BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18155
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P97536|CAND1_RAT Cullin-associated NEDD8-dissociated protein 1 OS=Rattus norvegicus
GN=Cand1 PE=1 SV=1
Length = 1230
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/185 (52%), Positives = 107/185 (57%), Gaps = 51/185 (27%)
Query: 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDS 60
TRNVVAECLGKLTLIDP LLPRL+ L S S+ R++
Sbjct: 947 TRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSV--------------------- 985
Query: 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSAL 120
V V F + H PQ IDPLL+ IGDFL L
Sbjct: 986 ------VTAVKFTISDH------------------------PQPIDPLLKNCIGDFLKTL 1015
Query: 121 KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTV 180
+D DLNVRRVALV FNSAAHNKPSL+ DLLDSVLP LY ET V+K LIREVEMGPFKHTV
Sbjct: 1016 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDSVLPHLYNETKVRKELIREVEMGPFKHTV 1075
Query: 181 DDGLD 185
DDGLD
Sbjct: 1076 DDGLD 1080
>sp|Q6ZQ38|CAND1_MOUSE Cullin-associated NEDD8-dissociated protein 1 OS=Mus musculus
GN=Cand1 PE=2 SV=2
Length = 1230
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/185 (52%), Positives = 107/185 (57%), Gaps = 51/185 (27%)
Query: 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDS 60
TRNVVAECLGKLTLIDP LLPRL+ L S S+ R++
Sbjct: 947 TRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSV--------------------- 985
Query: 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSAL 120
V V F + H PQ IDPLL+ IGDFL L
Sbjct: 986 ------VTAVKFTISDH------------------------PQPIDPLLKNCIGDFLKTL 1015
Query: 121 KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTV 180
+D DLNVRRVALV FNSAAHNKPSL+ DLLDSVLP LY ET V+K LIREVEMGPFKHTV
Sbjct: 1016 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDSVLPHLYNETKVRKELIREVEMGPFKHTV 1075
Query: 181 DDGLD 185
DDGLD
Sbjct: 1076 DDGLD 1080
>sp|Q86VP6|CAND1_HUMAN Cullin-associated NEDD8-dissociated protein 1 OS=Homo sapiens
GN=CAND1 PE=1 SV=2
Length = 1230
Score = 170 bits (431), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/185 (52%), Positives = 107/185 (57%), Gaps = 51/185 (27%)
Query: 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDS 60
TRNVVAECLGKLTLIDP LLPRL+ L S S+ R++
Sbjct: 947 TRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSV--------------------- 985
Query: 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSAL 120
V V F + H PQ IDPLL+ IGDFL L
Sbjct: 986 ------VTAVKFTISDH------------------------PQPIDPLLKNCIGDFLKTL 1015
Query: 121 KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTV 180
+D DLNVRRVALV FNSAAHNKPSL+ DLLD+VLP LY ET V+K LIREVEMGPFKHTV
Sbjct: 1016 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTV 1075
Query: 181 DDGLD 185
DDGLD
Sbjct: 1076 DDGLD 1080
>sp|A7MBJ5|CAND1_BOVIN Cullin-associated NEDD8-dissociated protein 1 OS=Bos taurus GN=CAND1
PE=2 SV=1
Length = 1230
Score = 170 bits (431), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/185 (52%), Positives = 107/185 (57%), Gaps = 51/185 (27%)
Query: 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDS 60
TRNVVAECLGKLTLIDP LLPRL+ L S S+ R++
Sbjct: 947 TRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSV--------------------- 985
Query: 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSAL 120
V V F + H PQ IDPLL+ IGDFL L
Sbjct: 986 ------VTAVKFTISDH------------------------PQPIDPLLKNCIGDFLKTL 1015
Query: 121 KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTV 180
+D DLNVRRVALV FNSAAHNKPSL+ DLLD+VLP LY ET V+K LIREVEMGPFKHTV
Sbjct: 1016 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTV 1075
Query: 181 DDGLD 185
DDGLD
Sbjct: 1076 DDGLD 1080
>sp|Q5R6L5|CAND1_PONAB Cullin-associated NEDD8-dissociated protein 1 OS=Pongo abelii
GN=CAND1 PE=2 SV=1
Length = 1230
Score = 170 bits (431), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/185 (52%), Positives = 107/185 (57%), Gaps = 51/185 (27%)
Query: 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDS 60
TRNVVAECLGKLTLIDP LLPRL+ L S S+ R++
Sbjct: 947 TRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSV--------------------- 985
Query: 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSAL 120
V V F + H PQ IDPLL+ IGDFL L
Sbjct: 986 ------VTAVKFTISDH------------------------PQPIDPLLKNCIGDFLKTL 1015
Query: 121 KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTV 180
+D DLNVRRVALV FNSAAHNKPSL+ DLLD+VLP LY ET V+K LIREVEMGPFKHTV
Sbjct: 1016 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTV 1075
Query: 181 DDGLD 185
DDGLD
Sbjct: 1076 DDGLD 1080
>sp|O75155|CAND2_HUMAN Cullin-associated NEDD8-dissociated protein 2 OS=Homo sapiens
GN=CAND2 PE=1 SV=3
Length = 1236
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 103/185 (55%), Gaps = 51/185 (27%)
Query: 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDS 60
TR VVAEC+GKL L++PS LLPRL++ L + P R T+
Sbjct: 952 TRGVVAECIGKLVLVNPSFLLPRLRKQLAAGR-----------PHTRSTV---------- 990
Query: 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSAL 120
+ V F L+ D +P IDPLL+ IG+F+ +L
Sbjct: 991 ------ITAVKF---------LISD---------------QPHPIDPLLKSFIGEFMESL 1020
Query: 121 KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTV 180
+D DLNVRR L FNSA HNKPSLV DLLD +LP LY ET +++ LIREVEMGPFKHTV
Sbjct: 1021 QDPDLNVRRATLAFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTV 1080
Query: 181 DDGLD 185
DDGLD
Sbjct: 1081 DDGLD 1085
>sp|Q6ZQ73|CAND2_MOUSE Cullin-associated NEDD8-dissociated protein 2 OS=Mus musculus
GN=Cand2 PE=1 SV=2
Length = 1235
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 101/185 (54%), Gaps = 51/185 (27%)
Query: 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDS 60
TR VVAEC+GKL ++P LLPR ++ L + R+T ++A+K
Sbjct: 951 TRCVVAECIGKLVFVNPPYLLPRFRKQLAAGQPYTRST--------------VITAVK-- 994
Query: 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSAL 120
L+ D +P SIDPLL+ I +F+ +L
Sbjct: 995 --------------------FLISD---------------QPHSIDPLLKSFIAEFMESL 1019
Query: 121 KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTV 180
+D DLNVRR L FNSA HNKPSLV DLLD +LP LY ET +++ LIREVEMGPFKHTV
Sbjct: 1020 QDPDLNVRRATLTFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTV 1079
Query: 181 DDGLD 185
DDGLD
Sbjct: 1080 DDGLD 1084
>sp|Q9R0L4|CAND2_RAT Cullin-associated NEDD8-dissociated protein 2 OS=Rattus norvegicus
GN=Cand2 PE=1 SV=1
Length = 1273
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 101/185 (54%), Gaps = 51/185 (27%)
Query: 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDS 60
TR VVAEC+GKL ++P LLPR ++ L + R+T ++A+K
Sbjct: 989 TRCVVAECIGKLVFVNPPFLLPRFRKQLAAGQPYTRST--------------VITAVK-- 1032
Query: 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSAL 120
L+ D +P SIDPLL+ I +F+ +L
Sbjct: 1033 --------------------FLISD---------------QPHSIDPLLKSFIAEFMESL 1057
Query: 121 KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTV 180
+D DLNVRR L FNSA HNKPSLV DLLD +LP LY ET +++ LIREVEMGPFKHTV
Sbjct: 1058 QDPDLNVRRATLTFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTV 1117
Query: 181 DDGLD 185
DDGLD
Sbjct: 1118 DDGLD 1122
>sp|Q86KD1|CAND1_DICDI Cullin-associated NEDD8-dissociated protein 1 OS=Dictyostelium
discoideum GN=cand1 PE=3 SV=1
Length = 1238
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 93/185 (50%), Gaps = 51/185 (27%)
Query: 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDS 60
TRN+VAECLGKL++I+P+ ++P+L E +KS S PL R TI
Sbjct: 953 TRNIVAECLGKLSMIEPNEIIPKLVEKIKSPS-----------PLERSTI---------- 991
Query: 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSAL 120
V + F S NK + +D L I FLS L
Sbjct: 992 ------VTSIKF-SIMENK-----------------------EVVDQYLAPNISQFLSLL 1021
Query: 121 KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTV 180
D DL VRR AL++ N AHNKP+L+ + L LP LY +K LIREV++GPFKH V
Sbjct: 1022 HDGDLIVRRSALLSLNYIAHNKPNLIRNDLSVYLPILYNNAKIKPELIREVDLGPFKHKV 1081
Query: 181 DDGLD 185
DDG++
Sbjct: 1082 DDGIE 1086
>sp|Q8L5Y6|CAND1_ARATH Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana
GN=CAND1 PE=1 SV=1
Length = 1219
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 93/184 (50%), Gaps = 51/184 (27%)
Query: 2 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSD 61
RNVVAECLGK+ LI+P L+P LQ S +A R T ++A+K S
Sbjct: 948 RNVVAECLGKMALIEPEKLVPALQVRTTSPAAFTRAT--------------VVTAVKYS- 992
Query: 62 LNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALK 121
V++ +P+ +D ++ I FL +K
Sbjct: 993 ---------------------VVE---------------RPEKLDEIIFPQISSFLMLIK 1016
Query: 122 DSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTVD 181
D D +VRR A+ A ++ AH KP+L+ LL +LP LY +T +KK LIR V++GPFKH VD
Sbjct: 1017 DGDRHVRRAAVSALSTFAHYKPNLIKGLLPELLPLLYDQTVIKKELIRTVDLGPFKHVVD 1076
Query: 182 DGLD 185
DGL+
Sbjct: 1077 DGLE 1080
>sp|Q9P3A8|CAND1_SCHPO Cullin-associated NEDD8-dissociated protein 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=knd1 PE=3 SV=1
Length = 1220
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 120 LKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHT 179
++ DL V + L S N+ S + D+ + +L L ++++V + + V+MGPF+H
Sbjct: 1014 FQNPDLEVSQETLQVIISVIKNRRSCIADVYNELLQGLISKSSVDSSNVHVVQMGPFQHV 1073
Query: 180 VDDGLD 185
VD+ ++
Sbjct: 1074 VDNSIN 1079
>sp|Q820I0|RNC_NITEU Ribonuclease 3 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=rnc PE=3 SV=1
Length = 245
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 73 NSAAHNKPSLVIDLLDSVLPQLYAET--AVKPQSI----DPLLRQ----TIGDFLSALKD 122
S H++PS++ + +++++ +Y E+ AV Q I +PL+RQ T G L
Sbjct: 120 KSGGHHRPSILANAVEAIIGAIYLESGFAVVEQVIVALYEPLIRQLDPDTSGKDSKTLLQ 179
Query: 123 SDLNVRRVALVAFNS-AAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVE 172
L R++AL ++ A P + ++ V+P T + T R E
Sbjct: 180 EYLQSRKIALPEYSVLLAQGDPHAQVFHVECVIPGFGIRTRGEGTSRRRAE 230
>sp|B2G826|RNC_LACRJ Ribonuclease 3 OS=Lactobacillus reuteri (strain JCM 1112) GN=rnc
PE=3 SV=1
Length = 233
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 137 SAAHNKPSLVIDLLDSVLPQLY-------AETAVKKTLIREVEMGPFKHTVD 181
+ A +P L+ D+ +S + LY E V++ + +++MG F H VD
Sbjct: 110 AGARERPGLLCDIFESFIGALYLDQGRPAVEKFVQRVIFPKLDMGWFDHAVD 161
>sp|A5VKP2|RNC_LACRD Ribonuclease 3 OS=Lactobacillus reuteri (strain DSM 20016) GN=rnc
PE=3 SV=1
Length = 233
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 137 SAAHNKPSLVIDLLDSVLPQLY-------AETAVKKTLIREVEMGPFKHTVD 181
+ A +P L+ D+ +S + LY E V++ + +++MG F H VD
Sbjct: 110 AGARERPGLLCDIFESFIGALYLDQGRPAVEKFVQRVIFPKLDMGWFDHAVD 161
>sp|A0RRM7|RNC_CAMFF Ribonuclease 3 OS=Campylobacter fetus subsp. fetus (strain 82-40)
GN=rnc PE=3 SV=1
Length = 223
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 20/74 (27%)
Query: 104 SIDPLLRQTIGDFL--SALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAET 161
SI +R +GDFL SA +D N+ NKPSLV D L++++ +Y E+
Sbjct: 82 SISSQIR--LGDFLYLSAAED-------------NNNGRNKPSLVSDALEALMGAIYLES 126
Query: 162 ---AVKKTLIREVE 172
AVKK I +E
Sbjct: 127 GLEAVKKIFINLLE 140
>sp|A1SL56|HIS6_NOCSJ Imidazole glycerol phosphate synthase subunit HisF OS=Nocardioides
sp. (strain BAA-499 / JS614) GN=hisF PE=3 SV=1
Length = 258
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 2 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSD 61
R AE +LT +D S +++ S RT + PL T+G +S++ D D
Sbjct: 38 RTYDAEGADELTFLDISASFEGRATTMEIVS---RTAEEVFIPL---TVGGGVSSVADVD 91
Query: 62 LNVRRVA-LVAFNSAAHNKPSLVIDLLDSVLPQL 94
+R A VA N+AA N+P LV ++ D Q+
Sbjct: 92 RLLRAGADKVAVNTAAINRPELVAEIADRFGNQV 125
>sp|Q8FM94|CLPB_COREF Chaperone protein ClpB OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=clpB PE=3 SV=1
Length = 852
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 15/114 (13%)
Query: 10 GKLTLIDPSNLLPRLQESLKSNSALMRTTPQSI--DPLLRQTIGDFLSALKDS-----DL 62
G+L L+ + L ++ ++ ++AL R Q +P + T+G L LK+ +
Sbjct: 308 GELRLVGATTL-NEYRKYIEKDTALERRFQQVYVGEPSVEDTVG-ILRGLKERYEVHHGV 365
Query: 63 NVRRVALVAFNSAAHNK------PSLVIDLLDSVLPQLYAETAVKPQSIDPLLR 110
++ ALVA +H P IDL+D +L E PQ ID L R
Sbjct: 366 RIQDSALVAAAELSHRYITSRFLPDKAIDLVDEAASRLRMEIDSSPQEIDELER 419
>sp|P33892|GCN1_YEAST Translational activator GCN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GCN1 PE=1 SV=1
Length = 2672
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 44 PLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 94
P + Q I LS L D+D N+R AL A N + +DLL LP+L
Sbjct: 1721 PYINQIIQPILSGLADNDENIRDTALKAGKLIVKNYATKAVDLL---LPEL 1768
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 107 PLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157
P + Q I LS L D+D N+R AL A N + +DLL LP+L
Sbjct: 1721 PYINQIIQPILSGLADNDENIRDTALKAGKLIVKNYATKAVDLL---LPEL 1768
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,723,684
Number of Sequences: 539616
Number of extensions: 2264794
Number of successful extensions: 7890
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 7834
Number of HSP's gapped (non-prelim): 65
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)