RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18151
(204 letters)
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 90.1 bits (223), Expect = 2e-21
Identities = 35/92 (38%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 111 VDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELII 170
+ K L++I AG+CE TY EI ++ ++ DK+ R+P+GE Y+D++ RLE +I
Sbjct: 318 YEQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVI 377
Query: 171 LKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPD 202
+++E + N+L++ H AV+RCLL YF ++ +
Sbjct: 378 MELERQE-NVLVICHQAVMRCLLAYFLDKAAE 408
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 89.8 bits (222), Expect = 3e-21
Identities = 39/92 (42%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 111 VDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELII 170
+ KAL++I AG+CE TY EI + +Y DK+Y R+P GE Y+D++ RLE +I
Sbjct: 315 YEQWKALNEIDAGVCEELTYEEIRDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVI 374
Query: 171 LKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPD 202
+++E + N+L++ H AVLRCLL YF ++ +
Sbjct: 375 MELERQE-NVLVICHQAVLRCLLAYFLDKSAE 405
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 61.5 bits (150), Expect = 4e-12
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 114 HKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKI 173
+ L +IH G EG+T+ EI + +GE + DV R + I
Sbjct: 77 DERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSI 136
Query: 174 --EHSKSNLLIVSHPAVLRCLLGYFQEEPPD 202
H +LIV+H VL+ L+ F++ P D
Sbjct: 137 VDRHEGETVLIVTHGVVLKTLMAAFKDTPLD 167
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate
mutase, structural genomics, PSI, structure initiative;
2.20A {Mycobacterium tuberculosis}
Length = 208
Score = 53.8 bits (130), Expect = 2e-09
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 111 VDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELII 170
V L + G EG T +I + + T P GE V R + +
Sbjct: 84 VTG--LLAEWDYGSYEGLTTPQIRESEPDWLVWTHGC------PAGESVAQVNDRADSAV 135
Query: 171 LKI--EHSKSNLLIVSHPAVLRCLLGYFQEEPPD 202
S ++L VSH R ++ + + P
Sbjct: 136 ALALEHMSSRDVLFVSHGHFSRAVITRWVQLPLA 169
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.80A {Vibrio parahaemolyticus}
Length = 213
Score = 52.3 bits (126), Expect = 9e-09
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 111 VDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELII 170
+D L ++ G +G + + + + ++ P E R+
Sbjct: 77 TED--DLQEMDFGDFDGMPFDLLTEHW-KKLDAFWQSPAHHSLPNAESLSTFSQRVSRAW 133
Query: 171 LKI-EHSKSNLLIVSHPAVLRCLLGYFQEEPPD 202
+I NLLIV+H V+R +L +
Sbjct: 134 SQIINDINDNLLIVTHGGVIRIILAHVLGVDWR 166
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.40A {Thermus
thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A
2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A
2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A
2enw_A ...
Length = 177
Score = 51.5 bits (124), Expect = 1e-08
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 120 IHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSN 179
IH G EG + + +Y + P GE R+ + ++
Sbjct: 75 IHFGALEGALWETLD----PRYKEALLRFQGFHPPGGESLSAFQERVFRFLEGLKA---P 127
Query: 180 LLIVSHPAVLRCLLGYFQEEP 200
++ +H V+R +L E+
Sbjct: 128 AVLFTHGGVVRAVLRALGEDG 148
>3r7a_A Phosphoglycerate mutase, putative; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE EPE; 1.84A {Bacillus anthracis}
Length = 237
Score = 49.2 bits (118), Expect = 1e-07
Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 19/104 (18%)
Query: 120 IHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRW--------------PQGECYKDVLTR 165
++ GI EG+ ++ T ++ Q E ++ TR
Sbjct: 98 LNFGIFEGEKLDNMWDAVGKAAGVTSPEELLKFSIQEVIDLIRAADPTKQAEDWELFSTR 157
Query: 166 L-----ELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPDMR 204
+ ++ + N+L+V H ++ L+ +
Sbjct: 158 IKAEIDKISEEAAKDGGGNVLVVVHGLLITTLIEMLDSSKTKLG 201
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM,
hydrolase; 1.76A {Bombyx mori}
Length = 263
Score = 48.9 bits (116), Expect = 2e-07
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 142 IDTRADKFYNRWPQGECYKDVLTR----LELIILKIEHSKSNLLIVSHPAVLRCLLGYFQ 197
+D + E + R ++ + E N++ + H L ++G
Sbjct: 145 VDMTYKPYVEMDASAETMDEFFKRGEVAMQAAVNDTEKDGGNVIFIGHAITLDQMVGALH 204
Query: 198 EEPPDMR 204
DM
Sbjct: 205 RLRDDME 211
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Length = 273
Score = 44.7 bits (105), Expect = 6e-06
Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 4/78 (5%)
Query: 129 TYTEIYTNHCAQYIDTRADKFYNRWPQGE----CYKDVLTRLELIILKIEHSKSNLLIVS 184
T E+ + +D R E + + II LIVS
Sbjct: 142 TLEELKEANFNVDLDYRPALPRCSLMPAESYDQYVERCAVSMGQIINTCPQDMGITLIVS 201
Query: 185 HPAVLRCLLGYFQEEPPD 202
H + L PP
Sbjct: 202 HSSALDSCTRPLLGLPPR 219
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1,
signaling protein, low PH, alternative splicing,
cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus}
PDB: 2ikq_A 2h0q_A
Length = 264
Score = 44.2 bits (104), Expect = 8e-06
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 129 TYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTR----LELIILKIEHSKSNLLIVS 184
+E+ + + R ++ E Y + R + II + + +N+LIV+
Sbjct: 133 PPSELAAANLSVDTTYRPHIPVSKLAISESYDTYINRSFQVTKEIISECKSKGNNILIVA 192
Query: 185 HPAVLRCLLGYFQEEPPD 202
H + L Q P
Sbjct: 193 HASSLEACTCQLQGLSPQ 210
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU
proteolysis, structural genomics, PSI protein structure
initiative; 1.80A {Agrobacterium tumefaciens str}
Length = 219
Score = 43.3 bits (102), Expect = 2e-05
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 18/101 (17%)
Query: 109 IWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYN----RWPQGECYKDVLT 164
I + + A+ + E + AD F+ + E D
Sbjct: 91 IEIIE--AMHENDRSATGFLPPPEF---------EKAADWFFAHPEESFQGWERAIDAQA 139
Query: 165 RLELIILKI--EHS-KSNLLIVSHPAVLRCLLGYFQEEPPD 202
R+ + + H + + V H V L + +
Sbjct: 140 RIVEAVKAVLDRHDARQPIAFVGHGGVGTLLKCHIEGRGIS 180
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote
structure initiative; 1.75A {Saccharomyces cerevisiae}
PDB: 3lg2_A 3oi7_A* 3ll4_A*
Length = 265
Score = 42.0 bits (99), Expect = 4e-05
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 15/115 (13%)
Query: 101 VNINHKQVIWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRW----PQG 156
++ + I V L + G EG EI ++ +D + +N W G
Sbjct: 81 LSDEQRAKIRVVVDDDLREWEYGDYEGMLTREIIELRKSRGLDKE--RPWNIWRDGCENG 138
Query: 157 ECYKDVLTRLELIILKI---------EHSKSNLLIVSHPAVLRCLLGYFQEEPPD 202
E + + RL I +I E S++++ +H LR +
Sbjct: 139 ETTQQIGLRLSRAIARIQNLHRKHQSEGRASDIMVFAHGHALRYFAAIWFGLGVQ 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 4e-04
Identities = 39/222 (17%), Positives = 71/222 (31%), Gaps = 58/222 (26%)
Query: 4 W-LLHFEVNICKSFVQEQVFSSSSEFGLKSSLGRPGLDKSFYGDRHRSEYNSPSTIPFVI 62
W LL + + + FV+E L+ + F ++E PS + +
Sbjct: 69 WTLLSKQEEMVQKFVEE---------VLRI-------NYKFLMSPIKTEQRQPSMMTRMY 112
Query: 63 RYCGRPLKAVVQS----EINSILPLKPLKKWEITYQVRTESVVNINH------KQVIWVD 112
L Q ++ + P L++ ++R V I K + +D
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLI-DGVLGSGKTWVALD 169
Query: 113 ---DHKALDDIHAGI--------CEGQTYTEIYTNHCAQYID----TRADKFYNRWPQGE 157
+K + I +T E+ Q ID +R+D N +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIH 228
Query: 158 CYKDVLTRLELIILKIEHSKSNLLI---VSHPAVL-----RC 191
+ L RL LK + ++ LL+ V + C
Sbjct: 229 SIQAELRRL----LKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced
glycolysis and apoptosis regulator, CAsp target,
structural genomics medical relevance; HET: MSE; 1.75A
{Homo sapiens}
Length = 275
Score = 36.7 bits (85), Expect = 0.003
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 10/58 (17%)
Query: 154 PQGECYKDVLTRL-----ELIILKIEHSKS-----NLLIVSHPAVLRCLLGYFQEEPP 201
C + L + S ++L+VSH A +R L YF +
Sbjct: 162 SPSNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLK 219
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio}
PDB: 3e9d_A 3e9e_A
Length = 265
Score = 36.4 bits (84), Expect = 0.004
Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 46/123 (37%)
Query: 115 KALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRW-----PQGECYKDVLTRL--- 166
L + G+ EG+ + A+ P GE + V TR
Sbjct: 85 PLLRERGFGVAEGRPKEHL---------KNMANAAGQSCRDYTPPGGETLEQVKTRFKMF 135
Query: 167 -----------------------------ELIILKIEHSKSNLLIVSHPAVLRCLLGYFQ 197
L ++ + L+VSH A +R + +
Sbjct: 136 LKSLFQRMFEEHGSALSSVPSEADQPVIAGLADDGAQNVPVHALMVSHGAFIRISVRHLV 195
Query: 198 EEP 200
E+
Sbjct: 196 EDL 198
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural
genomics, isomerase, structural GE consortium, SGC;
2.40A {Plasmodium falciparum}
Length = 214
Score = 35.9 bits (83), Expect = 0.005
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 5/57 (8%)
Query: 152 RWPQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPDM 203
+ K+ R+ L++ H V+R L + P
Sbjct: 117 SKFDAQKIKEDNKRINKAYETYFYKPSGDEDEYQLVICHGNVIRYFLCRALQIPLFA 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.048
Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 54/172 (31%)
Query: 30 LKSSLGRPGLDKSFYGDRHRS--EYN---SPS-TIPF-----VIRYCGRPLK-AVVQSEI 77
LKS P D +F G H S EY S + + V+ Y G ++ AV + E+
Sbjct: 1747 LKSKGLIPA-DATFAG--H-SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 78 NSILPLKPLKKWEITYQVRTESVVNINHKQVIWVDDHKALDDIHAGICEGQTYT-EIYTN 136
++ IN +V +AL + + + + EI N
Sbjct: 1803 GR----------------SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI-VN 1845
Query: 137 H-CA--QYI---DTRA-DKFYNRWPQGECYKDVLTRLEL--I-ILKIEHSKS 178
+ QY+ D RA D N VL ++L I I++++ S S
Sbjct: 1846 YNVENQQYVAAGDLRALDTVTN----------VLNFIKLQKIDIIELQKSLS 1887
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate
mutase family member 5, BXLBV68, MGC protein, structural
genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo
sapiens} PDB: 3o0t_A
Length = 202
Score = 30.6 bits (69), Expect = 0.27
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 145 RADKFYNRW-PQGECYKDVLTRLELIILKI-------EHSKSNLLIVSHPAVLRCLLGYF 196
D + W P+ Y + R+E + S + + H V+R ++
Sbjct: 95 EPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFICHANVIRYIVCRA 154
Query: 197 QEEPPDM 203
+ PP+
Sbjct: 155 LQFPPEG 161
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET:
3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1
PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Length = 240
Score = 30.2 bits (69), Expect = 0.33
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 154 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 195
P+ E V+ RL ++I + K ++I +H LR L+ +
Sbjct: 146 PETESLALVIDRLLPYWQDVIAKDLLSGK-TVMIAAHGNSLRGLVKH 191
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural
genomics, medical STRU genomics of pathogenic protozoa,
MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Length = 258
Score = 30.2 bits (69), Expect = 0.35
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 154 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 195
P EC KD + R+ + I I +K +++ +H LR L+ +
Sbjct: 157 PFTECLKDTVERVLPFWFDHIAPDILANK-KVMVAAHGNSLRGLVKH 202
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and
gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia
coli} SCOP: c.60.1.1 PDB: 1e59_A*
Length = 249
Score = 30.2 bits (69), Expect = 0.36
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 154 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 195
P E + R+ E I+ +++ + ++I +H LR L+ Y
Sbjct: 148 PLTESLALTIDRVIPYWNETILPRMKSGE-RVIIAAHGNSLRALVKY 193
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat;
phosphoglyceromutase, decode, SBRI, niaid, UWPPG,
glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia
pseudomallei} PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A*
3lnt_A
Length = 257
Score = 30.2 bits (69), Expect = 0.37
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 154 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 195
P EC KD + R+ E I ++ K +LI +H LR L+ Y
Sbjct: 155 PLTECLKDTVARVLPLWNESIAPAVKAGK-QVLIAAHGNSLRALIKY 200
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria,
glycolysis, I structural genomics consortium, SGC; 2.01A
{Cryptosporidium parvum}
Length = 267
Score = 30.2 bits (69), Expect = 0.40
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 154 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 195
P EC KD + R+ ++I I K ++L+ +H LR LL
Sbjct: 166 PTTECLKDTVERVKPYFEDVIAPSIMSGK-SVLVSAHGNSLRALLYL 211
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET:
CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Length = 262
Score = 30.2 bits (69), Expect = 0.42
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 137 HCAQYIDTR-ADKFYNRWPQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLR 190
+ D R AD ++ P E KD + R E I+ +I+ K +LI +H LR
Sbjct: 133 YSNISKDRRYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGK-RVLIAAHGNSLR 191
Query: 191 CLLGY 195
++ +
Sbjct: 192 GIVKH 196
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR
{Schizosaccharomyces pombe} SCOP: c.60.1.1
Length = 211
Score = 29.8 bits (68), Expect = 0.42
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 154 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 195
P GE KD R+ I+ I + +LI +H LR L+
Sbjct: 128 PNGESLKDTAERVLPYYKSTIVPHILKGE-KVLIAAHGNSLRALIMD 173
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A
{Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A*
2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Length = 267
Score = 30.2 bits (69), Expect = 0.43
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 154 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 195
P+ E KDVL RL E I ++ K +LI +H R LL +
Sbjct: 153 PRSESLKDVLERLLPYWNERIAPEVLRGK-TILISAHGNSSRALLKH 198
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.30A {Borrelia burgdorferi}
Length = 274
Score = 29.9 bits (68), Expect = 0.46
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 154 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 195
P EC KD + R+ + I ++ K +++ +H LR L+ Y
Sbjct: 173 PSTECLKDTVARVIPYWTDEIAKEVLEGK-KVIVAAHGNSLRALVKY 218
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate
mutase, SH3 domain binding, structural genom TBSGC;
1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Length = 265
Score = 29.4 bits (67), Expect = 0.59
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 154 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 195
P EC DV+ R ++I+ + K +LIV+H LR L+ +
Sbjct: 148 PLTECLADVVARFLPYFTDVIVGDLRVGK-TVLIVAHGNSLRALVKH 193
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.45A {Mycobacterium leprae}
Length = 268
Score = 29.5 bits (67), Expect = 0.62
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 154 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 195
P EC DV+TR ++I+ + + +LIV+H LR L+ +
Sbjct: 171 PLTECLADVVTRFLPYFTDVIVPDLRTGR-TVLIVAHGNSLRALVKH 216
>1i5p_A Pesticidial crystal protein CRY2AA; helical bundle, beta prism,
lectin-like beta sandwich, jelly roll, toxin; 2.20A
{Bacillus thuringiensis serovarkurstaki} SCOP: b.18.1.3
b.77.2.1 f.1.3.1
Length = 633
Score = 27.6 bits (60), Expect = 3.2
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 128 QTYTEIYTNHCAQYIDTRADKFYNRW 153
+ YT Y+N+C T R
Sbjct: 213 RNYTRDYSNYCINTYQTAFRGLNTRL 238
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains;
HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A*
3ipp_A
Length = 423
Score = 26.6 bits (59), Expect = 6.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 142 IDTRADKFYNRWPQ 155
IDTR FYN WPQ
Sbjct: 23 IDTRPSAFYNGWPQ 36
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding;
2.40A {Homo sapiens} PDB: 4apf_B
Length = 364
Score = 26.4 bits (57), Expect = 6.6
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 109 IWVDDHKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRW 153
IW A+ +I G ++ E+Y N + +K Y
Sbjct: 16 IWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGL 60
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger,
propeller cluster, helical repeats, cullin repeats,
protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP:
a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Length = 759
Score = 26.3 bits (57), Expect = 9.9
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 104 NHKQVIWVDDHKALDDIHAGICEGQTYTEIYT---NHCAQYIDTRADKFYNRWPQGECYK 160
N+ Q W H+A+ + + E+Y N C+ + Y + + +
Sbjct: 57 NYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHK---VSPMLYKQL--RQACE 111
Query: 161 DVLTRLELIILKIEHSKSNLL 181
D + L + L
Sbjct: 112 DHVQAQILPFREDSLDSVLFL 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.428
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,059,879
Number of extensions: 166357
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 37
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.6 bits)