BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy18155
         (185 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
          Length = 1230

 Score =  170 bits (431), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/185 (52%), Positives = 107/185 (57%), Gaps = 51/185 (27%)

Query: 1    TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDS 60
            TRNVVAECLGKLTLIDP  LLPRL+  L S S+  R++                      
Sbjct: 947  TRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSV--------------------- 985

Query: 61   DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSAL 120
                  V  V F  + H                        PQ IDPLL+  IGDFL  L
Sbjct: 986  ------VTAVKFTISDH------------------------PQPIDPLLKNCIGDFLKTL 1015

Query: 121  KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTV 180
            +D DLNVRRVALV FNSAAHNKPSL+ DLLD+VLP LY ET V+K LIREVEMGPFKHTV
Sbjct: 1016 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTV 1075

Query: 181  DDGLD 185
            DDGLD
Sbjct: 1076 DDGLD 1080


>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
 pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
          Length = 1253

 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/185 (51%), Positives = 106/185 (57%), Gaps = 51/185 (27%)

Query: 1    TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDS 60
            TRNVV ECLGKLTLIDP  LLPRL+  L S S+  R++                      
Sbjct: 970  TRNVVVECLGKLTLIDPETLLPRLKGYLISGSSYARSSV--------------------- 1008

Query: 61   DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSAL 120
                  V  V F  + H                        PQ IDPLL+  IGDFL  L
Sbjct: 1009 ------VTAVKFTISDH------------------------PQPIDPLLKNCIGDFLKTL 1038

Query: 121  KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTV 180
            +D DLNVRRVALV FNSAAHNKPSL+ DLLD+VLP LY ET V+K LIREVEMGPFKHTV
Sbjct: 1039 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTV 1098

Query: 181  DDGLD 185
            DDGLD
Sbjct: 1099 DDGLD 1103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,746,246
Number of Sequences: 62578
Number of extensions: 168821
Number of successful extensions: 513
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 17
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)