (236)
T PTZ00123 89 AEKHGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIAPDILAGKKVLVAA 168 (236)
T ss_pred HHHccHHHHHHHhcccCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Confidence 99999874443332211 245799999999999999999863 2467999999
Q ss_pred ChHHHHHHHHHhhCCCCC
Q psy18151 185 HPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 185 Hg~~i~~ll~~l~~~~~~ 202 (204)
||++|++++++++|.+++
T Consensus 169 HG~vir~ll~~l~~~~~~ 186 (236)
T PTZ00123 169 HGNSLRALVKYLDKMSEE 186 (236)
T ss_pred CHHHHHHHHHHHhCCCHH
Confidence 999999999999998754
No 22
>KOG0235|consensus
Probab=99.95 E-value=1.2e-27 Score=190.05 Aligned_cols=156 Identities=20% Similarity=0.139 Sum_probs=139.0
Q ss_pred CeEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCC
Q psy18151 40 DKSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQV 108 (204)
Q Consensus 40 ~~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~ 108 (204)
..++++||| ||+||..++ |+.|.+||+ .+++.|... ...++.+||||+. ||+ ||+.+++..+
T Consensus 5 ~~~lvlvRHGes~wN~e~~~~G~~D~~Lte~G~~qA~-~~~~~l~~~-----~~~~~~~~tS~l~-RakqT~~~il~~~~ 77 (214)
T KOG0235|consen 5 TFRLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAK-AAAQRLKDL-----NIEFDVCYTSDLK-RAKQTAELILEELK 77 (214)
T ss_pred ceEEEEEecCchhhhhhCcccccccCccChhhHHHHH-HHHHHHHhc-----CCcccEEecCHHH-HHHHHHHHHHHhhc
Confidence 478999999 999998887 999999999 999999998 6678999999999 999 9999999887
Q ss_pred ---CCeeEcCCeeeeeCcccCCCCHHHHHHhCHHH--HHHHHhCC-CCCCCCCCCCHHHHHHHHHHHHHHhhc----CCC
Q psy18151 109 ---IWVDDHKALDDIHAGICEGQTYTEIYTNHCAQ--YIDTRADK-FYNRWPQGECYKDVLTRLELIILKIEH----SKS 178 (204)
Q Consensus 109 ---~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~--~~~~~~~~-~~~~~p~gEs~~~~~~R~~~~l~~l~~----~~~ 178 (204)
+|+..+.+|+|+++|.++|+...+..++++.+ +..|.... ....+|.|||..+...|+.+++++... .+.
T Consensus 78 ~~~~pv~~~~~L~ER~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~gk 157 (214)
T KOG0235|consen 78 QKKVPVLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAKESKEGK 157 (214)
T ss_pred cCCcceEechhhchhhhccccCccHHHHHHHcchhccccchhhccCCcCCCCCCccHHHHHHHHHHHHHHhhhhhhcCCc
Confidence 89999999999999999999999999999876 44554432 445678999999999999999998742 678
Q ss_pred eEEEEeChHHHHHHHHHhhCCCCC
Q psy18151 179 NLLIVSHPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 179 ~ilvVsHg~~i~~ll~~l~~~~~~ 202 (204)
+|+|++||.++|+++.++.|...+
T Consensus 158 ~Vli~aHGnsLR~i~~~l~g~s~~ 181 (214)
T KOG0235|consen 158 NVLIVAHGNSLRAIVKHLEGISDE 181 (214)
T ss_pred EEEEEcCcHHHHHHHHHHhcCCHh
Confidence 999999999999999999998754
No 23
>KOG0234|consensus
Probab=99.95 E-value=1.4e-27 Score=205.10 Aligned_cols=176 Identities=31% Similarity=0.540 Sum_probs=159.3
Q ss_pred eeeechhhhhhhhHHhhhhhccccccCCCCCCCeEEEEEcC-CCCCCCCCC-------CHhhHHHHHHHHHHHHHhhhhh
Q psy18151 8 FEVNICKSFVQEQVFSSSSEFGLKSSLGRPGLDKSFYGDRH-RSEYNSPST-------IPFVIRYCGRPLKAVVQSEINS 79 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~lvRH-~t~~n~~~~-------t~~G~~qa~~~l~~~l~~~~~~ 79 (204)
+.++++.||+.+++++|+||+++. +++|||.|| ++++|..++ ++.|.+.|+ .+..++.+.
T Consensus 215 ~~~~~i~~~l~srivy~lmN~~~~--------pR~i~l~r~geS~~n~~griggds~ls~~g~~ya~-~l~~f~~~~--- 282 (438)
T KOG0234|consen 215 IVVHNIEGYLQSRIVYYLMNIHTT--------PRTIYLTRHGESEFNVEGRIGGDSPLSERGSQYAK-SLIKFVEEQ--- 282 (438)
T ss_pred EEEecccceehhhhhhhhhccccC--------CceEEEEecCCCccccccccCCcccccHHHHHHHH-HHHHHHhhh---
Confidence 457889999999999999999988 899999999 999998866 999999999 999998876
Q ss_pred cCCCCCC-EEEEeCchHHHH-HHHHHhccCCCCeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCC
Q psy18151 80 ILPLKPL-KKWEITYQVRTE-SVVNINHKQVIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGE 157 (204)
Q Consensus 80 ~~~~~~~-~i~sSpl~~Ra~-TA~~i~~~~~~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gE 157 (204)
. ..+ .+|||++. ||+ ||+.+.... .+.....|+|++.|.|+|+++.++...+|.++.....+++.+++|+||
T Consensus 283 --~-~~dl~vwts~~~-rti~ta~~l~~~~--~~~~~~~Ldei~ag~~~g~t~eeI~~~~p~e~~~r~~dky~yry~~gE 356 (438)
T KOG0234|consen 283 --S-SSDLDVWTSQRK-RTIQTAEGLKLDY--SVEQWKALDEIDAGVCEGLTYEEIETNYPEEFALRDKDKYRYRYPGGE 356 (438)
T ss_pred --c-ccCceeccchHH-HHhhhHhhcCcch--hhhhHhhcCcccccccccccHHHHHHhCchhhhhccCCcceeecCCCC
Confidence 2 334 89999999 999 999544332 257788999999999999999999999999999988999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEEeChHHHHHHHHHhhCCCCC
Q psy18151 158 CYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 158 s~~~~~~R~~~~l~~l~~~~~~ilvVsHg~~i~~ll~~l~~~~~~ 202 (204)
|+.|+..|+++++-+++++.+ |+||||..+||+++.++++.+++
T Consensus 357 Sy~D~v~RlePvImElEr~~~-Vlvi~Hqavircll~Yf~~~~~~ 400 (438)
T KOG0234|consen 357 SYSDLVQRLEPVIMELERQEN-VLVITHQAVIRCLLAYFLNCSPV 400 (438)
T ss_pred CHHHHHHhhhhHhHhhhhccc-EEEEecHHHHHHHHHHHhcCCHh
Confidence 999999999999999998765 99999999999999999998864
No 24
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.93 E-value=4.7e-25 Score=172.81 Aligned_cols=153 Identities=21% Similarity=0.162 Sum_probs=135.3
Q ss_pred eEEEEEcC-CCCCCCCCC---------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccC--
Q psy18151 41 KSFYGDRH-RSEYNSPST---------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQ-- 107 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~---------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~-- 107 (204)
++++|+|| ||+||..++ |+.|+.||. ..|+.|++. +..+|.+|||-++ ||+ |..++.++.
T Consensus 2 ~~Lvl~RHGqSeWN~~NlFtGW~Dv~LtekG~~EA~-~ag~llk~~-----~~~~dia~TS~L~-RAi~T~~i~L~e~d~ 74 (230)
T COG0588 2 MKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAK-AAGKLLKEE-----GLEFDIAYTSVLK-RAIKTLNIVLEESDQ 74 (230)
T ss_pred ceEEEEecCchhhhhcCceeeeeecCcchhhHHHHH-HHHHHHHHc-----CCCcceeehHHHH-HHHHHHHHHhhhhcc
Confidence 68999999 999998887 999999999 999999997 6799999999999 999 999998876
Q ss_pred -CCCeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHH-HHHhCCCCCCCC-------------------------CCCCHH
Q psy18151 108 -VIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYI-DTRADKFYNRWP-------------------------QGECYK 160 (204)
Q Consensus 108 -~~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~-~~~~~~~~~~~p-------------------------~gEs~~ 160 (204)
.+|+....+|+|.++|.+.|+...+..++|.++.- .|.+ .+...|| .+||..
T Consensus 75 ~~ipv~kswrLNERhYG~LqGlnK~~t~~kyGeeqv~~wRR-sydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLk 153 (230)
T COG0588 75 LWIPVIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRR-SYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLK 153 (230)
T ss_pred cCcchhhHHHhhhhhhhhhhcCChHHHHHHHhHHHHHHHHH-hcCCCCCCcccccccccccccccccccccCCCccchHH
Confidence 67899999999999999999999999999987644 4544 3344444 349999
Q ss_pred HHHHHHHHHHHHhh----cCCCeEEEEeChHHHHHHHHHhhCCCC
Q psy18151 161 DVLTRLELIILKIE----HSKSNLLIVSHPAVLRCLLGYFQEEPP 201 (204)
Q Consensus 161 ~~~~R~~~~l~~l~----~~~~~ilvVsHg~~i~~ll~~l~~~~~ 201 (204)
++.+|+.++++... ..+++|+|++||.++|+|+.++.|++-
T Consensus 154 dt~~Rv~Pyw~~~I~p~l~~Gk~VlI~AHGNSlRaLiK~L~~iSd 198 (230)
T COG0588 154 DTVERVLPYWEDDIAPNLKSGKNVLIVAHGNSLRALIKYLEGISD 198 (230)
T ss_pred HHHHHhhHHHHHHhhHHHhCCCeEEEEecchhHHHHHHHHhCCCH
Confidence 99999999999874 378999999999999999999999874
No 25
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.89 E-value=7.9e-23 Score=171.93 Aligned_cols=140 Identities=15% Similarity=0.082 Sum_probs=104.7
Q ss_pred eEEEEEcC-CCCCCC---CC---CCHhhHHHHHHHHHHHHHhhhhh-cCCCCCCEEEEeCchHHHH-HHHHHhccC-CCC
Q psy18151 41 KSFYGDRH-RSEYNS---PS---TIPFVIRYCGRPLKAVVQSEINS-ILPLKPLKKWEITYQVRTE-SVVNINHKQ-VIW 110 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~---~~---~t~~G~~qa~~~l~~~l~~~~~~-~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~-~~~ 110 (204)
++|||||| |+.++. .. .|+.|++||+ .+|+.|++...+ ..+.++++||||||. ||+ ||++|++.. +++
T Consensus 103 ~~L~LVRHGq~~~~~~~d~~~~~LTe~G~~QA~-~lg~~L~~~~~~~~~~~~~d~IysSPL~-RA~qTAeiIa~~~~~~~ 180 (299)
T PTZ00122 103 RQIILVRHGQYINESSNDDNIKRLTELGKEQAR-ITGKYLKEQFGEILVDKKVKAIYHSDMT-RAKETAEIISEAFPGVR 180 (299)
T ss_pred eEEEEEECCCCCCCCCCCcccCCCCHHHHHHHH-HHHHHHHHhhccccccCCCCEEEEcCcH-HHHHHHHHHHHhCCCCC
Confidence 88999999 976431 11 3999999999 999999874100 001178999999999 999 999999876 588
Q ss_pred eeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc-----CCCeEEEEeC
Q psy18151 111 VDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH-----SKSNLLIVSH 185 (204)
Q Consensus 111 v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~-----~~~~ilvVsH 185 (204)
+..+++|+|. ++..+. | ....+.++++|+ .+..+|+.++++++.. .++++|||||
T Consensus 181 v~~d~~LrEG-------~~~~~~----~--------~~~~~~~~gee~-~~~~~Rv~~al~~i~~r~~~~~~~~vLVVsH 240 (299)
T PTZ00122 181 LIEDPNLAEG-------VPCAPD----P--------PSRGFKPTIEEI-LEDMKRIEAAFEKYFHRPVEDEDSVEIIVCH 240 (299)
T ss_pred ceeCcccccC-------CccccC----c--------cccccCCCcchH-HHHHHHHHHHHHHHHHhcccCCCCeEEEEeC
Confidence 9999999992 222110 1 011234555666 6669999999999853 2357899999
Q ss_pred hHHHHHHHHHhhCCCCC
Q psy18151 186 PAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 186 g~~i~~ll~~l~~~~~~ 202 (204)
|++|+++++.++|.|++
T Consensus 241 GgvIR~ll~~lLglp~~ 257 (299)
T PTZ00122 241 GNVIRYLVCRALQLPPE 257 (299)
T ss_pred ChHHHHHHHHHhCcCHH
Confidence 99999999999998753
No 26
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=99.86 E-value=3.6e-21 Score=146.36 Aligned_cols=109 Identities=23% Similarity=0.227 Sum_probs=95.8
Q ss_pred EEEEEcC-CCCCCCCC-------C--CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccC-CC
Q psy18151 42 SFYGDRH-RSEYNSPS-------T--IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQ-VI 109 (204)
Q Consensus 42 ~i~lvRH-~t~~n~~~-------~--t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~-~~ 109 (204)
+|||||| ++.+|..+ + |+.|++||+ .+++.|... ..+++.|||||+. ||+ ||+++++.+ +.
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~-~~~~~l~~~-----~~~~~~i~~Sp~~-Ra~qTa~~l~~~~~~~ 73 (153)
T cd07067 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQAR-ALGKRLKEL-----GIKFDRIYSSPLK-RAIQTAEIILEELPGL 73 (153)
T ss_pred CEEEEECCCCcccccCcccCCCCCCCCHHHHHHHH-HHHHHHHhc-----CCCCCEEEECcHH-HHHHHHHHHHHhcCCC
Confidence 4899999 99887543 1 999999999 999999886 4579999999999 999 999999987 77
Q ss_pred CeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc--CCCeEEEEeChH
Q psy18151 110 WVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPA 187 (204)
Q Consensus 110 ~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~--~~~~ilvVsHg~ 187 (204)
++..++.|+| .|+..+++++.+ .+++|+|||||+
T Consensus 74 ~~~~~~~L~e--------------------------------------------~R~~~~~~~l~~~~~~~~iliV~H~~ 109 (153)
T cd07067 74 PVEVDPRLRE--------------------------------------------ARVLPALEELIAPHDGKNVLIVSHGG 109 (153)
T ss_pred CceeCccchH--------------------------------------------HHHHHHHHHHHHhCCCCeEEEEeChH
Confidence 8888888888 788888888865 478999999999
Q ss_pred HHHHHHHHhhCCCC
Q psy18151 188 VLRCLLGYFQEEPP 201 (204)
Q Consensus 188 ~i~~ll~~l~~~~~ 201 (204)
+|+++++++++.+.
T Consensus 110 ~i~~~~~~l~~~~~ 123 (153)
T cd07067 110 VLRALLAYLLGLSD 123 (153)
T ss_pred HHHHHHHHHhCCCH
Confidence 99999999999764
No 27
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.78 E-value=4.6e-18 Score=128.55 Aligned_cols=106 Identities=20% Similarity=0.148 Sum_probs=88.0
Q ss_pred EEEEEcC-CCCCCCCC----C-----CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccC--C
Q psy18151 42 SFYGDRH-RSEYNSPS----T-----IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQ--V 108 (204)
Q Consensus 42 ~i~lvRH-~t~~n~~~----~-----t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~--~ 108 (204)
+|||+|| ++.++..+ . |+.|++||. .+++.|... ..+++.|||||+. ||+ ||+.++..+ +
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~-~l~~~l~~~-----~~~~~~v~sSp~~-R~~~Ta~~~~~~~~~~ 73 (153)
T cd07040 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQAR-ELGKALRER-----YIKFDRIYSSPLK-RAIQTAEIILEGLFEG 73 (153)
T ss_pred CEEEEeCCCCccccCCCccCCCCCCcCHHHHHHHH-HHHHHHHHh-----CCCCCEEEECChH-HHHHHHHHHHHHhcCC
Confidence 4899999 99887543 1 999999999 999999886 4479999999999 999 999999887 4
Q ss_pred CCeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc----CCCeEEEEe
Q psy18151 109 IWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH----SKSNLLIVS 184 (204)
Q Consensus 109 ~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~----~~~~ilvVs 184 (204)
.++..++. .|+..++.++.. .++++++||
T Consensus 74 ~~~~~~~~-----------------------------------------------~r~~~~~~~~~~~~~~~~~~iliv~ 106 (153)
T cd07040 74 LPVEVDPR-----------------------------------------------ARVLNALLELLARHLLDGKNVLIVS 106 (153)
T ss_pred CCeEECHH-----------------------------------------------HHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 44444333 777788887754 468999999
Q ss_pred ChHHHHHHHHHhhCCCC
Q psy18151 185 HPAVLRCLLGYFQEEPP 201 (204)
Q Consensus 185 Hg~~i~~ll~~l~~~~~ 201 (204)
||++|+.+++++++.+.
T Consensus 107 H~~~i~~~~~~l~~~~~ 123 (153)
T cd07040 107 HGGTIRALLAALLGLSD 123 (153)
T ss_pred CCHHHHHHHHHHhCcCH
Confidence 99999999999998763
No 28
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=99.74 E-value=6.6e-17 Score=123.58 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=83.2
Q ss_pred eEEEEEcC-CCCCCCCCC-----CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCCCCeeE
Q psy18151 41 KSFYGDRH-RSEYNSPST-----IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQVIWVDD 113 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~-----t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~~~v~~ 113 (204)
|+|||||| ++.++..+. |+.|++||+ .++++|+.. +..++.|||||+. ||+ ||+.+++.++.++.+
T Consensus 1 m~l~LvRHg~a~~~~~~d~dr~Lt~~G~~qa~-~~~~~l~~~-----~~~~d~i~sSp~~-Ra~qTa~~l~~~~~~~~~~ 73 (152)
T TIGR00249 1 MQLFIMRHGDAALDAASDSVRPLTTNGCDESR-LVAQWLKGQ-----GVEIERILVSPFV-RAEQTAEIVGDCLNLPSSA 73 (152)
T ss_pred CEEEEEeCCCcccccCCCCCCCcCHHHHHHHH-HHHHHHHhC-----CCCCCEEEECCcH-HHHHHHHHHHHHcCCCcce
Confidence 47999999 998765322 999999999 999999885 4478999999999 999 999999987653322
Q ss_pred cCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc-CCCeEEEEeChHHHHHH
Q psy18151 114 HKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH-SKSNLLIVSHPAVLRCL 192 (204)
Q Consensus 114 ~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~-~~~~ilvVsHg~~i~~l 192 (204)
+ . ++++ +|+ ++..++.. +++++.. ..++|+||+|+..+..+
T Consensus 74 ~-----~----~~~l------------------------~p~-~~~~~~~~----~l~~~~~~~~~~vliVgH~P~i~~l 115 (152)
T TIGR00249 74 E-----V----LEGL------------------------TPC-GDIGLVSD----YLEALTNEGVASVLLVSHLPLVGYL 115 (152)
T ss_pred E-----E----ccCc------------------------CCC-CCHHHHHH----HHHHHHhcCCCEEEEEeCCCCHHHH
Confidence 1 1 1111 121 33333333 3333332 45799999999999999
Q ss_pred HHHhhCC
Q psy18151 193 LGYFQEE 199 (204)
Q Consensus 193 l~~l~~~ 199 (204)
+.++++.
T Consensus 116 ~~~l~~~ 122 (152)
T TIGR00249 116 VAELCPG 122 (152)
T ss_pred HHHHhCC
Confidence 9999985
No 29
>PRK06193 hypothetical protein; Provisional
Probab=99.72 E-value=1.3e-16 Score=127.11 Aligned_cols=119 Identities=12% Similarity=0.014 Sum_probs=92.3
Q ss_pred CeEEEEEcC-CCCCCCCC------------C--CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHH
Q psy18151 40 DKSFYGDRH-RSEYNSPS------------T--IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNI 103 (204)
Q Consensus 40 ~~~i~lvRH-~t~~n~~~------------~--t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i 103 (204)
...|||||| ++++|..+ + |+.|++||+ .+++.|++. +.+++.|||||+. ||+ ||+.+
T Consensus 42 ~~~L~LvRHGet~~n~~~~~~gd~d~~~~~rpLt~~G~~qA~-~l~~~L~~~-----~~~~d~V~sSpl~-Ra~qTA~il 114 (206)
T PRK06193 42 GGYVIYFRHAATDRSQADQDTSDMDDCSTQRNLSEEGREQAR-AIGEAFRAL-----AIPVGKVISSPYC-RAWETAQLA 114 (206)
T ss_pred CCEEEEEeCccCCCCccCCcccccccCcCCCCCCHHHHHHHH-HHHHHHHhc-----CCCCCEEEECCcH-HHHHHHHHH
Confidence 478999999 99766431 1 999999999 999999976 5589999999999 999 99998
Q ss_pred hccCCCCeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCeEEEE
Q psy18151 104 NHKQVIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIV 183 (204)
Q Consensus 104 ~~~~~~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~ilvV 183 (204)
......+ ..+++. ....+.+|+.....+|+..+++++....++|+||
T Consensus 115 ~~~~~~~----~~l~~~-----------------------------~~~~~~~~~~~~y~~~l~~~I~~l~~~~~~vLlV 161 (206)
T PRK06193 115 FGRHEKE----IRLNFL-----------------------------NSEPVPAERNALLKAGLRPLLTTPPDPGTNTVLV 161 (206)
T ss_pred hcccccC----cccccc-----------------------------cccCCChhhHHHHHHHHHHHHhhCCCCCCeEEEE
Confidence 8543211 001000 0012245788888899999999998778899999
Q ss_pred eChHHHHHHHHHhhC
Q psy18151 184 SHPAVLRCLLGYFQE 198 (204)
Q Consensus 184 sHg~~i~~ll~~l~~ 198 (204)
+|+..|+.+...+.+
T Consensus 162 gHnp~i~~l~g~~~~ 176 (206)
T PRK06193 162 GHDDNLEAATGIYPE 176 (206)
T ss_pred eCchHHHHHhCCCCc
Confidence 999999999887655
No 30
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=99.69 E-value=4.5e-16 Score=119.81 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=80.3
Q ss_pred eEEEEEcC-CCCCCCCCC-----CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCCCCeeE
Q psy18151 41 KSFYGDRH-RSEYNSPST-----IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQVIWVDD 113 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~-----t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~~~v~~ 113 (204)
|+|||||| ++.++..+. |+.|++||+ .++++|... +..+|.|||||+. ||+ ||+++++..+.+..+
T Consensus 1 m~l~lvRHg~a~~~~~~d~~rpLt~~G~~qa~-~~~~~l~~~-----~~~~d~i~sSp~~-Ra~qTa~~l~~~~~~~~~~ 73 (159)
T PRK10848 1 MQVFIMRHGDAALDAASDSVRPLTTCGCDESR-LMANWLKGQ-----KVDIERVLVSPYL-RAEQTLEVVGECLNLPASA 73 (159)
T ss_pred CEEEEEeCCCCCCCCCCCcCCCcCHHHHHHHH-HHHHHHHhC-----CCCCCEEEECCHH-HHHHHHHHHHHHhCCCCce
Confidence 47999999 998764322 999999999 999999876 4478999999999 999 999999887644322
Q ss_pred cCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhh-cCCCeEEEEeChHHHHHH
Q psy18151 114 HKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIE-HSKSNLLIVSHPAVLRCL 192 (204)
Q Consensus 114 ~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~-~~~~~ilvVsHg~~i~~l 192 (204)
. ...++. |+ .+.. .+..+++.+. ...++|+||+|...+..+
T Consensus 74 ~-~~~~l~--------------------------------~~-~~~~----~~~~~l~~~~~~~~~~vllVgH~P~l~~l 115 (159)
T PRK10848 74 E-VLPELT--------------------------------PC-GDVG----LVSAYLQALANEGVASVLVISHLPLVGYL 115 (159)
T ss_pred E-EccCCC--------------------------------CC-CCHH----HHHHHHHHHHhcCCCeEEEEeCcCcHHHH
Confidence 1 011111 00 1111 1222233332 234699999999999999
Q ss_pred HHHhhCC
Q psy18151 193 LGYFQEE 199 (204)
Q Consensus 193 l~~l~~~ 199 (204)
...+++.
T Consensus 116 ~~~L~~~ 122 (159)
T PRK10848 116 VAELCPG 122 (159)
T ss_pred HHHHhCC
Confidence 9999863
No 31
>KOG4754|consensus
Probab=99.69 E-value=3.1e-16 Score=123.02 Aligned_cols=153 Identities=18% Similarity=0.154 Sum_probs=116.4
Q ss_pred eEEEEEcC-CCCCCCCCC----------------CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHH
Q psy18151 41 KSFYGDRH-RSEYNSPST----------------IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVN 102 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~----------------t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~ 102 (204)
++|||||| |..+|..+. |+.|++|+. .++..+.... .+..++.|++|||. ||. ||..
T Consensus 15 KtiyLvRHgQg~HNV~g~~~h~ay~s~~~fD~~LTplG~~Qv~-~l~~~~~A~q---L~~~ieliv~SPMr-RtLqT~v~ 89 (248)
T KOG4754|consen 15 KTIYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVD-NLRKHLMAKQ---LPNKIELIVVSPMR-RTLQTMVI 89 (248)
T ss_pred eEEEEEeccccccccCcccchhhhhhhhccccccCHHHHHHHH-HHhhhhhhhh---cCCceeEEEechHH-HHHHHHHH
Confidence 88999999 999998875 999999999 9999876641 13359999999999 999 9988
Q ss_pred HhccC-------CCCeeEcCCe----ee-eeCcccC-CCCHHHHHHhCHHH-HHHHHhC-CCCCCCCCCCCHHHHHHHHH
Q psy18151 103 INHKQ-------VIWVDDHKAL----DD-IHAGICE-GQTYTEIYTNHCAQ-YIDTRAD-KFYNRWPQGECYKDVLTRLE 167 (204)
Q Consensus 103 i~~~~-------~~~v~~~~~L----~E-~~~G~~e-g~~~~~~~~~~~~~-~~~~~~~-~~~~~~p~gEs~~~~~~R~~ 167 (204)
..... .+++.+.|.+ +| +..-.|+ +.+.++.++.||.. |..-..+ ...+.+.-.|+..+...|-+
T Consensus 90 ~f~~~~~e~g~~~~p~~vsp~~i~~~rE~lG~hpCD~r~~v~~~~~lfp~~DFs~~~~dv~~~~~pdy~ed~e~~a~r~r 169 (248)
T KOG4754|consen 90 AFGGYLAEDGEDPAPVKVSPPFIAVCRETLGDHPCDRRSSVTDLMKLFPAYDFSLCETDVDPLKKPDYREDDEESAARSR 169 (248)
T ss_pred HhcceeccCCCcCCceeecchHHHHHHHHhCCCcccccchhHHHHhhcccccceeeccCcchhccCcchhhHHHHHHhHH
Confidence 76543 2477888888 77 5444454 44577777777752 2222222 22333445699999999999
Q ss_pred HHHHHhhc-CCCeEEEEeChHHHHHHHHHhhC
Q psy18151 168 LIILKIEH-SKSNLLIVSHPAVLRCLLGYFQE 198 (204)
Q Consensus 168 ~~l~~l~~-~~~~ilvVsHg~~i~~ll~~l~~ 198 (204)
.+++.+.+ ..+.|.||||++.++.++..+..
T Consensus 170 e~~~~l~~r~ek~iavvths~fl~~llk~i~k 201 (248)
T KOG4754|consen 170 EFLEWLAKRPEKEIAVVTHSGFLRSLLKKIQK 201 (248)
T ss_pred HHHHHHHhCccceEEEEEehHHHHHHHHHhcc
Confidence 99999964 67889999999999998887653
No 32
>KOG3734|consensus
Probab=99.65 E-value=1.3e-15 Score=124.74 Aligned_cols=136 Identities=15% Similarity=0.079 Sum_probs=103.0
Q ss_pred CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCC----CCeeEcCCeeeeeCcccCC-----
Q psy18151 58 IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQV----IWVDDHKALDDIHAGICEG----- 127 (204)
Q Consensus 58 t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~----~~v~~~~~L~E~~~G~~eg----- 127 (204)
|..|.-|++ ..|+.|... +..++.|||||.. ||+ ||..+.+.++ +.+.++|.|-|+..-.-.+
T Consensus 71 t~~g~~~~~-~~gr~l~~a-----~~~i~~ifcSPs~-r~VqTa~~i~~~~g~e~~~~i~vePgL~e~~~~~~~~~~p~~ 143 (272)
T KOG3734|consen 71 TVSGFIQCK-LIGRELLNA-----GIAIDVIFCSPSL-RCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFF 143 (272)
T ss_pred cchhHHHHH-HHHHHHHhc-----CCCcceeecCCch-hHHHHHHHHHHhhchhcCeeEEecchhcchhhhcccCCCCCc
Confidence 888999999 999999987 7799999999999 999 9999998887 6899999999976433333
Q ss_pred CCHHHHHHhCHHHHHHHHhCCC-CCCCCCCCCHHHHHHHHHHHHHHhhc--CCCeEEEEeChHHHHHHHHHhhCCCCC
Q psy18151 128 QTYTEIYTNHCAQYIDTRADKF-YNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPAVLRCLLGYFQEEPPD 202 (204)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gEs~~~~~~R~~~~l~~l~~--~~~~ilvVsHg~~i~~ll~~l~~~~~~ 202 (204)
.+..++....+.. +-..++. ...+-.+||.++...|+..++++|.. .++++|||+||..+....+.+.|.++.
T Consensus 144 is~~el~~~~~~V--D~~y~P~~~~~~~~~es~e~~~~R~~~~~k~i~~k~~~~~lLIV~H~~sv~~~~~~l~~~~~~ 219 (272)
T KOG3734|consen 144 ISPDELKFPGFPV--DLNYDPVYKETPRWGESLEDCNDRIQKVFKAIADKYPNENLLIVAHGSSVDTCSAQLQGLPVR 219 (272)
T ss_pred CCHHHHhccCCCc--ccccchhhhhcccccccHHHHHHHHHHHHHHHHHhcCCCceEEEeccchHHHHHHHhcCCCce
Confidence 2333433221110 0000011 11244689999999999999999954 567899999999999999999886653
No 33
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=99.62 E-value=8.4e-15 Score=115.95 Aligned_cols=112 Identities=14% Similarity=0.052 Sum_probs=81.3
Q ss_pred CeEEEEEcC-CC-CCCCC-------CCCHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCCC
Q psy18151 40 DKSFYGDRH-RS-EYNSP-------STIPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQVI 109 (204)
Q Consensus 40 ~~~i~lvRH-~t-~~n~~-------~~t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~~ 109 (204)
.++|||+|| ++ .+... +.|+.|++||+ .++++|++. . ..|.|||||+. ||+ ||+.++. +.
T Consensus 54 ~~~L~LiRHGet~~~~~~~~~sD~RpLTerG~~qA~-~lg~~L~~~-----~-~~d~I~sSpa~-Ra~qTAe~ia~--~~ 123 (201)
T PRK15416 54 HPVVVLFRHAERCDRSDNQCLSDKTGITVKGTQDAR-ELGKAFSAD-----I-PDYDLYSSNTV-RTIQSATWFSA--GK 123 (201)
T ss_pred CCEEEEEeCccccCccCCCCCCCCCCCCHHHHHHHH-HHHHHHhCC-----C-CCCEEEECCCH-HHHHHHHHHhc--CC
Confidence 478999999 98 33211 12999999999 999999875 2 34899999999 999 9999987 34
Q ss_pred CeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 110 WVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 110 ~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
++..+++|.|.+.+. ...+..++.+. .+++|+||+|+..+
T Consensus 124 ~v~~~~~Lye~~~~~--------------------------------------~~~i~~~i~~~--~~~tVLIVGHnp~i 163 (201)
T PRK15416 124 KLTVDKRLSDCGNGI--------------------------------------YSAIKDLQRKS--PDKNIVIFTHNHCL 163 (201)
T ss_pred CcEecHHHhhcCchh--------------------------------------HHHHHHHHHhC--CCCEEEEEeCchhH
Confidence 667776666665331 11122222222 34799999999999
Q ss_pred HHHHHHhhCCCC
Q psy18151 190 RCLLGYFQEEPP 201 (204)
Q Consensus 190 ~~ll~~l~~~~~ 201 (204)
..+.....+.+.
T Consensus 164 ~~La~~~~~~~~ 175 (201)
T PRK15416 164 TYIAKDKRGVKF 175 (201)
T ss_pred HHHHHHhcCCCC
Confidence 999998776654
No 34
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=99.58 E-value=2.9e-14 Score=109.34 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=82.6
Q ss_pred eEEEEEcC-CCCCCCCC-----C--CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCCCCe
Q psy18151 41 KSFYGDRH-RSEYNSPS-----T--IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQVIWV 111 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~-----~--t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~~~v 111 (204)
++|||+|| ++.+...+ + |+.|+++++ .+|++|++. +..+|.|+|||+. ||+ ||+.+++.++.
T Consensus 2 ~~L~LmRHgkA~~~~~~~~D~dR~Lt~~G~~ea~-~~a~~L~~~-----~~~~D~VL~Spa~-Ra~QTae~v~~~~~~-- 72 (163)
T COG2062 2 MRLYLMRHGKAEWAAPGIADFDRPLTERGRKEAE-LVAAWLAGQ-----GVEPDLVLVSPAV-RARQTAEIVAEHLGE-- 72 (163)
T ss_pred ceEEEeecccccccCCCCCCccCcCCHHHHHHHH-HHHHHHHhc-----CCCCCEEEeChhH-HHHHHHHHHHHhhCc--
Confidence 78999999 88876653 1 999999999 999999998 7789999999999 999 99999999872
Q ss_pred eEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCeEEEEeChHHHHH
Q psy18151 112 DDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRC 191 (204)
Q Consensus 112 ~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~ilvVsHg~~i~~ 191 (204)
.....+.|..++ +. . .-+...++++...-+++++|+|...+..
T Consensus 73 ~~~~~~~~l~p~--------------------------------~d-~----~~~l~~l~~~~d~v~~vllVgH~P~l~~ 115 (163)
T COG2062 73 KKVEVFEELLPN--------------------------------GD-P----GTVLDYLEALGDGVGSVLLVGHNPLLEE 115 (163)
T ss_pred ccceeccccCCC--------------------------------CC-H----HHHHHHHHHhcccCceEEEECCCccHHH
Confidence 111112221111 10 0 1111223333333579999999999999
Q ss_pred HHHHhhCC
Q psy18151 192 LLGYFQEE 199 (204)
Q Consensus 192 ll~~l~~~ 199 (204)
+...+.+.
T Consensus 116 l~~~L~~~ 123 (163)
T COG2062 116 LALLLAGG 123 (163)
T ss_pred HHHHHccc
Confidence 99999874
No 35
>KOG4609|consensus
Probab=99.56 E-value=1.4e-14 Score=113.90 Aligned_cols=136 Identities=18% Similarity=0.065 Sum_probs=97.3
Q ss_pred CeEEEEEcC-C--CCCCCCCCCHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCC--CCeeE
Q psy18151 40 DKSFYGDRH-R--SEYNSPSTIPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQV--IWVDD 113 (204)
Q Consensus 40 ~~~i~lvRH-~--t~~n~~~~t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~--~~v~~ 113 (204)
.+.|+|||| | .+.+....|+.|++||+ .+|..|.+. +.++|+|..|.|. ||. ||.+|.++++ +..+-
T Consensus 94 tRhI~LiRHgeY~~~g~~~hLTelGReQAE-~tGkRL~el-----glk~d~vv~StM~-RA~ETadIIlk~l~d~lk~~s 166 (284)
T KOG4609|consen 94 TRHIFLIRHGEYHVDGSLEHLTELGREQAE-LTGKRLAEL-----GLKFDKVVASTMV-RATETADIILKHLPDDLKRVS 166 (284)
T ss_pred hceEEEEeccceeccCchhhcchhhHHHHH-HHhHHHHHc-----CCchhhhhhhhhh-hhHHHHHHHHHhCCCccceec
Confidence 478999999 5 34455555999999999 999999998 8899999999999 999 9999999985 33444
Q ss_pred cCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHhhc-------CCCeEEEEeCh
Q psy18151 114 HKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH-------SKSNLLIVSHP 186 (204)
Q Consensus 114 ~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~-------~~~~ilvVsHg 186 (204)
.+.|+|=. .+++.+.. ..| + |..--+..--.|+++++...-. .+.-.|||+|+
T Consensus 167 ~~ll~EGa--P~ppdPp~----------k~w-------r-p~~~qy~rdgaRIEaafRryfhRA~p~QeedSy~liV~Ha 226 (284)
T KOG4609|consen 167 CPLLREGA--PYPPDPPV----------KHW-------R-PLDPQYYRDGARIEAAFRRYFHRASPSQEEDSYELIVCHA 226 (284)
T ss_pred ccccccCC--CCCCCCCc----------ccC-------C-ccChHhhhcchHHHHHHHHHHhhcCcccccccEEEEEeec
Confidence 55566521 11111110 011 1 0011111224688888887731 46789999999
Q ss_pred HHHHHHHHHhhCCCCC
Q psy18151 187 AVLRCLLGYFQEEPPD 202 (204)
Q Consensus 187 ~~i~~ll~~l~~~~~~ 202 (204)
.+||.++|.++..|++
T Consensus 227 NVIRY~icRALq~Ppe 242 (284)
T KOG4609|consen 227 NVIRYFICRALQFPPE 242 (284)
T ss_pred chhhhhhhhhhcCCcc
Confidence 9999999999999985
No 36
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=96.91 E-value=0.0025 Score=51.86 Aligned_cols=63 Identities=17% Similarity=0.006 Sum_probs=49.3
Q ss_pred eEEEEEcC-CCCCCCCCCCHhhHHHHHHHHHHHHHhhhhhcC-----CCCCCEEEEeCchHHHH-HHHHHhccC
Q psy18151 41 KSFYGDRH-RSEYNSPSTIPFVIRYCGRPLKAVVQSEINSIL-----PLKPLKKWEITYQVRTE-SVVNINHKQ 107 (204)
Q Consensus 41 ~~i~lvRH-~t~~n~~~~t~~G~~qa~~~l~~~l~~~~~~~~-----~~~~~~i~sSpl~~Ra~-TA~~i~~~~ 107 (204)
.-+.+.|| +... ...|+.|++|+. .+|+.+++...+.. ....-.+++|+.. ||+ ||+.++..+
T Consensus 4 ~v~~~~RHg~r~p--~~LT~~G~~q~~-~~G~~lr~~y~~~~~~~~~~~~~~~~~ss~~~-Rt~~Sa~~~~~gl 73 (242)
T cd07061 4 QVQVLSRHGDRYP--GELTPFGRQQAF-ELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQ-RTLQSAQAFLAGL 73 (242)
T ss_pred EEEEEEecCCCCc--hhhhHHHHHHHH-HHHHHHHHHHHHhcccccCCCCeeEEEECCCc-HHHHHHHHHHHhc
Confidence 45789999 6543 334999999999 99999998754331 2245689999999 999 999998766
No 37
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=94.64 E-value=0.1 Score=43.86 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=39.1
Q ss_pred CHhhHHHHHHHHHHHHHhhhhhcCC----CCCCEEEEeCchHHHH-HHHHHhccC
Q psy18151 58 IPFVIRYCGRPLKAVVQSEINSILP----LKPLKKWEITYQVRTE-SVVNINHKQ 107 (204)
Q Consensus 58 t~~G~~qa~~~l~~~l~~~~~~~~~----~~~~~i~sSpl~~Ra~-TA~~i~~~~ 107 (204)
|+.|.+|.. .+|+++++......+ ..--.|+||... ||+ ||+.++..+
T Consensus 64 T~~G~~q~~-~lG~~lr~~Y~~l~~~~~~~~~v~vrSt~~~-Rt~~Sa~af~~Gl 116 (347)
T PF00328_consen 64 TPRGMEQHY-QLGKRLRERYPGLFPDNYNPEQVYVRSTNKQ-RTIQSAQAFLQGL 116 (347)
T ss_dssp THHHHHHHH-HHHHHHHHHHHTSSTSSS-TTTEEEEEESSH-HHHHHHHHHHHHH
T ss_pred cchhhhHHH-HHHHHHHHHHHHhccccccccceeEEEeccc-hHHHHHHHHHHHH
Confidence 999999999 999999987653211 145678999999 999 999997654
No 38
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=93.85 E-value=0.78 Score=40.91 Aligned_cols=48 Identities=13% Similarity=-0.090 Sum_probs=36.7
Q ss_pred CHhhHHHHHHHHHHHHHhhhhhc--CC------CCCCEEEEeCchHHHH-HHHHHhccC
Q psy18151 58 IPFVIRYCGRPLKAVVQSEINSI--LP------LKPLKKWEITYQVRTE-SVVNINHKQ 107 (204)
Q Consensus 58 t~~G~~qa~~~l~~~l~~~~~~~--~~------~~~~~i~sSpl~~Ra~-TA~~i~~~~ 107 (204)
|+.|..|.. .+|+++++...+. .+ ..--.|++++.. ||+ ||+.+...+
T Consensus 74 T~~G~~~~~-~lG~~lR~rY~~~~lL~~~~c~~~~~v~v~a~~~~-RTi~SAqafl~Gl 130 (436)
T PRK10172 74 TPRGGELVT-LLGHYQRQRLVADGLLAAKGCPQPGQVAAIADVDQ-RTRKTGEAFLAGL 130 (436)
T ss_pred hHHHHHHHH-HHHHHHHHHHHhcCCCCcccCCCcceEEEEeCCch-HHHHHHHHHHHhc
Confidence 999999999 9999999876431 11 122367888999 999 999887655
No 39
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=92.92 E-value=0.49 Score=41.92 Aligned_cols=48 Identities=8% Similarity=-0.123 Sum_probs=36.8
Q ss_pred CHhhHHHHHHHHHHHHHhhhhhcC--------CCCCCEEEEeCchHHHH-HHHHHhccC
Q psy18151 58 IPFVIRYCGRPLKAVVQSEINSIL--------PLKPLKKWEITYQVRTE-SVVNINHKQ 107 (204)
Q Consensus 58 t~~G~~qa~~~l~~~l~~~~~~~~--------~~~~~~i~sSpl~~Ra~-TA~~i~~~~ 107 (204)
|++|..+-. .+|+++++...+.. ....-.+|+++.+ ||+ ||+.++..+
T Consensus 72 T~~G~~~~~-~~G~~~r~~~~~~~ll~~~~cp~~~~v~~~a~~~~-RT~~Sa~afl~Gl 128 (413)
T PRK10173 72 TTKGGVLEV-YMGHYMREWLAQQGLVKSGECPPPDTVYAYANSLQ-RTVATAQFFITGA 128 (413)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHcCCCCCCCCCCcCeEEEEeCCch-HHHHHHHHHHHhc
Confidence 999999999 99998887653220 1124567999999 999 999997654
No 40
>KOG3720|consensus
Probab=92.00 E-value=0.43 Score=42.25 Aligned_cols=48 Identities=10% Similarity=-0.100 Sum_probs=36.6
Q ss_pred CHhhHHHHHHHHHHHHHhhhhh-------cCCCCCCEEEEeCchHHHH-HHHHHhccC
Q psy18151 58 IPFVIRYCGRPLKAVVQSEINS-------ILPLKPLKKWEITYQVRTE-SVVNINHKQ 107 (204)
Q Consensus 58 t~~G~~qa~~~l~~~l~~~~~~-------~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~ 107 (204)
|+.|.+|+. .||++|+++..+ ....+=-.|.||+.. ||+ ||+..+..+
T Consensus 72 T~~G~~Q~~-~LG~~LR~rYvr~~~fL~~~y~~~ev~iRStd~n-Rtl~SAqs~laGl 127 (411)
T KOG3720|consen 72 TDRGMEQMF-ELGRFLRKRYVRYGNFLSPKYNPKEVYIRSTDVN-RTLMSAQSVLAGL 127 (411)
T ss_pred hHHHHHHHH-HHHHHHHHHHhhccccCCcccCcceEEEecCCcc-HHHHHHHHHHHhh
Confidence 999999999 999999993221 112233467899999 999 999887543
No 41
>KOG1057|consensus
Probab=91.10 E-value=0.26 Score=46.41 Aligned_cols=48 Identities=8% Similarity=-0.078 Sum_probs=37.6
Q ss_pred CHhhHHHHHHHHHHHHHhhhhhc--------C--CCCCCEEEEeCchHHHH-HHHHHhccC
Q psy18151 58 IPFVIRYCGRPLKAVVQSEINSI--------L--PLKPLKKWEITYQVRTE-SVVNINHKQ 107 (204)
Q Consensus 58 t~~G~~qa~~~l~~~l~~~~~~~--------~--~~~~~~i~sSpl~~Ra~-TA~~i~~~~ 107 (204)
|+.|+.||+ +||+.++...-.. + --.--.||+|+-. |-+ ||+++++.+
T Consensus 513 T~agr~QAe-eLGr~FR~~~~gg~g~gllrLhst~rhDlKIYaSdEg-RVqmtAaaFAkgL 571 (1018)
T KOG1057|consen 513 THAGRYQAE-ELGRQFRCDYPGGQGLGLLRLHSTYRHDLKIYASDEG-RVQMTAAAFAKGL 571 (1018)
T ss_pred cchhHhhHH-HHHHHHHhcCCCCCCcceeeehhhhhccceeEecCcc-hHHHHHHHHHHHH
Confidence 999999999 9999998752100 0 0134689999999 999 999999764
No 42
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=67.69 E-value=14 Score=31.36 Aligned_cols=42 Identities=21% Similarity=0.436 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhc-CCCeEEEEeChHHHHHHHHHhhCCCC
Q psy18151 160 KDVLTRLELIILKIEH-SKSNLLIVSHPAVLRCLLGYFQEEPP 201 (204)
Q Consensus 160 ~~~~~R~~~~l~~l~~-~~~~ilvVsHg~~i~~ll~~l~~~~~ 201 (204)
..+..|+.+++..+.. .+.+|+||+||..-..++.++...+.
T Consensus 174 ~~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~ 216 (310)
T PF12048_consen 174 ERLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPP 216 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCCC
Confidence 3566677777777655 45569999999999999999887664
No 43
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=63.91 E-value=4.6 Score=33.61 Aligned_cols=36 Identities=8% Similarity=0.230 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCeEEEEeChHHHH
Q psy18151 155 QGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLR 190 (204)
Q Consensus 155 ~gEs~~~~~~R~~~~l~~l~~~~~~ilvVsHg~~i~ 190 (204)
.+.|.++..+++++..+...+-..+|++.+||+.|.
T Consensus 190 ~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~ 225 (268)
T PF09370_consen 190 TALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIA 225 (268)
T ss_dssp -S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 357899999999999999887778999999999875
No 44
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=61.88 E-value=36 Score=29.21 Aligned_cols=98 Identities=10% Similarity=-0.074 Sum_probs=64.2
Q ss_pred CEEEEeCchHHHH-HHHHHhccCCCCeeEcCCeeeeeCcccCCCCHHHHHHhCHH-------------HHHHHHhCCC-C
Q psy18151 86 LKKWEITYQVRTE-SVVNINHKQVIWVDDHKALDDIHAGICEGQTYTEIYTNHCA-------------QYIDTRADKF-Y 150 (204)
Q Consensus 86 ~~i~sSpl~~Ra~-TA~~i~~~~~~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~-------------~~~~~~~~~~-~ 150 (204)
+.|..|+-- --. +|..+++.++.++.+.| +|.+..-..+++.+..|+ .++....+-. .
T Consensus 30 ~VIlvsDn~-aD~~lA~~iaellNA~Vlttp------wg~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lks~Git 102 (337)
T COG2247 30 VVILVSDNE-ADLLLALPIAELLNAPVLTTP------WGIYNESVLDEIIELNPDLVLIIGGPIAVSPNYENALKSLGIT 102 (337)
T ss_pred EEEEecchH-HHHHHhhHHHHHhCCeeEecC------cccccHHHHHHHHhhCCceEEEECCCCcCChhHHHHHHhCCcE
Confidence 677888777 677 99999999998888766 455544444455444442 3333333321 1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHh-hc-CCCeEEEEeChHHHH
Q psy18151 151 NRWPQGECYKDVLTRLELIILKI-EH-SKSNLLIVSHPAVLR 190 (204)
Q Consensus 151 ~~~p~gEs~~~~~~R~~~~l~~l-~~-~~~~ilvVsHg~~i~ 190 (204)
..--||.+..+..+++..++.+- .. -++..+||.||---.
T Consensus 103 V~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy~ 144 (337)
T COG2247 103 VKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDYA 144 (337)
T ss_pred EEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccccH
Confidence 22237899999999999988754 22 345788999997555
No 45
>PF02604 PhdYeFM_antitox: Antitoxin Phd_YefM, type II toxin-antitoxin system; InterPro: IPR006442 This entry is represented by Bacteriophage P1, prevent-host-death protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins is characterised by a region of about 55 amino acids toward the N-terminal end of bacterial proteins which are themselves only 85 amino acids, or thereabouts, in length. The best-characterised member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (IPR006440 from INTERPRO) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. ; PDB: 3DBO_A 2ODK_B 3G5O_D 2A6Q_B 3D55_C 3OEI_E 3CTO_C 3K33_D 3KH2_F 3HS2_C ....
Probab=52.12 E-value=22 Score=22.90 Aligned_cols=30 Identities=7% Similarity=0.213 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 158 CYKDVLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 158 s~~~~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
|..++..++..+++.+...+..|+|.-||.
T Consensus 5 s~~e~r~~~~~~l~~v~~~~~pv~It~~g~ 34 (75)
T PF02604_consen 5 SITEFRNNFSELLDEVEEGEEPVIITKNGK 34 (75)
T ss_dssp EHHHHHHTHHHHHHHHHHCT-EEEEEETTE
T ss_pred cHHHHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 467888999999999877666677777774
No 46
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=51.12 E-value=33 Score=24.54 Aligned_cols=32 Identities=9% Similarity=0.296 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCeEEEEeC
Q psy18151 153 WPQGECYKDVLTRLELIILKIEHSKSNLLIVSH 185 (204)
Q Consensus 153 ~p~gEs~~~~~~R~~~~l~~l~~~~~~ilvVsH 185 (204)
...+++.+++.+++.++++++.. ++.|+|.|.
T Consensus 35 ~~~~~~~~~~~~~l~~~i~~~~~-~~~vivltD 66 (116)
T TIGR00824 35 FVPGENAETLQEKYNAALADLDT-EEEVLFLVD 66 (116)
T ss_pred cCCCcCHHHHHHHHHHHHHhcCC-CCCEEEEEe
Confidence 45678899999999999988743 466777765
No 47
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=44.79 E-value=50 Score=19.59 Aligned_cols=30 Identities=7% Similarity=0.185 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 158 CYKDVLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 158 s~~~~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
+..++..++...++++...+ .|+|.-||..
T Consensus 3 ~~te~r~~~~~~l~~v~~~~-pv~It~~g~~ 32 (52)
T TIGR01552 3 SLSEAKNKLGELLKRVRDGE-PVTITKRGRP 32 (52)
T ss_pred CHHHHHHHHHHHHHHHHCCC-CEEEEECCcc
Confidence 46788888899998887654 7888777764
No 48
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=44.26 E-value=39 Score=25.94 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=30.8
Q ss_pred CCCCC-CCHHHHH--HHHHHHHHHhhcCCCeEEEEeChHHHHHHHH
Q psy18151 152 RWPQG-ECYKDVL--TRLELIILKIEHSKSNLLIVSHPAVLRCLLG 194 (204)
Q Consensus 152 ~~p~g-Es~~~~~--~R~~~~l~~l~~~~~~ilvVsHg~~i~~ll~ 194 (204)
-.||| -...... ..+..+++++.+.++.|.-||||..+-.-..
T Consensus 71 ~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 71 VIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred EECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 35777 5544444 5777888888778999999999997654433
No 49
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=43.01 E-value=34 Score=28.70 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChHHHHH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPAVLRC 191 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~~i~~ 191 (204)
+...++...+.++.+.+..|++||||.+--.
T Consensus 31 ~~l~~l~~~i~~l~~~g~~vilVssGAv~~G 61 (284)
T cd04256 31 GRLASIVEQVSELQSQGREVILVTSGAVAFG 61 (284)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeeCcHHhC
Confidence 4445555555555567889999999987543
No 50
>PRK04946 hypothetical protein; Provisional
Probab=42.02 E-value=1e+02 Score=24.11 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCeEEEEeCh---HHHHHHHHHhhCC
Q psy18151 155 QGECYKDVLTRLELIILKIEHSKSNLLIVSHP---AVLRCLLGYFQEE 199 (204)
Q Consensus 155 ~gEs~~~~~~R~~~~l~~l~~~~~~ilvVsHg---~~i~~ll~~l~~~ 199 (204)
.|-+.++....+..++..-...+-..+.|-|| ++++..+..++..
T Consensus 101 hG~~~eeA~~~L~~fl~~a~~~g~r~v~IIHGkG~gvLk~~V~~wL~q 148 (181)
T PRK04946 101 HGLTQLQAKQELGALIAACRKEHVFCACVMHGHGKHILKQQTPLWLAQ 148 (181)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHhHHHHHHHHHHcC
Confidence 48899999999999999987667777888899 8999888887754
No 51
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=40.86 E-value=27 Score=27.34 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHHhhc--CCCeEEEEeChH
Q psy18151 157 ECYKDVLTRLELIILKIEH--SKSNLLIVSHPA 187 (204)
Q Consensus 157 Es~~~~~~R~~~~l~~l~~--~~~~ilvVsHg~ 187 (204)
-+..++.+|+..+++.|.+ ++..||+|+|-.
T Consensus 71 ~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~ 103 (178)
T PF14606_consen 71 MSPEEFRERLDGFVKTIREAHPDTPILLVSPIP 103 (178)
T ss_dssp CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE---
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 3556889999999999954 678999999754
No 52
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=40.68 E-value=28 Score=25.65 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=28.5
Q ss_pred CCCCCCC-HHHHH---HHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 152 RWPQGEC-YKDVL---TRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 152 ~~p~gEs-~~~~~---~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
-.|||.. ...+. .++..++++..+.++.|..+|||..+
T Consensus 42 ilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~ 83 (147)
T PF01965_consen 42 ILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAV 83 (147)
T ss_dssp EEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHH
T ss_pred EECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcch
Confidence 3577766 55665 68889999988888999999999943
No 53
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=40.45 E-value=74 Score=22.86 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 156 GECYKDVLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 156 gEs~~~~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
.+...+....+..+++.....++.|+|-|++|.
T Consensus 57 ~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 89 (138)
T smart00195 57 ETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGV 89 (138)
T ss_pred CCChHHHHHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 345566778888888888777889999999875
No 54
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=38.88 E-value=50 Score=27.29 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 160 KDVLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 160 ~~~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
+.+.+++..-++++.+.+.+|++|||..
T Consensus 180 ~~F~~K~~~rl~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 180 AAFQEKCLERLNELVEKNKTIVLVSHDL 207 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 4677888888888855669999999986
No 55
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=36.02 E-value=56 Score=25.02 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
+...++...+.++.+.+.+|+++||..
T Consensus 161 ~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 161 AGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 345666777777755578999999963
No 56
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=36.01 E-value=95 Score=23.47 Aligned_cols=43 Identities=5% Similarity=0.066 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHhhcC--CCeEEEEeChHH-HHHHHHHhhCCC
Q psy18151 158 CYKDVLTRLELIILKIEHS--KSNLLIVSHPAV-LRCLLGYFQEEP 200 (204)
Q Consensus 158 s~~~~~~R~~~~l~~l~~~--~~~ilvVsHg~~-i~~ll~~l~~~~ 200 (204)
|++++.+++++...++.+. .+.|+-|.-||+ ....++..+|.+
T Consensus 11 s~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~ 56 (156)
T PRK09177 11 SWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIR 56 (156)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCC
Confidence 7788899999999988542 468888888885 777778888876
No 57
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=35.20 E-value=1.1e+02 Score=25.26 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=25.9
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHhhcCCCeEEEEeChHHHHH
Q psy18151 152 RWPQGECY-KDVLTRLELIILKIEHSKSNLLIVSHPAVLRC 191 (204)
Q Consensus 152 ~~p~gEs~-~~~~~R~~~~l~~l~~~~~~ilvVsHg~~i~~ 191 (204)
..|++..+ .++..++..+++.....++.|+|=+.+|.-|.
T Consensus 144 pipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRT 184 (241)
T PTZ00393 144 IFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRA 184 (241)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHH
Confidence 34444433 44556666777766667889999998875443
No 58
>KOG1250|consensus
Probab=33.65 E-value=3.5e+02 Score=24.23 Aligned_cols=85 Identities=7% Similarity=-0.130 Sum_probs=49.8
Q ss_pred hhhhhHHhhhhhccccccCCCC-----CCCeEEEEEcC--CCCCCCCCCCHhhHHHHHHHHHHHHHhhhhhcCCCCCCEE
Q psy18151 16 FVQEQVFSSSSEFGLKSSLGRP-----GLDKSFYGDRH--RSEYNSPSTIPFVIRYCGRPLKAVVQSEINSILPLKPLKK 88 (204)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~i~lvRH--~t~~n~~~~t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i 88 (204)
|..+..-+.+.++....++.+. ...+++||=|- |..+... .+|...+- ..+.+. . +-..+
T Consensus 51 ~~~~~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK---~RGa~~~~----~kla~~---~---~~~gV 117 (457)
T KOG1250|consen 51 YDISSAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFK---IRGAGNAL----QKLAKQ---Q---KKAGV 117 (457)
T ss_pred chhhhhhhccccceecccchhhhhhhhhcCCceEEEehhccccccee---hhhHHHHH----HHHHHh---h---hcCce
Confidence 3444444445555555555443 12478999998 7665422 34444333 223332 0 35677
Q ss_pred EEeCchHHHH-HHHHHhccCCCCeeEc
Q psy18151 89 WEITYQVRTE-SVVNINHKQVIWVDDH 114 (204)
Q Consensus 89 ~sSpl~~Ra~-TA~~i~~~~~~~v~~~ 114 (204)
|||... -+- -+..-++++|+|+.+.
T Consensus 118 iasSaG-Nha~a~Ayaa~~LgipaTIV 143 (457)
T KOG1250|consen 118 IASSAG-NHAQAAAYAARKLGIPATIV 143 (457)
T ss_pred EEecCc-cHHHHHHHHHHhcCCceEEE
Confidence 888777 677 8888888999876653
No 59
>KOG1382|consensus
Probab=33.46 E-value=80 Score=28.50 Aligned_cols=49 Identities=8% Similarity=-0.193 Sum_probs=37.3
Q ss_pred CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHH-HHHHHhccCC
Q psy18151 58 IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTE-SVVNINHKQV 108 (204)
Q Consensus 58 t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~-TA~~i~~~~~ 108 (204)
...|++.|. .+++.+-+...+......=.|+++-.+ ||. ||+.++..+.
T Consensus 134 ~~~g~~~a~-R~~r~f~~~y~~~~n~~~y~i~tt~~~-R~~dSA~~F~~GLf 183 (467)
T KOG1382|consen 134 EDEGRMLAK-RLARRFPALYYELENPTVYNINTTASQ-RVVDSAQAFAYGLF 183 (467)
T ss_pred hhhHHHHHH-HHHHHHHHHHHhhcCCceEEeeccchH-HHHHHHHHHHhhhc
Confidence 677888888 777776665433334467788999999 999 9999987663
No 60
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=32.46 E-value=2.2e+02 Score=26.02 Aligned_cols=83 Identities=10% Similarity=0.088 Sum_probs=48.7
Q ss_pred CchHHHH-HHHHHhccCCCCeeEcCCeeeeeCcccCCCCHHHHHHhCHHHHHHHHhCCCC--CCCC-CCCCHHHHHHHHH
Q psy18151 92 TYQVRTE-SVVNINHKQVIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFY--NRWP-QGECYKDVLTRLE 167 (204)
Q Consensus 92 pl~~Ra~-TA~~i~~~~~~~v~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~--~~~p-~gEs~~~~~~R~~ 167 (204)
+.. .+. -+..+.+.+|+++..+....++..|.-. .. +.+.....+... +.-| .-=|+ +-.+++-
T Consensus 113 ~~~-~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQ--RV--------EIlKaLyr~a~iLILDEPTaVLTP-~E~~~lf 180 (501)
T COG3845 113 DRR-QARARIKELSERYGLPVDPDAKVADLSVGEQQ--RV--------EILKALYRGARLLILDEPTAVLTP-QEADELF 180 (501)
T ss_pred CHH-HHHHHHHHHHHHhCCCCCccceeecCCcchhH--HH--------HHHHHHhcCCCEEEEcCCcccCCH-HHHHHHH
Confidence 455 566 7778888899999998888888877421 11 112221222110 0111 11222 2245556
Q ss_pred HHHHHhhcCCCeEEEEeCh
Q psy18151 168 LIILKIEHSKSNLLIVSHP 186 (204)
Q Consensus 168 ~~l~~l~~~~~~ilvVsHg 186 (204)
..++.+.+.+.+|++|||-
T Consensus 181 ~~l~~l~~~G~tIi~ITHK 199 (501)
T COG3845 181 EILRRLAAEGKTIIFITHK 199 (501)
T ss_pred HHHHHHHHCCCEEEEEecc
Confidence 6666777789999999995
No 61
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=32.40 E-value=77 Score=23.78 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
....+...+.++.+.+.+|+++||..-
T Consensus 117 ~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 117 EVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 345566666666555789999999864
No 62
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=30.79 E-value=2.8e+02 Score=22.29 Aligned_cols=49 Identities=8% Similarity=-0.062 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHHHHHHHhccCCCCeeEcCCe
Q psy18151 60 FVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTESVVNINHKQVIWVDDHKAL 117 (204)
Q Consensus 60 ~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~TA~~i~~~~~~~v~~~~~L 117 (204)
-+-++-. .+.+.+++. ++..|++.+.. ...+++.++++.|+++...+.+
T Consensus 183 ps~~~l~-~l~~~ik~~-------~v~~i~~e~~~-~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 183 PSPKDLA-ELIKLIKEN-------KVKCIFTEPQF-SSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp S-HHHHH-HHHHHHHHT-------T-SEEEEETTS--THHHHHHHHCCT-EEEESSTT
T ss_pred CCHHHHH-HHHHHhhhc-------CCcEEEecCCC-ChHHHHHHHHHcCCcEEEeCCC
Confidence 4445555 666777777 89999999988 5558999999999887655555
No 63
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=30.51 E-value=86 Score=24.18 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
..+.+.+.+.++.+.+.+|++|||..-.
T Consensus 124 ~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 124 DINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 3445555555554457899999999754
No 64
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=30.46 E-value=57 Score=26.75 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCeEEEEeChHHHH
Q psy18151 156 GECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLR 190 (204)
Q Consensus 156 gEs~~~~~~R~~~~l~~l~~~~~~ilvVsHg~~i~ 190 (204)
-+|++|..+|+.+.+.. ..+++..++|||+++..
T Consensus 126 i~s~~eA~~~ive~~~~-~~~~~~~VliaH~~~~G 159 (238)
T cd07397 126 VISLEESAQRIIAAAKK-APPDLPLILLAHNGPSG 159 (238)
T ss_pred CCCHHHHHHHHHHHhhh-cCCCCCeEEEeCcCCcC
Confidence 36888888888887752 23456789999998754
No 65
>PRK09191 two-component response regulator; Provisional
Probab=30.06 E-value=2.5e+02 Score=22.15 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHhhc-CCCeEEEEeChHHHHHHHHHhh
Q psy18151 156 GECYKDVLTRLELIILKIEH-SKSNLLIVSHPAVLRCLLGYFQ 197 (204)
Q Consensus 156 gEs~~~~~~R~~~~l~~l~~-~~~~ilvVsHg~~i~~ll~~l~ 197 (204)
|-|...+..|+..+.+.+.. ....|+|+......+..+...+
T Consensus 115 ~~s~~tV~~~l~ra~~~l~~~~~~~~liidd~~~~~~~l~~~L 157 (261)
T PRK09191 115 GVDPAEAEALLDDARAEIARQVATRVLIIEDEPIIAMDLEQLV 157 (261)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCeEEEEcCcHHHHHHHHHHH
Confidence 56777888899888888864 4568999999888777666555
No 66
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=30.02 E-value=79 Score=25.39 Aligned_cols=27 Identities=0% Similarity=0.096 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 163 LTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 163 ~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
...+.+++++..+.++.|..||||..+
T Consensus 114 ~~~v~~lv~~f~~~gK~vaAIChgp~i 140 (217)
T PRK11780 114 NPDVKALVRAFHQAGKPIGFICIAPAM 140 (217)
T ss_pred CHHHHHHHHHHHHCCCEEEEECHHHHH
Confidence 345677777777788999999999954
No 67
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=29.68 E-value=85 Score=24.54 Aligned_cols=27 Identities=7% Similarity=0.199 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
....+...+.++.+.+.+|+++||..-
T Consensus 173 ~~~~l~~~l~~~~~~~~tii~vsH~~~ 199 (216)
T TIGR00960 173 LSRDIMRLFEEFNRRGTTVLVATHDIN 199 (216)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 345556666666555779999999864
No 68
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=29.27 E-value=86 Score=24.43 Aligned_cols=27 Identities=7% Similarity=0.297 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
....+.+.+.++.+.+.+|+++||..-
T Consensus 172 ~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 172 LSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 345556666666545789999999863
No 69
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=29.16 E-value=85 Score=24.42 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
+....+...+.++.+.+.+|+++||..-
T Consensus 170 ~~~~~~~~~l~~~~~~~~tiiivtH~~~ 197 (214)
T cd03292 170 DTTWEIMNLLKKINKAGTTVVVATHAKE 197 (214)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3455666677766555789999999863
No 70
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=29.02 E-value=90 Score=24.19 Aligned_cols=28 Identities=11% Similarity=0.288 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
+....+...+.++.+.+.+|+++||..-
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~sH~~~ 187 (205)
T cd03226 160 KNMERVGELIRELAAQGKAVIVITHDYE 187 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4456666777776555779999999864
No 71
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=28.84 E-value=88 Score=24.37 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
....+...+.++.+.+.+|+++||..-
T Consensus 167 ~~~~l~~~l~~~~~~~~tvi~~sH~~~ 193 (213)
T cd03235 167 TQEDIYELLRELRREGMTILVVTHDLG 193 (213)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 445666666666545679999999864
No 72
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=28.76 E-value=74 Score=26.39 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 163 LTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 163 ~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
...+...++++.+++.+|++|||.-
T Consensus 175 ~~~i~~lL~~l~~eg~tIl~vtHDL 199 (254)
T COG1121 175 QKEIYDLLKELRQEGKTVLMVTHDL 199 (254)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4455667777766688999999975
No 73
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=28.62 E-value=1.1e+02 Score=25.08 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCeEEEE-eChHHHHHHHH
Q psy18151 157 ECYKDVLTRLELIILKIEHSKSNLLIV-SHPAVLRCLLG 194 (204)
Q Consensus 157 Es~~~~~~R~~~~l~~l~~~~~~ilvV-sHg~~i~~ll~ 194 (204)
=|..++.+.+.++++++.+.++..+|| +-|-.+++|+.
T Consensus 36 ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~ 74 (253)
T PF01715_consen 36 YSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLN 74 (253)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHh
Confidence 366789999999999997766544444 44445555553
No 74
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.56 E-value=89 Score=23.57 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
+...++.+.+.++.+.+.+++++||..-
T Consensus 129 ~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 129 ESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 3456666777777555679999999864
No 75
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=28.36 E-value=94 Score=23.96 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
....+.+++.++.+.+.+|+++||-.
T Consensus 162 ~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 162 GVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 45666677777655678999999964
No 76
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=28.32 E-value=93 Score=24.07 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
.....+.+.+.++.+.+.+|+++||...
T Consensus 161 ~~~~~l~~~l~~~~~~~~tiii~sh~~~ 188 (200)
T PRK13540 161 LSLLTIITKIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 3455666777776555789999999753
No 77
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=28.15 E-value=77 Score=26.23 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
...++.+.+.++...+..++||+||+.
T Consensus 32 ~i~~~~~~I~~~~~~g~~vvlV~Sga~ 58 (266)
T PRK12314 32 RIEQLVFVISDLMNKGKEVILVSSGAI 58 (266)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeeCcc
Confidence 344444444444456778999999854
No 78
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.03 E-value=96 Score=23.88 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
+....+.+.+.++.+.+.+|+++||..
T Consensus 142 ~~~~~l~~~l~~~~~~~~tiiivtH~~ 168 (192)
T cd03232 142 QAAYNIVRFLKKLADSGQAILCTIHQP 168 (192)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 344556666666655578999999985
No 79
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=28.02 E-value=94 Score=24.15 Aligned_cols=28 Identities=7% Similarity=0.241 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
+..+++...+.++.+.+.+|+++||...
T Consensus 169 ~~~~~l~~~l~~~~~~~~tvi~~sh~~~ 196 (213)
T cd03262 169 ELVGEVLDVMKDLAEEGMTMVVVTHEMG 196 (213)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4466777777777555679999999864
No 80
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=27.91 E-value=96 Score=24.04 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
.....+.+.+.++.+.+.+++++||..
T Consensus 159 ~~~~~l~~~l~~~~~~g~tiii~sH~~ 185 (201)
T cd03231 159 AGVARFAEAMAGHCARGGMVVLTTHQD 185 (201)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 345566666666655578999999954
No 81
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=27.66 E-value=1.3e+02 Score=24.29 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 156 GECYKDVLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 156 gEs~~~~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
|.--.+...++...++++-+.+.+|++.||..-+
T Consensus 166 GNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l 199 (223)
T COG2884 166 GNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL 199 (223)
T ss_pred CCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH
Confidence 3334577888889999998889999999998754
No 82
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=27.56 E-value=1.2e+02 Score=27.89 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=35.4
Q ss_pred CCCCCCCCCCHHHHHHHHH--HHHHHhhcCCCeEEEEeChHHHHHHHHH
Q psy18151 149 FYNRWPQGECYKDVLTRLE--LIILKIEHSKSNLLIVSHPAVLRCLLGY 195 (204)
Q Consensus 149 ~~~~~p~gEs~~~~~~R~~--~~l~~l~~~~~~ilvVsHg~~i~~ll~~ 195 (204)
..+-+..--||.|+.+|+. ..+.++.+++..|+||-|.-.+--+++.
T Consensus 233 DvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD 281 (591)
T COG1245 233 DVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSD 281 (591)
T ss_pred CEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhh
Confidence 3344455589999999986 4678887778999999999876555543
No 83
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=27.56 E-value=1.1e+02 Score=24.84 Aligned_cols=32 Identities=9% Similarity=0.226 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhc-CCCeEEEEeChHHHHHH
Q psy18151 161 DVLTRLELIILKIEH-SKSNLLIVSHPAVLRCL 192 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~-~~~~ilvVsHg~~i~~l 192 (204)
+-.+.+...+.++.+ .+.+|++|||...+...
T Consensus 176 ~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 176 KTAKEVLELLRELNKERGKTIIMVTHDPELAKY 208 (226)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 345556666666644 47799999999877654
No 84
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=27.18 E-value=97 Score=24.62 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
+...++...+.++.+.+.+|+++||..
T Consensus 171 ~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (237)
T PRK11614 171 IIIQQIFDTIEQLREQGMTIFLVEQNA 197 (237)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 445666677777655578999999985
No 85
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.97 E-value=1e+02 Score=23.93 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 163 LTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 163 ~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
...+...+.++.+.+.+|+++||-..
T Consensus 165 ~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 165 VARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecChh
Confidence 44555666666445679999999753
No 86
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.97 E-value=1e+02 Score=24.19 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
....+...+.++.+.+.+|+++||..-
T Consensus 172 ~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 172 GITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 345666677666556789999999764
No 87
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=26.85 E-value=1e+02 Score=23.79 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
+....+.+.++++.+.+.+|+++||..-+
T Consensus 168 ~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 196 (206)
T TIGR03608 168 KNRDEVLDLLLELNDEGKTIIIVTHDPEV 196 (206)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 34556666777665557899999998753
No 88
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=26.59 E-value=88 Score=22.21 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 157 ECYKDVLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 157 Es~~~~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
+...+...++..+++.....+++|+|-|++|.
T Consensus 53 ~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 84 (133)
T PF00782_consen 53 EPILEHLDQAVEFIENAISEGGKVLVHCKAGL 84 (133)
T ss_dssp SHGGGGHHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred cchHHHHHHHHHhhhhhhcccceeEEEeCCCc
Confidence 34445556677777777677899999998875
No 89
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=26.54 E-value=1e+02 Score=23.92 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
....+...+.++.+.+.+|+++||..-
T Consensus 169 ~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 169 GRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 345566666666545679999999854
No 90
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.52 E-value=1e+02 Score=23.96 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
....+...+.++.+.+.+|+++||..
T Consensus 162 ~~~~l~~~l~~~~~~~~tiii~sH~~ 187 (207)
T PRK13539 162 AVALFAELIRAHLAQGGIVIAATHIP 187 (207)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34566666766655578999999985
No 91
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.48 E-value=1e+02 Score=23.37 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhcC-CCeEEEEeChHH
Q psy18151 161 DVLTRLELIILKIEHS-KSNLLIVSHPAV 188 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~-~~~ilvVsHg~~ 188 (204)
+...++...+.++.+. +.+++++||..-
T Consensus 134 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 134 ITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3455666777777554 689999999864
No 92
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=26.44 E-value=1.3e+02 Score=24.07 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 164 TRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 164 ~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
..+.+++++..++++.|..||||..+
T Consensus 112 ~~l~~lv~~f~~~gK~VaAIChgp~~ 137 (213)
T cd03133 112 PEVERLVREFHQAGKPIGAICIAPAL 137 (213)
T ss_pred HHHHHHHHHHHHCCCeEEEECHHHHH
Confidence 45777777777788999999999954
No 93
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=26.31 E-value=97 Score=24.63 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
....+...+.++.+.+.+|+++||..-.
T Consensus 179 ~~~~l~~~l~~~~~~~~tvi~vsH~~~~ 206 (243)
T TIGR01978 179 ALKIVAEGINRLREPDRSFLIITHYQRL 206 (243)
T ss_pred HHHHHHHHHHHHHHCCcEEEEEEecHHH
Confidence 3455666666665556799999997643
No 94
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=26.29 E-value=1.1e+02 Score=23.03 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 163 LTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 163 ~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
...+...+.++.+.+.+|+++||..-
T Consensus 132 ~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 132 ERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 44555566665445679999999874
No 95
>PRK11409 antitoxin YefM; Provisional
Probab=25.99 E-value=1.4e+02 Score=20.01 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 158 CYKDVLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 158 s~~~~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
++.++++.+...++++....++|+|.-+|.
T Consensus 5 ~~s~~R~~l~~~l~~v~~~~epv~ITr~g~ 34 (83)
T PRK11409 5 SYSEARQNLSATMMKAVEDHAPILITRQNG 34 (83)
T ss_pred cHHHHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence 467788888888888865445555555543
No 96
>KOG1495|consensus
Probab=25.67 E-value=2.5e+02 Score=23.86 Aligned_cols=48 Identities=27% Similarity=0.310 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhhc------CCCeEEEEeChH-HHHHHHHHhhCCCC
Q psy18151 154 PQGECYKDVLTRLELIILKIEH------SKSNLLIVSHPA-VLRCLLGYFQEEPP 201 (204)
Q Consensus 154 p~gEs~~~~~~R~~~~l~~l~~------~~~~ilvVsHg~-~i~~ll~~l~~~~~ 201 (204)
..|||..++.+|--..++.+.. ++..++|||... ++......+.|.|.
T Consensus 101 ~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~ 155 (332)
T KOG1495|consen 101 SEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPK 155 (332)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCcc
Confidence 3589999999999998888842 555666666654 67777777777775
No 97
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=25.62 E-value=1.1e+02 Score=24.51 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 163 LTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 163 ~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
...+...+.++.+.+.+|+++||....
T Consensus 181 ~~~l~~~l~~l~~~~~tiii~sH~~~~ 207 (248)
T PRK09580 181 LKIVADGVNSLRDGKRSFIIVTHYQRI 207 (248)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 455556666665556899999998543
No 98
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=25.34 E-value=1.1e+02 Score=24.00 Aligned_cols=29 Identities=10% Similarity=0.050 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
+....+..++.++.+.+.+|+++||..-.
T Consensus 183 ~~~~~l~~~l~~~~~~g~tii~vsH~~~~ 211 (224)
T TIGR02324 183 ANRQVVVELIAEAKARGAALIGIFHDEEV 211 (224)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 34556666777765556799999999643
No 99
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=25.34 E-value=1.1e+02 Score=24.14 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
....+...++++.+.+.+|+++||..
T Consensus 168 ~~~~~~~~l~~~~~~~~tii~~sH~~ 193 (232)
T cd03218 168 AVQDIQKIIKILKDRGIGVLITDHNV 193 (232)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34556666666655567999999986
No 100
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=25.29 E-value=1.2e+02 Score=23.89 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 163 LTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 163 ~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
...+...+.++.+.+.+|++|||-.-.
T Consensus 169 ~~~~~~~l~~~~~~~~tii~itH~~~~ 195 (213)
T cd03279 169 LEAVATALELIRTENRMVGVISHVEEL 195 (213)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECchHH
Confidence 344555666665456799999997643
No 101
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=25.16 E-value=1.1e+02 Score=24.43 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
+...++...+.++.+.+.+++++||....
T Consensus 175 ~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 203 (242)
T PRK11124 175 EITAQIVSIIRELAETGITQVIVTHEVEV 203 (242)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 34566667777775557899999998754
No 102
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=25.07 E-value=1.1e+02 Score=23.80 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
....+...+.++.+.+.+|+++||..-
T Consensus 171 ~~~~l~~~l~~~~~~~~tii~~tH~~~ 197 (218)
T cd03266 171 ATRALREFIRQLRALGKCILFSTHIMQ 197 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 455666666666555779999999874
No 103
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=24.71 E-value=1.1e+02 Score=23.79 Aligned_cols=29 Identities=10% Similarity=0.312 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhc-CCCeEEEEeChHHH
Q psy18151 161 DVLTRLELIILKIEH-SKSNLLIVSHPAVL 189 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~-~~~~ilvVsHg~~i 189 (204)
+...++.+.+.++.+ .+.+|+++||..-.
T Consensus 174 ~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 174 ETGKEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 345666777777755 46799999998754
No 104
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=24.57 E-value=58 Score=28.28 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 157 ECYKDVLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 157 Es~~~~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
|..+.+.+|+.+++.+-.+++++|+||+=|.++
T Consensus 319 ~a~~~a~~~v~~iI~e~~~pg~tViviGVGNT~ 351 (355)
T PF07431_consen 319 EAVDKAVERVKEIIRENTKPGDTVIVIGVGNTV 351 (355)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEeccccC
Confidence 445667777777777777789999999988764
No 105
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=24.40 E-value=1.2e+02 Score=24.06 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
....+...+.++.+.+.+|+++||..-.
T Consensus 178 ~~~~l~~~l~~~~~~~~tii~vsH~~~~ 205 (236)
T cd03219 178 ETEELAELIRELRERGITVLLVEHDMDV 205 (236)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 3455566666665456799999997643
No 106
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=24.38 E-value=1e+02 Score=24.91 Aligned_cols=38 Identities=8% Similarity=0.078 Sum_probs=26.4
Q ss_pred CCCCC-CCHHHHH--HHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 152 RWPQG-ECYKDVL--TRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 152 ~~p~g-Es~~~~~--~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
-.||| -...++. ..+.++++++.+.++.|..||||..+
T Consensus 101 ~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~ 141 (232)
T cd03148 101 FIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAA 141 (232)
T ss_pred EECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHH
Confidence 35776 3333332 45667777777788999999999953
No 107
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=24.24 E-value=1.2e+02 Score=22.98 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
....+.+.+.++.+.+.+++++||..
T Consensus 139 ~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 139 AKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34455566666644568999999985
No 108
>PF13479 AAA_24: AAA domain
Probab=24.15 E-value=1.3e+02 Score=23.79 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHhhc-CCCeEEEEeChH
Q psy18151 156 GECYKDVLTRLELIILKIEH-SKSNLLIVSHPA 187 (204)
Q Consensus 156 gEs~~~~~~R~~~~l~~l~~-~~~~ilvVsHg~ 187 (204)
+--|.++..++..+++++.+ .+.+|++++|..
T Consensus 105 ~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah~~ 137 (213)
T PF13479_consen 105 GKGYGELQQEFMRFIDKLLNALGKNVIFTAHAK 137 (213)
T ss_pred cchHHHHHHHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 56788999999999998765 789999999964
No 109
>PRK10908 cell division protein FtsE; Provisional
Probab=24.02 E-value=1.2e+02 Score=23.75 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
...++...+.++.+.+.+|+++||..-
T Consensus 172 ~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (222)
T PRK10908 172 LSEGILRLFEEFNRVGVTVLMATHDIG 198 (222)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 355666677776555689999999864
No 110
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=24.01 E-value=1.3e+02 Score=23.28 Aligned_cols=26 Identities=4% Similarity=0.175 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
..+.+.+.+.++.+.+.+++++||..
T Consensus 146 ~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 146 SALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 34556666666654578999999985
No 111
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=23.86 E-value=1.2e+02 Score=23.88 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
..+.+...+.++.+.+.+|+++||..-
T Consensus 159 ~~~~l~~~L~~~~~~~~tiii~sH~~~ 185 (223)
T TIGR03740 159 GIQELRELIRSFPEQGITVILSSHILS 185 (223)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 355666666666555679999999864
No 112
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=23.81 E-value=1.2e+02 Score=24.26 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 163 LTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 163 ~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
...+...+.++.+.+.+|+++||..-.
T Consensus 187 ~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 187 LKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 445556666665457899999997643
No 113
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=23.80 E-value=1.2e+02 Score=24.13 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
...++...+.++.+.+.+|++|||..-.
T Consensus 174 ~~~~l~~~l~~~~~~g~tii~itH~~~~ 201 (226)
T cd03270 174 DNDRLIETLKRLRDLGNTVLVVEHDEDT 201 (226)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEeCHHH
Confidence 4566667777775567899999998753
No 114
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=23.72 E-value=1.2e+02 Score=23.91 Aligned_cols=27 Identities=11% Similarity=0.281 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
....+.+.+.++.+.+.+++++||..-
T Consensus 148 ~~~~l~~~l~~~~~~~~tvii~sH~~~ 174 (223)
T TIGR03771 148 TQELLTELFIELAGAGTAILMTTHDLA 174 (223)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 345566666666555779999999864
No 115
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=23.61 E-value=1.3e+02 Score=23.59 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
....+...+.++.+.+.+|+++||..-
T Consensus 167 ~~~~l~~~l~~~~~~~~tiii~sH~~~ 193 (222)
T cd03224 167 IVEEIFEAIRELRDEGVTILLVEQNAR 193 (222)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 345555666666545679999999864
No 116
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=23.57 E-value=1.2e+02 Score=24.49 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 155 QGECYKDVLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 155 ~gEs~~~~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
..-.|..+..++..++..+.+.+.+|++++|..
T Consensus 111 ~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe~ 143 (220)
T TIGR01618 111 ELQHYQKLDLWFLDLLTVLKESNKNIYATAWEL 143 (220)
T ss_pred ccccHHHHHHHHHHHHHHHHhCCCcEEEEEeec
Confidence 334577788888888888877888999999985
No 117
>PRK04155 chaperone protein HchA; Provisional
Probab=23.33 E-value=1e+02 Score=25.99 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=26.5
Q ss_pred CCCCCCC-HHHH--HHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 152 RWPQGEC-YKDV--LTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 152 ~~p~gEs-~~~~--~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
-.|||-. ..++ ...+.+++++..+.++.|..||||..
T Consensus 152 ~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa 191 (287)
T PRK04155 152 FIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA 191 (287)
T ss_pred EECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH
Confidence 3678743 3433 34567777777778899999999995
No 118
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.25 E-value=1.2e+02 Score=23.48 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
....+.+.++++.+.+.+|+++||-.-.
T Consensus 163 ~~~~~~~~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 163 NVELLKDVIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 3455556666665456799999998753
No 119
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=23.20 E-value=1.3e+02 Score=23.99 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
....+...+.++.+.+.+|+++||..-.
T Consensus 171 ~~~~l~~~l~~~~~~~~tiii~sH~~~~ 198 (240)
T PRK09493 171 LRHEVLKVMQDLAEEGMTMVIVTHEIGF 198 (240)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3455566666665557899999998754
No 120
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=22.95 E-value=1.3e+02 Score=23.39 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
....+...+.++.+.+.+|+++||..-.
T Consensus 161 ~~~~l~~~l~~~~~~~~tii~~tH~~~~ 188 (208)
T cd03268 161 GIKELRELILSLRDQGITVLISSHLLSE 188 (208)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 3455566666665556799999998753
No 121
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=22.92 E-value=1.3e+02 Score=24.33 Aligned_cols=28 Identities=11% Similarity=0.300 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
....+...+.++.+.+.+|++|||..-.
T Consensus 187 ~~~~l~~~l~~l~~~g~tiiivsH~~~~ 214 (257)
T PRK10619 187 LVGEVLRIMQQLAEEGKTMVVVTHEMGF 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 3455666666665557899999998653
No 122
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=22.87 E-value=1.1e+02 Score=26.77 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHhhc-CCCeEEEEeChH
Q psy18151 158 CYKDVLTRLELIILKIEH-SKSNLLIVSHPA 187 (204)
Q Consensus 158 s~~~~~~R~~~~l~~l~~-~~~~ilvVsHg~ 187 (204)
...+...+++..++++.+ .++.|+||+|..
T Consensus 98 ~~~~~~~~lk~~ie~~~~~~~~kv~li~HSm 128 (389)
T PF02450_consen 98 ERDEYFTKLKQLIEEAYKKNGKKVVLIAHSM 128 (389)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcEEEEEeCC
Confidence 455777888888888743 478999999954
No 123
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=22.81 E-value=1.3e+02 Score=23.97 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCeEEEEeChH--HHHHHHHHhhCC
Q psy18151 167 ELIILKIEHSKSNLLIVSHPA--VLRCLLGYFQEE 199 (204)
Q Consensus 167 ~~~l~~l~~~~~~ilvVsHg~--~i~~ll~~l~~~ 199 (204)
+.+++.+.+.+.+++|||.|. .|+.++..+.|.
T Consensus 79 Kef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgk 113 (220)
T COG4359 79 KEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGK 113 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccc
Confidence 456666666788999999997 888888877764
No 124
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=22.55 E-value=1.3e+02 Score=24.23 Aligned_cols=28 Identities=4% Similarity=0.020 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
+....+...+.++.+.+.+|+++||..-
T Consensus 171 ~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (256)
T TIGR03873 171 RAQLETLALVRELAATGVTVVAALHDLN 198 (256)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3455666777776555679999999864
No 125
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=22.43 E-value=1.3e+02 Score=24.18 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
+....+...+.++.+.+.+|+++||-.-
T Consensus 172 ~~~~~l~~~l~~l~~~~~tiii~tH~~~ 199 (255)
T PRK11231 172 NHQVELMRLMRELNTQGKTVVTVLHDLN 199 (255)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 3455666666666545679999999865
No 126
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=22.35 E-value=58 Score=24.29 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=13.3
Q ss_pred EEEeChHHHHHHHHHhhCCC
Q psy18151 181 LIVSHPAVLRCLLGYFQEEP 200 (204)
Q Consensus 181 lvVsHg~~i~~ll~~l~~~~ 200 (204)
+||||||...+.=+...|.|
T Consensus 75 lvIs~aG~~Ti~E~l~~g~P 94 (167)
T PF04101_consen 75 LVISHAGAGTIAEALALGKP 94 (167)
T ss_dssp EEEECS-CHHHHHHHHCT--
T ss_pred EEEeCCCccHHHHHHHcCCC
Confidence 89999997776666666665
No 127
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=22.32 E-value=72 Score=26.09 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCeEEEEeChHHHHH
Q psy18151 156 GECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRC 191 (204)
Q Consensus 156 gEs~~~~~~R~~~~l~~l~~~~~~ilvVsHg~~i~~ 191 (204)
+-|.++..+-++.+.+....-.+++++++||+.|..
T Consensus 197 ~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~ 232 (276)
T COG5564 197 ALSLADCVELIELAAEAARGVRKDVIPLCHGGPISM 232 (276)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhhceeeeccCCCcCC
Confidence 456777766666666665544578999999998753
No 128
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.96 E-value=1.3e+02 Score=24.91 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
....+...+.++.+.+.+|+++||..-
T Consensus 179 ~~~~l~~~l~~l~~~g~til~vtHd~~ 205 (288)
T PRK13643 179 ARIEMMQLFESIHQSGQTVVLVTHLMD 205 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 455566666766555779999999864
No 129
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=21.95 E-value=1.3e+02 Score=23.65 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhcC-CCeEEEEeChHH
Q psy18151 161 DVLTRLELIILKIEHS-KSNLLIVSHPAV 188 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~-~~~ilvVsHg~~ 188 (204)
+....+...+.++.+. +.+|+++||..-
T Consensus 179 ~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 207 (228)
T cd03257 179 SVQAQILDLLKKLQEELGLTLLFITHDLG 207 (228)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3456666777776544 679999999864
No 130
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=21.76 E-value=4.3e+02 Score=21.73 Aligned_cols=47 Identities=4% Similarity=-0.132 Sum_probs=36.7
Q ss_pred CHhhHHHHHHHHHHHHHhhhhhcCCCCCCEEEEeCchHHHHHHHHHhccCCCCeeE
Q psy18151 58 IPFVIRYCGRPLKAVVQSEINSILPLKPLKKWEITYQVRTESVVNINHKQVIWVDD 113 (204)
Q Consensus 58 t~~G~~qa~~~l~~~l~~~~~~~~~~~~~~i~sSpl~~Ra~TA~~i~~~~~~~v~~ 113 (204)
.+-+-++.. .+.+.+++. ++..||+.|.. ...+++.++++.|+++..
T Consensus 202 ~eps~~~l~-~l~~~ik~~-------~v~~if~e~~~-~~~~~~~la~~~g~~v~~ 248 (282)
T cd01017 202 VEPSPKQLA-ELVEFVKKS-------DVKYIFFEENA-SSKIAETLAKETGAKLLV 248 (282)
T ss_pred CCCCHHHHH-HHHHHHHHc-------CCCEEEEeCCC-ChHHHHHHHHHcCCcEEE
Confidence 455566777 777788887 89999999998 555888899988877644
No 131
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=21.75 E-value=1.4e+02 Score=23.76 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 163 LTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 163 ~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
...+.+.+.++.+.+.+|+++||..
T Consensus 173 ~~~l~~~l~~~~~~g~tiii~sH~~ 197 (241)
T PRK10895 173 VIDIKRIIEHLRDSGLGVLITDHNV 197 (241)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 4445556666655578999999986
No 132
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=21.68 E-value=1.4e+02 Score=24.00 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
....+...+.++.+.+.+|+++||..-
T Consensus 168 ~~~~l~~~L~~~~~~~~tvi~~sH~~~ 194 (248)
T PRK03695 168 QQAALDRLLSELCQQGIAVVMSSHDLN 194 (248)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 345666667666555679999999864
No 133
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=21.65 E-value=1.4e+02 Score=23.55 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
...++...+.++.+.+.+|+++||..-
T Consensus 177 ~~~~~~~~l~~~~~~~~tiii~sH~~~ 203 (224)
T cd03220 177 FQEKCQRRLRELLKQGKTVILVSHDPS 203 (224)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 345566666666555679999999854
No 134
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=21.61 E-value=1.5e+02 Score=22.93 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
....+...+.++.+.+.+|+++||..-.
T Consensus 139 ~~~~l~~~L~~~~~~~~tiii~sh~~~~ 166 (200)
T cd03217 139 ALRLVAEVINKLREEGKSVLIITHYQRL 166 (200)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 3555666666665456799999998653
No 135
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=21.48 E-value=1.4e+02 Score=23.83 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 163 LTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 163 ~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
...+...+.++.+.+.+|+++||...
T Consensus 180 ~~~l~~~l~~~~~~~~tvi~~tH~~~ 205 (250)
T PRK11264 180 VGEVLNTIRQLAQEKRTMVIVTHEMS 205 (250)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45555566666555679999999864
No 136
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=21.42 E-value=1.4e+02 Score=24.43 Aligned_cols=26 Identities=12% Similarity=0.293 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPA 187 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~ 187 (204)
....+...+.++.+.+.+|+++||..
T Consensus 177 ~~~~l~~~L~~~~~~g~tviivsH~~ 202 (272)
T PRK15056 177 TEARIISLLRELRDEGKTMLVSTHNL 202 (272)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 34556666666655567999999986
No 137
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=21.33 E-value=1.3e+02 Score=28.86 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
...++...+.++.+.+..|+||+||++-
T Consensus 30 ~l~~l~~~i~~l~~~g~~vilVsSGA~a 57 (715)
T TIGR01092 30 RLGSICEQLSELNSDGREVILVTSGAVA 57 (715)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEccchHH
Confidence 4455555555555678899999998876
No 138
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=21.28 E-value=1.6e+02 Score=22.68 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhcCC-CeEEEEeChHHH
Q psy18151 163 LTRLELIILKIEHSK-SNLLIVSHPAVL 189 (204)
Q Consensus 163 ~~R~~~~l~~l~~~~-~~ilvVsHg~~i 189 (204)
...+...+.++.+.+ .+|+++||-...
T Consensus 107 ~~~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 107 RLNAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 445556666664443 799999998643
No 139
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.17 E-value=1.4e+02 Score=24.45 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
+....+...+.++.+.+.+|+++||..-
T Consensus 179 ~~~~~l~~~l~~~~~~~~tiiivsH~~~ 206 (280)
T PRK13649 179 KGRKELMTLFKKLHQSGMTIVLVTHLMD 206 (280)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 3455566666666545679999999864
No 140
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=21.10 E-value=1.4e+02 Score=22.56 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhcC-CCeEEEEeChHHH
Q psy18151 161 DVLTRLELIILKIEHS-KSNLLIVSHPAVL 189 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~-~~~ilvVsHg~~i 189 (204)
+....+.+.+.++.+. +.+++++||..-.
T Consensus 131 ~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 131 AHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 3456666777776544 6799999998653
No 141
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=20.85 E-value=1.4e+02 Score=25.15 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 161 DVLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
.....+...+.++.+.+.+|++|||..-
T Consensus 199 ~~~~~l~~~l~~l~~~g~tiiivtHd~~ 226 (305)
T PRK13651 199 QGVKEILEIFDNLNKQGKTIILVTHDLD 226 (305)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeeCHH
Confidence 3455666777777556789999999864
No 142
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=20.81 E-value=1.3e+02 Score=24.29 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=25.2
Q ss_pred CCCCCCCH-HHHH--HHHHHHHHHhhcCCCeEEEEeChHHH
Q psy18151 152 RWPQGECY-KDVL--TRLELIILKIEHSKSNLLIVSHPAVL 189 (204)
Q Consensus 152 ~~p~gEs~-~~~~--~R~~~~l~~l~~~~~~ilvVsHg~~i 189 (204)
-.|||-.. .++. ..+.+++++..+.++.|..||||..+
T Consensus 99 ~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~ 139 (231)
T cd03147 99 FVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAI 139 (231)
T ss_pred EECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHH
Confidence 35777432 2332 34666666666778999999999953
No 143
>PF12843 DUF3820: Protein of unknown function (DUF3820); InterPro: IPR024530 This protein family is mostly found in bacteria and is currently functionally uncharacterised.
Probab=20.81 E-value=1.3e+02 Score=19.53 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=26.3
Q ss_pred eeCcccCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHH
Q psy18151 120 IHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVL 163 (204)
Q Consensus 120 ~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~ 163 (204)
+.||.+.|....++ |..|-.|.... .+|.|+--..+.
T Consensus 14 MPFGKyKG~~l~dL----P~~YL~W~~~k---GfP~GkLG~~l~ 50 (67)
T PF12843_consen 14 MPFGKYKGRPLADL----PESYLVWFARK---GFPKGKLGELLA 50 (67)
T ss_pred CCCcccCCcCHhhC----CHHHHHHHHHc---CCCchHHHHHHH
Confidence 67999999998875 66677787765 367666544433
No 144
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=20.75 E-value=3.1e+02 Score=19.27 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhc--CCCeEEEEeC--hHHHHHHHHHhh
Q psy18151 162 VLTRLELIILKIEH--SKSNLLIVSH--PAVLRCLLGYFQ 197 (204)
Q Consensus 162 ~~~R~~~~l~~l~~--~~~~ilvVsH--g~~i~~ll~~l~ 197 (204)
...++...++++.+ +..+|+|++| ||.+..+++..+
T Consensus 46 ~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 46 LYDQILDALKELVEKYPDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhh
Confidence 34455555555532 3479999999 567776666554
No 145
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.41 E-value=1.4e+02 Score=23.64 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhc-CCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEH-SKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~-~~~~ilvVsHg~~ 188 (204)
....+...+.++.+ .+.+|++|||..-
T Consensus 171 ~~~~l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 171 ASGVIDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 45556666666654 4679999999874
No 146
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.38 E-value=1.6e+02 Score=24.11 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
....+...+.++.+.+.+|+++||..-
T Consensus 171 ~~~~l~~~l~~~~~~g~tii~vtH~~~ 197 (271)
T PRK13638 171 GRTQMIAIIRRIVAQGNHVIISSHDID 197 (271)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 345566667666545679999999864
No 147
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.22 E-value=1.4e+02 Score=23.69 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhc-CCCeEEEEeChHH
Q psy18151 161 DVLTRLELIILKIEH-SKSNLLIVSHPAV 188 (204)
Q Consensus 161 ~~~~R~~~~l~~l~~-~~~~ilvVsHg~~ 188 (204)
+....+...+.++.+ .+.+|+++||..-
T Consensus 170 ~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 170 KVRKELRRWLRRLHDELHVTTVFVTHDQE 198 (239)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 345566667777654 3679999999864
No 148
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=20.01 E-value=1.5e+02 Score=24.77 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeChHH
Q psy18151 162 VLTRLELIILKIEHSKSNLLIVSHPAV 188 (204)
Q Consensus 162 ~~~R~~~~l~~l~~~~~~ilvVsHg~~ 188 (204)
....+...+.++.+.+.+|+++||..-
T Consensus 159 ~~~~l~~~l~~~~~~g~tvi~~sH~~~ 185 (302)
T TIGR01188 159 TRRAIWDYIRALKEEGVTILLTTHYME 185 (302)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 345666677776555779999999763
Done!