Query psy18155
Match_columns 185
No_of_seqs 113 out of 290
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 23:59:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1824|consensus 100.0 3.3E-34 7.2E-39 271.2 10.9 171 1-175 948-1175(1233)
2 KOG2023|consensus 99.9 9.2E-28 2E-32 222.0 9.6 178 3-180 112-341 (885)
3 KOG1824|consensus 99.9 3.5E-24 7.6E-29 203.6 12.5 183 2-185 874-1081(1233)
4 PF08623 TIP120: TATA-binding 99.4 1.8E-14 3.9E-19 115.8 -0.6 93 81-174 1-135 (169)
5 KOG2171|consensus 98.5 2.4E-06 5.3E-11 84.2 13.1 137 3-157 102-252 (1075)
6 PF12717 Cnd1: non-SMC mitotic 98.1 2.9E-05 6.3E-10 62.3 9.5 87 45-157 22-110 (178)
7 PRK09687 putative lyase; Provi 97.9 0.00015 3.2E-09 62.5 10.4 130 2-138 40-186 (280)
8 KOG2023|consensus 97.7 0.00019 4E-09 68.4 9.7 121 37-157 374-522 (885)
9 PF12717 Cnd1: non-SMC mitotic 97.7 0.00023 5E-09 57.1 8.9 121 1-121 4-139 (178)
10 KOG2171|consensus 97.7 0.00066 1.4E-08 67.5 12.7 153 6-159 330-523 (1075)
11 PRK09687 putative lyase; Provi 97.6 0.00045 9.8E-09 59.6 10.1 128 1-138 70-219 (280)
12 PF12755 Vac14_Fab1_bd: Vacuol 97.5 0.00031 6.8E-09 51.6 6.3 66 42-107 21-86 (97)
13 PRK13800 putative oxidoreducta 97.2 0.0025 5.5E-08 62.9 10.9 70 1-73 637-709 (897)
14 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.0018 4E-08 47.5 6.9 74 64-159 2-75 (97)
15 PRK13800 putative oxidoreducta 97.0 0.0033 7.1E-08 62.1 9.0 123 1-138 730-865 (897)
16 cd00020 ARM Armadillo/beta-cat 97.0 0.007 1.5E-07 43.3 8.4 88 49-157 8-100 (120)
17 PF02985 HEAT: HEAT repeat; I 96.9 0.0016 3.6E-08 37.6 3.8 28 49-76 1-28 (31)
18 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0066 1.4E-07 39.0 5.9 53 62-136 1-53 (55)
19 PF12460 MMS19_C: RNAPII trans 96.7 0.022 4.7E-07 51.5 10.9 92 46-159 321-413 (415)
20 KOG0915|consensus 96.6 0.012 2.6E-07 60.4 9.8 139 18-157 997-1177(1702)
21 PF12348 CLASP_N: CLASP N term 96.6 0.016 3.4E-07 47.4 8.9 148 8-157 12-182 (228)
22 cd00020 ARM Armadillo/beta-cat 96.5 0.0075 1.6E-07 43.2 5.9 99 20-139 8-119 (120)
23 KOG0212|consensus 96.5 0.041 8.9E-07 52.0 11.6 139 18-157 124-296 (675)
24 PF01602 Adaptin_N: Adaptin N 96.4 0.044 9.6E-07 49.8 11.4 117 16-138 39-179 (526)
25 PF13646 HEAT_2: HEAT repeats; 96.3 0.019 4E-07 39.6 6.6 24 50-73 1-25 (88)
26 PF10508 Proteasom_PSMB: Prote 96.1 0.083 1.8E-06 49.1 11.5 149 6-157 63-248 (503)
27 PF12460 MMS19_C: RNAPII trans 96.1 0.022 4.8E-07 51.4 7.6 80 18-97 322-414 (415)
28 PF12348 CLASP_N: CLASP N term 96.1 0.057 1.2E-06 44.0 9.2 108 41-153 87-219 (228)
29 KOG0915|consensus 95.8 0.051 1.1E-06 56.1 9.0 101 41-163 991-1093(1702)
30 PF13646 HEAT_2: HEAT repeats; 95.7 0.046 9.9E-07 37.6 6.3 54 21-74 1-57 (88)
31 PF08167 RIX1: rRNA processing 95.7 0.12 2.6E-06 41.1 9.3 120 18-158 24-161 (165)
32 KOG0414|consensus 95.6 0.081 1.8E-06 53.4 9.8 46 112-158 1036-1081(1251)
33 KOG0166|consensus 95.6 0.13 2.8E-06 48.2 10.5 88 18-105 151-253 (514)
34 PTZ00429 beta-adaptin; Provisi 95.6 0.17 3.6E-06 49.5 11.6 94 49-146 69-175 (746)
35 TIGR02270 conserved hypothetic 95.4 0.088 1.9E-06 48.0 8.7 110 18-138 85-205 (410)
36 KOG0212|consensus 95.4 0.079 1.7E-06 50.1 8.3 116 45-162 81-260 (675)
37 PTZ00429 beta-adaptin; Provisi 95.3 0.24 5.2E-06 48.4 11.7 60 21-80 107-172 (746)
38 KOG2259|consensus 95.2 0.045 9.9E-07 52.5 6.3 114 50-163 283-425 (823)
39 PF01602 Adaptin_N: Adaptin N 95.1 0.15 3.2E-06 46.4 9.2 108 46-157 40-161 (526)
40 KOG2160|consensus 95.1 0.24 5.1E-06 44.2 10.1 81 50-151 126-207 (342)
41 KOG1242|consensus 94.9 0.85 1.9E-05 43.3 13.6 117 39-158 286-421 (569)
42 PF02985 HEAT: HEAT repeat; I 94.4 0.085 1.8E-06 30.3 3.9 28 113-140 2-29 (31)
43 PF04826 Arm_2: Armadillo-like 94.3 1.3 2.7E-05 37.9 12.4 131 18-151 11-173 (254)
44 PF13513 HEAT_EZ: HEAT-like re 93.9 0.16 3.4E-06 32.4 4.8 29 45-73 25-53 (55)
45 KOG1967|consensus 93.7 0.47 1E-05 47.2 9.4 123 19-160 867-1003(1030)
46 PF10508 Proteasom_PSMB: Prote 93.4 1.3 2.8E-05 41.3 11.6 98 48-145 77-194 (503)
47 KOG1058|consensus 93.4 3.1 6.7E-05 41.0 14.2 152 3-157 224-442 (948)
48 KOG1967|consensus 93.3 0.12 2.7E-06 51.1 4.8 67 15-81 905-986 (1030)
49 KOG1241|consensus 93.1 1.1 2.3E-05 44.0 10.7 143 19-162 319-508 (859)
50 KOG0166|consensus 93.1 0.99 2.2E-05 42.4 10.3 128 19-147 109-273 (514)
51 KOG1242|consensus 93.0 0.75 1.6E-05 43.6 9.3 156 2-157 113-300 (569)
52 COG5096 Vesicle coat complex, 92.9 0.66 1.4E-05 45.5 9.1 115 18-138 54-193 (757)
53 KOG2149|consensus 92.8 1.2 2.7E-05 40.4 10.2 107 50-156 60-186 (393)
54 TIGR02270 conserved hypothetic 92.7 0.9 2E-05 41.4 9.3 111 18-138 53-174 (410)
55 COG5064 SRP1 Karyopherin (impo 92.6 0.13 2.8E-06 46.4 3.6 150 8-157 229-419 (526)
56 PF10363 DUF2435: Protein of u 92.0 2.2 4.9E-05 30.8 8.9 75 52-149 7-81 (92)
57 PF08389 Xpo1: Exportin 1-like 91.4 0.87 1.9E-05 34.0 6.6 94 4-98 11-135 (148)
58 KOG1059|consensus 90.8 3.2 7E-05 40.7 11.0 136 18-157 143-345 (877)
59 KOG2025|consensus 90.0 1.7 3.7E-05 42.5 8.4 95 25-146 91-199 (892)
60 KOG0213|consensus 89.9 3.5 7.5E-05 40.8 10.5 101 1-101 492-606 (1172)
61 PF12830 Nipped-B_C: Sister ch 89.9 2.5 5.5E-05 34.1 8.4 77 47-149 7-83 (187)
62 PLN03200 cellulose synthase-in 89.6 3.8 8.3E-05 44.5 11.4 139 3-141 548-724 (2102)
63 COG1413 FOG: HEAT repeat [Ener 89.3 5.5 0.00012 34.2 10.5 71 2-75 60-133 (335)
64 KOG0413|consensus 89.3 2 4.4E-05 43.5 8.5 115 2-141 948-1074(1529)
65 COG1413 FOG: HEAT repeat [Ener 89.1 2.9 6.3E-05 36.0 8.7 124 2-138 91-240 (335)
66 KOG1991|consensus 89.0 6.1 0.00013 39.8 11.6 103 55-157 509-647 (1010)
67 COG5098 Chromosome condensatio 89.0 0.72 1.6E-05 45.1 5.1 111 19-140 892-1037(1128)
68 KOG1820|consensus 88.4 4.6 9.9E-05 40.1 10.3 88 46-139 334-442 (815)
69 PF10274 ParcG: Parkin co-regu 88.2 5.8 0.00013 32.5 9.3 90 46-157 36-129 (183)
70 COG5064 SRP1 Karyopherin (impo 88.2 2.9 6.2E-05 38.0 8.1 118 48-166 243-388 (526)
71 COG5096 Vesicle coat complex, 88.1 3.8 8.2E-05 40.3 9.5 75 20-94 93-174 (757)
72 PLN03200 cellulose synthase-in 88.0 4.9 0.00011 43.7 10.9 123 19-141 404-560 (2102)
73 PF00514 Arm: Armadillo/beta-c 86.2 1.6 3.4E-05 26.2 3.9 27 48-74 12-38 (41)
74 KOG2259|consensus 86.1 0.93 2E-05 43.9 4.0 103 52-157 377-492 (823)
75 KOG1243|consensus 85.0 2.7 5.8E-05 40.7 6.6 119 19-140 330-476 (690)
76 PF10521 DUF2454: Protein of u 84.9 10 0.00023 32.4 9.7 39 45-83 116-154 (282)
77 COG5215 KAP95 Karyopherin (imp 84.8 12 0.00027 36.1 10.7 143 19-163 321-509 (858)
78 KOG1061|consensus 84.1 9.8 0.00021 37.3 10.0 125 9-157 73-211 (734)
79 KOG1020|consensus 84.0 10 0.00022 40.0 10.4 132 46-180 814-963 (1692)
80 PF12719 Cnd3: Nuclear condens 83.7 22 0.00047 30.5 11.2 89 46-138 24-141 (298)
81 KOG1060|consensus 83.0 6 0.00013 39.3 8.0 141 16-163 68-232 (968)
82 COG5218 YCG1 Chromosome conden 83.0 9.1 0.0002 37.1 9.0 115 24-138 96-264 (885)
83 KOG2025|consensus 82.9 3.6 7.7E-05 40.4 6.4 107 19-137 126-256 (892)
84 KOG1248|consensus 82.5 13 0.00027 38.3 10.3 110 46-157 736-874 (1176)
85 KOG1240|consensus 82.1 15 0.00032 38.2 10.5 149 1-157 524-705 (1431)
86 PF11865 DUF3385: Domain of un 81.2 11 0.00024 29.7 7.9 105 2-108 28-147 (160)
87 KOG1240|consensus 81.2 6.2 0.00013 40.8 7.6 69 45-113 459-532 (1431)
88 KOG0946|consensus 80.7 5.8 0.00013 39.3 7.0 74 50-144 124-199 (970)
89 KOG1949|consensus 80.2 20 0.00043 35.5 10.3 116 22-140 177-331 (1005)
90 KOG1248|consensus 79.4 6.8 0.00015 40.2 7.2 63 46-108 825-888 (1176)
91 KOG0211|consensus 78.9 16 0.00035 36.1 9.5 63 9-72 546-620 (759)
92 KOG0211|consensus 78.0 6.4 0.00014 38.8 6.5 117 19-135 398-542 (759)
93 KOG1241|consensus 77.7 53 0.0012 32.7 12.4 140 19-158 364-548 (859)
94 KOG1059|consensus 77.6 11 0.00024 37.1 7.9 72 47-144 143-214 (877)
95 KOG1525|consensus 77.3 15 0.00032 38.4 9.0 118 19-138 259-403 (1266)
96 PF13251 DUF4042: Domain of un 77.2 3.5 7.7E-05 33.6 3.9 66 63-138 1-67 (182)
97 KOG1517|consensus 76.8 23 0.00049 36.5 9.9 67 3-79 599-673 (1387)
98 PF10363 DUF2435: Protein of u 76.2 20 0.00043 25.8 7.3 38 46-83 41-78 (92)
99 KOG2933|consensus 75.9 14 0.00029 33.0 7.4 71 37-107 118-188 (334)
100 KOG1062|consensus 75.0 12 0.00026 37.1 7.4 75 55-157 320-394 (866)
101 KOG1949|consensus 74.9 17 0.00037 35.9 8.3 118 38-157 163-307 (1005)
102 PF12719 Cnd3: Nuclear condens 74.6 20 0.00043 30.8 8.1 114 1-118 43-181 (298)
103 KOG4224|consensus 74.6 17 0.00038 33.4 7.8 54 19-72 208-275 (550)
104 smart00185 ARM Armadillo/beta- 74.2 6.3 0.00014 22.7 3.6 25 49-73 13-37 (41)
105 PF10274 ParcG: Parkin co-regu 73.9 9.9 0.00021 31.1 5.7 50 46-95 78-130 (183)
106 cd03561 VHS VHS domain family; 73.2 38 0.00082 25.6 9.7 82 6-99 2-90 (133)
107 KOG0414|consensus 72.9 8.4 0.00018 39.6 6.0 72 4-75 942-1025(1251)
108 PF12830 Nipped-B_C: Sister ch 72.3 15 0.00033 29.5 6.5 30 11-40 37-66 (187)
109 KOG2956|consensus 72.3 35 0.00076 32.1 9.4 110 46-158 327-454 (516)
110 cd00872 PI3Ka_I Phosphoinositi 72.0 5 0.00011 32.4 3.5 66 18-94 38-114 (171)
111 PF03130 HEAT_PBS: PBS lyase H 71.7 2.1 4.5E-05 23.7 0.9 25 2-29 2-26 (27)
112 PF08713 DNA_alkylation: DNA a 70.8 19 0.00042 28.7 6.8 77 49-153 121-197 (213)
113 cd00871 PI4Ka Phosphoinositide 69.3 16 0.00034 29.7 5.9 32 60-94 83-114 (175)
114 KOG1820|consensus 69.1 28 0.00062 34.7 8.6 107 55-161 302-423 (815)
115 PF00790 VHS: VHS domain; Int 68.3 51 0.0011 25.1 8.6 78 13-102 19-98 (140)
116 PF05804 KAP: Kinesin-associat 67.7 55 0.0012 32.2 10.2 32 113-144 622-653 (708)
117 PF12765 Cohesin_HEAT: HEAT re 67.4 8.3 0.00018 23.7 3.1 23 49-71 19-41 (42)
118 KOG2032|consensus 65.7 52 0.0011 31.1 9.1 57 45-101 255-311 (533)
119 PF04118 Dopey_N: Dopey, N-ter 65.4 56 0.0012 28.8 9.0 119 8-132 15-159 (307)
120 PF11707 Npa1: Ribosome 60S bi 65.4 95 0.0021 27.2 11.4 85 45-132 53-154 (330)
121 cd03568 VHS_STAM VHS domain fa 65.4 63 0.0014 25.1 9.6 76 13-100 14-91 (144)
122 KOG2973|consensus 64.4 78 0.0017 28.4 9.5 89 53-141 8-112 (353)
123 cd00870 PI3Ka_III Phosphoinosi 63.7 19 0.00041 28.8 5.3 35 60-101 90-124 (166)
124 KOG1222|consensus 63.2 48 0.0011 31.7 8.4 25 115-139 638-662 (791)
125 PF08623 TIP120: TATA-binding 61.5 24 0.00053 28.4 5.5 52 48-100 66-117 (169)
126 PF12333 Ipi1_N: Rix1 complex 60.4 39 0.00085 24.6 6.1 47 53-99 16-63 (102)
127 KOG1062|consensus 59.6 40 0.00088 33.6 7.5 84 47-157 141-224 (866)
128 cd06561 AlkD_like A new struct 58.8 81 0.0018 24.6 8.2 76 53-155 110-185 (197)
129 PF07539 DRIM: Down-regulated 58.7 65 0.0014 25.0 7.4 23 53-75 22-44 (141)
130 KOG4653|consensus 58.2 75 0.0016 32.1 9.1 104 47-154 767-890 (982)
131 smart00145 PI3Ka Phosphoinosit 58.1 16 0.00035 29.7 4.0 31 61-94 89-119 (184)
132 cd00869 PI3Ka_II Phosphoinosit 57.0 19 0.00041 29.0 4.2 32 60-94 83-114 (169)
133 PF09324 DUF1981: Domain of un 56.9 39 0.00084 23.8 5.4 51 50-100 19-70 (86)
134 KOG4413|consensus 56.4 84 0.0018 28.8 8.5 26 115-140 132-157 (524)
135 KOG1243|consensus 56.2 49 0.0011 32.4 7.5 95 45-141 327-438 (690)
136 PF11698 V-ATPase_H_C: V-ATPas 56.0 44 0.00095 25.5 5.8 24 115-138 90-113 (119)
137 KOG1943|consensus 55.8 74 0.0016 32.8 8.8 137 19-155 420-589 (1133)
138 COG5095 TAF6 Transcription ini 55.7 32 0.00069 31.0 5.6 78 49-157 198-282 (450)
139 PLN03076 ARF guanine nucleotid 54.8 1.8E+02 0.004 31.8 12.0 76 2-80 1200-1282(1780)
140 KOG1020|consensus 54.7 95 0.0021 33.3 9.5 116 19-138 816-958 (1692)
141 PF08167 RIX1: rRNA processing 54.3 1E+02 0.0023 24.1 9.7 55 46-100 23-78 (165)
142 KOG1991|consensus 53.9 2.1E+02 0.0045 29.4 11.4 130 5-157 396-552 (1010)
143 PF11701 UNC45-central: Myosin 53.2 62 0.0013 25.2 6.6 102 59-161 16-140 (157)
144 smart00567 EZ_HEAT E-Z type HE 52.3 16 0.00035 20.1 2.3 27 1-30 3-29 (30)
145 PF11698 V-ATPase_H_C: V-ATPas 51.8 22 0.00048 27.1 3.6 24 52-75 90-113 (119)
146 PF11919 DUF3437: Domain of un 50.1 37 0.00081 24.5 4.4 59 63-122 4-62 (90)
147 COG5231 VMA13 Vacuolar H+-ATPa 49.8 40 0.00086 30.6 5.3 58 19-76 356-427 (432)
148 COG5098 Chromosome condensatio 49.3 2.5E+02 0.0055 28.3 11.0 125 51-176 302-468 (1128)
149 COG5181 HSH155 U2 snRNP splice 48.4 1.9E+02 0.004 28.7 9.8 150 17-173 798-973 (975)
150 KOG4653|consensus 48.3 2.6E+02 0.0057 28.5 11.1 62 12-73 795-872 (982)
151 cd00864 PI3Ka Phosphoinositide 48.1 66 0.0014 25.2 5.9 52 16-75 36-98 (152)
152 smart00802 UME Domain in UVSB 47.2 60 0.0013 24.1 5.3 38 55-94 63-101 (107)
153 PF00613 PI3Ka: Phosphoinositi 46.7 26 0.00057 28.3 3.6 74 13-101 39-123 (184)
154 KOG1061|consensus 46.0 39 0.00084 33.3 5.1 96 46-145 47-155 (734)
155 PF05004 IFRD: Interferon-rela 45.5 2.1E+02 0.0045 25.0 11.2 120 16-135 83-252 (309)
156 KOG1048|consensus 45.4 1.4E+02 0.003 29.6 8.7 52 21-72 235-299 (717)
157 KOG4224|consensus 45.4 28 0.00061 32.1 3.8 63 16-78 248-323 (550)
158 KOG0213|consensus 45.0 2E+02 0.0043 29.1 9.6 134 18-151 994-1153(1172)
159 KOG1058|consensus 44.9 2.2E+02 0.0048 28.7 9.9 51 26-76 106-162 (948)
160 PF01347 Vitellogenin_N: Lipop 44.3 57 0.0012 30.6 5.9 86 45-138 487-587 (618)
161 COG5215 KAP95 Karyopherin (imp 43.7 3.3E+02 0.0072 26.8 10.9 97 3-99 578-690 (858)
162 PF14911 MMS22L_C: S-phase gen 43.3 1.1E+02 0.0023 27.9 7.2 38 60-97 200-241 (373)
163 smart00638 LPD_N Lipoprotein N 43.2 2.8E+02 0.0061 25.8 12.5 101 50-150 395-519 (574)
164 KOG2137|consensus 42.8 1.4E+02 0.003 29.5 8.2 31 114-144 470-500 (700)
165 COG5181 HSH155 U2 snRNP splice 42.7 57 0.0012 32.1 5.6 101 1-101 297-411 (975)
166 PF04826 Arm_2: Armadillo-like 42.2 1.9E+02 0.0041 24.6 8.2 84 50-157 14-102 (254)
167 COG5218 YCG1 Chromosome conden 42.0 2.1E+02 0.0046 28.1 9.2 102 45-146 88-205 (885)
168 KOG2062|consensus 41.3 35 0.00075 34.0 3.9 22 115-136 558-580 (929)
169 KOG2160|consensus 41.1 1.6E+02 0.0035 26.5 7.8 119 22-140 127-282 (342)
170 PF05918 API5: Apoptosis inhib 40.9 43 0.00093 32.0 4.5 84 54-137 65-159 (556)
171 smart00638 LPD_N Lipoprotein N 40.8 66 0.0014 30.0 5.7 17 122-138 527-543 (574)
172 COG5240 SEC21 Vesicle coat com 40.2 1.5E+02 0.0034 29.0 7.9 22 60-81 499-520 (898)
173 PF01347 Vitellogenin_N: Lipop 39.9 28 0.00061 32.6 3.1 99 52-150 435-563 (618)
174 cd08050 TAF6 TATA Binding Prot 39.1 1.2E+02 0.0027 26.8 6.9 28 46-73 176-203 (343)
175 PF13251 DUF4042: Domain of un 38.4 2.2E+02 0.0047 23.1 10.2 24 55-78 47-70 (182)
176 KOG1078|consensus 37.6 60 0.0013 32.4 4.9 25 115-139 507-531 (865)
177 KOG3961|consensus 37.6 98 0.0021 26.5 5.6 49 113-161 157-210 (262)
178 KOG0905|consensus 37.2 82 0.0018 33.2 5.9 53 58-113 900-952 (1639)
179 KOG1060|consensus 36.0 3.6E+02 0.0078 27.4 9.9 75 46-146 390-464 (968)
180 PF08569 Mo25: Mo25-like; Int 35.9 3.2E+02 0.0068 24.3 9.4 106 46-151 74-204 (335)
181 PF05004 IFRD: Interferon-rela 34.9 3.1E+02 0.0067 23.9 10.0 29 45-73 225-253 (309)
182 KOG2274|consensus 34.7 3.3E+02 0.0072 27.9 9.5 151 2-157 107-276 (1005)
183 PF11707 Npa1: Ribosome 60S bi 34.4 2.4E+02 0.0052 24.6 7.9 48 104-151 49-97 (330)
184 KOG2062|consensus 33.9 64 0.0014 32.2 4.5 100 2-105 572-681 (929)
185 PF10521 DUF2454: Protein of u 33.8 1.7E+02 0.0037 25.0 6.8 137 15-159 115-272 (282)
186 KOG1992|consensus 33.6 3.6E+02 0.0078 27.4 9.5 27 14-40 121-151 (960)
187 PF14500 MMS19_N: Dos2-interac 33.3 1.5E+02 0.0033 25.2 6.3 26 55-80 6-31 (262)
188 PF08713 DNA_alkylation: DNA a 32.3 1.2E+02 0.0026 24.0 5.3 83 6-89 108-196 (213)
189 KOG2549|consensus 32.2 2.5E+02 0.0054 27.0 7.9 81 46-157 205-293 (576)
190 PF14664 RICTOR_N: Rapamycin-i 30.6 4E+02 0.0087 23.9 9.0 32 115-146 112-143 (371)
191 KOG1943|consensus 30.4 4.2E+02 0.0092 27.6 9.6 112 45-157 338-475 (1133)
192 KOG2137|consensus 30.2 3.3E+02 0.0073 26.9 8.6 31 46-76 387-417 (700)
193 PF13001 Ecm29: Proteasome sta 30.1 4.6E+02 0.0099 24.4 9.8 62 59-121 385-446 (501)
194 KOG1077|consensus 30.0 3.5E+02 0.0075 27.2 8.6 32 108-139 365-397 (938)
195 KOG1525|consensus 29.3 4.9E+02 0.011 27.6 10.1 32 114-145 303-334 (1266)
196 PF04388 Hamartin: Hamartin pr 29.3 2E+02 0.0042 28.1 7.0 92 5-98 56-161 (668)
197 PF06685 DUF1186: Protein of u 29.1 2.5E+02 0.0055 24.0 7.0 83 16-99 70-163 (249)
198 PF05804 KAP: Kinesin-associat 29.1 4.4E+02 0.0095 26.1 9.3 29 111-139 490-519 (708)
199 PF04388 Hamartin: Hamartin pr 27.8 5.8E+02 0.013 24.9 10.5 76 61-157 81-157 (668)
200 PF12612 TFCD_C: Tubulin foldi 27.6 3.2E+02 0.0069 21.8 7.9 94 1-94 23-136 (193)
201 smart00288 VHS Domain present 27.2 2.7E+02 0.0059 20.9 10.4 79 12-102 13-93 (133)
202 KOG0946|consensus 26.5 7E+02 0.015 25.4 10.2 111 19-150 22-161 (970)
203 PF05918 API5: Apoptosis inhib 26.2 3.4E+02 0.0074 26.0 7.9 48 54-106 29-76 (556)
204 KOG0413|consensus 26.1 1.7E+02 0.0036 30.5 5.9 94 2-98 986-1092(1529)
205 COG5657 CSE1 CAS/CSE protein i 25.1 7.6E+02 0.017 25.3 11.7 27 5-31 105-135 (947)
206 PF14675 FANCI_S1: FANCI solen 24.5 4.2E+02 0.0092 22.2 8.5 84 6-98 97-183 (223)
207 PF14663 RasGEF_N_2: Rapamycin 24.4 1.8E+02 0.0039 21.5 4.7 30 48-77 8-37 (115)
208 PF13001 Ecm29: Proteasome sta 24.1 5.9E+02 0.013 23.7 9.8 100 38-143 13-115 (501)
209 PF03224 V-ATPase_H_N: V-ATPas 23.7 4.6E+02 0.01 22.4 7.8 76 52-143 62-137 (312)
210 PF07539 DRIM: Down-regulated 23.7 1.7E+02 0.0037 22.7 4.5 50 115-168 21-70 (141)
211 PF13938 DUF4213: Domain of un 23.7 1.2E+02 0.0026 21.2 3.4 27 50-76 60-86 (87)
212 KOG1992|consensus 23.5 8.1E+02 0.017 25.1 10.3 67 46-112 496-571 (960)
213 PF14500 MMS19_N: Dos2-interac 23.4 2.7E+02 0.0058 23.7 6.1 52 46-97 206-258 (262)
214 PF14838 INTS5_C: Integrator c 23.0 6.9E+02 0.015 24.8 9.4 133 4-156 258-405 (696)
215 KOG3723|consensus 21.9 1.2E+02 0.0027 29.5 4.0 62 71-132 185-258 (851)
216 PF08064 UME: UME (NUC010) dom 21.4 3.3E+02 0.0071 19.8 6.6 19 60-78 27-45 (107)
217 KOG1517|consensus 20.8 3.2E+02 0.0068 28.8 6.7 123 19-141 512-672 (1387)
218 cd08050 TAF6 TATA Binding Prot 20.7 5.4E+02 0.012 22.7 7.7 81 45-139 207-296 (343)
219 KOG1993|consensus 20.6 1.8E+02 0.0039 29.4 4.9 48 4-76 104-151 (978)
220 PF11935 DUF3453: Domain of un 20.1 4.2E+02 0.009 22.1 6.6 66 56-136 1-68 (239)
No 1
>KOG1824|consensus
Probab=100.00 E-value=3.3e-34 Score=271.25 Aligned_cols=171 Identities=49% Similarity=0.764 Sum_probs=162.3
Q ss_pred CchhHHHHHhhcccCCccchHHHHHHhhcCCCcccc------------cchhhhhHHHHhhHHHHHHhccCCChHHHHHH
Q psy18155 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMR------------TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVA 68 (185)
Q Consensus 1 ~r~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r------------~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~a 68 (185)
+|||||||||++++.+|..++|+|+..+.|+++..| |.+.++|.++.+.|.+|+.+++|||++|||+|
T Consensus 948 tR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~Vrrva 1027 (1233)
T KOG1824|consen 948 TRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVA 1027 (1233)
T ss_pred hHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 699999999999999999999999999999998888 88899999999999999999999999999999
Q ss_pred HHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHH----------------
Q psy18155 69 LVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVAL---------------- 132 (185)
Q Consensus 69 l~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~---------------- 132 (185)
|.++|+|+||||+++++.++++||.||.+|++++|+||++ .||||.|.+ |+++++|++|+
T Consensus 1028 Lvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreV---eMGPFKH~V-DdgLd~RKaaFEcmytLLdscld~~di 1103 (1233)
T KOG1824|consen 1028 LVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREV---EMGPFKHTV-DDGLDLRKAAFECMYTLLDSCLDRLDI 1103 (1233)
T ss_pred HHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhh---cccCccccc-cchHHHHHHHHHHHHHHHHhhhhhccH
Confidence 9999999999999999999999999999999999999999 999999999 88999999986
Q ss_pred ----------------------HHHHHHhhcChhhHHHhHhhHhhhh-------hhhhhhcchhhhhhccCC
Q psy18155 133 ----------------------VAFNSAAHNKPSLVIDLLDSVLPQL-------YAETAVKKTLIREVEMGP 175 (185)
Q Consensus 133 ----------------------~~L~~~a~~~p~lv~~~L~~llp~L-------y~et~vk~el~R~vdmgP 175 (185)
+|+...|...|..|.+.+|+++++| .++..||||.+|..||+.
T Consensus 1104 t~Fl~~~~~GL~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkR 1175 (1233)
T KOG1824|consen 1104 TEFLNHVEDGLEDHYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKR 1175 (1233)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHH
Confidence 6777888999999999999999999 677889999999999864
No 2
>KOG2023|consensus
Probab=99.95 E-value=9.2e-28 Score=221.97 Aligned_cols=178 Identities=22% Similarity=0.226 Sum_probs=158.4
Q ss_pred hhHHHHHhhcccCCccchHHHHHHhhcCCCcccc------------cchhhhhH-H----HHhhHHHHHHhccCCChHHH
Q psy18155 3 NVVAECLGKLTLIDPSNLLPRLQESLKSNSALMR------------TTPQSIDP-L----LRQTIGDFLSALKDSDLNVR 65 (185)
Q Consensus 3 ~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r------------~~~~~~d~-~----L~~~i~~fl~~l~d~d~~vR 65 (185)
++|+++.++.|+.+||++||+|.++|+|++-... |++..+|. + |+.|||+|+++++|+++++|
T Consensus 112 ivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiR 191 (885)
T KOG2023|consen 112 IVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIR 191 (885)
T ss_pred heeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHH
Confidence 5789999999999999999999999999875555 88888887 2 89999999999999999999
Q ss_pred HHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch---------------HHHhhHH----HHHHhccCCCHH
Q psy18155 66 RVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP---------------LLRQTIG----DFLSALKDSDLN 126 (185)
Q Consensus 66 ~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~---------------~L~~~m~----~~l~~l~D~d~~ 126 (185)
..|+.|+|.++..+++.+..|+|+||..||+.++|.++.||+ +|.|||+ ||++.++|.|++
T Consensus 192 s~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~ 271 (885)
T KOG2023|consen 192 SHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDEN 271 (885)
T ss_pred HHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchh
Confidence 999999999999999999999999999999999999999987 5677765 999999999999
Q ss_pred HHHHHHHHHHHHhh--cChhhHHHhHhhHhhhh-----hhhhhh---------cchhhhhhccCCceeec
Q psy18155 127 VRRVALVAFNSAAH--NKPSLVIDLLDSVLPQL-----YAETAV---------KKTLIREVEMGPFKHTV 180 (185)
Q Consensus 127 Vr~~A~~~L~~~a~--~~p~lv~~~L~~llp~L-----y~et~v---------k~el~R~vdmgPfkh~v 180 (185)
|+.+||....+.|. -.++.+.|||++++|.| |+|+++ ....+|+.|++|.+||-
T Consensus 272 VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhks 341 (885)
T KOG2023|consen 272 VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKS 341 (885)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhc
Confidence 99999965555544 45667899999999999 888776 33468999999999983
No 3
>KOG1824|consensus
Probab=99.91 E-value=3.5e-24 Score=203.59 Aligned_cols=183 Identities=43% Similarity=0.639 Sum_probs=136.9
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhhcCCCcccc---------cchhhhhHHHHhhHHHHH----HhccCCChHHHHHH
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMR---------TTPQSIDPLLRQTIGDFL----SALKDSDLNVRRVA 68 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r---------~~~~~~d~~L~~~i~~fl----~~l~d~d~~vR~~a 68 (185)
+...|--||.++..+-+++||-+.+...++.-.-- =...+.| .+.+-+++.. ..........|.+-
T Consensus 874 ksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd-~~~~~v~~IW~lL~k~cE~~eegtR~vv 952 (1233)
T KOG1824|consen 874 KSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVD-GLKPYVEKIWALLFKHCECAEEGTRNVV 952 (1233)
T ss_pred HHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccc-hhhhhHHHHHHHHHHhcccchhhhHHHH
Confidence 45667789999999999999999998875421100 0000111 2333344332 33344455567777
Q ss_pred HHHHHHhhhcCchhhHHhHHhHHH--HHHH----------HhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHH
Q psy18155 69 LVAFNSAAHNKPSLVIDLLDSVLP--QLYA----------ETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFN 136 (185)
Q Consensus 69 l~~ln~~~~~kp~ll~~~l~~~Lp--~L~~----------~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~ 136 (185)
-.|+.-.+-+.|..+.+.|...+- .=+. ..++.++-++..|.+++|.|+..++|+|++|||+|+.+||
T Consensus 953 AECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~n 1032 (1233)
T KOG1824|consen 953 AECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLN 1032 (1233)
T ss_pred HHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 777777777777666555554431 1111 1245566667789999999999999999999999999999
Q ss_pred HHhhcChhhHHHhHhhHhhhhhhhhhhcchhhhhhccCCceeecCCCCC
Q psy18155 137 SAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTVDDGLD 185 (185)
Q Consensus 137 ~~a~~~p~lv~~~L~~llp~Ly~et~vk~el~R~vdmgPfkh~vDdGle 185 (185)
+++||||.+|++.|++++|.||+||.||.|++|+|+||||||+||||||
T Consensus 1033 SaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd 1081 (1233)
T KOG1824|consen 1033 SAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLD 1081 (1233)
T ss_pred HHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHH
Confidence 9999999999999999999999999999999999999999999999996
No 4
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=99.42 E-value=1.8e-14 Score=115.77 Aligned_cols=93 Identities=32% Similarity=0.497 Sum_probs=67.6
Q ss_pred hhhHHhHHhHHHHHHHHhhcCCCCCchH--------------------------H---------HhhHHHHHHhccCCCH
Q psy18155 81 SLVIDLLDSVLPQLYAETAVKPQSIDPL--------------------------L---------RQTIGDFLSALKDSDL 125 (185)
Q Consensus 81 ~ll~~~l~~~Lp~L~~~t~~~~~~vr~~--------------------------L---------~~~m~~~l~~l~D~d~ 125 (185)
++++++|+.+||.||++|..++++||++ | ...+.....+++| +.
T Consensus 1 ~li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 1 DLIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp GGTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--H
T ss_pred CchHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cH
Confidence 4788999999999999999999999873 1 1112244455655 66
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHhHhhHhhhh-------hhhhhhcchhhhhhccC
Q psy18155 126 NVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL-------YAETAVKKTLIREVEMG 174 (185)
Q Consensus 126 ~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~L-------y~et~vk~el~R~vdmg 174 (185)
+||..|+.++...+...|..+.++|+.+++++ .+++++|||++|..|+.
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~ 135 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELI 135 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHH
Confidence 66666668888888999999999999999998 68889999999988764
No 5
>KOG2171|consensus
Probab=98.46 E-value=2.4e-06 Score=84.18 Aligned_cols=137 Identities=22% Similarity=0.218 Sum_probs=103.8
Q ss_pred hhHHHHHhhcccCCccchHHHHHHhhcCCCcccccchhh--------hhH----HHHhhHHHHHHhccCCChHHHHHHHH
Q psy18155 3 NVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQS--------IDP----LLRQTIGDFLSALKDSDLNVRRVALV 70 (185)
Q Consensus 3 ~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~--------~d~----~L~~~i~~fl~~l~d~d~~vR~~al~ 70 (185)
.+||||-.......||++++-|.+.++|+++..|-++-- +.. +++-+.+=|.+.|.|++..||-.|+.
T Consensus 102 dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~r 181 (1075)
T KOG2171|consen 102 DVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVR 181 (1075)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHH
Confidence 589999999999999999999999999999999943332 222 34455666778999998889999999
Q ss_pred HHHHhhhcCc--hhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHH
Q psy18155 71 AFNSAAHNKP--SLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVID 148 (185)
Q Consensus 71 ~ln~~~~~kp--~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~ 148 (185)
++++++.--+ .....+...++|.++.-. -..++++|.+....++..|++.+...|.++++
T Consensus 182 A~~a~~~~~~~~~~~~~~~~~llP~~l~vl------------------~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~ 243 (1075)
T KOG2171|consen 182 ALGAFAEYLENNKSEVDKFRDLLPSLLNVL------------------QEVIQDGDDDAAKSALEALIELLESEPKLLRP 243 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHhHHHHHHh------------------HhhhhccchHHHHHHHHHHHHHHhhchHHHHH
Confidence 9998864322 234444444444443222 13455678889999999999999999999999
Q ss_pred hHhhHhhhh
Q psy18155 149 LLDSVLPQL 157 (185)
Q Consensus 149 ~L~~llp~L 157 (185)
++..++..-
T Consensus 244 ~l~~ii~~~ 252 (1075)
T KOG2171|consen 244 HLSQIIQFS 252 (1075)
T ss_pred HHHHHHHHH
Confidence 999888765
No 6
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.09 E-value=2.9e-05 Score=62.30 Aligned_cols=87 Identities=20% Similarity=0.372 Sum_probs=68.7
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhh-HHHHHHhccCC
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQT-IGDFLSALKDS 123 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~-m~~~l~~l~D~ 123 (185)
.+++.+|.+...++|+++.||+.|+.+++..+.+.. ++ ..+. +..|+..+.|+
T Consensus 22 ~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------------------------ik--~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 22 LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------------------------IK--VKGQLFSRILKLLVDE 75 (178)
T ss_pred HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------------------------ee--ehhhhhHHHHHHHcCC
Confidence 456677777799999999999999999885432111 11 2233 47889999999
Q ss_pred CHHHHHHHHHHHHHHhhc-ChhhHHHhHhhHhhhh
Q psy18155 124 DLNVRRVALVAFNSAAHN-KPSLVIDLLDSVLPQL 157 (185)
Q Consensus 124 d~~Vr~~A~~~L~~~a~~-~p~lv~~~L~~llp~L 157 (185)
|.+||..|...|.+.+.. .|+.+..++++++-.+
T Consensus 76 ~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999999999998777 7998989999888877
No 7
>PRK09687 putative lyase; Provisional
Probab=97.86 E-value=0.00015 Score=62.55 Aligned_cols=130 Identities=20% Similarity=0.141 Sum_probs=72.9
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhhcCCCcccccchhhhhHHHH-------hhHHHHHHh-ccCCChHHHHHHHHHHH
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLR-------QTIGDFLSA-LKDSDLNVRRVALVAFN 73 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~-------~~i~~fl~~-l~d~d~~vR~~al~~ln 73 (185)
|.-++..||.++ -+++++.+.++++++++.+|..+...=..++ ..++.+..+ .+|+|..||+.|+.++.
T Consensus 40 R~~A~~aL~~~~---~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG 116 (280)
T PRK09687 40 RISSIRVLQLRG---GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATG 116 (280)
T ss_pred HHHHHHHHHhcC---cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 334455555554 4678888888888888888855442211121 234444433 68888888888877765
Q ss_pred HhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhh---------HHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 74 SAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQT---------IGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 74 ~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~---------m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
..-...+ .....+++.+-....+++..||..-.-- +..++..++|++.+||..|..+|...
T Consensus 117 ~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 117 HRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred ccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 4321111 0122244444445555555665522111 23556666677777777777777665
No 8
>KOG2023|consensus
Probab=97.74 E-value=0.00019 Score=68.38 Aligned_cols=121 Identities=20% Similarity=0.270 Sum_probs=99.6
Q ss_pred cchhhhhHH--------HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch-
Q psy18155 37 TTPQSIDPL--------LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP- 107 (185)
Q Consensus 37 ~~~~~~d~~--------L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~- 107 (185)
.++..+|.. |..++|-+=+.+.+++=+||.+++.++.+.|.+-=+.+.+||+.+.|.|.....|+..+||+
T Consensus 374 CSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsI 453 (885)
T KOG2023|consen 374 CSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSI 453 (885)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeee
Confidence 455556652 33333333388889999999999999999999999999999999999999999999999986
Q ss_pred -------------------HHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhh
Q psy18155 108 -------------------LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 108 -------------------~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~L 157 (185)
.+.|-|..++..+=|.+-.|.-+||.++...-...-.-+.|+|..++-.|
T Consensus 454 TCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l 522 (885)
T KOG2023|consen 454 TCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQL 522 (885)
T ss_pred eeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 55666777777777999999999999999987777666778999888877
No 9
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.73 E-value=0.00023 Score=57.08 Aligned_cols=121 Identities=19% Similarity=0.276 Sum_probs=87.5
Q ss_pred CchhHHHHHhhcccCCcc---chHHHHHHhhcCCCcccccchhhhhH-H-------HHhh-HHHHHHhccCCChHHHHHH
Q psy18155 1 TRNVVAECLGKLTLIDPS---NLLPRLQESLKSNSALMRTTPQSIDP-L-------LRQT-IGDFLSALKDSDLNVRRVA 68 (185)
Q Consensus 1 ~r~vvae~lg~l~~~~~~---~~l~~L~~~l~~~~~~~r~~~~~~d~-~-------L~~~-i~~fl~~l~d~d~~vR~~a 68 (185)
+|+.+..++|-++..-+. .++|.+..+|.++++.+|.++...=. . .+.. +..|+.++.|+|..||..|
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A 83 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLA 83 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHH
Confidence 489999999999998776 68899999999999999955442211 1 2333 4889999999999999999
Q ss_pred HHHHHHhhhc-CchhhHHhHHhHHHHHHHHhhcCC--CCCchHHHhhHHHHHHhcc
Q psy18155 69 LVAFNSAAHN-KPSLVIDLLDSVLPQLYAETAVKP--QSIDPLLRQTIGDFLSALK 121 (185)
Q Consensus 69 l~~ln~~~~~-kp~ll~~~l~~~Lp~L~~~t~~~~--~~vr~~L~~~m~~~l~~l~ 121 (185)
..+|...... .|+.+..++.+++-.|=...+... ..-++.-...+.+++..+.
T Consensus 84 ~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 84 RSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 9999988877 799998888887776644332210 0111122224667777774
No 10
>KOG2171|consensus
Probab=97.67 E-value=0.00066 Score=67.47 Aligned_cols=153 Identities=23% Similarity=0.245 Sum_probs=103.0
Q ss_pred HHHHhhccc-CCc----cchHHHHHHhhcCCCcccc------------cchhhhhHHHHhhHHHHHHhccCCChHHHHHH
Q psy18155 6 AECLGKLTL-IDP----SNLLPRLQESLKSNSALMR------------TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVA 68 (185)
Q Consensus 6 ae~lg~l~~-~~~----~~~l~~L~~~l~~~~~~~r------------~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~a 68 (185)
-.++-|+.. +.+ |-+++.+.++++|++..-| .+...+-..|..+++-.+..++||.+.||-+|
T Consensus 330 ~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA 409 (1075)
T KOG2171|consen 330 EQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAA 409 (1075)
T ss_pred HHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 345556555 233 3445566667778877777 55555555688888888999999999999999
Q ss_pred HHHHHHhhhcCchhhHHhHHhHHH-HHHHHhhcCCCCCc------------------hHHHhh----HHHHH-HhccCCC
Q psy18155 69 LVAFNSAAHNKPSLVIDLLDSVLP-QLYAETAVKPQSID------------------PLLRQT----IGDFL-SALKDSD 124 (185)
Q Consensus 69 l~~ln~~~~~kp~ll~~~l~~~Lp-~L~~~t~~~~~~vr------------------~~L~~~----m~~~l-~~l~D~d 124 (185)
+.++..+...=+.-+..+--+.+| +|-... +..+.+| .++.|+ |.+.+ ...+.+-
T Consensus 410 ~naigQ~stdl~p~iqk~~~e~l~~aL~~~l-d~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~ 488 (1075)
T KOG2171|consen 410 LNAIGQMSTDLQPEIQKKHHERLPPALIALL-DSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSK 488 (1075)
T ss_pred HHHHHhhhhhhcHHHHHHHHHhccHHHHHHh-cccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999988765544445544444444 443333 3333322 144444 44333 3444566
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhhh
Q psy18155 125 LNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYA 159 (185)
Q Consensus 125 ~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly~ 159 (185)
..|+-.+..++.+.|...-....+|.++++|.|..
T Consensus 489 ~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~ 523 (1075)
T KOG2171|consen 489 PYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKN 523 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 77888888999999988888899999999999943
No 11
>PRK09687 putative lyase; Provisional
Probab=97.65 E-value=0.00045 Score=59.56 Aligned_cols=128 Identities=17% Similarity=0.228 Sum_probs=87.0
Q ss_pred CchhHHHHHhhcccCC--ccchHHHHHHh-hcCCCcccccchhhhhHHH--------HhhHHHHHHhccCCChHHHHHHH
Q psy18155 1 TRNVVAECLGKLTLID--PSNLLPRLQES-LKSNSALMRTTPQSIDPLL--------RQTIGDFLSALKDSDLNVRRVAL 69 (185)
Q Consensus 1 ~r~vvae~lg~l~~~~--~~~~l~~L~~~-l~~~~~~~r~~~~~~d~~L--------~~~i~~fl~~l~d~d~~vR~~al 69 (185)
+|...+..||+++... -++.+|.|.++ ++++++.+|.++...=..+ ...+..+..++.|++..||+.|+
T Consensus 70 vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~ 149 (280)
T PRK09687 70 ERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVA 149 (280)
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHH
Confidence 3778889999998754 25789999988 6788899995444211111 12245566888899999999998
Q ss_pred HHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHH-----------HHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 70 VAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIG-----------DFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 70 ~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~-----------~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
.++... +. ...++.|.....+++..||..-..-+| .++..++|.+.+||+.|...|...
T Consensus 150 ~aLg~~---~~-------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 150 FALSVI---ND-------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHhcc---CC-------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 877422 11 235566666667777777763222232 467788899999999999888764
No 12
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.52 E-value=0.00031 Score=51.60 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=54.8
Q ss_pred hhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch
Q psy18155 42 IDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP 107 (185)
Q Consensus 42 ~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~ 107 (185)
+..+++.++|+.|..+.|+|..||-.|..++...+..-...+.++++++...|++...|.++.|+.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~ 86 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRS 86 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHH
Confidence 555899999999999999999999999999876666666667778888888888888777666653
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.25 E-value=0.0025 Score=62.90 Aligned_cols=70 Identities=23% Similarity=0.301 Sum_probs=40.6
Q ss_pred CchhHHHHHhhcccCCccchHHHHHHhhcCCCcccccchh-hhhHHHH--hhHHHHHHhccCCChHHHHHHHHHHH
Q psy18155 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQ-SIDPLLR--QTIGDFLSALKDSDLNVRRVALVAFN 73 (185)
Q Consensus 1 ~r~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~-~~d~~L~--~~i~~fl~~l~d~d~~vR~~al~~ln 73 (185)
+|...++.||+.+ .++.+|.|.+.++++++.+|..+. .+-.+.. .-.+.++.+++++|+.||..|+.++.
T Consensus 637 VR~~Av~~L~~~~---~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~ 709 (897)
T PRK13800 637 VRRTAVAVLTETT---PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLR 709 (897)
T ss_pred HHHHHHHHHhhhc---chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3666677777765 356778888888777777774332 1111100 11233446666677777777665554
No 14
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.17 E-value=0.0018 Score=47.52 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcCh
Q psy18155 64 VRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKP 143 (185)
Q Consensus 64 vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p 143 (185)
-|+.+|.++.+++-.-+.-+. ..+...+.+++.+++|+|..||-.||.+|...+....
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~----------------------~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~ 59 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDIS----------------------KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR 59 (97)
T ss_pred chhHHHHHHHHHHHHchHhHH----------------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 478888888877544443333 3444456677888889999999999999999887777
Q ss_pred hhHHHhHhhHhhhhhh
Q psy18155 144 SLVIDLLDSVLPQLYA 159 (185)
Q Consensus 144 ~lv~~~L~~llp~Ly~ 159 (185)
..+.++++++.+.|.+
T Consensus 60 ~~~l~~f~~IF~~L~k 75 (97)
T PF12755_consen 60 GEILPYFNEIFDALCK 75 (97)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788999999999844
No 15
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.00 E-value=0.0033 Score=62.11 Aligned_cols=123 Identities=17% Similarity=0.157 Sum_probs=80.1
Q ss_pred CchhHHHHHhhcccCCccchHHHHHHhhcCCCcccccchhh-hhHHH--H-hhHHHHHHhccCCChHHHHHHHHHHHHhh
Q psy18155 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQS-IDPLL--R-QTIGDFLSALKDSDLNVRRVALVAFNSAA 76 (185)
Q Consensus 1 ~r~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~-~d~~L--~-~~i~~fl~~l~d~d~~vR~~al~~ln~~~ 76 (185)
+|..++..||+++- + +.|...+.++++.+|..+.. +-..- . .-++.++.+++|+|+.||..|+.+|...-
T Consensus 730 VR~~Av~aL~~~~~--~----~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 730 VRIEAVRALVSVDD--V----ESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred HHHHHHHHHhcccC--c----HHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 36677778887642 2 34667888999999944331 11110 0 12466778899999999999988886442
Q ss_pred hcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHh---------hHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 77 HNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQ---------TIGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 77 ~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~---------~m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
. +. ...+.|.+...+++..||.--.. .+..++..++|++..||+.|..+|...
T Consensus 804 ~--~~-------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 804 C--PP-------DDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred C--cc-------hhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 1 11 11233444566667777762211 234677899999999999999999885
No 16
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.97 E-value=0.007 Score=43.33 Aligned_cols=88 Identities=20% Similarity=0.233 Sum_probs=56.3
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHH
Q psy18155 49 TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVR 128 (185)
Q Consensus 49 ~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr 128 (185)
.++.++..+++++..+|..|+.++....-+.|......++. ..+..++..++|++..|+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~---------------------~~i~~l~~~l~~~~~~v~ 66 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA---------------------GGLPALVQLLKSEDEEVV 66 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC---------------------CChHHHHHHHhCCCHHHH
Confidence 57888899999999999999999987654433222222110 134455566667778888
Q ss_pred HHHHHHHHHHhhcChhhH---H--HhHhhHhhhh
Q psy18155 129 RVALVAFNSAAHNKPSLV---I--DLLDSVLPQL 157 (185)
Q Consensus 129 ~~A~~~L~~~a~~~p~lv---~--~~L~~llp~L 157 (185)
..|+.+|...++..+... . +.++.++..+
T Consensus 67 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l 100 (120)
T cd00020 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL 100 (120)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHH
Confidence 888888877776654321 1 2345555555
No 17
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.92 E-value=0.0016 Score=37.64 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.0
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHhh
Q psy18155 49 TIGDFLSALKDSDLNVRRVALVAFNSAA 76 (185)
Q Consensus 49 ~i~~fl~~l~d~d~~vR~~al~~ln~~~ 76 (185)
++|.|+++++|++.+||..|..|+..++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4788999999999999999999998654
No 18
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.71 E-value=0.0066 Score=39.03 Aligned_cols=53 Identities=36% Similarity=0.411 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHH
Q psy18155 62 LNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFN 136 (185)
Q Consensus 62 ~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~ 136 (185)
+.||+.|+.++...+...+..+.++++.++|.|... ++|++.+||..|+.+|.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~----------------------L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPL----------------------LQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHH----------------------TTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHH----------------------HcCCCHHHHHHHHHHHh
Confidence 368999999998888888888888888888877544 44666688888887765
No 19
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.66 E-value=0.022 Score=51.48 Aligned_cols=92 Identities=23% Similarity=0.386 Sum_probs=76.7
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCch-hhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCC
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS-LVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSD 124 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~-ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d 124 (185)
-..++|++++..+..+..+|..-+.++...+.+-|. .+..++++++|.|.+-. .=+|
T Consensus 321 F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL----------------------~~~~ 378 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSL----------------------SLPD 378 (415)
T ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh----------------------CCCC
Confidence 567899999999988888999889999888888886 55788888888875443 2356
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhhh
Q psy18155 125 LNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYA 159 (185)
Q Consensus 125 ~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly~ 159 (185)
.+|+..++.+|.......|.++.+|++.++|.|.+
T Consensus 379 ~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 379 ADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999998854
No 20
>KOG0915|consensus
Probab=96.64 E-value=0.012 Score=60.41 Aligned_cols=139 Identities=18% Similarity=0.269 Sum_probs=113.8
Q ss_pred cchHHHHHHhhcCCCcccc------------cchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCch-hhH
Q psy18155 18 SNLLPRLQESLKSNSALMR------------TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS-LVI 84 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~~~r------------~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~-ll~ 84 (185)
+.++|+|-+.==+|+..+| |.-...|+|++-++-++|-.+.+-.=.||-++-.+++-.+.++|. =+.
T Consensus 997 ~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~ 1076 (1702)
T KOG0915|consen 997 KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVK 1076 (1702)
T ss_pred HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHH
Confidence 5777887766557887777 556667778999999999999999999999999999999999998 568
Q ss_pred HhHHhHHHHHHHHhhcCCCCCch---------------------------HHHhhHHHHH--HhccCCCHHHHHHHHHHH
Q psy18155 85 DLLDSVLPQLYAETAVKPQSIDP---------------------------LLRQTIGDFL--SALKDSDLNVRRVALVAF 135 (185)
Q Consensus 85 ~~l~~~Lp~L~~~t~~~~~~vr~---------------------------~L~~~m~~~l--~~l~D~d~~Vr~~A~~~L 135 (185)
+++..+.-.+|.---|=.|.||+ .++ .+-||+ .++..+-.+||+.+..++
T Consensus 1077 e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gims~v~evr~~si~tl 1155 (1702)
T KOG0915|consen 1077 EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILPFLLDEGIMSKVNEVRRFSIGTL 1155 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHHHHhccCcccchHHHHHHHHHHH
Confidence 99999999999988887888876 111 112565 233356789999999999
Q ss_pred HHHhhcChhhHHHhHhhHhhhh
Q psy18155 136 NSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 136 ~~~a~~~p~lv~~~L~~llp~L 157 (185)
...+-..+..+.|++++++|.|
T Consensus 1156 ~dl~Kssg~~lkP~~~~LIp~l 1177 (1702)
T KOG0915|consen 1156 MDLAKSSGKELKPHFPKLIPLL 1177 (1702)
T ss_pred HHHHHhchhhhcchhhHHHHHH
Confidence 9999999999999999999999
No 21
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.61 E-value=0.016 Score=47.38 Aligned_cols=148 Identities=20% Similarity=0.166 Sum_probs=86.9
Q ss_pred HHhhcccCCccc---hHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhH
Q psy18155 8 CLGKLTLIDPSN---LLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVI 84 (185)
Q Consensus 8 ~lg~l~~~~~~~---~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~ 84 (185)
+=++-.-.+|.+ .|-+|...+... . ..+.+..+=..+..++..+...+.|....|-+.|+.++...+.+-..-+.
T Consensus 12 l~~~~~~~~W~~r~~al~~L~~l~~~~-~-~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~ 89 (228)
T PF12348_consen 12 LEKKESESDWEERVEALQKLRSLIKGN-A-PEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE 89 (228)
T ss_dssp HHHHHT-SSHHHHHHHHHHHHHHHHH--B------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH
T ss_pred HhccCCccCHHHHHHHHHHHHHHHHcC-C-ccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 335556788974 455555555543 1 11222222224566667788899999999999999999988887777799
Q ss_pred HhHHhHHHHHHHHhhcCCCCCchHHH-------------hh--HHHHHHhccCCCHHHHHHHHHHHHHHhhcCh---hhH
Q psy18155 85 DLLDSVLPQLYAETAVKPQSIDPLLR-------------QT--IGDFLSALKDSDLNVRRVALVAFNSAAHNKP---SLV 146 (185)
Q Consensus 85 ~~l~~~Lp~L~~~t~~~~~~vr~~L~-------------~~--m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p---~lv 146 (185)
++++.++|.|++.+.+....|++.-. +. ...+..+.++.+..+|..++..+.......+ ..+
T Consensus 90 ~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 90 PYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 99999999999999998877765111 11 2244568889999999999988887766666 222
Q ss_pred H--HhHhhHhhhh
Q psy18155 147 I--DLLDSVLPQL 157 (185)
Q Consensus 147 ~--~~L~~llp~L 157 (185)
. ..++.+.+.+
T Consensus 170 ~~~~~~~~l~~~l 182 (228)
T PF12348_consen 170 QKSAFLKQLVKAL 182 (228)
T ss_dssp --HHHHHHHHHHH
T ss_pred cccchHHHHHHHH
Confidence 2 2245666665
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.55 E-value=0.0075 Score=43.18 Aligned_cols=99 Identities=20% Similarity=0.262 Sum_probs=67.1
Q ss_pred hHHHHHHhhcCCCcccccc------------hhhhhHHHH-hhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHh
Q psy18155 20 LLPRLQESLKSNSALMRTT------------PQSIDPLLR-QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDL 86 (185)
Q Consensus 20 ~l~~L~~~l~~~~~~~r~~------------~~~~d~~L~-~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~ 86 (185)
+++.|.++++++++.+|.. +.....+++ ..+|.++..+++++..+|+.|+.++...+.+.+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6778888888777666611 222222344 778999999999999999999999987766554311111
Q ss_pred HHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHh
Q psy18155 87 LDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAA 139 (185)
Q Consensus 87 l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a 139 (185)
.+. ..+..+++.+++++.++++.|+.+|...+
T Consensus 88 ~~~---------------------g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEA---------------------GGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHC---------------------CChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 110 02456667777788999999998887653
No 23
>KOG0212|consensus
Probab=96.50 E-value=0.041 Score=51.96 Aligned_cols=139 Identities=15% Similarity=0.224 Sum_probs=101.8
Q ss_pred cchHHHHHHhhcCCCcccccchhhhhHHH---------HhhHHHHHHhc----cCCChHHHHHHHHHHHHhhhcCch-hh
Q psy18155 18 SNLLPRLQESLKSNSALMRTTPQSIDPLL---------RQTIGDFLSAL----KDSDLNVRRVALVAFNSAAHNKPS-LV 83 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~~~r~~~~~~d~~L---------~~~i~~fl~~l----~d~d~~vR~~al~~ln~~~~~kp~-ll 83 (185)
+++-..|.++..+.++.+|+.+.-+|+.+ .+-++.|+..+ ..-++..|+.-+.-++ .+.+.|. -+
T Consensus 124 n~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~-~Lds~P~~~m 202 (675)
T KOG0212|consen 124 NEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLY-VLDSVPDLEM 202 (675)
T ss_pred HHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHhcCCcHHH
Confidence 56666777777788899998888888842 34456666544 4779999998877665 4566666 57
Q ss_pred HHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhc--------------------cCCCHHHHHHHHHHHHHHhhcCh
Q psy18155 84 IDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSAL--------------------KDSDLNVRRVALVAFNSAAHNKP 143 (185)
Q Consensus 84 ~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l--------------------~D~d~~Vr~~A~~~L~~~a~~~p 143 (185)
..++++|+++||+..+|.++.||+.=..+|+.|++.+ +.++.++++-|..-+.+....-|
T Consensus 203 ~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 203 ISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred HhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999976555666666433 34577888888888888777666
Q ss_pred hhHHHhHhhHhhhh
Q psy18155 144 SLVIDLLDSVLPQL 157 (185)
Q Consensus 144 ~lv~~~L~~llp~L 157 (185)
.-+.+++.+++-.+
T Consensus 283 ~~~l~~~s~il~~i 296 (675)
T KOG0212|consen 283 RDLLLYLSGILTAI 296 (675)
T ss_pred cchhhhhhhhhhhc
Confidence 66666666544333
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.41 E-value=0.044 Score=49.80 Aligned_cols=117 Identities=19% Similarity=0.246 Sum_probs=77.7
Q ss_pred CccchHHHHHHhhcCCCcccc-------cchhhhhH-HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhH
Q psy18155 16 DPSNLLPRLQESLKSNSALMR-------TTPQSIDP-LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLL 87 (185)
Q Consensus 16 ~~~~~l~~L~~~l~~~~~~~r-------~~~~~~d~-~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l 87 (185)
+-..+.+.+.+++.+++...+ ......|. .+--.+..+..-++|+|+.+|..||.++.... ..+..
T Consensus 39 ~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~------~~~~~ 112 (526)
T PF01602_consen 39 DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR------TPEMA 112 (526)
T ss_dssp --GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-------SHHHH
T ss_pred CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc------ccchh
Confidence 335777778888777776666 11111122 23334566777888999999999988887654 34455
Q ss_pred HhHHHHHHHHhhcCCCCCch---------------HHHh-hHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 88 DSVLPQLYAETAVKPQSIDP---------------LLRQ-TIGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 88 ~~~Lp~L~~~t~~~~~~vr~---------------~L~~-~m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
+.++|.+.+..+++.+.||+ .+.. .+..+...+.|.|..|+..|+.++...
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 66777777777777777776 1122 245566777888999999999888887
No 25
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.33 E-value=0.019 Score=39.63 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=16.5
Q ss_pred HHHHHHhc-cCCChHHHHHHHHHHH
Q psy18155 50 IGDFLSAL-KDSDLNVRRVALVAFN 73 (185)
Q Consensus 50 i~~fl~~l-~d~d~~vR~~al~~ln 73 (185)
||.++..+ +|+|..||..|+.++.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~ 25 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG 25 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 45566666 7777777777766665
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.09 E-value=0.083 Score=49.07 Aligned_cols=149 Identities=22% Similarity=0.291 Sum_probs=91.3
Q ss_pred HHHHhhcccCC-ccchHHHHHHhhcCCCcccccch----hh----hhH----HH-HhhHHHHHHhccCCChHHHHHHHHH
Q psy18155 6 AECLGKLTLID-PSNLLPRLQESLKSNSALMRTTP----QS----IDP----LL-RQTIGDFLSALKDSDLNVRRVALVA 71 (185)
Q Consensus 6 ae~lg~l~~~~-~~~~l~~L~~~l~~~~~~~r~~~----~~----~d~----~L-~~~i~~fl~~l~d~d~~vR~~al~~ 71 (185)
..|++...+.+ -+++.+.|++.+.++++.+|.-+ .. -+. .. ..+++..+.+++|+|..|...|..+
T Consensus 63 ~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~ 142 (503)
T PF10508_consen 63 KRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKA 142 (503)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33444333332 35677778888889999988221 11 111 11 3557778899999999999999999
Q ss_pred HHHhhhcCchhhHHhHHh-HHHHHHHHhhcCCCCCch------------------HHHh--hHHHHHHhccCCCHHHHHH
Q psy18155 72 FNSAAHNKPSLVIDLLDS-VLPQLYAETAVKPQSIDP------------------LLRQ--TIGDFLSALKDSDLNVRRV 130 (185)
Q Consensus 72 ln~~~~~kp~ll~~~l~~-~Lp~L~~~t~~~~~~vr~------------------~L~~--~m~~~l~~l~D~d~~Vr~~ 130 (185)
+...+.+++.+ ...++. +++.|-+...-.++.+|- .... .+..++..+.++|.-|+..
T Consensus 143 L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqln 221 (503)
T PF10508_consen 143 LKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLN 221 (503)
T ss_pred HHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHH
Confidence 98888776543 222222 244444434333333331 1111 2346677888899999999
Q ss_pred HHHHHHHHhhcChhhHHHhHh--hHhhhh
Q psy18155 131 ALVAFNSAAHNKPSLVIDLLD--SVLPQL 157 (185)
Q Consensus 131 A~~~L~~~a~~~p~lv~~~L~--~llp~L 157 (185)
|+.+|...+. .++.. .+|. .+++.|
T Consensus 222 alell~~La~-~~~g~-~yL~~~gi~~~L 248 (503)
T PF10508_consen 222 ALELLSELAE-TPHGL-QYLEQQGIFDKL 248 (503)
T ss_pred HHHHHHHHHc-ChhHH-HHHHhCCHHHHH
Confidence 9999999988 45533 4443 244444
No 27
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.09 E-value=0.022 Score=51.40 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=64.2
Q ss_pred cchHHHHHHhhcCCCcccc------------cchhhhhH-HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhH
Q psy18155 18 SNLLPRLQESLKSNSALMR------------TTPQSIDP-LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVI 84 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~~~r------------~~~~~~d~-~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~ 84 (185)
..++|.|.+..++.+...+ ..|.++=. .+..++|=.++++.-+|.++|..+|.|+..++...|+++.
T Consensus 322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~ 401 (415)
T PF12460_consen 322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS 401 (415)
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3678888888876554443 33332222 4777888889999999999999999999999999999999
Q ss_pred HhHHhHHHHHHHH
Q psy18155 85 DLLDSVLPQLYAE 97 (185)
Q Consensus 85 ~~l~~~Lp~L~~~ 97 (185)
+|++.++|.|.+.
T Consensus 402 ~hl~sLI~~LL~l 414 (415)
T PF12460_consen 402 EHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999764
No 28
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.05 E-value=0.057 Score=44.03 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=61.6
Q ss_pred hhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhH-HHHHHHHhhcCCCCCchH-----------
Q psy18155 41 SIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSV-LPQLYAETAVKPQSIDPL----------- 108 (185)
Q Consensus 41 ~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~-Lp~L~~~t~~~~~~vr~~----------- 108 (185)
.++.++..++|.++..++++...||..|-.|+.+.+.+-+ ....+ ++.+....+.++..+|..
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3555678888888888888888899999888887776544 11122 444444455555555431
Q ss_pred -------------HHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhH
Q psy18155 109 -------------LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSV 153 (185)
Q Consensus 109 -------------L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~l 153 (185)
+......+..+++|.+.+||..|-.+|.....+.|.-....++.+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l 219 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSML 219 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-------
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcc
Confidence 111223455688999999999999888887666666544444333
No 29
>KOG0915|consensus
Probab=95.76 E-value=0.051 Score=56.09 Aligned_cols=101 Identities=17% Similarity=0.296 Sum_probs=83.0
Q ss_pred hhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhc
Q psy18155 41 SIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSAL 120 (185)
Q Consensus 41 ~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l 120 (185)
.+..++..+||++...==|||.+|+++..+.+|+. +.|.++-|++.+...+...+-.+
T Consensus 991 kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~L----------------------i~D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen 991 KLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNAL----------------------ITDSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred hhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHh----------------------ccChHHHHHHHHHHHHHHHHHhc
Confidence 34447999999999888899999999999999976 66766777878777788888888
Q ss_pred cCCCHHHHHHHHHHHHHHhhcChhh-HHHhHhhHhhhhhhh-hhh
Q psy18155 121 KDSDLNVRRVALVAFNSAAHNKPSL-VIDLLDSVLPQLYAE-TAV 163 (185)
Q Consensus 121 ~D~d~~Vr~~A~~~L~~~a~~~p~l-v~~~L~~llp~Ly~e-t~v 163 (185)
.+..--||-++|++|+...+.+|.- +.+.++++...++.- +||
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI 1093 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI 1093 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999988873 567778877777443 444
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.73 E-value=0.046 Score=37.62 Aligned_cols=54 Identities=28% Similarity=0.322 Sum_probs=39.5
Q ss_pred HHHHHHhh-cCCCcccccchhhhhH-H-HHhhHHHHHHhccCCChHHHHHHHHHHHH
Q psy18155 21 LPRLQESL-KSNSALMRTTPQSIDP-L-LRQTIGDFLSALKDSDLNVRRVALVAFNS 74 (185)
Q Consensus 21 l~~L~~~l-~~~~~~~r~~~~~~d~-~-L~~~i~~fl~~l~d~d~~vR~~al~~ln~ 74 (185)
+|.|.+.+ +++++.+|..+...=. + -...+|.++.+++|+|..||+.|+.++..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 57 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGR 57 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 57888888 7888888844432211 1 23457788899999999999999888873
No 31
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.66 E-value=0.12 Score=41.06 Aligned_cols=120 Identities=22% Similarity=0.298 Sum_probs=81.9
Q ss_pred cchHHHHHHhhcCCCcccccchhhh----------hHH---HHhhHHHHHHhccCCC-hHHHHHHHHHHHHhhhcCchhh
Q psy18155 18 SNLLPRLQESLKSNSALMRTTPQSI----------DPL---LRQTIGDFLSALKDSD-LNVRRVALVAFNSAAHNKPSLV 83 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~~~r~~~~~~----------d~~---L~~~i~~fl~~l~d~d-~~vR~~al~~ln~~~~~kp~ll 83 (185)
..+.-++.+++.|+++..||....+ |.+ -...+..++..++.++ ..++..|+.+++
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~---------- 93 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLT---------- 93 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----------
Confidence 4555667777888888888443322 111 2334555566666543 346777766665
Q ss_pred HHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHH----HhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhh
Q psy18155 84 IDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFL----SALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 84 ~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l----~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly 158 (185)
.||..+...++..|++.-|.++.|+ ..+++ ..+...++..|.+...+.|...+|+-.++--.++
T Consensus 94 ---------~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 94 ---------RLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALL 161 (165)
T ss_pred ---------HHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHH
Confidence 6788899999999998888877544 44432 5677888889999888889999999887755443
No 32
>KOG0414|consensus
Probab=95.64 E-value=0.081 Score=53.45 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=38.6
Q ss_pred hHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhh
Q psy18155 112 TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 112 ~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly 158 (185)
+++.|--++-|++.+||-.|-..|.+.++. .+.+...||+++-.|-
T Consensus 1036 ql~eMA~cl~D~~~~IsdlAk~FF~Els~k-~n~iynlLPdil~~Ls 1081 (1251)
T KOG0414|consen 1036 QLSEMALCLEDPNAEISDLAKSFFKELSSK-GNTIYNLLPDILSRLS 1081 (1251)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHHhhhc-ccchhhhchHHHHhhc
Confidence 345778899999999999999999998655 5778899999988873
No 33
>KOG0166|consensus
Probab=95.59 E-value=0.13 Score=48.17 Aligned_cols=88 Identities=25% Similarity=0.348 Sum_probs=65.8
Q ss_pred cchHHHHHHhhcCCCcccc------------cchhhhhHHHH-hhHHHHHHhccCCCh-HHHHHHHHHHHHhhhcC-chh
Q psy18155 18 SNLLPRLQESLKSNSALMR------------TTPQSIDPLLR-QTIGDFLSALKDSDL-NVRRVALVAFNSAAHNK-PSL 82 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~~~r------------~~~~~~d~~L~-~~i~~fl~~l~d~d~-~vR~~al~~ln~~~~~k-p~l 82 (185)
...+|.+..++.|++++++ |++.-=|-+++ ..++++|.++..++. .+.|.+.-+++-+-.+| |+-
T Consensus 151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 3678999999999998888 33332222343 457788888888775 45555556665555555 999
Q ss_pred hHHhHHhHHHHHHHHhhcCCCCC
Q psy18155 83 VIDLLDSVLPQLYAETAVKPQSI 105 (185)
Q Consensus 83 l~~~l~~~Lp~L~~~t~~~~~~v 105 (185)
-.+.+..+||.|.......++.|
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~V 253 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEV 253 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999988877
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=95.57 E-value=0.17 Score=49.53 Aligned_cols=94 Identities=18% Similarity=0.279 Sum_probs=50.1
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch-------------HHHhhHHH
Q psy18155 49 TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP-------------LLRQTIGD 115 (185)
Q Consensus 49 ~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~-------------~L~~~m~~ 115 (185)
+.+..+..+..+|..+||..-..+...+..+|.+..-.+++| -+...++++.||- ++...+.+
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl----~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~ 144 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTF----LQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEP 144 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHH----HHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 444444555555555555554444444455555433333333 2333444444432 22223345
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHhhcChhhH
Q psy18155 116 FLSALKDSDLNVRRVALVAFNSAAHNKPSLV 146 (185)
Q Consensus 116 ~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv 146 (185)
+..++.|.+.-||+.|.+++.+.-+..|+++
T Consensus 145 lkk~L~D~~pYVRKtAalai~Kly~~~pelv 175 (746)
T PTZ00429 145 LRRAVADPDPYVRKTAAMGLGKLFHDDMQLF 175 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCcccc
Confidence 6667777777777777777777766666654
No 35
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.44 E-value=0.088 Score=47.96 Aligned_cols=110 Identities=21% Similarity=0.082 Sum_probs=62.3
Q ss_pred cchHHHHHHhhcCCCcccccc-hhhhhH-HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHH
Q psy18155 18 SNLLPRLQESLKSNSALMRTT-PQSIDP-LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLY 95 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~~~r~~-~~~~d~-~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~ 95 (185)
+..+..|.+.++++++.+|.. +..+-. -.....+.++.+++++++.||+.++..+.. +. .. -.+.|-
T Consensus 85 ~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~--r~-~~--------~~~~L~ 153 (410)
T TIGR02270 85 ALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGA--HR-HD--------PGPALE 153 (410)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHh--hc-cC--------hHHHHH
Confidence 345788888888877767632 222222 123345566677788888888888755542 11 11 112222
Q ss_pred HHhhcCCCCCchHHHhh---------HHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 96 AETAVKPQSIDPLLRQT---------IGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 96 ~~t~~~~~~vr~~L~~~---------m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
...++.+..||.-=... +......++|.|.+||+.|..++...
T Consensus 154 ~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 154 AALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 22345555555411111 22445678899999999998666443
No 36
>KOG0212|consensus
Probab=95.40 E-value=0.079 Score=50.09 Aligned_cols=116 Identities=19% Similarity=0.248 Sum_probs=73.2
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCC-------------------
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSI------------------- 105 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~v------------------- 105 (185)
|+..++|+.+.+++|+|..||-.|-.++--.+..--+.+..+.+.+.-.|-+.+.|.+..|
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA 160 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc
Confidence 7999999999999999999999997666434333333344444444444444444444444
Q ss_pred -----------------------chHHHh-------------------hHHHHHHhccCCCHHHHHHHHHHHH---HHhh
Q psy18155 106 -----------------------DPLLRQ-------------------TIGDFLSALKDSDLNVRRVALVAFN---SAAH 140 (185)
Q Consensus 106 -----------------------r~~L~~-------------------~m~~~l~~l~D~d~~Vr~~A~~~L~---~~a~ 140 (185)
|..+.. .++-.+..++|+..+||..+-.++. ....
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 222211 1123446889999999998886444 4466
Q ss_pred cChhhHHHhHhhHhhhhhhhhh
Q psy18155 141 NKPSLVIDLLDSVLPQLYAETA 162 (185)
Q Consensus 141 ~~p~lv~~~L~~llp~Ly~et~ 162 (185)
++|..+ ..++.++.+.....
T Consensus 241 s~P~s~--d~~~~i~vlv~~l~ 260 (675)
T KOG0212|consen 241 SSPSSM--DYDDMINVLVPHLQ 260 (675)
T ss_pred cCcccc--Ccccchhhcccccc
Confidence 888854 33666666644433
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=95.30 E-value=0.24 Score=48.45 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=32.0
Q ss_pred HHHHHHhhcCCCcccccchh------hhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCc
Q psy18155 21 LPRLQESLKSNSALMRTTPQ------SIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKP 80 (185)
Q Consensus 21 l~~L~~~l~~~~~~~r~~~~------~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp 80 (185)
+..+++=+++++|.+|..+- ....++.++++.+..++.|+++-||+.|..|+.-.-+..|
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p 172 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM 172 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc
Confidence 44555555556666662222 1122355555566666666666677666666654444444
No 38
>KOG2259|consensus
Probab=95.23 E-value=0.045 Score=52.53 Aligned_cols=114 Identities=24% Similarity=0.355 Sum_probs=77.0
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHh-HHH-------------HHHHHh----------hcCCCCC
Q psy18155 50 IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS-VLP-------------QLYAET----------AVKPQSI 105 (185)
Q Consensus 50 i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~-~Lp-------------~L~~~t----------~~~~~~v 105 (185)
..+.=.+++|-...||--|-..+..+-.-.-+.+..-||. ++. .+|..- ...+|..
T Consensus 283 F~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~ 362 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEED 362 (823)
T ss_pred HHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhc
Confidence 3344466666666666666656655555556666666765 555 566554 1222222
Q ss_pred ch---HHHhh--HHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhhhhhhh
Q psy18155 106 DP---LLRQT--IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAV 163 (185)
Q Consensus 106 r~---~L~~~--m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly~et~v 163 (185)
++ -+.|+ .|.|.|++.|+=+|||++|...+.+.|.++|.--...|+=++..+++|.++
T Consensus 363 d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 363 DEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEV 425 (823)
T ss_pred cccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHH
Confidence 22 11121 378999999999999999999999999999997777788888888877543
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.14 E-value=0.15 Score=46.41 Aligned_cols=108 Identities=21% Similarity=0.326 Sum_probs=81.1
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch-------------HHHhh
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP-------------LLRQT 112 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~-------------~L~~~ 112 (185)
..+..+..+.++.+.|...||.+-..+....+..|+.+.-..+.+ .+....+.+.+|- ...+.
T Consensus 40 ~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l----~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l 115 (526)
T PF01602_consen 40 ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSL----QKDLNSPNPYIRGLALRTLSNIRTPEMAEPL 115 (526)
T ss_dssp -GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHH----HHHHCSSSHHHHHHHHHHHHHH-SHHHHHHH
T ss_pred CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHH----HHhhcCCCHHHHHHHHhhhhhhcccchhhHH
Confidence 346677888899999999999999999999999999555544444 4455555555543 22223
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHH-hHhhHhhhh
Q psy18155 113 IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVID-LLDSVLPQL 157 (185)
Q Consensus 113 m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~-~L~~llp~L 157 (185)
+..+...+.|++..||+.|+.++.......|+.+.+ .++.+...|
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL 161 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLL 161 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHT
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhc
Confidence 346677888999999999999999999999998876 466666655
No 40
>KOG2160|consensus
Probab=95.10 E-value=0.24 Score=44.23 Aligned_cols=81 Identities=25% Similarity=0.307 Sum_probs=61.2
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHh-HHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHH
Q psy18155 50 IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS-VLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVR 128 (185)
Q Consensus 50 i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~-~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr 128 (185)
....+..+++++..+|..|...+.+++.|.|-.-...+.. +++.|++..+ .|++.++|
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---------------------~~~~~~~r 184 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---------------------SDDPNTVR 184 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---------------------cCCCchHH
Confidence 3455569999999999999999999999999877666644 6666655443 26677888
Q ss_pred HHHHHHHHHHhhcChhhHHHhHh
Q psy18155 129 RVALVAFNSAAHNKPSLVIDLLD 151 (185)
Q Consensus 129 ~~A~~~L~~~a~~~p~lv~~~L~ 151 (185)
.-|+.++++...|-+......+.
T Consensus 185 ~kaL~AissLIRn~~~g~~~fl~ 207 (342)
T KOG2160|consen 185 TKALFAISSLIRNNKPGQDEFLK 207 (342)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHh
Confidence 88888888887766665655543
No 41
>KOG1242|consensus
Probab=94.90 E-value=0.85 Score=43.26 Aligned_cols=117 Identities=17% Similarity=0.219 Sum_probs=79.6
Q ss_pred hhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHH---------
Q psy18155 39 PQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLL--------- 109 (185)
Q Consensus 39 ~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L--------- 109 (185)
+..++-.+..+||..-..+.|..++||+.+..|+.-+-..-- .+-|..+.|.|.+...+....+.+.+
T Consensus 286 p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid---N~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV 362 (569)
T KOG1242|consen 286 PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID---NPDIQKIIPTLLDALADPSCYTPECLDSLGATTFV 362 (569)
T ss_pred hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHhcCcccchHHHHHhhcceeee
Confidence 334444466778888899999999999999988865522111 12256688888888888874443311
Q ss_pred ----Hh---hHHHHH-HhccCCCHHHHHHHHHHHHHHhhc--ChhhHHHhHhhHhhhhh
Q psy18155 110 ----RQ---TIGDFL-SALKDSDLNVRRVALVAFNSAAHN--KPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 110 ----~~---~m~~~l-~~l~D~d~~Vr~~A~~~L~~~a~~--~p~lv~~~L~~llp~Ly 158 (185)
.| .|-|.+ .++.+-+-+.+|.++..+--.+.. .|.-+.++|++++|.|+
T Consensus 363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk 421 (569)
T KOG1242|consen 363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK 421 (569)
T ss_pred eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence 11 234555 477777888888888655444443 47778999999999993
No 42
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.45 E-value=0.085 Score=30.26 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=23.2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhh
Q psy18155 113 IGDFLSALKDSDLNVRRVALVAFNSAAH 140 (185)
Q Consensus 113 m~~~l~~l~D~d~~Vr~~A~~~L~~~a~ 140 (185)
+..+++.++|++.+||..|+.+|...+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999988764
No 43
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=94.33 E-value=1.3 Score=37.91 Aligned_cols=131 Identities=24% Similarity=0.341 Sum_probs=83.6
Q ss_pred cchHHHHHHhhcC-CCcccc---------cchhhhhH-HHH--hhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhH
Q psy18155 18 SNLLPRLQESLKS-NSALMR---------TTPQSIDP-LLR--QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVI 84 (185)
Q Consensus 18 ~~~l~~L~~~l~~-~~~~~r---------~~~~~~d~-~L~--~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~ 84 (185)
++-+..|..+|++ .+|.++ .++-+... +.. .-++.+...+++|++.+|..|+.+++-.+-+.....
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~- 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE- 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH-
Confidence 4556888888874 467666 12212222 222 336677799999999999999999986654443322
Q ss_pred HhHHhHHHHHHHHhhcCCC--CC-----------------chHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhh
Q psy18155 85 DLLDSVLPQLYAETAVKPQ--SI-----------------DPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSL 145 (185)
Q Consensus 85 ~~l~~~Lp~L~~~t~~~~~--~v-----------------r~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~l 145 (185)
.+..+++.+-+++...+- .+ ...+..++..|++.+...+..+|.-++..|.-.+.+ |..
T Consensus 90 -~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~ 167 (254)
T PF04826_consen 90 -QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDM 167 (254)
T ss_pred -HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC-HHH
Confidence 234455555555444321 11 236677788899988878888998898877777665 555
Q ss_pred HHHhHh
Q psy18155 146 VIDLLD 151 (185)
Q Consensus 146 v~~~L~ 151 (185)
.+..+.
T Consensus 168 ~~~Ll~ 173 (254)
T PF04826_consen 168 TRELLS 173 (254)
T ss_pred HHHHHh
Confidence 555553
No 44
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.92 E-value=0.16 Score=32.41 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.3
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHH
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFN 73 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln 73 (185)
++..++|.++..++|++..||..|..++.
T Consensus 25 ~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 25 YLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 45667788889999999999999987774
No 45
>KOG1967|consensus
Probab=93.66 E-value=0.47 Score=47.20 Aligned_cols=123 Identities=19% Similarity=0.251 Sum_probs=85.9
Q ss_pred chHHHHHHhhcCCCcccc------------cchhhhhH-HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHH
Q psy18155 19 NLLPRLQESLKSNSALMR------------TTPQSIDP-LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVID 85 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r------------~~~~~~d~-~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~ 85 (185)
++.|.|.+...+.....+ ..|.+.=. ....+.|=+|+++.=||..||-.++.|+.....-.+.++..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 677888888875544555 22221000 13344556779999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChh-hHHHhHhhHhhhhhhh
Q psy18155 86 LLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS-LVIDLLDSVLPQLYAE 160 (185)
Q Consensus 86 ~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~-lv~~~L~~llp~Ly~e 160 (185)
|++++.|.+....++.+.. ---||..|+.-|++....-|. .+.++-++++-+|.+-
T Consensus 947 ~~~Tlvp~lLsls~~~~n~-------------------~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~ 1003 (1030)
T KOG1967|consen 947 HLSTLVPYLLSLSSDNDNN-------------------MMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKI 1003 (1030)
T ss_pred HHhHHHHHHHhcCCCCCcc-------------------hhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhc
Confidence 9999999997777765321 145888888888888775554 2445556665555443
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.41 E-value=1.3 Score=41.26 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=60.6
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhH-HhHHHHHHHHhhcCCCCCch----HHH------------
Q psy18155 48 QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLL-DSVLPQLYAETAVKPQSIDP----LLR------------ 110 (185)
Q Consensus 48 ~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l-~~~Lp~L~~~t~~~~~~vr~----~L~------------ 110 (185)
...+-+...+.|++..||+.++..+.-.+++....+.-.. ..+++.+.....+++..|-+ .|.
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 3344455999999999999999998777766655444343 33777777777777666633 110
Q ss_pred --hh-HHHHHHhccCCCHHHHHHHHHHHHHHhhcChhh
Q psy18155 111 --QT-IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSL 145 (185)
Q Consensus 111 --~~-m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~l 145 (185)
+. ...+...++..+..+|.-+|.++...+...+..
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 00 112223332235667777777777766666664
No 47
>KOG1058|consensus
Probab=93.37 E-value=3.1 Score=41.02 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=87.3
Q ss_pred hhHHHHHhhcccCCcc---chHHHHHHhhcCCCcccc-----------------------------------------cc
Q psy18155 3 NVVAECLGKLTLIDPS---NLLPRLQESLKSNSALMR-----------------------------------------TT 38 (185)
Q Consensus 3 ~vvae~lg~l~~~~~~---~~l~~L~~~l~~~~~~~r-----------------------------------------~~ 38 (185)
.||.|.+.+-+..+|. .++.-+..+|.+.|+.++ |.
T Consensus 224 lViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldr 303 (948)
T KOG1058|consen 224 LVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDR 303 (948)
T ss_pred HHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHH
Confidence 3677777777776664 367777777776666555 00
Q ss_pred h---hhhhH-HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcC----CCCCchHHH
Q psy18155 39 P---QSIDP-LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVK----PQSIDPLLR 110 (185)
Q Consensus 39 ~---~~~d~-~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~----~~~vr~~L~ 110 (185)
- ...++ ++..++-++|..+..||++||+.++...--.+..+- .+-+-++|..=+..|... ....|..|.
T Consensus 304 l~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN---vediv~~Lkke~~kT~~~e~d~~~~yRqlLi 380 (948)
T KOG1058|consen 304 LSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN---VEDIVQFLKKEVMKTHNEESDDNGKYRQLLI 380 (948)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc---HHHHHHHHHHHHHhccccccccchHHHHHHH
Confidence 0 01111 367889999999999999999999765432221111 112222333333344443 111233332
Q ss_pred hh---------------HHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhh
Q psy18155 111 QT---------------IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 111 ~~---------------m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~L 157 (185)
.- +...+..++|.+..-+...++.+.++.+.-|++=...+.+++..+
T Consensus 381 ktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~ 442 (948)
T KOG1058|consen 381 KTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETF 442 (948)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhh
Confidence 21 235667888877766665566667777877875334444444444
No 48
>KOG1967|consensus
Probab=93.30 E-value=0.12 Score=51.11 Aligned_cols=67 Identities=25% Similarity=0.298 Sum_probs=53.2
Q ss_pred CCccchHHHHHHhhcCCCcccc------------cchhhhhHHHHhhHHHHHHhccCCC---hHHHHHHHHHHHHhhhcC
Q psy18155 15 IDPSNLLPRLQESLKSNSALMR------------TTPQSIDPLLRQTIGDFLSALKDSD---LNVRRVALVAFNSAAHNK 79 (185)
Q Consensus 15 ~~~~~~l~~L~~~l~~~~~~~r------------~~~~~~d~~L~~~i~~fl~~l~d~d---~~vR~~al~~ln~~~~~k 79 (185)
.+-|.++|-|.|.++=+|..+| -...-++++++-++|.++..-.|+| ..||-.||.|+++....-
T Consensus 905 p~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~ 984 (1030)
T KOG1967|consen 905 PQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRL 984 (1030)
T ss_pred cchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccC
Confidence 4558999999999998888887 2223344468999999998888887 679999999999886655
Q ss_pred ch
Q psy18155 80 PS 81 (185)
Q Consensus 80 p~ 81 (185)
|.
T Consensus 985 P~ 986 (1030)
T KOG1967|consen 985 PT 986 (1030)
T ss_pred CC
Confidence 53
No 49
>KOG1241|consensus
Probab=93.12 E-value=1.1 Score=43.96 Aligned_cols=143 Identities=18% Similarity=0.247 Sum_probs=95.8
Q ss_pred chHHHHHHhhcCCCccc---ccchhhhhHH------------HHhhHHHHH-HhccCCChHHHHHHHHHHHHhhhcCch-
Q psy18155 19 NLLPRLQESLKSNSALM---RTTPQSIDPL------------LRQTIGDFL-SALKDSDLNVRRVALVAFNSAAHNKPS- 81 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~---r~~~~~~d~~------------L~~~i~~fl-~~l~d~d~~vR~~al~~ln~~~~~kp~- 81 (185)
.++|.|.++|..++++- -|+|..--.. +-+++-+|+ +.+++||-.-|-+|..+|-+..+....
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~ 398 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPD 398 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchh
Confidence 78999999997543221 1555432221 224566788 799999999999999999988776544
Q ss_pred hhHHhHHhHHHHHHHHhhcCCCCCch---------------------HHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhh
Q psy18155 82 LVIDLLDSVLPQLYAETAVKPQSIDP---------------------LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAH 140 (185)
Q Consensus 82 ll~~~l~~~Lp~L~~~t~~~~~~vr~---------------------~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~ 140 (185)
=+.+...+.+|.+.+.-+|++-.|++ .+.+-+.-++.+++| ...|.-.+|-++...+.
T Consensus 399 ~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 399 KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAE 477 (859)
T ss_pred hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHH
Confidence 56777788999999999988777754 223334466788865 78888888866655543
Q ss_pred cChhh---------HHHhHhhHhhhhhhhhh
Q psy18155 141 NKPSL---------VIDLLDSVLPQLYAETA 162 (185)
Q Consensus 141 ~~p~l---------v~~~L~~llp~Ly~et~ 162 (185)
..+.. .-++++.++-.|.+-|+
T Consensus 478 a~~eA~~s~~qt~~~t~~y~~ii~~Ll~~td 508 (859)
T KOG1241|consen 478 AAYEAAVSNGQTDPATPFYEAIIGSLLKVTD 508 (859)
T ss_pred HHHHhccCCCCCCccchhHHHHHHHHHhhcc
Confidence 22221 22556666666654443
No 50
>KOG0166|consensus
Probab=93.11 E-value=0.99 Score=42.39 Aligned_cols=128 Identities=19% Similarity=0.227 Sum_probs=81.5
Q ss_pred chHHHHHHhhcC-CCcccc----cchhhh-----hH---H-HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhH
Q psy18155 19 NLLPRLQESLKS-NSALMR----TTPQSI-----DP---L-LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVI 84 (185)
Q Consensus 19 ~~l~~L~~~l~~-~~~~~r----~~~~~~-----d~---~-L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~ 84 (185)
.++|.+++.++. .++..| |+-..+ +. + =..-+|.|+.++.+|+..||.-|+-++.-.++..|. .+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~R 187 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CR 187 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HH
Confidence 678999999974 446666 111111 11 1 245688999999999999999999998666655554 44
Q ss_pred HhHHh--HHHHHHHHhhcCCC--CCch-------------------HHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhc
Q psy18155 85 DLLDS--VLPQLYAETAVKPQ--SIDP-------------------LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHN 141 (185)
Q Consensus 85 ~~l~~--~Lp~L~~~t~~~~~--~vr~-------------------~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~ 141 (185)
++.=. .++.|......... .+|+ .+.+.+.-....+...|.+|..-||.++...+..
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 44322 44444444443332 2222 2333444455677788999999999999988766
Q ss_pred ChhhHH
Q psy18155 142 KPSLVI 147 (185)
Q Consensus 142 ~p~lv~ 147 (185)
-+..+.
T Consensus 268 ~ne~iq 273 (514)
T KOG0166|consen 268 SNEKIQ 273 (514)
T ss_pred ChHHHH
Confidence 565544
No 51
>KOG1242|consensus
Probab=92.96 E-value=0.75 Score=43.65 Aligned_cols=156 Identities=20% Similarity=0.289 Sum_probs=103.8
Q ss_pred chhHHHHHhhccc----CCccchHHHHHHhhcCCCccccc-chhhhhHHH----------HhhHHHHHHhccCCChHHHH
Q psy18155 2 RNVVAECLGKLTL----IDPSNLLPRLQESLKSNSALMRT-TPQSIDPLL----------RQTIGDFLSALKDSDLNVRR 66 (185)
Q Consensus 2 r~vvae~lg~l~~----~~~~~~l~~L~~~l~~~~~~~r~-~~~~~d~~L----------~~~i~~fl~~l~d~d~~vR~ 66 (185)
|.+++.|+.-+.. .....+++.+.+++++.+..-|. .+..+=.+. ..++-.+-.+++|-...-||
T Consensus 113 q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~r 192 (569)
T KOG1242|consen 113 QRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNR 192 (569)
T ss_pred HHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcH
Confidence 5678888876554 34467888888999877655552 222111111 12233344677777666555
Q ss_pred -HHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch-------HHHhhH---------HHHHHhccCCCHHHHH
Q psy18155 67 -VALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP-------LLRQTI---------GDFLSALKDSDLNVRR 129 (185)
Q Consensus 67 -~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~-------~L~~~m---------~~~l~~l~D~d~~Vr~ 129 (185)
.++.++.++..+=-...-+.+-.++|.++....|+.+.||. .+..++ .+.+.++.+.----+.
T Consensus 193 e~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~ 272 (569)
T KOG1242|consen 193 EAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKM 272 (569)
T ss_pred HHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHH
Confidence 67777766654444556788889999999999999999976 111121 2444555443334567
Q ss_pred HHHHHHHHHhhcChhhHHHhHhhHhhhh
Q psy18155 130 VALVAFNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 130 ~A~~~L~~~a~~~p~lv~~~L~~llp~L 157 (185)
++...+...+...|..+...++.++|.|
T Consensus 273 aslellg~m~~~ap~qLs~~lp~iiP~l 300 (569)
T KOG1242|consen 273 ASLELLGAMADCAPKQLSLCLPDLIPVL 300 (569)
T ss_pred HHHHHHHHHHHhchHHHHHHHhHhhHHH
Confidence 7788888889999999999999999988
No 52
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.89 E-value=0.66 Score=45.46 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=61.4
Q ss_pred cchHHHHHHhhcCCCcccccchh-------hhhHHH-HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHh
Q psy18155 18 SNLLPRLQESLKSNSALMRTTPQ-------SIDPLL-RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS 89 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~~~r~~~~-------~~d~~L-~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~ 89 (185)
+.+.|.+.+...+.+...+--.. +...-+ --.++.|..-++|||+.+|..|+.++... =+.+.++.
T Consensus 54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l------~~~el~~~ 127 (757)
T COG5096 54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL------RVKELLGN 127 (757)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc------ChHHHHHH
Confidence 56666666666555554441111 011101 11356677788888888888888877633 13344555
Q ss_pred HHHHHHHHhhcCCCCCchH----------HHhhH----HHH---HHhccCCCHHHHHHHHHHHHHH
Q psy18155 90 VLPQLYAETAVKPQSIDPL----------LRQTI----GDF---LSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 90 ~Lp~L~~~t~~~~~~vr~~----------L~~~m----~~~---l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
+++.+-+..+++..-||+. +.+++ |.. ...+.|+|..|.+.|+.+|...
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 6666666666666666551 11111 111 1244566666666666666554
No 53
>KOG2149|consensus
Probab=92.82 E-value=1.2 Score=40.40 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=76.2
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHH---------------
Q psy18155 50 IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIG--------------- 114 (185)
Q Consensus 50 i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~--------------- 114 (185)
+-+++..++|-+.+||+-|+..+-....+.|..+..|+-.+++.+-....|++..||..+-..+.
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 34566889999999999999999999999999999999999999999999999999873322111
Q ss_pred -----HHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhh
Q psy18155 115 -----DFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQ 156 (185)
Q Consensus 115 -----~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~ 156 (185)
|...++-.--.+||--+..+|.-.+...|..+..+...+++.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n 186 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILEN 186 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 222233344566777777666666655544333333334443
No 54
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.68 E-value=0.9 Score=41.44 Aligned_cols=111 Identities=15% Similarity=0.021 Sum_probs=69.6
Q ss_pred cchHHHHHHhhc-CCCcccccchh-hhhHHHHhh-HHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHH
Q psy18155 18 SNLLPRLQESLK-SNSALMRTTPQ-SIDPLLRQT-IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 94 (185)
Q Consensus 18 ~~~l~~L~~~l~-~~~~~~r~~~~-~~d~~L~~~-i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L 94 (185)
+..++.|...++ ++++.++..+. .+...=++. +..++.++.|++..||+.+..+|.. .++. ...+.|
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~---i~~~-------~a~~~L 122 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGW---LGGR-------QAEPWL 122 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhc---CCch-------HHHHHH
Confidence 467777888884 56666663322 111111233 7778899999999999999777752 2222 222333
Q ss_pred HHHhhcCCCCCch-HHH-------hhHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 95 YAETAVKPQSIDP-LLR-------QTIGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 95 ~~~t~~~~~~vr~-~L~-------~~m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
-....+++..||. .+. ....+.+..++|++..||..|+.+|...
T Consensus 123 ~~~L~~~~p~vR~aal~al~~r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 123 EPLLAASEPPGRAIGLAALGAHRHDPGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred HHHhcCCChHHHHHHHHHHHhhccChHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 3334555555653 111 1133677888899999999999888764
No 55
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=92.62 E-value=0.13 Score=46.42 Aligned_cols=150 Identities=19% Similarity=0.293 Sum_probs=90.9
Q ss_pred HHhhcccCCcc---chHHHHHHhhcCCCcccc-----------cch-hhhhHHHHhhH-HHHHHhccCCChHHHHHHHHH
Q psy18155 8 CLGKLTLIDPS---NLLPRLQESLKSNSALMR-----------TTP-QSIDPLLRQTI-GDFLSALKDSDLNVRRVALVA 71 (185)
Q Consensus 8 ~lg~l~~~~~~---~~l~~L~~~l~~~~~~~r-----------~~~-~~~d~~L~~~i-~~fl~~l~d~d~~vR~~al~~ 71 (185)
|=||--..+|. ..+|.|.+++-+-++++. |-+ ..++.+|+.=+ ++++.++.|++.+|...||-+
T Consensus 229 cRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~ 308 (526)
T COG5064 229 CRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRS 308 (526)
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHh
Confidence 55666677885 578888888887777665 111 11222354434 467799999999999999877
Q ss_pred HHHhhhcCchhhHHhHHh-HHHHHHHHhhcCCCCCch-------------------HHHh-hHHHHHHhccCCCHHHHHH
Q psy18155 72 FNSAAHNKPSLVIDLLDS-VLPQLYAETAVKPQSIDP-------------------LLRQ-TIGDFLSALKDSDLNVRRV 130 (185)
Q Consensus 72 ln~~~~~kp~ll~~~l~~-~Lp~L~~~t~~~~~~vr~-------------------~L~~-~m~~~l~~l~D~d~~Vr~~ 130 (185)
..-.+...-.--...++- +|+++-...+-+.+.+|+ ++.. .+.+.+|.+.-.++-+|++
T Consensus 309 vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE 388 (526)
T COG5064 309 VGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE 388 (526)
T ss_pred hcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 743332222111122221 344443335556667765 2222 2347888888889999999
Q ss_pred HHHHHHHH---hhcChhhHHHhHhh-Hhhhh
Q psy18155 131 ALVAFNSA---AHNKPSLVIDLLDS-VLPQL 157 (185)
Q Consensus 131 A~~~L~~~---a~~~p~lv~~~L~~-llp~L 157 (185)
||-+++.+ ..++|+.++-..++ .+.+|
T Consensus 389 ACWAisNatsgg~~~PD~iryLv~qG~IkpL 419 (526)
T COG5064 389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPL 419 (526)
T ss_pred HHHHHHhhhccccCCchHHHHHHHccchhHH
Confidence 99555543 45889976654442 44444
No 56
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.99 E-value=2.2 Score=30.84 Aligned_cols=75 Identities=28% Similarity=0.292 Sum_probs=54.5
Q ss_pred HHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHH
Q psy18155 52 DFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVA 131 (185)
Q Consensus 52 ~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A 131 (185)
+-+..+.||.+=||..+|..+...+..+. .-..+ +...+.=|+..++|+|.=|=..|
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~----------------------~~~il~l~l~~L~d~DsyVYL~a 63 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVID----------------------IPKILDLFLSQLKDEDSYVYLNA 63 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhh----------------------HHHHHHHHHHHcCCCCchHHHHH
Confidence 34588999999999999999987765554 01111 11234567788888888899999
Q ss_pred HHHHHHHhhcChhhHHHh
Q psy18155 132 LVAFNSAAHNKPSLVIDL 149 (185)
Q Consensus 132 ~~~L~~~a~~~p~lv~~~ 149 (185)
...|.+.+...|.-+.+.
T Consensus 64 I~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 64 IKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHHHHChHHHHHH
Confidence 999999988888854433
No 57
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=91.42 E-value=0.87 Score=34.01 Aligned_cols=94 Identities=21% Similarity=0.160 Sum_probs=51.7
Q ss_pred hHHHHHhhcccCCccchHHHHHHhhcCCCcccc--------------cch---hhhhH------HHHhhHHHHH----Hh
Q psy18155 4 VVAECLGKLTLIDPSNLLPRLQESLKSNSALMR--------------TTP---QSIDP------LLRQTIGDFL----SA 56 (185)
Q Consensus 4 vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r--------------~~~---~~~d~------~L~~~i~~fl----~~ 56 (185)
++|++.-+--+..||++++.+.+.++++....+ +.. ...++ .+....|.++ +.
T Consensus 11 ~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~ 90 (148)
T PF08389_consen 11 VLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQI 90 (148)
T ss_dssp HHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666778899999999999987422221 110 00001 1333333222 33
Q ss_pred ccCCC----hHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHh
Q psy18155 57 LKDSD----LNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAET 98 (185)
Q Consensus 57 l~d~d----~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t 98 (185)
+.... ..+...++.|+.+.+...|--.... ..+++.+|+-.
T Consensus 91 l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l 135 (148)
T PF08389_consen 91 LSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLL 135 (148)
T ss_dssp HHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHT
T ss_pred HHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHc
Confidence 33222 7788888888888776555433322 33666666655
No 58
>KOG1059|consensus
Probab=90.78 E-value=3.2 Score=40.65 Aligned_cols=136 Identities=21% Similarity=0.277 Sum_probs=95.2
Q ss_pred cchHHHHHHhhcCCCcccccchhh--------hhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHh
Q psy18155 18 SNLLPRLQESLKSNSALMRTTPQS--------IDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS 89 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~~~r~~~~~--------~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~ 89 (185)
.++-+.++.++.+.-|-+|--+.- |=+.|++.+|+|-.-+.|||+.|-.+|++.+--.+...|+--. +
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL----~ 218 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL----Q 218 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc----c
Confidence 478888999999988888833331 1123899999999999999999999999999888877776322 2
Q ss_pred HHHHHHHHhhcCCCCC--------------------ch----------------HHHhhH--------------------
Q psy18155 90 VLPQLYAETAVKPQSI--------------------DP----------------LLRQTI-------------------- 113 (185)
Q Consensus 90 ~Lp~L~~~t~~~~~~v--------------------r~----------------~L~~~m-------------------- 113 (185)
+=|.+|+..+..++.- .+ +|-.|+
T Consensus 219 LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq 298 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ 298 (877)
T ss_pred ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH
Confidence 3355666555544421 11 111111
Q ss_pred ---HHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhh
Q psy18155 114 ---GDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 114 ---~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~L 157 (185)
...-..+.|+|.++|=.+|+++...+...|..|..+.+-++--|
T Consensus 299 LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL 345 (877)
T KOG1059|consen 299 LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCL 345 (877)
T ss_pred HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHh
Confidence 11112355888899999999999999999998888877777666
No 59
>KOG2025|consensus
Probab=90.02 E-value=1.7 Score=42.49 Aligned_cols=95 Identities=25% Similarity=0.321 Sum_probs=62.4
Q ss_pred HHhhcCCCcccc-----------cchhhhhH-HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHH
Q psy18155 25 QESLKSNSALMR-----------TTPQSIDP-LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLP 92 (185)
Q Consensus 25 ~~~l~~~~~~~r-----------~~~~~~d~-~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp 92 (185)
..-.+|++..+| |....+|. +.+.+.-+++.-+.|-.+.||+-|+.++..+
T Consensus 91 LRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrl----------------- 153 (892)
T KOG2025|consen 91 LRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRL----------------- 153 (892)
T ss_pred HhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH-----------------
Confidence 344467777777 66667777 6778888899999999999999999999844
Q ss_pred HHHHHhhcCCCC--CchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhH
Q psy18155 93 QLYAETAVKPQS--IDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLV 146 (185)
Q Consensus 93 ~L~~~t~~~~~~--vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv 146 (185)
+-..+++. |.+.+.. --.+|+..||||+|++++.-.....|.++
T Consensus 154 ----Q~d~~dee~~v~n~l~~------liqnDpS~EVRRaaLsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 154 ----QGDPKDEECPVVNLLKD------LIQNDPSDEVRRAALSNISVDNSTLPCIV 199 (892)
T ss_pred ----hcCCCCCcccHHHHHHH------HHhcCCcHHHHHHHHHhhccCcccchhHH
Confidence 11222222 2222111 12247778888888877666655556644
No 60
>KOG0213|consensus
Probab=89.95 E-value=3.5 Score=40.84 Aligned_cols=101 Identities=27% Similarity=0.304 Sum_probs=72.7
Q ss_pred CchhHHHHHhhccc-CCccchHHHHHHhhcCC-CcccccchhhhhH----H--------HHhhHHHHHHhccCCChHHHH
Q psy18155 1 TRNVVAECLGKLTL-IDPSNLLPRLQESLKSN-SALMRTTPQSIDP----L--------LRQTIGDFLSALKDSDLNVRR 66 (185)
Q Consensus 1 ~r~vvae~lg~l~~-~~~~~~l~~L~~~l~~~-~~~~r~~~~~~d~----~--------L~~~i~~fl~~l~d~d~~vR~ 66 (185)
+||+.|-.+|...- ..-|+++|-|....+|. |-.+|-|-..+=. + |.+++--.=..+.|..-+||.
T Consensus 492 VRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~ 571 (1172)
T KOG0213|consen 492 VRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRT 571 (1172)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhh
Confidence 47777777666554 55679999999999887 6677744333322 1 344433333678899999999
Q ss_pred HHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcC
Q psy18155 67 VALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVK 101 (185)
Q Consensus 67 ~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~ 101 (185)
.+-.++++.+..--..=.+.+|++|-.|.+..+--
T Consensus 572 itAlalsalaeaa~Pygie~fDsVlkpLwkgir~h 606 (1172)
T KOG0213|consen 572 ITALALSALAEAATPYGIEQFDSVLKPLWKGIRQH 606 (1172)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHc
Confidence 99888888877766667788999999999887643
No 61
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.85 E-value=2.5 Score=34.07 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=56.5
Q ss_pred HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHH
Q psy18155 47 RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLN 126 (185)
Q Consensus 47 ~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~ 126 (185)
.-.++.++...-+++..||..|+..+... .+..++-.. .|+.+++....|++..
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~i------------------------l~qGLvnP~--~cvp~lIAL~ts~~~~ 60 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELI------------------------LRQGLVNPK--QCVPTLIALETSPNPS 60 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH------------------------HhcCCCChH--HHHhHhhhhhCCCChH
Confidence 34567778888899999999999999844 333334332 1566777777788888
Q ss_pred HHHHHHHHHHHHhhcChhhHHHh
Q psy18155 127 VRRVALVAFNSAAHNKPSLVIDL 149 (185)
Q Consensus 127 Vr~~A~~~L~~~a~~~p~lv~~~ 149 (185)
+|..|...+.......|+.+...
T Consensus 61 ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 61 IRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999888888877777766543
No 62
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=89.64 E-value=3.8 Score=44.45 Aligned_cols=139 Identities=12% Similarity=0.170 Sum_probs=92.1
Q ss_pred hhHHHHHhhcccCCccchHHHHHHhhcCCCcccccchhh----------hhH-H-----HHhhHHHHHHhccCCChHHHH
Q psy18155 3 NVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQS----------IDP-L-----LRQTIGDFLSALKDSDLNVRR 66 (185)
Q Consensus 3 ~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~----------~d~-~-----L~~~i~~fl~~l~d~d~~vR~ 66 (185)
..++..|..+....-++.++.|.+++.++++..+..+.. .+. . -...++.+...+++++..+++
T Consensus 548 ~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk 627 (2102)
T PLN03200 548 EIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQE 627 (2102)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHH
Confidence 455666666655555566778888887776555532110 110 0 124678888999999999999
Q ss_pred HHHHHHHHhhhcCchhhHHhHHh-HHHHHHHHhhcCCCCCch-------------------H-HH-hhHHHHHHhccCCC
Q psy18155 67 VALVAFNSAAHNKPSLVIDLLDS-VLPQLYAETAVKPQSIDP-------------------L-LR-QTIGDFLSALKDSD 124 (185)
Q Consensus 67 ~al~~ln~~~~~kp~ll~~~l~~-~Lp~L~~~t~~~~~~vr~-------------------~-L~-~~m~~~l~~l~D~d 124 (185)
.|..++....+++++.....++. .+|.|.+..+.....+++ . .. ..+.++...+++.+
T Consensus 628 ~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d 707 (2102)
T PLN03200 628 KAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSS 707 (2102)
T ss_pred HHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC
Confidence 99999977777777766555543 666666666666655533 1 11 12457888888889
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy18155 125 LNVRRVALVAFNSAAHN 141 (185)
Q Consensus 125 ~~Vr~~A~~~L~~~a~~ 141 (185)
.+++..|..+|...+..
T Consensus 708 ~~v~e~Al~ALanLl~~ 724 (2102)
T PLN03200 708 IEVAEQAVCALANLLSD 724 (2102)
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 99999998777776544
No 63
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=89.26 E-value=5.5 Score=34.23 Aligned_cols=71 Identities=23% Similarity=0.247 Sum_probs=46.7
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhhcCCCcccccchhhhhHH--HHhhHHHHHHhcc-CCChHHHHHHHHHHHHh
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPL--LRQTIGDFLSALK-DSDLNVRRVALVAFNSA 75 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~--L~~~i~~fl~~l~-d~d~~vR~~al~~ln~~ 75 (185)
|.-++.-+|..+. .+.+|.|.+.+.++++.+|+++...=.- ...-++.++..+. |++..||+.|..++...
T Consensus 60 r~~aa~~l~~~~~---~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~ 133 (335)
T COG1413 60 RLSAAVALGELGS---EEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALGKL 133 (335)
T ss_pred HHHHHHHHhhhch---HHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc
Confidence 3334444444444 4888888899988888888666531010 2344667777777 78999999887777643
No 64
>KOG0413|consensus
Probab=89.25 E-value=2 Score=43.46 Aligned_cols=115 Identities=23% Similarity=0.260 Sum_probs=74.9
Q ss_pred chhHHHHHhhcccCCc---cchHHHHHHhhc-CCCcccc--------cchhhhhHHHHhhHHHHHHhccCCChHHHHHHH
Q psy18155 2 RNVVAECLGKLTLIDP---SNLLPRLQESLK-SNSALMR--------TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVAL 69 (185)
Q Consensus 2 r~vvae~lg~l~~~~~---~~~l~~L~~~l~-~~~~~~r--------~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al 69 (185)
|.+.---||++|+-+= ..++|.|.+-|+ +....+| |....|--+.+..||.+-..++||+..|||-++
T Consensus 948 ra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ 1027 (1529)
T KOG0413|consen 948 RAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTI 1027 (1529)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHH
Confidence 4444455777777443 468999998887 3344555 555556556788899999999999999999986
Q ss_pred HHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhc
Q psy18155 70 VAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHN 141 (185)
Q Consensus 70 ~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~ 141 (185)
..+. .|.++--.+= +-. .+-+|+.++=|.+++||+.|-.-+.+....
T Consensus 1028 ilL~-------------------rLLq~~~vKw---~G~---Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1028 ILLA-------------------RLLQFGIVKW---NGE---LFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHH-------------------HHHhhhhhhc---chh---hHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 5443 2222211110 111 233555555599999999998777776543
No 65
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=89.14 E-value=2.9 Score=35.96 Aligned_cols=124 Identities=25% Similarity=0.320 Sum_probs=77.3
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhhc-CCCcccccchhhhhHH--HHhhHHHHHHhccCCC------------hHHHH
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESLK-SNSALMRTTPQSIDPL--LRQTIGDFLSALKDSD------------LNVRR 66 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l~-~~~~~~r~~~~~~d~~--L~~~i~~fl~~l~d~d------------~~vR~ 66 (185)
|..++.++|.++.. +.+|.|.+.++ +.+..+|.++...-.. -..-+.+++..++|++ ..+|.
T Consensus 91 r~~a~~aLg~~~~~---~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 91 RDAAADALGELGDP---EAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred HHHHHHHHHccCCh---hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 66777888887765 88999999998 5788888555432221 1223677788888866 25777
Q ss_pred HHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHH--------Hh--hH-HHHHHhccCCCHHHHHHHHHHH
Q psy18155 67 VALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLL--------RQ--TI-GDFLSALKDSDLNVRRVALVAF 135 (185)
Q Consensus 67 ~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L--------~~--~m-~~~l~~l~D~d~~Vr~~A~~~L 135 (185)
.|+..+.... -....+.+.....+....||..- .. .+ ..|...++|++..||..+..++
T Consensus 168 ~a~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 168 AAAEALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred HHHHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 7766654221 12233444444555555555411 11 23 3566788899999999998666
Q ss_pred HHH
Q psy18155 136 NSA 138 (185)
Q Consensus 136 ~~~ 138 (185)
...
T Consensus 238 ~~~ 240 (335)
T COG1413 238 GEI 240 (335)
T ss_pred ccc
Confidence 554
No 66
>KOG1991|consensus
Probab=89.03 E-value=6.1 Score=39.80 Aligned_cols=103 Identities=25% Similarity=0.283 Sum_probs=66.2
Q ss_pred Hhcc-CCChHHHHHHHHHHHHhhhcCchh---hHHhHHhHHHHHHHHhhcCCCCCch-H------------------HHh
Q psy18155 55 SALK-DSDLNVRRVALVAFNSAAHNKPSL---VIDLLDSVLPQLYAETAVKPQSIDP-L------------------LRQ 111 (185)
Q Consensus 55 ~~l~-d~d~~vR~~al~~ln~~~~~kp~l---l~~~l~~~Lp~L~~~t~~~~~~vr~-~------------------L~~ 111 (185)
.++. |+++-||--|..++.+++.+.++. +++|+..+++.|++..+.-....=+ + |..
T Consensus 509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q 588 (1010)
T KOG1991|consen 509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ 588 (1010)
T ss_pred HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH
Confidence 4444 888999998888999999999976 9999999999999988765443311 1 111
Q ss_pred hHH-HHHHhcc-----C-CCHHHHHHHH------HHHHHHhhcChhhHHHhHhhHhhhh
Q psy18155 112 TIG-DFLSALK-----D-SDLNVRRVAL------VAFNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 112 ~m~-~~l~~l~-----D-~d~~Vr~~A~------~~L~~~a~~~p~lv~~~L~~llp~L 157 (185)
++. -|+..++ | .+.+=..+|. .|+.....+.|.++.+.=+.++|.+
T Consensus 589 ~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi 647 (1010)
T KOG1991|consen 589 NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVI 647 (1010)
T ss_pred HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 111 3444443 1 2333333443 3344445788987665556677766
No 67
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.97 E-value=0.72 Score=45.11 Aligned_cols=111 Identities=19% Similarity=0.295 Sum_probs=66.0
Q ss_pred chHHHHHHhhcC----CCcccc-cchhhhhHH-------HHhhHHHHHHhcc-CCChHHHHHHH-------HHHHHhhhc
Q psy18155 19 NLLPRLQESLKS----NSALMR-TTPQSIDPL-------LRQTIGDFLSALK-DSDLNVRRVAL-------VAFNSAAHN 78 (185)
Q Consensus 19 ~~l~~L~~~l~~----~~~~~r-~~~~~~d~~-------L~~~i~~fl~~l~-d~d~~vR~~al-------~~ln~~~~~ 78 (185)
++-|-+.|...+ +++..+ ++...+.++ -....|-|++.+. +|++.+|.-|+ .|||.+
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~--- 968 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT--- 968 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhh---
Confidence 445666676654 344443 444445442 2345788887776 99999999885 455543
Q ss_pred CchhhHHhHHhHHHHHHHHhhcCCCCCch---------HH------HhhHHHHHHhccCCCHHHHHHHHHHHHHHhh
Q psy18155 79 KPSLVIDLLDSVLPQLYAETAVKPQSIDP---------LL------RQTIGDFLSALKDSDLNVRRVALVAFNSAAH 140 (185)
Q Consensus 79 kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~---------~L------~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~ 140 (185)
.|..--.||.+..|....|++ +| .-++|.|..++.|+|.++.-.|-+.|...|.
T Consensus 969 --------~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 969 --------ADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred --------hHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 234445566666666666654 11 1223456666767777777766666666544
No 68
>KOG1820|consensus
Probab=88.35 E-value=4.6 Score=40.14 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=59.7
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchH-----------------
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPL----------------- 108 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~----------------- 108 (185)
-.-..|.|+..+++--..+|-.++.+++.+.. .-+++.+.+.+-..+..+...++.-
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 44567889999999999999999999987754 3344445555544455554444431
Q ss_pred ----HHhhHHHHHHhccCCCHHHHHHHHHHHHHHh
Q psy18155 109 ----LRQTIGDFLSALKDSDLNVRRVALVAFNSAA 139 (185)
Q Consensus 109 ----L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a 139 (185)
+......+...++|.+.+||.+|+.++....
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 1111234556788999999999997777753
No 69
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=88.21 E-value=5.8 Score=32.48 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=58.2
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhc-CchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCC
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHN-KPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSD 124 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~-kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d 124 (185)
..+.+|-|..=++..+.--|=.|...+.-.+.. .++-+.+ +|-..+.++..+++-.|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilP----------------------vlPqLI~plk~AL~tr~ 93 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILP----------------------VLPQLIIPLKRALNTRD 93 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHH----------------------HHHHHHHHHHHHHhCCC
Confidence 567788888777766655666665555432211 1211111 22223457788888889
Q ss_pred HHHHHHHHHHHHHH---hhcChhhHHHhHhhHhhhh
Q psy18155 125 LNVRRVALVAFNSA---AHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 125 ~~Vr~~A~~~L~~~---a~~~p~lv~~~L~~llp~L 157 (185)
.+|...++.+|... ...-...+.||+.+++|.+
T Consensus 94 ~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 94 PEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999887776 4444445779999999998
No 70
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=88.20 E-value=2.9 Score=38.04 Aligned_cols=118 Identities=20% Similarity=0.236 Sum_probs=64.0
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHh-HHHHHHHHhhcCCCCCch------------------H
Q psy18155 48 QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS-VLPQLYAETAVKPQSIDP------------------L 108 (185)
Q Consensus 48 ~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~-~Lp~L~~~t~~~~~~vr~------------------~ 108 (185)
..+|-+.-++...|++|=--|.=++++....--.-+...||. ..+.|.+..+-++..|-+ +
T Consensus 243 qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqv 322 (526)
T COG5064 243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV 322 (526)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceeh
Confidence 344444445555555555555555555444333445555555 455666666666665532 1
Q ss_pred HHhh--HHHHHHhccCCCHHHHHHHHHHHHHH-hhcChhhHHHhHh-hHhhhh-----hhhhhhcch
Q psy18155 109 LRQT--IGDFLSALKDSDLNVRRVALVAFNSA-AHNKPSLVIDLLD-SVLPQL-----YAETAVKKT 166 (185)
Q Consensus 109 L~~~--m~~~l~~l~D~d~~Vr~~A~~~L~~~-a~~~p~lv~~~L~-~llp~L-----y~et~vk~e 166 (185)
+..| +..|...++..-..+|++||-|++.. |-+..+ +...++ .++|+| +.|..+|.|
T Consensus 323 iI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteq-iqavid~nliPpLi~lls~ae~k~kKE 388 (526)
T COG5064 323 IINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQ-IQAVIDANLIPPLIHLLSSAEYKIKKE 388 (526)
T ss_pred heecccHHHHHHHhcChhhhhhhhhheeecccccCCHHH-HHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 1111 23556667666779999999777764 333233 444454 477777 445555444
No 71
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=88.13 E-value=3.8 Score=40.34 Aligned_cols=75 Identities=23% Similarity=0.275 Sum_probs=54.3
Q ss_pred hHHHHHHhhcCCCcccccchhh----h--hHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHh-HHhHHH
Q psy18155 20 LLPRLQESLKSNSALMRTTPQS----I--DPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDL-LDSVLP 92 (185)
Q Consensus 20 ~l~~L~~~l~~~~~~~r~~~~~----~--d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~-l~~~Lp 92 (185)
.++.+++=++++++..|..+-+ + .+++..+++....++.|++.-|||.|..|+...-.-.+.+..+. +..++-
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~ 172 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILK 172 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHH
Confidence 3455666677899999944432 2 22588999999999999999999999988877766666666555 555544
Q ss_pred HH
Q psy18155 93 QL 94 (185)
Q Consensus 93 ~L 94 (185)
.|
T Consensus 173 ~l 174 (757)
T COG5096 173 EL 174 (757)
T ss_pred HH
Confidence 44
No 72
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=88.05 E-value=4.9 Score=43.71 Aligned_cols=123 Identities=12% Similarity=0.093 Sum_probs=76.5
Q ss_pred chHHHHHHhhcCCCcccccc-hhhh-----------hHHH-HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHH
Q psy18155 19 NLLPRLQESLKSNSALMRTT-PQSI-----------DPLL-RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVID 85 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r~~-~~~~-----------d~~L-~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~ 85 (185)
+..+.|..+++..+.++|.. +..+ ..+. ...+|.++.++++++..+|+.|+.++...+...+.....
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~a 483 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWA 483 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34445556666666666622 2111 1111 235888999999999999999998885554444433333
Q ss_pred hHHh-HHHHHHHHhhcCCCCCc------------------hHHH--hhHHHHHHhccCCCHHHHHHHHHHHHHHhhc
Q psy18155 86 LLDS-VLPQLYAETAVKPQSID------------------PLLR--QTIGDFLSALKDSDLNVRRVALVAFNSAAHN 141 (185)
Q Consensus 86 ~l~~-~Lp~L~~~t~~~~~~vr------------------~~L~--~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~ 141 (185)
.++. .+|.|.+..+..+..++ .++. ..+.+++..+++.+.++++.|..+|...++.
T Consensus 484 IieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 484 ITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 3333 56666666554444332 2331 2356888888888999999999888887653
No 73
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=86.24 E-value=1.6 Score=26.21 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.8
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHH
Q psy18155 48 QTIGDFLSALKDSDLNVRRVALVAFNS 74 (185)
Q Consensus 48 ~~i~~fl~~l~d~d~~vR~~al~~ln~ 74 (185)
..||.++.++++++..||+.|+.++..
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~n 38 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGN 38 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 468999999999999999999988853
No 74
>KOG2259|consensus
Probab=86.09 E-value=0.93 Score=43.91 Aligned_cols=103 Identities=22% Similarity=0.337 Sum_probs=59.1
Q ss_pred HHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhH------------HHHHHHHhhcCCCC-CchHHHhhHHHHHH
Q psy18155 52 DFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSV------------LPQLYAETAVKPQS-IDPLLRQTIGDFLS 118 (185)
Q Consensus 52 ~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~------------Lp~L~~~t~~~~~~-vr~~L~~~m~~~l~ 118 (185)
.|+..+.|+-.+||++|+.++-+.+.+.|.--...++=+ |.++|..+.+.... +| ..+|.-|+.
T Consensus 377 A~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~---eeql~~il~ 453 (823)
T KOG2259|consen 377 ALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIR---EEQLRQILE 453 (823)
T ss_pred eeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheec---HHHHHHHHH
Confidence 467788899999999999999999998887433333322 23333333332221 11 124556666
Q ss_pred hccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhh
Q psy18155 119 ALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 119 ~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~L 157 (185)
++.|...+||.+...+|..+-...-..+.-.+..++-.|
T Consensus 454 ~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L 492 (823)
T KOG2259|consen 454 SLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNL 492 (823)
T ss_pred HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 666666666666666665543232233333334444444
No 75
>KOG1243|consensus
Probab=85.02 E-value=2.7 Score=40.75 Aligned_cols=119 Identities=20% Similarity=0.261 Sum_probs=85.9
Q ss_pred chHHHHHHhhcCCCcccc--------cchhhhhH--HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHH
Q psy18155 19 NLLPRLQESLKSNSALMR--------TTPQSIDP--LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD 88 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r--------~~~~~~d~--~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~ 88 (185)
.++|-|.+++++++..+| .....+.+ +.+.+.|.|..-+.|.|..+|-.+|-++...+ |-+=...|+
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La---~kL~~~~Ln 406 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLA---PKLSKRNLN 406 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHH---hhhchhhhc
Confidence 499999999999999888 33444443 35778899999999999999999976665433 333334453
Q ss_pred -hHHHHHHHHhhcCCCCCch-------HHHhhH----------HHHHHhccCCCHHHHHHHHHHHHHHhh
Q psy18155 89 -SVLPQLYAETAVKPQSIDP-------LLRQTI----------GDFLSALKDSDLNVRRVALVAFNSAAH 140 (185)
Q Consensus 89 -~~Lp~L~~~t~~~~~~vr~-------~L~~~m----------~~~l~~l~D~d~~Vr~~A~~~L~~~a~ 140 (185)
++|-.++....|....+|+ +..+++ ..|..++.|+=..=|.++...+.+...
T Consensus 407 ~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 407 GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred HHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 3777787777777777876 223332 266677888888888888888877543
No 76
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.91 E-value=10 Score=32.45 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=33.4
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhh
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLV 83 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll 83 (185)
++..++|..|..+.|.+..+|..++.++..++.+-|...
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 466789999999999999999999999999987666544
No 77
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=84.83 E-value=12 Score=36.13 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=90.4
Q ss_pred chHHHHHHhhcCCCcccc---cchhh-------------hhHHHHhhHHHHH-HhccCCChHHHHHHHHHHHHhhhcCch
Q psy18155 19 NLLPRLQESLKSNSALMR---TTPQS-------------IDPLLRQTIGDFL-SALKDSDLNVRRVALVAFNSAAHNKPS 81 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r---~~~~~-------------~d~~L~~~i~~fl-~~l~d~d~~vR~~al~~ln~~~~~kp~ 81 (185)
+++|.|..+|..++++.- |.++- -|.++++ +-.|+ +.+++++-..|..|+.+|.|..|....
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~ 399 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCE 399 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccH
Confidence 589999999976544333 22221 1223555 44567 899999999999999999999987766
Q ss_pred h-hHHhHHhHHHHHHHHhhcCCCCCch---------------HHHhhH------HHHHHhccCCCHHHHHHHHHH-----
Q psy18155 82 L-VIDLLDSVLPQLYAETAVKPQSIDP---------------LLRQTI------GDFLSALKDSDLNVRRVALVA----- 134 (185)
Q Consensus 82 l-l~~~l~~~Lp~L~~~t~~~~~~vr~---------------~L~~~m------~~~l~~l~D~d~~Vr~~A~~~----- 134 (185)
- +....++.||.+..+-+|..=.|.. .+.|+. ...+.++.| ..-+...++-+
T Consensus 400 ~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv 478 (858)
T COG5215 400 DCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLV 478 (858)
T ss_pred HHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHH
Confidence 4 4566789999999999976655543 222221 234445544 44444444422
Q ss_pred --HHHHhhcChhhHHHhHhhHhhhhhhhhhh
Q psy18155 135 --FNSAAHNKPSLVIDLLDSVLPQLYAETAV 163 (185)
Q Consensus 135 --L~~~a~~~p~lv~~~L~~llp~Ly~et~v 163 (185)
+..+.+..|..+.+....++-.|.+-|+.
T Consensus 479 ~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~ 509 (858)
T COG5215 479 DHIAKAVREVESFLAKFYLAILNALVKGTEL 509 (858)
T ss_pred HhhhhhhccccchhHHHHHHHHHHHHHHHHh
Confidence 22333444555666667777777555543
No 78
>KOG1061|consensus
Probab=84.15 E-value=9.8 Score=37.29 Aligned_cols=125 Identities=25% Similarity=0.301 Sum_probs=78.4
Q ss_pred HhhcccCCccchHHHHHHhh---cCCCcccccchh------hhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcC
Q psy18155 9 LGKLTLIDPSNLLPRLQESL---KSNSALMRTTPQ------SIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNK 79 (185)
Q Consensus 9 lg~l~~~~~~~~l~~L~~~l---~~~~~~~r~~~~------~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~k 79 (185)
++..+...|...+-.+.-.+ +++++..|..+. ..+.+..+.+-++...++|.++-||+.|..|.+.+-|..
T Consensus 73 l~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~ 152 (734)
T KOG1061|consen 73 LMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID 152 (734)
T ss_pred HHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC
Confidence 45555555555554444444 355677773332 344467888888999999999999999998888775544
Q ss_pred chhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcCh-----hhHHHhHhhHh
Q psy18155 80 PSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKP-----SLVIDLLDSVL 154 (185)
Q Consensus 80 p~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p-----~lv~~~L~~ll 154 (185)
+....+ .. ...-....+.|++..|--.|..+|++.....| .+..++.++++
T Consensus 153 ~~~~~~----------------~g--------l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL 208 (734)
T KOG1061|consen 153 PDLVED----------------SG--------LVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLL 208 (734)
T ss_pred hhhccc----------------cc--------hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHH
Confidence 432111 11 11122234447888888888888887655544 34566777777
Q ss_pred hhh
Q psy18155 155 PQL 157 (185)
Q Consensus 155 p~L 157 (185)
..+
T Consensus 209 ~al 211 (734)
T KOG1061|consen 209 EAL 211 (734)
T ss_pred HHH
Confidence 777
No 79
>KOG1020|consensus
Probab=83.95 E-value=10 Score=40.03 Aligned_cols=132 Identities=17% Similarity=0.296 Sum_probs=92.7
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHH-----------
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIG----------- 114 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~----------- 114 (185)
.++.+...+..++.+-..+|..|+-|++..+..-|..+. -.....++-.+..|.+..||+--...+|
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 566677788999999999999999999988776665432 2456777778888888888873222233
Q ss_pred ----HHHHhccCCCHHHHHHHHHHHHHHhhcChhhH--HHhHhhHhhhhhhhhh-hcchhhhhhccCCceeec
Q psy18155 115 ----DFLSALKDSDLNVRRVALVAFNSAAHNKPSLV--IDLLDSVLPQLYAETA-VKKTLIREVEMGPFKHTV 180 (185)
Q Consensus 115 ----~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv--~~~L~~llp~Ly~et~-vk~el~R~vdmgPfkh~v 180 (185)
-+...+.|++.-||+=+.-.+-......|+.. -...-+++-.+-+|.. | +++.+++=++=|+-.+
T Consensus 892 qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I-~kLv~etf~klWF~p~ 963 (1692)
T KOG1020|consen 892 QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNI-KKLVRETFLKLWFTPV 963 (1692)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHH-HHHHHHHHHHHhccCC
Confidence 23357889999999999988888877777742 2334466666666666 5 6666776665555433
No 80
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=83.67 E-value=22 Score=30.55 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=54.4
Q ss_pred HHhhHHHHH-HhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch--------HH-------
Q psy18155 46 LRQTIGDFL-SALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP--------LL------- 109 (185)
Q Consensus 46 L~~~i~~fl-~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~--------~L------- 109 (185)
+..++..++ -++++++..||..|+.|+..+.--....-.+++.-|+..+ ..+++.|+. ++
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~----~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQAL----QKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 344555555 7889999999999999998775444444555544444444 333444432 00
Q ss_pred -----H--------hhHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 110 -----R--------QTIGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 110 -----~--------~~m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
. +.+.-|...+.+++.+++..|+..+.+.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKL 141 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0 1112344566667888999999777775
No 81
>KOG1060|consensus
Probab=83.02 E-value=6 Score=39.26 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=92.2
Q ss_pred CccchHHHHHHhhcCCCcccccchhhhhH-H------HHhh-HHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhH
Q psy18155 16 DPSNLLPRLQESLKSNSALMRTTPQSIDP-L------LRQT-IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLL 87 (185)
Q Consensus 16 ~~~~~l~~L~~~l~~~~~~~r~~~~~~d~-~------L~~~-i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l 87 (185)
+-.++.|++++...+++..++.-+.-|=- | |.-+ |.-|=.+++|||..+|..||.++++.= .+.+
T Consensus 68 dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIR-------vp~I 140 (968)
T KOG1060|consen 68 DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIR-------VPMI 140 (968)
T ss_pred cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc-------hhhH
Confidence 35678888888888888877732221100 0 1111 566778999999999999999987541 1111
Q ss_pred -HhHHHHHHHHhhcCCCCCch-------HH---Hh----hHHH-HHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHh
Q psy18155 88 -DSVLPQLYAETAVKPQSIDP-------LL---RQ----TIGD-FLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD 151 (185)
Q Consensus 88 -~~~Lp~L~~~t~~~~~~vr~-------~L---~~----~m~~-~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~ 151 (185)
+=.|-++-+.++|.+.-||+ +| .| .+.. +...+.|.+.-|--.|.++|-+.+-.+-.++.++..
T Consensus 141 aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyr 220 (968)
T KOG1060|consen 141 APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYR 220 (968)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHH
Confidence 12455666667777777765 11 11 1222 224667888888888888888888888888888888
Q ss_pred hHhhhhhhhhhh
Q psy18155 152 SVLPQLYAETAV 163 (185)
Q Consensus 152 ~llp~Ly~et~v 163 (185)
++.-.|.+=++-
T Consensus 221 klC~ll~dvdeW 232 (968)
T KOG1060|consen 221 KLCRLLPDVDEW 232 (968)
T ss_pred HHHhhccchhhh
Confidence 888777655554
No 82
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.97 E-value=9.1 Score=37.09 Aligned_cols=115 Identities=23% Similarity=0.259 Sum_probs=71.5
Q ss_pred HHHhhcCCCcccc-----------cchhhhhH-HHHhhHHHHHHhccCCChHHHHHHHHHHHHh----------------
Q psy18155 24 LQESLKSNSALMR-----------TTPQSIDP-LLRQTIGDFLSALKDSDLNVRRVALVAFNSA---------------- 75 (185)
Q Consensus 24 L~~~l~~~~~~~r-----------~~~~~~d~-~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~---------------- 75 (185)
+..-++|++..+| |..+.+|+ .-+.++-++..-+=|-..-||+-|+.|+..+
T Consensus 96 ~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~ 175 (885)
T COG5218 96 LLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLK 175 (885)
T ss_pred HHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 3344456666666 77888888 4466666777777777777777777777655
Q ss_pred --hhcCchhhHHh-------H-HhHHHHHHHHhhcCCCCCchHH----HhhHHH------------HHHhccCCCHHHHH
Q psy18155 76 --AHNKPSLVIDL-------L-DSVLPQLYAETAVKPQSIDPLL----RQTIGD------------FLSALKDSDLNVRR 129 (185)
Q Consensus 76 --~~~kp~ll~~~-------l-~~~Lp~L~~~t~~~~~~vr~~L----~~~m~~------------~l~~l~D~d~~Vr~ 129 (185)
++|-|+.=.-. . ++-.|.+.+++.|-+...|+.. -|-||. +--++.|-+..||.
T Consensus 176 ~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~ 255 (885)
T COG5218 176 DIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKG 255 (885)
T ss_pred HHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHHH
Confidence 33444321100 0 1245777777777766665522 233442 22478888999999
Q ss_pred HHHHHHHHH
Q psy18155 130 VALVAFNSA 138 (185)
Q Consensus 130 ~A~~~L~~~ 138 (185)
+|.-++..+
T Consensus 256 a~~d~ia~~ 264 (885)
T COG5218 256 ALVDAIASA 264 (885)
T ss_pred HHHHHHHHH
Confidence 998777765
No 83
>KOG2025|consensus
Probab=82.88 E-value=3.6 Score=40.36 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=66.0
Q ss_pred chHHHHHHhhcCCCcccccchhh-hhHH-------HHhhHHHHHHhcc-CCChHHHHHHHHHHHHhhhcCchhhHHhHHh
Q psy18155 19 NLLPRLQESLKSNSALMRTTPQS-IDPL-------LRQTIGDFLSALK-DSDLNVRRVALVAFNSAAHNKPSLVIDLLDS 89 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r~~~~~-~d~~-------L~~~i~~fl~~l~-d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~ 89 (185)
.+.-.+..++.+-.|.+|-.++- +-.+ =.+.+.-|...++ ||+.+|||+||+++..- +.
T Consensus 126 ~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vd------------ns 193 (892)
T KOG2025|consen 126 KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISVD------------NS 193 (892)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhccC------------cc
Confidence 44455556666667777722221 1110 0123334455554 99999999999887522 23
Q ss_pred HHHHHHHHhhcCCCCCchHH----HhhHH-----------HHHHhccCCCHHHHHHHHHHHHH
Q psy18155 90 VLPQLYAETAVKPQSIDPLL----RQTIG-----------DFLSALKDSDLNVRRVALVAFNS 137 (185)
Q Consensus 90 ~Lp~L~~~t~~~~~~vr~~L----~~~m~-----------~~l~~l~D~d~~Vr~~A~~~L~~ 137 (185)
=+|.+.+++.|-++.+|+.. .|-|. -+-.+++|-+..||.++.-++..
T Consensus 194 Tlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 194 TLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred cchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 46788888999888887622 22221 12258889999999999877655
No 84
>KOG1248|consensus
Probab=82.54 E-value=13 Score=38.30 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=77.1
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhh--------hcCchhhHHhHHhHHHHHHHHhhcCCCCCch--------HH
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAA--------HNKPSLVIDLLDSVLPQLYAETAVKPQSIDP--------LL 109 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~--------~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~--------~L 109 (185)
+-..||..+-++++.|-+-||.|..|+-... .+.| ..+.++.|++-||.-+.-++..+.. ++
T Consensus 736 i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 736 IPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 4556788777779999999999999985444 2223 3567888999998885555444321 11
Q ss_pred ------------HhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhh-HHHhHhhHhhhh
Q psy18155 110 ------------RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSL-VIDLLDSVLPQL 157 (185)
Q Consensus 110 ------------~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~l-v~~~L~~llp~L 157 (185)
...+.-.-..+.....+|+++|...+......-|.. +.+++++++|.+
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sl 874 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSL 874 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHH
Confidence 111112223556678999999998888888887874 578999999988
No 85
>KOG1240|consensus
Probab=82.08 E-value=15 Score=38.20 Aligned_cols=149 Identities=23% Similarity=0.244 Sum_probs=82.7
Q ss_pred CchhHHHHHhhcccCCcc--chHHHHHHh--hcCCCcccccchhhhhH---HHHhhHHH-HHHhccCCChHHHHHHHHHH
Q psy18155 1 TRNVVAECLGKLTLIDPS--NLLPRLQES--LKSNSALMRTTPQSIDP---LLRQTIGD-FLSALKDSDLNVRRVALVAF 72 (185)
Q Consensus 1 ~r~vvae~lg~l~~~~~~--~~l~~L~~~--l~~~~~~~r~~~~~~d~---~L~~~i~~-fl~~l~d~d~~vR~~al~~l 72 (185)
+|-..|+||+.|+..... ++-.++... +.+++...-.... ++. .|-..|.+ +.+++.|+++.|||.-+..+
T Consensus 524 vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~-~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i 602 (1431)
T KOG1240|consen 524 VRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQN-YNTELQALHHTVEQMVSSLLSDSPPIVKRALLESI 602 (1431)
T ss_pred ehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccc-cchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 577889999999875432 222222221 2233221111111 222 24444555 44888899999999876554
Q ss_pred HH----hhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchH----------------HHhhHH-HHHHhccCCCHHHHHHH
Q psy18155 73 NS----AAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPL----------------LRQTIG-DFLSALKDSDLNVRRVA 131 (185)
Q Consensus 73 n~----~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~----------------L~~~m~-~~l~~l~D~d~~Vr~~A 131 (185)
.- |...|.+ |-+|+.|..-.+|++...|-. +...|- .+..++.|..+.|=--|
T Consensus 603 ~~LC~FFGk~ksN------D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~a 676 (1431)
T KOG1240|consen 603 IPLCVFFGKEKSN------DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSA 676 (1431)
T ss_pred HHHHHHhhhcccc------cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHH
Confidence 21 2233332 335666666667775554431 223333 45568888777776666
Q ss_pred HHH---HHHHhh-cChhhHHHhHhhHhhhh
Q psy18155 132 LVA---FNSAAH-NKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 132 ~~~---L~~~a~-~~p~lv~~~L~~llp~L 157 (185)
+.. |.+..+ .||. +.+.++.++|.|
T Consensus 677 L~~ls~Lik~~ll~K~~-v~~i~~~v~PlL 705 (1431)
T KOG1240|consen 677 LGSLSILIKLGLLRKPA-VKDILQDVLPLL 705 (1431)
T ss_pred HHHHHHHHHhcccchHH-HHHHHHhhhhhe
Confidence 544 444333 4566 778888888887
No 86
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=81.21 E-value=11 Score=29.69 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=61.2
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhhcC-----CCccccc-------chhhhhH-HHHhhHHHHHHhccCCChHHHHH-
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESLKS-----NSALMRT-------TPQSIDP-LLRQTIGDFLSALKDSDLNVRRV- 67 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l~~-----~~~~~r~-------~~~~~d~-~L~~~i~~fl~~l~d~d~~vR~~- 67 (185)
|.=+--|+|.+|..||-..= ......++ .+....+ .....|+ +....+..++..++|+.+.....
T Consensus 28 R~E~lr~lGilGALDP~~~k-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~ 106 (160)
T PF11865_consen 28 RREALRVLGILGALDPYKHK-SIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVINALMRILRDPSLSSHHTA 106 (160)
T ss_pred HHHHHHHhhhccccCcHHHh-cccccCCccccccccccchhhHHhhccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55567799999999986552 22222211 0111111 1113555 56777888889999998775555
Q ss_pred HHHHHHHhh-hcCchhhHHhHHhHHHHHHHHhhcCCCCCchH
Q psy18155 68 ALVAFNSAA-HNKPSLVIDLLDSVLPQLYAETAVKPQSIDPL 108 (185)
Q Consensus 68 al~~ln~~~-~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~ 108 (185)
++.++.... .-.... .+.+++++|.+.......+...++.
T Consensus 107 vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~ 147 (160)
T PF11865_consen 107 VVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREF 147 (160)
T ss_pred HHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHH
Confidence 444443222 222222 7888888888888777555444444
No 87
>KOG1240|consensus
Probab=81.19 E-value=6.2 Score=40.80 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=48.5
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhh---hcCchhhHHhHHh-HHHHHHHHhhc-CCCCCchHHHhhH
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAA---HNKPSLVIDLLDS-VLPQLYAETAV-KPQSIDPLLRQTI 113 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~---~~kp~ll~~~l~~-~Lp~L~~~t~~-~~~~vr~~L~~~m 113 (185)
.|+-++|=|+.++.|++.+||..|+.|+.... .-.|..=.....+ ++|.|-....| ..+-||-.-+.++
T Consensus 459 ~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnl 532 (1431)
T KOG1240|consen 459 KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNL 532 (1431)
T ss_pred HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhH
Confidence 46667888999999999999999999997653 3344433333333 67888888888 5555665444444
No 88
>KOG0946|consensus
Probab=80.67 E-value=5.8 Score=39.34 Aligned_cols=74 Identities=24% Similarity=0.399 Sum_probs=54.7
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHH--HHHHhccCCCHHH
Q psy18155 50 IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIG--DFLSALKDSDLNV 127 (185)
Q Consensus 50 i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~--~~l~~l~D~d~~V 127 (185)
|--.++++..-|..||+.|+..+.+.+.++|-=+++. ++...|| .++.-+.|..+.|
T Consensus 124 I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~---------------------ll~~P~gIS~lmdlL~DsrE~I 182 (970)
T KOG0946|consen 124 ITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDA---------------------LLVSPMGISKLMDLLRDSREPI 182 (970)
T ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHH---------------------HHHCchhHHHHHHHHhhhhhhh
Confidence 4456688899999999999999999988888533333 2222343 6777777888888
Q ss_pred HHHHHHHHHHHhhcChh
Q psy18155 128 RRVALVAFNSAAHNKPS 144 (185)
Q Consensus 128 r~~A~~~L~~~a~~~p~ 144 (185)
|-+|.++|.+.....++
T Consensus 183 RNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 183 RNEAILLLSELVKDNSS 199 (970)
T ss_pred chhHHHHHHHHHccCch
Confidence 88888888887766666
No 89
>KOG1949|consensus
Probab=80.24 E-value=20 Score=35.54 Aligned_cols=116 Identities=22% Similarity=0.311 Sum_probs=72.5
Q ss_pred HHHHHhhcCCCcccc-----------------cchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhh-----hcC
Q psy18155 22 PRLQESLKSNSALMR-----------------TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAA-----HNK 79 (185)
Q Consensus 22 ~~L~~~l~~~~~~~r-----------------~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~-----~~k 79 (185)
|-|-..|+.++-.+| .++..+|+.+..-.--+..++.|+-+.||..|+.-+.-+. -.-
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 444455666666666 4456677777666666778999999999999976554332 223
Q ss_pred chhhHHhHHhHHHHHHHHhhcCCCCCch-----------------HHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhh
Q psy18155 80 PSLVIDLLDSVLPQLYAETAVKPQSIDP-----------------LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAH 140 (185)
Q Consensus 80 p~ll~~~l~~~Lp~L~~~t~~~~~~vr~-----------------~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~ 140 (185)
|..+.+.|..+.--+ +.+....||- .|.-.+...-|++.|..+-||.+++.+|...-.
T Consensus 257 ~~i~~~ll~kI~d~~---a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 257 PTILIDLLKKITDEL---AFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHHHh---hhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 444555555554444 3444456653 111112233378889999999999987777533
No 90
>KOG1248|consensus
Probab=79.40 E-value=6.8 Score=40.16 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=52.9
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCch-hhHHhHHhHHHHHHHHhhcCCCCCchH
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS-LVIDLLDSVLPQLYAETAVKPQSIDPL 108 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~-ll~~~l~~~Lp~L~~~t~~~~~~vr~~ 108 (185)
+..+|--.=.+|....++||++|+..+-.++...|. .+..|++++||.++..+.+...-+|.+
T Consensus 825 l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~K 888 (1176)
T KOG1248|consen 825 LEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKK 888 (1176)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHH
Confidence 555555444788899999999999999999999998 568999999999999999877666654
No 91
>KOG0211|consensus
Probab=78.85 E-value=16 Score=36.13 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=36.1
Q ss_pred HhhcccCCcc--chHHHHHHhhcCCCcccc----cchhhhhHH------HHhhHHHHHHhccCCChHHHHHHHHHH
Q psy18155 9 LGKLTLIDPS--NLLPRLQESLKSNSALMR----TTPQSIDPL------LRQTIGDFLSALKDSDLNVRRVALVAF 72 (185)
Q Consensus 9 lg~l~~~~~~--~~l~~L~~~l~~~~~~~r----~~~~~~d~~------L~~~i~~fl~~l~d~d~~vR~~al~~l 72 (185)
.-++| .+|. +.+|++..+..+++-..| ++...+..+ -..++|.|..+.+|+.++||-.+.-.+
T Consensus 546 ~~~~G-~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L 620 (759)
T KOG0211|consen 546 VETFG-SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHL 620 (759)
T ss_pred HHHhC-cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHH
Confidence 34455 6674 666777766666555555 222223222 345667777777777777776554333
No 92
>KOG0211|consensus
Probab=78.04 E-value=6.4 Score=38.83 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=80.4
Q ss_pred chHHHHHHhhcCCCcccccchh----------hhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCc-hhhHHhH
Q psy18155 19 NLLPRLQESLKSNSALMRTTPQ----------SIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKP-SLVIDLL 87 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r~~~~----------~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp-~ll~~~l 87 (185)
.++|.++.+..+++.-+|.... ..+.-+....|-|++.++|.++.||-...-.+....+.+. ..+..+-
T Consensus 398 ~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s 477 (759)
T KOG0211|consen 398 SILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVS 477 (759)
T ss_pred hhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhh
Confidence 5679999999888887772211 1222356778899999999999999988755555544444 4566667
Q ss_pred HhHHHHHHHHhhcCCCCCchHHHhhH----------------H-HHHHhccCCCHHHHHHHHHHH
Q psy18155 88 DSVLPQLYAETAVKPQSIDPLLRQTI----------------G-DFLSALKDSDLNVRRVALVAF 135 (185)
Q Consensus 88 ~~~Lp~L~~~t~~~~~~vr~~L~~~m----------------~-~~l~~l~D~d~~Vr~~A~~~L 135 (185)
++.||++-..+.+....+|..+..+| + .+...+.|-..+||..|...+
T Consensus 478 ~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l 542 (759)
T KOG0211|consen 478 NSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNL 542 (759)
T ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 88999999999998777765332222 1 233456566778888886333
No 93
>KOG1241|consensus
Probab=77.67 E-value=53 Score=32.66 Aligned_cols=140 Identities=19% Similarity=0.272 Sum_probs=83.2
Q ss_pred chHHHHHHhhcCCCcccccchh-----hhhH----HHHhh----HHHHHHhccCCChHHHHHHHHHHHHhhhcCchhh--
Q psy18155 19 NLLPRLQESLKSNSALMRTTPQ-----SIDP----LLRQT----IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLV-- 83 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r~~~~-----~~d~----~L~~~----i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll-- 83 (185)
-++|-+.+.+++|+-.-|+.+. .++. -|.++ +|..+.++.|+...||+.|=-||.-.+-.-|..+
T Consensus 364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhccc
Confidence 6667777777777655553332 0111 14444 5566688889999999888666655443333322
Q ss_pred HHhHHhHHHHHHHHhhcCCCC--------------------------Cch-HHHhhHHHHHHhcc--C-CCHHHHHHHHH
Q psy18155 84 IDLLDSVLPQLYAETAVKPQS--------------------------IDP-LLRQTIGDFLSALK--D-SDLNVRRVALV 133 (185)
Q Consensus 84 ~~~l~~~Lp~L~~~t~~~~~~--------------------------vr~-~L~~~m~~~l~~l~--D-~d~~Vr~~A~~ 133 (185)
..++...++.+.+-..|.+-- ..+ .-.+.++..++... | .+-..|.+||.
T Consensus 444 ~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYe 523 (859)
T KOG1241|consen 444 QELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYE 523 (859)
T ss_pred HhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHH
Confidence 334444555554444444321 111 22223344554442 2 45679999999
Q ss_pred HHHHHhhcChhhHHHhHhhHhhhhh
Q psy18155 134 AFNSAAHNKPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 134 ~L~~~a~~~p~lv~~~L~~llp~Ly 158 (185)
+|.+...+.|.-+.+.+-++.+.+.
T Consensus 524 ALmElIk~st~~vy~~v~~~~l~il 548 (859)
T KOG1241|consen 524 ALMELIKNSTDDVYPMVQKLTLVIL 548 (859)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 9999999999987777666666553
No 94
>KOG1059|consensus
Probab=77.61 E-value=11 Score=37.09 Aligned_cols=72 Identities=24% Similarity=0.328 Sum_probs=55.8
Q ss_pred HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHH
Q psy18155 47 RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLN 126 (185)
Q Consensus 47 ~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~ 126 (185)
+.+-++.++++++.-+-||..|+..+--.---.| +-|+|++..+...+.|+|..
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP--------------------------eAlr~~FprL~EkLeDpDp~ 196 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP--------------------------EALRPCFPRLVEKLEDPDPS 196 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh--------------------------HhHhhhHHHHHHhccCCCch
Confidence 4555677788888888888888766542211111 24788999999999999999
Q ss_pred HHHHHHHHHHHHhhcChh
Q psy18155 127 VRRVALVAFNSAAHNKPS 144 (185)
Q Consensus 127 Vr~~A~~~L~~~a~~~p~ 144 (185)
|--+|...+.+.|...|.
T Consensus 197 V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 197 VVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHHHHHHHHHhhCCc
Confidence 999999999999987777
No 95
>KOG1525|consensus
Probab=77.30 E-value=15 Score=38.41 Aligned_cols=118 Identities=17% Similarity=0.231 Sum_probs=81.4
Q ss_pred chHHHHHHhhcCCCcccccchhhhhH------------HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHh
Q psy18155 19 NLLPRLQESLKSNSALMRTTPQSIDP------------LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDL 86 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r~~~~~~d~------------~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~ 86 (185)
.++|+|..-|.+++...|--+..+-. --.++...||..+.|-+..||-..+.+...+.-+.|....+.
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~ 338 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKAS 338 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHH
Confidence 56788888888888888822221111 123556789999999999999999999999988888755443
Q ss_pred HHhHHHHHHHHhhcCCCCCch--------------HHHh-hHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 87 LDSVLPQLYAETAVKPQSIDP--------------LLRQ-TIGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 87 l~~~Lp~L~~~t~~~~~~vr~--------------~L~~-~m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
- .+-++=....|..+.||+ .+.+ .|+.+.+.+.|.-..||+.|...|...
T Consensus 339 ~--~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~Laql 403 (1266)
T KOG1525|consen 339 T--ILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQL 403 (1266)
T ss_pred H--HHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2 223333344555555554 2222 456777888999999999999777765
No 96
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=77.17 E-value=3.5 Score=33.57 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhhc-CchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 63 NVRRVALVAFNSAAHN-KPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 63 ~vR~~al~~ln~~~~~-kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
+||..|+.|+.+.+.+ .|-.+..+...|+|--+.... ..-.++ +.-.+.|.+.-||.+|+.++.+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~---~~~~sL-------lt~il~Dp~~kvR~aA~~~l~~l 67 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGR---PATPSL-------LTCILKDPSPKVRAAAASALAAL 67 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCC---CCCcch-------hHHHHcCCchhHHHHHHHHHHHH
Confidence 5899999999999988 888888888888886611111 111111 12245688999999998666554
No 97
>KOG1517|consensus
Probab=76.82 E-value=23 Score=36.54 Aligned_cols=67 Identities=22% Similarity=0.217 Sum_probs=42.7
Q ss_pred hhHHHHHhhcccCCccchHHHHHHhhc---CCCcccc-----cchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHH
Q psy18155 3 NVVAECLGKLTLIDPSNLLPRLQESLK---SNSALMR-----TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNS 74 (185)
Q Consensus 3 ~vvae~lg~l~~~~~~~~l~~L~~~l~---~~~~~~r-----~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~ 74 (185)
|+++-|++.+.-..=|=+.+=+.=+|+ ++-..+| +.++ -+++..+.|+-++||.+|+.+|.+
T Consensus 599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah----------ekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH----------EKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH----------HHHHHHhcCccHHHHHHHHHHHHH
Confidence 677888888776411112222222222 3333444 4444 355689999999999999999999
Q ss_pred hhhcC
Q psy18155 75 AAHNK 79 (185)
Q Consensus 75 ~~~~k 79 (185)
|+.|.
T Consensus 669 fl~~~ 673 (1387)
T KOG1517|consen 669 FLSNG 673 (1387)
T ss_pred Hhccc
Confidence 98875
No 98
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=76.24 E-value=20 Score=25.82 Aligned_cols=38 Identities=32% Similarity=0.380 Sum_probs=31.4
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhh
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLV 83 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll 83 (185)
+..++.-|++.++|+|+-|=-.|+.++.+.+...|.-+
T Consensus 41 ~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v 78 (92)
T PF10363_consen 41 IPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence 34556678899999999999999999998888777633
No 99
>KOG2933|consensus
Probab=75.88 E-value=14 Score=32.96 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=60.4
Q ss_pred cchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch
Q psy18155 37 TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP 107 (185)
Q Consensus 37 ~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~ 107 (185)
-.+..++..|...|......++++..-|-|.|..|+.....+.-..+.+-+|..+-.|...++.+.-+||+
T Consensus 118 fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvre 188 (334)
T KOG2933|consen 118 FHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVRE 188 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 33445555677778888899999999999999999999988888888889999999999999988888865
No 100
>KOG1062|consensus
Probab=74.97 E-value=12 Score=37.06 Aligned_cols=75 Identities=28% Similarity=0.332 Sum_probs=46.7
Q ss_pred HhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHH
Q psy18155 55 SALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVA 134 (185)
Q Consensus 55 ~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~ 134 (185)
-++.+.|-++|=+||.++.-.++..|+++..|=. -+++|++|.|.-+||-|+..
T Consensus 320 kFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~--------------------------tIleCL~DpD~SIkrralEL 373 (866)
T KOG1062|consen 320 KFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS--------------------------TILECLKDPDVSIKRRALEL 373 (866)
T ss_pred HHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH--------------------------HHHHHhcCCcHHHHHHHHHH
Confidence 4556777888888888888777777776665532 34566666666677766654
Q ss_pred HHHHhhcChhhHHHhHhhHhhhh
Q psy18155 135 FNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 135 L~~~a~~~p~lv~~~L~~llp~L 157 (185)
.... -|.-+ |+...++++..|
T Consensus 374 s~~l-vn~~N-v~~mv~eLl~fL 394 (866)
T KOG1062|consen 374 SYAL-VNESN-VRVMVKELLEFL 394 (866)
T ss_pred HHHH-hcccc-HHHHHHHHHHHH
Confidence 4443 22233 555555555555
No 101
>KOG1949|consensus
Probab=74.86 E-value=17 Score=35.94 Aligned_cols=118 Identities=23% Similarity=0.334 Sum_probs=83.0
Q ss_pred chhhhhHHHHhhHHHHH-HhccCCChHHHHHHHHHH-HHhhhcCchhhHHhHHhHHH----HHHHHhhcCCCCCch----
Q psy18155 38 TPQSIDPLLRQTIGDFL-SALKDSDLNVRRVALVAF-NSAAHNKPSLVIDLLDSVLP----QLYAETAVKPQSIDP---- 107 (185)
Q Consensus 38 ~~~~~d~~L~~~i~~fl-~~l~d~d~~vR~~al~~l-n~~~~~kp~ll~~~l~~~Lp----~L~~~t~~~~~~vr~---- 107 (185)
+.+..|++|--+..++| ..++-+|..||..|...| +.+=-..|.+-.+-+|.++. .||...+++-..||.
T Consensus 163 ~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~ 242 (1005)
T KOG1949|consen 163 VRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAIL 242 (1005)
T ss_pred HhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 33445555555555555 889999999999886554 77777888888888888875 577788888888875
Q ss_pred ----------------HHHhhHHHHHHhc-cCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhh
Q psy18155 108 ----------------LLRQTIGDFLSAL-KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 108 ----------------~L~~~m~~~l~~l-~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~L 157 (185)
.+...|+++..-+ .|.--+||...+.-|+..+.| |. -.+.|..++|.|
T Consensus 243 gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~-sh~~le~~Lpal 307 (1005)
T KOG1949|consen 243 GVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PL-SHPLLEQLLPAL 307 (1005)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-cc-chhHHHHHHHhc
Confidence 3333455555432 356668999998777777666 44 347777888877
No 102
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=74.64 E-value=20 Score=30.81 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=68.0
Q ss_pred CchhHHHHHhhcccCCc---cchHHHHHHhhcCCCcccc--------cchhhh-----hHH--------HHhhHHHHHHh
Q psy18155 1 TRNVVAECLGKLTLIDP---SNLLPRLQESLKSNSALMR--------TTPQSI-----DPL--------LRQTIGDFLSA 56 (185)
Q Consensus 1 ~r~vvae~lg~l~~~~~---~~~l~~L~~~l~~~~~~~r--------~~~~~~-----d~~--------L~~~i~~fl~~ 56 (185)
+|...-+|+|.+++.+- .+.++.+...++..+..++ |....+ |.. -..++.-|...
T Consensus 43 vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~ 122 (298)
T PF12719_consen 43 VRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKF 122 (298)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHH
Confidence 48889999999999887 4667777777755555555 111111 110 12333345588
Q ss_pred ccCCChHHHHHHHHHHHHhh-hcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHH
Q psy18155 57 LKDSDLNVRRVALVAFNSAA-HNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLS 118 (185)
Q Consensus 57 l~d~d~~vR~~al~~ln~~~-~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~ 118 (185)
+.+.+.++|..|...+.-.. +++-..-...+..++-.-|.-.+.+.. .|+.++++|+.
T Consensus 123 l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~----~LrQ~L~~Ffp 181 (298)
T PF12719_consen 123 LDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQ----RLRQCLSVFFP 181 (298)
T ss_pred HhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcH----HHHHHHHHHHH
Confidence 88889999999988885443 222222233344444444544443333 57777887774
No 103
>KOG4224|consensus
Probab=74.61 E-value=17 Score=33.41 Aligned_cols=54 Identities=26% Similarity=0.303 Sum_probs=39.1
Q ss_pred chHHHHHHhhcCCCcccc---cchh---hhhH----HHH----hhHHHHHHhccCCChHHHHHHHHHH
Q psy18155 19 NLLPRLQESLKSNSALMR---TTPQ---SIDP----LLR----QTIGDFLSALKDSDLNVRRVALVAF 72 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r---~~~~---~~d~----~L~----~~i~~fl~~l~d~d~~vR~~al~~l 72 (185)
-.+|-|++++++.++++| .++. ..|. .|. .+||+++++++|++.+|+..|-.++
T Consensus 208 G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lAL 275 (550)
T KOG4224|consen 208 GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLAL 275 (550)
T ss_pred CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 357999999999999998 1111 1122 132 3789999999999999998875555
No 104
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=74.21 E-value=6.3 Score=22.68 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.7
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHH
Q psy18155 49 TIGDFLSALKDSDLNVRRVALVAFN 73 (185)
Q Consensus 49 ~i~~fl~~l~d~d~~vR~~al~~ln 73 (185)
.|+.++.++++++.++++.|+.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~ 37 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALS 37 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5788888999999999999988875
No 105
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=73.93 E-value=9.9 Score=31.13 Aligned_cols=50 Identities=24% Similarity=0.208 Sum_probs=38.8
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhh---hcCchhhHHhHHhHHHHHH
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAA---HNKPSLVIDLLDSVLPQLY 95 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~---~~kp~ll~~~l~~~Lp~L~ 95 (185)
+-.+|+++-++++..|..|...+|.++...+ ..-...+.+++.++||.+=
T Consensus 78 lPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 78 LPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 5556667779999999999999999998773 3334567888888888764
No 106
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=73.21 E-value=38 Score=25.63 Aligned_cols=82 Identities=15% Similarity=0.068 Sum_probs=53.8
Q ss_pred HHHHhhccc-----CCccchHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCc
Q psy18155 6 AECLGKLTL-----IDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKP 80 (185)
Q Consensus 6 ae~lg~l~~-----~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp 80 (185)
++++.+.+- .+| .++.++.+++.+.+...+++++.+- .-|+++++++...||..+-+.+.|-.
T Consensus 2 ~~~I~kATs~~~~~~D~-~~il~icd~I~~~~~~~k~a~raL~-----------krl~~~n~~vql~AL~lLd~~vkNcg 69 (133)
T cd03561 2 TSLIERATSPSLEEPDW-ALNLELCDLINLKPNGPKEAARAIR-----------KKIKYGNPHVQLLALTLLELLVKNCG 69 (133)
T ss_pred hHHHHHHcCcccCCccH-HHHHHHHHHHhCCCCCHHHHHHHHH-----------HHHcCCCHHHHHHHHHHHHHHHHhCC
Confidence 344554444 455 4556788888777666666666332 56778999999999999999988876
Q ss_pred hhhHHhHHh--HHHHHHHHhh
Q psy18155 81 SLVIDLLDS--VLPQLYAETA 99 (185)
Q Consensus 81 ~ll~~~l~~--~Lp~L~~~t~ 99 (185)
..+...+.+ ||-.|.+...
T Consensus 70 ~~f~~~i~s~~fl~~l~~l~~ 90 (133)
T cd03561 70 KPFHLQVADKEFLLELVKIAK 90 (133)
T ss_pred hHHHHHHhhHHHHHHHHHHhC
Confidence 655444422 4444444443
No 107
>KOG0414|consensus
Probab=72.88 E-value=8.4 Score=39.60 Aligned_cols=72 Identities=25% Similarity=0.333 Sum_probs=46.3
Q ss_pred hHHHHHhhcccCCc---cchHHHHHHhhc-CCCcccc--------cchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHH
Q psy18155 4 VVAECLGKLTLIDP---SNLLPRLQESLK-SNSALMR--------TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVA 71 (185)
Q Consensus 4 vvae~lg~l~~~~~---~~~l~~L~~~l~-~~~~~~r--------~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ 71 (185)
..+-|+||+..+.. ..-+|.|...++ +++|.+| |-+..+-..+++.-+-|...++|++..||+-|+.+
T Consensus 942 AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta~lv 1021 (1251)
T KOG0414|consen 942 AATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTALLV 1021 (1251)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHHHHHHHH
Confidence 34557777777665 477788888876 7788777 33333333345555556677777777777777666
Q ss_pred HHHh
Q psy18155 72 FNSA 75 (185)
Q Consensus 72 ln~~ 75 (185)
++..
T Consensus 1022 lshL 1025 (1251)
T KOG0414|consen 1022 LSHL 1025 (1251)
T ss_pred HHHH
Confidence 6544
No 108
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=72.29 E-value=15 Score=29.51 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=17.5
Q ss_pred hcccCCccchHHHHHHhhcCCCcccccchh
Q psy18155 11 KLTLIDPSNLLPRLQESLKSNSALMRTTPQ 40 (185)
Q Consensus 11 ~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~ 40 (185)
+.|+.+|.+++|.|..+..|+++.+|..+.
T Consensus 37 ~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~ 66 (187)
T PF12830_consen 37 RQGLVNPKQCVPTLIALETSPNPSIRSRAY 66 (187)
T ss_pred hcCCCChHHHHhHhhhhhCCCChHHHHHHH
Confidence 456666666666666666666555554443
No 109
>KOG2956|consensus
Probab=72.25 E-value=35 Score=32.08 Aligned_cols=110 Identities=13% Similarity=0.198 Sum_probs=80.1
Q ss_pred HHhhHHHHHHhccC-CChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch--------HHHhhHH--
Q psy18155 46 LRQTIGDFLSALKD-SDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP--------LLRQTIG-- 114 (185)
Q Consensus 46 L~~~i~~fl~~l~d-~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~--------~L~~~m~-- 114 (185)
.+.++-..++-++| .+..+|..||..+.-+..++|.-+.+.-.--...+.+.+.+....|-+ .|.++.+
T Consensus 327 f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 327 FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh
Confidence 33444455677888 799999999999999999999999999888888888888888776532 3333322
Q ss_pred ------HHHHhccCCCHHHHHHHHHHHHHHhh-cChhhHHHhHhhHhhhhh
Q psy18155 115 ------DFLSALKDSDLNVRRVALVAFNSAAH-NKPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 115 ------~~l~~l~D~d~~Vr~~A~~~L~~~a~-~~p~lv~~~L~~llp~Ly 158 (185)
+++.. .|+....++.-|+-+... ..-..+.+.++.++|.+.
T Consensus 407 ~I~~i~~~Ilt---~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 407 CIVNISPLILT---ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHHHhhHHhc---CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 33333 566677777767777543 444557788999999993
No 110
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=72.00 E-value=5 Score=32.38 Aligned_cols=66 Identities=21% Similarity=0.171 Sum_probs=37.2
Q ss_pred cchHHHHHHhhcCCCcccc---------cchhhhhHHHHhhHHHHHHhcc--CCChHHHHHHHHHHHHhhhcCchhhHHh
Q psy18155 18 SNLLPRLQESLKSNSALMR---------TTPQSIDPLLRQTIGDFLSALK--DSDLNVRRVALVAFNSAAHNKPSLVIDL 86 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~~~r---------~~~~~~d~~L~~~i~~fl~~l~--d~d~~vR~~al~~ln~~~~~kp~ll~~~ 86 (185)
|+.+|.+....+-.++... |++...+..| +++. =+|..||+.|+.+++.+ .++-+...
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aL--------eLL~~~f~d~~VR~yAV~~L~~~---sd~eL~~y 106 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQAL--------ELLDCNFPDEHVREFAVRCLEKL---SDDELLQY 106 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHH--------HHCCCcCCCHHHHHHHHHHHHhC---CHHHHHHH
Confidence 7888888777764443222 3333222223 3333 34799999999999865 23334444
Q ss_pred HHhHHHHH
Q psy18155 87 LDSVLPQL 94 (185)
Q Consensus 87 l~~~Lp~L 94 (185)
|.++.++|
T Consensus 107 L~QLVQaL 114 (171)
T cd00872 107 LLQLVQVL 114 (171)
T ss_pred HHHHHHHH
Confidence 44444444
No 111
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=71.68 E-value=2.1 Score=23.75 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=19.0
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhhc
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESLK 29 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l~ 29 (185)
|.-.+..||++|- ++.+|.|.+.++
T Consensus 2 R~~Aa~aLg~igd---~~ai~~L~~~L~ 26 (27)
T PF03130_consen 2 RRAAARALGQIGD---PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHGGG-S---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHhc
Confidence 5667778887765 799999998875
No 112
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=70.75 E-value=19 Score=28.68 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=53.2
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHH
Q psy18155 49 TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVR 128 (185)
Q Consensus 49 ~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr 128 (185)
+.+.+...+++++.-+||.++.++-..+.. ......+.-+-..++|++.-|+
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----------------------------~~~~~~l~~~~~~~~d~~~~vq 172 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK----------------------------EDFDELLEIIEALLKDEEYYVQ 172 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----------------------------CHHHHHHHHHHHCTTGS-HHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----------------------------cCHHHHHHHHHHHcCCchHHHH
Confidence 345566999999999999997766433221 1111223334455678899999
Q ss_pred HHHHHHHHHHhhcChhhHHHhHhhH
Q psy18155 129 RVALVAFNSAAHNKPSLVIDLLDSV 153 (185)
Q Consensus 129 ~~A~~~L~~~a~~~p~lv~~~L~~l 153 (185)
++.--.|.+.+-..|+.+.++|.+-
T Consensus 173 ~ai~w~L~~~~~~~~~~v~~~l~~~ 197 (213)
T PF08713_consen 173 KAIGWALREIGKKDPDEVLEFLQKN 197 (213)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHC
Confidence 9999999999888899998888763
No 113
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=69.34 E-value=16 Score=29.69 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHH
Q psy18155 60 SDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 94 (185)
Q Consensus 60 ~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L 94 (185)
.++.||+.|+.++.++ .++-+.-.|.++.++|
T Consensus 83 ~~~~Vr~yAvr~L~~~---~~e~l~~YlpQLVQaL 114 (175)
T cd00871 83 GHPLVLQYAVRVLESY---PVETVFFYIPQIVQAL 114 (175)
T ss_pred CCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 4788999999999864 4444555555554444
No 114
>KOG1820|consensus
Probab=69.12 E-value=28 Score=34.70 Aligned_cols=107 Identities=20% Similarity=0.286 Sum_probs=82.2
Q ss_pred HhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHH-------------HHHHhcc
Q psy18155 55 SALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIG-------------DFLSALK 121 (185)
Q Consensus 55 ~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~-------------~~l~~l~ 121 (185)
.-..|.|..|-..|+.+++..+...+.+.+++....+|.+|..+.++...++..|..++. ..+..++
T Consensus 302 i~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk 381 (815)
T KOG1820|consen 302 IRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALK 381 (815)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 456699999999999999999988888899999999999999999999988876655542 4556788
Q ss_pred CCCHHHHHHHHHHHHHHhhcCh-hhH-HHhHhhHhhhhhhhh
Q psy18155 122 DSDLNVRRVALVAFNSAAHNKP-SLV-IDLLDSVLPQLYAET 161 (185)
Q Consensus 122 D~d~~Vr~~A~~~L~~~a~~~p-~lv-~~~L~~llp~Ly~et 161 (185)
+...-+|..+...|+..-..-. ..+ .+-+..++|.+++..
T Consensus 382 ~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~ 423 (815)
T KOG1820|consen 382 GKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHI 423 (815)
T ss_pred CCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhc
Confidence 8888889888888777543322 222 344566777775554
No 115
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=68.29 E-value=51 Score=25.10 Aligned_cols=78 Identities=18% Similarity=0.160 Sum_probs=50.7
Q ss_pred ccCCccchHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhH--HhH
Q psy18155 13 TLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLL--DSV 90 (185)
Q Consensus 13 ~~~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l--~~~ 90 (185)
.-.+|.-++ .+.+++.+.....++.++.+ -.-|+++++++...||..+.+.+.|-..-+...+ ..|
T Consensus 19 ~~~Dw~~~l-~icD~i~~~~~~~kea~~~l-----------~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~f 86 (140)
T PF00790_consen 19 PSPDWSLIL-EICDLINSSPDGAKEAARAL-----------RKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEF 86 (140)
T ss_dssp SS--HHHHH-HHHHHHHTSTTHHHHHHHHH-----------HHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHH
T ss_pred CCCCHHHHH-HHHHHHHcCCccHHHHHHHH-----------HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHH
Confidence 345674443 57777766655555555522 2677889999999999999999888766555555 237
Q ss_pred HHHHHHHhhcCC
Q psy18155 91 LPQLYAETAVKP 102 (185)
Q Consensus 91 Lp~L~~~t~~~~ 102 (185)
+-.|++....+.
T Consensus 87 l~~l~~l~~~~~ 98 (140)
T PF00790_consen 87 LDELVKLIKSKK 98 (140)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHccCC
Confidence 776666555443
No 116
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=67.66 E-value=55 Score=32.18 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=24.9
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhhcChh
Q psy18155 113 IGDFLSALKDSDLNVRRVALVAFNSAAHNKPS 144 (185)
Q Consensus 113 m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~ 144 (185)
..|++..++|.+.+||+.|=.+|.-.+...+.
T Consensus 622 ~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~ 653 (708)
T PF05804_consen 622 PAYLIDLMHDKNAEIRKVCDNALDIIAEYDEE 653 (708)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHH
Confidence 35899999999999999998777666554443
No 117
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=67.42 E-value=8.3 Score=23.71 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=17.9
Q ss_pred hHHHHHHhccCCChHHHHHHHHH
Q psy18155 49 TIGDFLSALKDSDLNVRRVALVA 71 (185)
Q Consensus 49 ~i~~fl~~l~d~d~~vR~~al~~ 71 (185)
+...+...+.|+++.||.+|+..
T Consensus 19 v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 19 VQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHhcCCChHHHHHHHHH
Confidence 44445588999999999999764
No 118
>KOG2032|consensus
Probab=65.72 E-value=52 Score=31.11 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=44.5
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcC
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVK 101 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~ 101 (185)
.|+..+-.+.+-..||+.++|+.|..++--.+...|+-++-|-...+-++|...-|+
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~ 311 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDD 311 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcC
Confidence 356666666677889999999999999987777788888888777777666655554
No 119
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=65.41 E-value=56 Score=28.78 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=73.4
Q ss_pred HHhhcc-cCCccchHHHHHHhhc--C-CCcccccchhhhhHHHHhhHHHHH-HhccCC-ChHHHHHHHHHHHH-hhhcCc
Q psy18155 8 CLGKLT-LIDPSNLLPRLQESLK--S-NSALMRTTPQSIDPLLRQTIGDFL-SALKDS-DLNVRRVALVAFNS-AAHNKP 80 (185)
Q Consensus 8 ~lg~l~-~~~~~~~l~~L~~~l~--~-~~~~~r~~~~~~d~~L~~~i~~fl-~~l~d~-d~~vR~~al~~ln~-~~~~kp 80 (185)
+|..+. ..+|.+++.-|.++.+ + ........|.++ .|.+=| ++++-. =..|++.||.++.. |-...+
T Consensus 15 ~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~------~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~ 88 (307)
T PF04118_consen 15 ALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKL------QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGP 88 (307)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHH------HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCH
Confidence 344333 4889988777666654 2 333333333322 233322 555422 34599999999954 456677
Q ss_pred hhhHHhHHhHHHHHHHHhhcCCCCCch---------------HHHhhHHH----HHHhccCCCHHHHHHHH
Q psy18155 81 SLVIDLLDSVLPQLYAETAVKPQSIDP---------------LLRQTIGD----FLSALKDSDLNVRRVAL 132 (185)
Q Consensus 81 ~ll~~~l~~~Lp~L~~~t~~~~~~vr~---------------~L~~~m~~----~l~~l~D~d~~Vr~~A~ 132 (185)
..+...+.-++|+||-.-+-.+-.||. .|.|++.+ ++.++.|++-|+-.-++
T Consensus 89 ~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~ 159 (307)
T PF04118_consen 89 DGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTL 159 (307)
T ss_pred HHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHH
Confidence 788888888999998776666555653 44555543 44677777777766665
No 120
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=65.37 E-value=95 Score=27.17 Aligned_cols=85 Identities=24% Similarity=0.285 Sum_probs=57.7
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhh-cCchhhHHhHHh------HHHHHHHHhhcC--C--------CCCch
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAH-NKPSLVIDLLDS------VLPQLYAETAVK--P--------QSIDP 107 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~-~kp~ll~~~l~~------~Lp~L~~~t~~~--~--------~~vr~ 107 (185)
+|...+..+-..++.....+...+|..+++.+. +.....++.+.. -+|.|.....-. . ..+|+
T Consensus 53 iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~ 132 (330)
T PF11707_consen 53 ILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRT 132 (330)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHH
Confidence 577777777799999999899999999999998 777887777766 355555333211 1 14554
Q ss_pred HHHhhHHHHHHhccCCCHHHHHHHH
Q psy18155 108 LLRQTIGDFLSALKDSDLNVRRVAL 132 (185)
Q Consensus 108 ~L~~~m~~~l~~l~D~d~~Vr~~A~ 132 (185)
. .+..++.-+...+..+|+.-+
T Consensus 133 ~---fI~F~Lsfl~~~~~~~~~~lL 154 (330)
T PF11707_consen 133 N---FIRFWLSFLSSGDPELKRDLL 154 (330)
T ss_pred H---HHHHHHHHHccCCHHHHHHHH
Confidence 3 455566666556666666655
No 121
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=65.36 E-value=63 Score=25.10 Aligned_cols=76 Identities=20% Similarity=0.121 Sum_probs=50.7
Q ss_pred ccCCccchHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHh--H
Q psy18155 13 TLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS--V 90 (185)
Q Consensus 13 ~~~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~--~ 90 (185)
.-.+|. ++-++.+++.+.....+++.+.+- .-+++.|++|-..||..+-+.+.|-..-+...+.+ |
T Consensus 14 ~~~dw~-~il~icD~I~~~~~~~k~a~ral~-----------KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~F 81 (144)
T cd03568 14 TSENWG-LILDVCDKVKSDENGAKDCLKAIM-----------KRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDF 81 (144)
T ss_pred CCcCHH-HHHHHHHHHhcCCccHHHHHHHHH-----------HHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHH
Confidence 346774 445677777766666666666332 45678999999999999998887777666555533 5
Q ss_pred HHHHHHHhhc
Q psy18155 91 LPQLYAETAV 100 (185)
Q Consensus 91 Lp~L~~~t~~ 100 (185)
+..|.+..+.
T Consensus 82 l~eL~kl~~~ 91 (144)
T cd03568 82 TQELKKLIND 91 (144)
T ss_pred HHHHHHHhcc
Confidence 5555555554
No 122
>KOG2973|consensus
Probab=64.40 E-value=78 Score=28.40 Aligned_cols=89 Identities=11% Similarity=0.114 Sum_probs=54.8
Q ss_pred HHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCC---------------CCchHHHhh-HHHH
Q psy18155 53 FLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQ---------------SIDPLLRQT-IGDF 116 (185)
Q Consensus 53 fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~---------------~vr~~L~~~-m~~~ 116 (185)
...++.++++.||+.|+..+.......-+.+...=...++.|++...+.++ .+|++|... +...
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~~~~a~~alVnlsq~~~l~~~ll~~~~k~l 87 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDPAEPAATALVNLSQKEELRKKLLQDLLKVL 87 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCcccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 347778888899999887665554444444444445577888888887776 112332222 2233
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhhc
Q psy18155 117 LSALKDSDLNVRRVALVAFNSAAHN 141 (185)
Q Consensus 117 l~~l~D~d~~Vr~~A~~~L~~~a~~ 141 (185)
+..+-|+.-.++...|+.|...+..
T Consensus 88 ~~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 88 MDMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred HHHhcCcccchHHHHHHHHHHhccC
Confidence 3444466667888888777766443
No 123
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=63.74 E-value=19 Score=28.82 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcC
Q psy18155 60 SDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVK 101 (185)
Q Consensus 60 ~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~ 101 (185)
+|..||+.|+.++..+ .+. -|-.+||.|-+...-+
T Consensus 90 ~~~~VR~yAV~~L~~~---sd~----eL~~yL~QLVQaLKyE 124 (166)
T cd00870 90 TNPVVRKYAVSRLKLA---SDE----ELLLYLLQLVQALKYE 124 (166)
T ss_pred CCHHHHHHHHHHHHhC---CHH----HHHHHHHHHHHHHHhc
Confidence 4789999999999864 233 3344555554444433
No 124
>KOG1222|consensus
Probab=63.19 E-value=48 Score=31.68 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=19.7
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHh
Q psy18155 115 DFLSALKDSDLNVRRVALVAFNSAA 139 (185)
Q Consensus 115 ~~l~~l~D~d~~Vr~~A~~~L~~~a 139 (185)
|++..+-|.+.+||+.|=.+|--.+
T Consensus 638 ylIDLMHDkN~eiRkVCDn~LdIia 662 (791)
T KOG1222|consen 638 YLIDLMHDKNAEIRKVCDNALDIIA 662 (791)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7888888999999999976655443
No 125
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=61.48 E-value=24 Score=28.44 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=41.2
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhc
Q psy18155 48 QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAV 100 (185)
Q Consensus 48 ~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~ 100 (185)
.++.....-++| +.+||-.+...+.-.+...|..+..+||++.+.+=+..+-
T Consensus 66 ~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 66 EFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp HHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred HHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 335555677889 9999999999999999999999999999999888666653
No 126
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=60.45 E-value=39 Score=24.56 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=35.4
Q ss_pred HHHhccCCChHHHHHHHHHHHHhhhcCchh-hHHhHHhHHHHHHHHhh
Q psy18155 53 FLSALKDSDLNVRRVALVAFNSAAHNKPSL-VIDLLDSVLPQLYAETA 99 (185)
Q Consensus 53 fl~~l~d~d~~vR~~al~~ln~~~~~kp~l-l~~~l~~~Lp~L~~~t~ 99 (185)
.-.+|-|-+++||..|+..+...+.+-|.. +..+-..+|+..+....
T Consensus 16 i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 16 ISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 337777999999999999999999888887 55555556655554443
No 127
>KOG1062|consensus
Probab=59.63 E-value=40 Score=33.59 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=51.4
Q ss_pred HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHH
Q psy18155 47 RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLN 126 (185)
Q Consensus 47 ~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~ 126 (185)
..+.|..-..++++++.||+.|+.|..-++..-|.++...+ ..|...+.|.+-.
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~--------------------------~~~~~lL~ek~hG 194 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFV--------------------------IAFRKLLCEKHHG 194 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhh--------------------------HHHHHHHhhcCCc
Confidence 33444555778889999999999999988777776443332 3444444455555
Q ss_pred HHHHHHHHHHHHhhcChhhHHHhHhhHhhhh
Q psy18155 127 VRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 127 Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~L 157 (185)
|=..+...+.+.+...|+.+ .++.++.|.+
T Consensus 195 VL~~~l~l~~e~c~~~~~~l-~~fr~l~~~l 224 (866)
T KOG1062|consen 195 VLIAGLHLITELCKISPDAL-SYFRDLVPSL 224 (866)
T ss_pred eeeeHHHHHHHHHhcCHHHH-HHHHHHHHHH
Confidence 55555555555555555533 4445555554
No 128
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=58.82 E-value=81 Score=24.64 Aligned_cols=76 Identities=18% Similarity=0.133 Sum_probs=53.0
Q ss_pred HHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHH
Q psy18155 53 FLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVAL 132 (185)
Q Consensus 53 fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~ 132 (185)
....+++++.-+||.|..++-..+.. . ..+...+.-+-..+.|++.-|+++.-
T Consensus 110 ~~~w~~s~~~~~rR~~~~~~~~~~~~-----------------------~----~~~~~~l~~~~~~~~d~~~~Vqkav~ 162 (197)
T cd06561 110 LEEWAKSENEWVRRAAIVLLLRLIKK-----------------------E----TDFDLLLEIIERLLHDEEYFVQKAVG 162 (197)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHh-----------------------c----ccHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44888999999999998777544211 0 01122233344566678888999999
Q ss_pred HHHHHHhhcChhhHHHhHhhHhh
Q psy18155 133 VAFNSAAHNKPSLVIDLLDSVLP 155 (185)
Q Consensus 133 ~~L~~~a~~~p~lv~~~L~~llp 155 (185)
-+|.+.+...|..+.+++.+.-.
T Consensus 163 w~L~~~~~~~~~~v~~~l~~~~~ 185 (197)
T cd06561 163 WALREYGKKDPERVIAFLEKNGL 185 (197)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHH
Confidence 99999888888888888876543
No 129
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=58.71 E-value=65 Score=25.02 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.0
Q ss_pred HHHhccCCChHHHHHHHHHHHHh
Q psy18155 53 FLSALKDSDLNVRRVALVAFNSA 75 (185)
Q Consensus 53 fl~~l~d~d~~vR~~al~~ln~~ 75 (185)
|+.++.++|.+|++.||.|+-+.
T Consensus 22 ~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 22 LLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999654
No 130
>KOG4653|consensus
Probab=58.19 E-value=75 Score=32.13 Aligned_cols=104 Identities=22% Similarity=0.223 Sum_probs=66.6
Q ss_pred HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCC--------------------CCCc
Q psy18155 47 RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKP--------------------QSID 106 (185)
Q Consensus 47 ~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~--------------------~~vr 106 (185)
..++--++..++|.|+-|--.|+..+.+.-+-.|.-+.+.+.++ |...+.+. |.+-
T Consensus 767 ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~----Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~ 842 (982)
T KOG4653|consen 767 EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEE----YLSEKKKLQTDYRLKVGEAILKVAQALGELVF 842 (982)
T ss_pred HHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHH----HHhcccCCCccceehHHHHHHHHHHHhccHHH
Confidence 34556788999999999999888877777777776555444331 33444443 2222
Q ss_pred hHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHh
Q psy18155 107 PLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVL 154 (185)
Q Consensus 107 ~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~ll 154 (185)
++..+.+.-|++++.|+|.+-|..+|..|......-...+...+-++.
T Consensus 843 ~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~ 890 (982)
T KOG4653|consen 843 KYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVL 890 (982)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 244445568999999999989999997776665443333333333333
No 131
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=58.08 E-value=16 Score=29.70 Aligned_cols=31 Identities=26% Similarity=0.214 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHH
Q psy18155 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 94 (185)
Q Consensus 61 d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L 94 (185)
|..||+.|+.++.++ .++-+...|.++.++|
T Consensus 89 ~~~Vr~yAV~~L~~~---~d~~l~~yLpQLVQaL 119 (184)
T smart00145 89 DPFVRAYAVERLESA---SDEELLLYLLQLVQAL 119 (184)
T ss_pred CHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 789999999999765 2334444444444444
No 132
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=57.00 E-value=19 Score=29.04 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHH
Q psy18155 60 SDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 94 (185)
Q Consensus 60 ~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L 94 (185)
+|..||+.|+.++.++ ...-+...|.++.++|
T Consensus 83 ~d~~VR~yAV~~L~~~---~ddeL~~yLpQLVQaL 114 (169)
T cd00869 83 PDQEVRAHAVQWLARL---SNDELLDYLPQLVQAL 114 (169)
T ss_pred CChHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 4678999999999865 2333444444444444
No 133
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=56.87 E-value=39 Score=23.82 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=34.4
Q ss_pred HHHHHHh-ccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhc
Q psy18155 50 IGDFLSA-LKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAV 100 (185)
Q Consensus 50 i~~fl~~-l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~ 100 (185)
+-+|... -+.++.+||...|.|+...++++.+-++.-=+.++..|=.-+.+
T Consensus 19 L~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~ 70 (86)
T PF09324_consen 19 LKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKD 70 (86)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhC
Confidence 4456655 45669999999999999998888765555545555444443433
No 134
>KOG4413|consensus
Probab=56.38 E-value=84 Score=28.75 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=16.6
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhh
Q psy18155 115 DFLSALKDSDLNVRRVALVAFNSAAH 140 (185)
Q Consensus 115 ~~l~~l~D~d~~Vr~~A~~~L~~~a~ 140 (185)
-++++++.+|.+|+++|..++.+.+.
T Consensus 132 lildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 132 LILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 45566666777777777766666543
No 135
>KOG1243|consensus
Probab=56.22 E-value=49 Score=32.36 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=52.4
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch-------HHHhhHH---
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP-------LLRQTIG--- 114 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~-------~L~~~m~--- 114 (185)
|-..++|-++.+++.+|..||-.-|.-+-.++.+-+. ...-++++|.+-.-..|.+..+|. .|.|.++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~--~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~ 404 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK--QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN 404 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH--HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh
Confidence 4456788888999999999998866555444322221 111234566665555566555554 2333221
Q ss_pred -------HHHHhccCCCHHHHHHHHHHHHHHhhc
Q psy18155 115 -------DFLSALKDSDLNVRRVALVAFNSAAHN 141 (185)
Q Consensus 115 -------~~l~~l~D~d~~Vr~~A~~~L~~~a~~ 141 (185)
+|-....|++-++|.-.--.+.+.++.
T Consensus 405 Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 405 LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred hcHHHHHHHHhhCccccCcccccceeeecccccc
Confidence 233333355555655555555555444
No 136
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=56.04 E-value=44 Score=25.47 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.5
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 115 DFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 115 ~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
.++..++++|.+||..|+.++...
T Consensus 90 ~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 90 RVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHH
Confidence 567788889999999999888765
No 137
>KOG1943|consensus
Probab=55.80 E-value=74 Score=32.81 Aligned_cols=137 Identities=22% Similarity=0.356 Sum_probs=77.9
Q ss_pred chHHHHHHhhc--------CCCcccccc-------------hhhhhHHHHhhHHHHH-HhccCCChHHHHHHHHHHHHhh
Q psy18155 19 NLLPRLQESLK--------SNSALMRTT-------------PQSIDPLLRQTIGDFL-SALKDSDLNVRRVALVAFNSAA 76 (185)
Q Consensus 19 ~~l~~L~~~l~--------~~~~~~r~~-------------~~~~d~~L~~~i~~fl-~~l~d~d~~vR~~al~~ln~~~ 76 (185)
+++|.+.+.+. +....+||+ +..++.++..+.+.++ .++=|++.++||+|-++|.=-+
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENV 499 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence 77777776653 223455532 3334445666777766 7888999999999987775554
Q ss_pred h---cCchhh--HHhHHh----HHHHHHHHhhcCCCCCchHHHhhHHHHHH-hccCCCHHHHHHHHHHHHHHhhcChhhH
Q psy18155 77 H---NKPSLV--IDLLDS----VLPQLYAETAVKPQSIDPLLRQTIGDFLS-ALKDSDLNVRRVALVAFNSAAHNKPSLV 146 (185)
Q Consensus 77 ~---~kp~ll--~~~l~~----~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~-~l~D~d~~Vr~~A~~~L~~~a~~~p~lv 146 (185)
. |.|+.+ ..+.|- ....-|......=+.......|.+.+.+. ++..=|..+|-.|..+|...+.-.|..+
T Consensus 500 GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~ 579 (1133)
T KOG1943|consen 500 GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYL 579 (1133)
T ss_pred ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhh
Confidence 3 444433 233332 12333333332222222233344444443 4666788899999888888777777654
Q ss_pred H-HhHhhHhh
Q psy18155 147 I-DLLDSVLP 155 (185)
Q Consensus 147 ~-~~L~~llp 155 (185)
. .+|+++++
T Consensus 580 a~~~L~~lld 589 (1133)
T KOG1943|consen 580 ADYVLPPLLD 589 (1133)
T ss_pred cccchhhhhh
Confidence 4 33333333
No 138
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=55.67 E-value=32 Score=30.96 Aligned_cols=78 Identities=24% Similarity=0.372 Sum_probs=45.0
Q ss_pred hHHHHHHhcc-CCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccC-----
Q psy18155 49 TIGDFLSALK-DSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKD----- 122 (185)
Q Consensus 49 ~i~~fl~~l~-d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D----- 122 (185)
..-+.++++- ..+...|.+|+.|+- +.|. |.....||++.+++
T Consensus 198 YF~kvisal~dEs~~~~r~aAl~sLr----~dsG---------------------------lhQLvPYFi~f~~eqit~N 246 (450)
T COG5095 198 YFDKVISALLDESDEQTRDAALESLR----NDSG---------------------------LHQLVPYFIHFFNEQITKN 246 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----cCcc---------------------------HHHHHHHHHHHHHHHHHHh
Confidence 3445565554 447789999988773 2221 22234455554432
Q ss_pred -CCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhh
Q psy18155 123 -SDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 123 -~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~L 157 (185)
.++++-..-.+|..+...|+---+-|++.+++|.+
T Consensus 247 l~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSi 282 (450)
T COG5095 247 LKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSI 282 (450)
T ss_pred hhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHH
Confidence 24444444446666666665555678888888877
No 139
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=54.78 E-value=1.8e+02 Score=31.78 Aligned_cols=76 Identities=5% Similarity=0.198 Sum_probs=45.2
Q ss_pred chhHHHHHhhccc-------CCccchHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHH
Q psy18155 2 RNVVAECLGKLTL-------IDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNS 74 (185)
Q Consensus 2 r~vvae~lg~l~~-------~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~ 74 (185)
|-.|.+|+.++-. ..|..++.-+.....++.+.....+- + .+..++-+|+..+..-....-...+.|+..
T Consensus 1200 rE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAF--e-tl~~I~~d~f~~l~~~~~~~F~DlV~cL~~ 1276 (1780)
T PLN03076 1200 RELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAF--E-IIEKIIREYFPYITETETTTFTDCVNCLIA 1276 (1780)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHH--H-HHHHHHHhhhhhccccchhHHHHHHHHHHH
Confidence 5567777754322 68999998888776654432221111 1 245555666665554334555667778888
Q ss_pred hhhcCc
Q psy18155 75 AAHNKP 80 (185)
Q Consensus 75 ~~~~kp 80 (185)
|+.++-
T Consensus 1277 Fa~q~~ 1282 (1780)
T PLN03076 1277 FTNSRF 1282 (1780)
T ss_pred HHhCcC
Confidence 876654
No 140
>KOG1020|consensus
Probab=54.71 E-value=95 Score=33.30 Aligned_cols=116 Identities=22% Similarity=0.317 Sum_probs=75.9
Q ss_pred chHHHHHHhhcCCCcccccc-------hhhhhH-HH-HhhHHH-HHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHH
Q psy18155 19 NLLPRLQESLKSNSALMRTT-------PQSIDP-LL-RQTIGD-FLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD 88 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r~~-------~~~~d~-~L-~~~i~~-fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~ 88 (185)
-+|..+...++.+.+.+|.. -+..|. +| ++.+-. .-+-+.|...-||-+||..+.-++-..|+++..+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy-- 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY-- 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH--
Confidence 45666666666666666622 233344 22 222322 2377789999999999999998887777655544
Q ss_pred hHHHHHHHHhhcCCCCCch----HHHh------------h-HHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 89 SVLPQLYAETAVKPQSIDP----LLRQ------------T-IGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 89 ~~Lp~L~~~t~~~~~~vr~----~L~~------------~-m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
-..+-++..|..-.||+ +|+. . ...|+..++|+.-.|++.++.+|.+.
T Consensus 894 --Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 894 --YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred --HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 44555556777777776 2211 1 24888999887666999999888775
No 141
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=54.26 E-value=1e+02 Score=24.10 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=40.3
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcC-chhhHHhHHhHHHHHHHHhhc
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNK-PSLVIDLLDSVLPQLYAETAV 100 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~k-p~ll~~~l~~~Lp~L~~~t~~ 100 (185)
+...+-+..+++++.+..-|-.++..+...+..- +..+..+=..++..|++....
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~ 78 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK 78 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC
Confidence 5556667779999999999999988887776654 566656666666666655544
No 142
>KOG1991|consensus
Probab=53.93 E-value=2.1e+02 Score=29.43 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=72.9
Q ss_pred HHHHHhhcccCCccchHHHHHHhhcCC--CcccccchhhhhHH--------------------HHhh-HHHHHHhccCCC
Q psy18155 5 VAECLGKLTLIDPSNLLPRLQESLKSN--SALMRTTPQSIDPL--------------------LRQT-IGDFLSALKDSD 61 (185)
Q Consensus 5 vae~lg~l~~~~~~~~l~~L~~~l~~~--~~~~r~~~~~~d~~--------------------L~~~-i~~fl~~l~d~d 61 (185)
+.+|..|=|-..-|.+++-+.+.+++- +..-++.++.-|.. +..+ ++..+-.+++|.
T Consensus 396 l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~ 475 (1010)
T KOG1991|consen 396 LTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY 475 (1010)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch
Confidence 345555555566677777777777621 11222222222221 1111 222224556777
Q ss_pred hHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhcc-CCCHHHHHHHHHHHHHHhh
Q psy18155 62 LNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALK-DSDLNVRRVALVAFNSAAH 140 (185)
Q Consensus 62 ~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~-D~d~~Vr~~A~~~L~~~a~ 140 (185)
-..|.-|.-.++.+.+. .-++. ..+..-+.-...++. |.++.||-+|..+|.....
T Consensus 476 g~Lrarac~vl~~~~~~--------------------df~d~---~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~ 532 (1010)
T KOG1991|consen 476 GYLRARACWVLSQFSSI--------------------DFKDP---NNLSEALELTHNCLLNDNELPVRVEAALALQSFIS 532 (1010)
T ss_pred hHHHHHHHHHHHHHHhc--------------------cCCCh---HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence 78888887777765321 11111 123333444445555 8999999999988888777
Q ss_pred cChhh---HHHhHhhHhhhh
Q psy18155 141 NKPSL---VIDLLDSVLPQL 157 (185)
Q Consensus 141 ~~p~l---v~~~L~~llp~L 157 (185)
+.+.. ++++++.++.-|
T Consensus 533 ~~~~~~e~~~~hvp~~mq~l 552 (1010)
T KOG1991|consen 533 NQEQADEKVSAHVPPIMQEL 552 (1010)
T ss_pred cchhhhhhHhhhhhHHHHHH
Confidence 66654 677777666665
No 143
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=53.22 E-value=62 Score=25.23 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=62.5
Q ss_pred CCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch--HH-----------------HhhHHHHHHh
Q psy18155 59 DSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP--LL-----------------RQTIGDFLSA 119 (185)
Q Consensus 59 d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~--~L-----------------~~~m~~~l~~ 119 (185)
....++|..|+.+++......+.-..+.+.+|+..++.+...+ +.++- .+ ...+..++..
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d-~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMD-SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC-HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccch-hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 3577788888888877766666666777777887777666544 11110 00 0012344445
Q ss_pred cc--CCCHHHHHHHHHHHHHHhhcC--hhhHHHhHhhHhhhhhhhh
Q psy18155 120 LK--DSDLNVRRVALVAFNSAAHNK--PSLVIDLLDSVLPQLYAET 161 (185)
Q Consensus 120 l~--D~d~~Vr~~A~~~L~~~a~~~--p~lv~~~L~~llp~Ly~et 161 (185)
++ .++..+..+++.+|+.++-.+ ...+..+.-.++..+|+.+
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~ 140 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNS 140 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTC
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccc
Confidence 54 578889999999999986543 3334455556666667543
No 144
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=52.25 E-value=16 Score=20.11 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=21.0
Q ss_pred CchhHHHHHhhcccCCccchHHHHHHhhcC
Q psy18155 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKS 30 (185)
Q Consensus 1 ~r~vvae~lg~l~~~~~~~~l~~L~~~l~~ 30 (185)
+|--+++.||+++- ++.++.|.+.+++
T Consensus 3 vR~~aa~aLg~~~~---~~a~~~L~~~l~d 29 (30)
T smart00567 3 VRHEAAFALGQLGD---EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHcCC---HhHHHHHHHHhcC
Confidence 36678899998865 5888888888864
No 145
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=51.77 E-value=22 Score=27.09 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.5
Q ss_pred HHHHhccCCChHHHHHHHHHHHHh
Q psy18155 52 DFLSALKDSDLNVRRVALVAFNSA 75 (185)
Q Consensus 52 ~fl~~l~d~d~~vR~~al~~ln~~ 75 (185)
..+.+|.|+|.+||.-||.|+.-.
T Consensus 90 ~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 90 RVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHH
Confidence 456899999999999999998744
No 146
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=50.11 E-value=37 Score=24.46 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccC
Q psy18155 63 NVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKD 122 (185)
Q Consensus 63 ~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D 122 (185)
.-|..++.++.+++..-|.-+=+.|+.+|..|-..+++ +..|++-....++.|...=+|
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 35677889999999999999999999999998888885 777777666677777755444
No 147
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=49.75 E-value=40 Score=30.55 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=39.1
Q ss_pred chHHHHHHhhcCCCcccc-------------cchhhhhHHHHhhHH-HHHHhccCCChHHHHHHHHHHHHhh
Q psy18155 19 NLLPRLQESLKSNSALMR-------------TTPQSIDPLLRQTIG-DFLSALKDSDLNVRRVALVAFNSAA 76 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r-------------~~~~~~d~~L~~~i~-~fl~~l~d~d~~vR~~al~~ln~~~ 76 (185)
+++-+|.+.++++.+..- ..|...+-..++=.- ..+.+++|+|++||=-||.++.+.+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 567888899988876622 334333322222233 3568999999999999999887543
No 148
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=49.32 E-value=2.5e+02 Score=28.25 Aligned_cols=125 Identities=19% Similarity=0.128 Sum_probs=82.0
Q ss_pred HHHHHhccCCChHHHHHHHHHH-HHhhhcCchh-hHH----hHHhHHHHHHHHhhcCCCCCchHH-Hh------------
Q psy18155 51 GDFLSALKDSDLNVRRVALVAF-NSAAHNKPSL-VID----LLDSVLPQLYAETAVKPQSIDPLL-RQ------------ 111 (185)
Q Consensus 51 ~~fl~~l~d~d~~vR~~al~~l-n~~~~~kp~l-l~~----~l~~~Lp~L~~~t~~~~~~vr~~L-~~------------ 111 (185)
..|..+++++....|...+... |..+|-+-.- +.+ .+..++-.|-++.+|....+|++- .-
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 3577889999999999887654 6666654443 444 556688888888889888888731 11
Q ss_pred -----hHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHH------------------HhHhhHhhhhhhhhhhcchhh
Q psy18155 112 -----TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVI------------------DLLDSVLPQLYAETAVKKTLI 168 (185)
Q Consensus 112 -----~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~------------------~~L~~llp~Ly~et~vk~el~ 168 (185)
...-...+++|..-.|||-|...++...-..|-.+. ..++.+-|.+ .|+....|.+
T Consensus 382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~h~~~l~~~~wek~L~~~E~qlNslk~~~-qe~l~D~E~E 460 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASEHGSQLRLTLWEKNLGSAENQLNSLKSGL-QETLCDGEKE 460 (1128)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhhccchhhhHHHHhhcchhHhHhhccchhh-hccccchHHh
Confidence 112344688899999999999888877655555321 2233444444 6666666655
Q ss_pred hhhccCCc
Q psy18155 169 REVEMGPF 176 (185)
Q Consensus 169 R~vdmgPf 176 (185)
-+.|.|-.
T Consensus 461 veqd~~q~ 468 (1128)
T COG5098 461 VEQDEGQC 468 (1128)
T ss_pred hhhhhhhh
Confidence 55555543
No 149
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=48.45 E-value=1.9e+02 Score=28.74 Aligned_cols=150 Identities=21% Similarity=0.245 Sum_probs=91.5
Q ss_pred ccchHHHHHHhhcCCCcccc-----cchhhhhH----HHH--hhHHHHH-HhccCCChHHHHHHHHHHHHhhhcCchh--
Q psy18155 17 PSNLLPRLQESLKSNSALMR-----TTPQSIDP----LLR--QTIGDFL-SALKDSDLNVRRVALVAFNSAAHNKPSL-- 82 (185)
Q Consensus 17 ~~~~l~~L~~~l~~~~~~~r-----~~~~~~d~----~L~--~~i~~fl-~~l~d~d~~vR~~al~~ln~~~~~kp~l-- 82 (185)
|=+++|.|+.=...|++.+| ....-++- .++ +.|-++| .++-|.|+.-|+.|...+...+-|-|..
T Consensus 798 pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~ 877 (975)
T COG5181 798 PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGD 877 (975)
T ss_pred chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCccc
Confidence 34788999988888888888 11111110 022 2244455 8899999999999988887777675543
Q ss_pred ---hHHhHHhHHHHHHHHhhcCCCCCch-------HH--HhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhH
Q psy18155 83 ---VIDLLDSVLPQLYAETAVKPQSIDP-------LL--RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLL 150 (185)
Q Consensus 83 ---l~~~l~~~Lp~L~~~t~~~~~~vr~-------~L--~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L 150 (185)
..-.|+-+.|.+++...---..+++ .| .+.|.|..+++....-.||+.=+..+|..-+-..+...|+
T Consensus 878 eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~~damvp~- 956 (975)
T COG5181 878 EDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPC- 956 (975)
T ss_pred HHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhccCchHHHHHHHHHHHhhhhhccccccccc-
Confidence 2333344555555433221112222 22 1234577788988999999999888888755444434333
Q ss_pred hhHhhhhhhhhhhcchhhhhhcc
Q psy18155 151 DSVLPQLYAETAVKKTLIREVEM 173 (185)
Q Consensus 151 ~~llp~Ly~et~vk~el~R~vdm 173 (185)
.--+.+..+|+.|+.++
T Consensus 957 ------ypv~~d~n~e~~~~l~i 973 (975)
T COG5181 957 ------YPVEEDLNPELARTLHI 973 (975)
T ss_pred ------ccCCCCcCHHHHhhhhc
Confidence 43455557777777665
No 150
>KOG4653|consensus
Probab=48.31 E-value=2.6e+02 Score=28.48 Aligned_cols=62 Identities=26% Similarity=0.406 Sum_probs=41.5
Q ss_pred cccCCccchHHHHHHhhcCCCc----ccc--------cchhhhhH----HHHhhHHHHHHhccCCChHHHHHHHHHHH
Q psy18155 12 LTLIDPSNLLPRLQESLKSNSA----LMR--------TTPQSIDP----LLRQTIGDFLSALKDSDLNVRRVALVAFN 73 (185)
Q Consensus 12 l~~~~~~~~l~~L~~~l~~~~~----~~r--------~~~~~~d~----~L~~~i~~fl~~l~d~d~~vR~~al~~ln 73 (185)
|+-.-+.+++|.|.+...+.+. +.| -.....-+ |.+.++--|+.-+++||-..|..+++.+.
T Consensus 795 Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg 872 (982)
T KOG4653|consen 795 LCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLG 872 (982)
T ss_pred HHHhcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHH
Confidence 3445788999999996655433 222 11111111 36677888999999999999999877665
No 151
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=48.08 E-value=66 Score=25.19 Aligned_cols=52 Identities=31% Similarity=0.300 Sum_probs=30.1
Q ss_pred CccchHHHHHHhhcCCCcccc---------cchhhhhHHHHhhHHHHHHhccC--CChHHHHHHHHHHHHh
Q psy18155 16 DPSNLLPRLQESLKSNSALMR---------TTPQSIDPLLRQTIGDFLSALKD--SDLNVRRVALVAFNSA 75 (185)
Q Consensus 16 ~~~~~l~~L~~~l~~~~~~~r---------~~~~~~d~~L~~~i~~fl~~l~d--~d~~vR~~al~~ln~~ 75 (185)
+=|..+|.+.+.+.-.++... +.+... ..-|+++.. +|..||+.|+.++.++
T Consensus 36 ~~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~--------~~aL~LL~~~~~~~~vr~yAv~~L~~~ 98 (152)
T cd00864 36 NVPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSP--------EDALELLSPKYPDPVVRQYAVRVLESA 98 (152)
T ss_pred hChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHcCCcCCCHHHHHHHHHHHHhC
Confidence 335777777777764333222 122211 122344443 5699999999999864
No 152
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=47.22 E-value=60 Score=24.05 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=24.1
Q ss_pred HhccCCChHHHHHHHHHHHHhhhcCch-hhHHhHHhHHHHH
Q psy18155 55 SALKDSDLNVRRVALVAFNSAAHNKPS-LVIDLLDSVLPQL 94 (185)
Q Consensus 55 ~~l~d~d~~vR~~al~~ln~~~~~kp~-ll~~~l~~~Lp~L 94 (185)
++++ .++.|..|+.|++.+++.=+. -+-+.+++.+..+
T Consensus 63 saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 63 SALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAI 101 (107)
T ss_pred HHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5555 445999999999999865443 3444444444433
No 153
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=46.71 E-value=26 Score=28.32 Aligned_cols=74 Identities=27% Similarity=0.210 Sum_probs=40.2
Q ss_pred ccCCccchHHHHHHhhcCCCcccc---------cchhhhhHHHHhhHHHHHHhccC--CChHHHHHHHHHHHHhhhcCch
Q psy18155 13 TLIDPSNLLPRLQESLKSNSALMR---------TTPQSIDPLLRQTIGDFLSALKD--SDLNVRRVALVAFNSAAHNKPS 81 (185)
Q Consensus 13 ~~~~~~~~l~~L~~~l~~~~~~~r---------~~~~~~d~~L~~~i~~fl~~l~d--~d~~vR~~al~~ln~~~~~kp~ 81 (185)
.+.+=|+.+|.+...++-.++... |.+.+. ..-|+++.. +|..||+.|+.+++++ .
T Consensus 39 ~l~~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p--------~~AL~LL~~~f~~~~VR~yAv~~L~~~---~-- 105 (184)
T PF00613_consen 39 YLMNNPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISP--------EDALELLSPNFPDPFVRQYAVRRLESL---S-- 105 (184)
T ss_dssp HHTTSGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTH--------HHHHHCTSTT---HHHHHHHHHHHCTS------
T ss_pred HhhhCchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCH--------HHHHHHHHhhccHHHHHHHHHHHHHHc---C--
Confidence 344557788877776654444322 222211 223455553 4699999999999754 1
Q ss_pred hhHHhHHhHHHHHHHHhhcC
Q psy18155 82 LVIDLLDSVLPQLYAETAVK 101 (185)
Q Consensus 82 ll~~~l~~~Lp~L~~~t~~~ 101 (185)
-+-+-.|||.|-+...-+
T Consensus 106 --d~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 106 --DEELLFYLPQLVQALRYE 123 (184)
T ss_dssp --HHHHHHHHHHHHHHGGGS
T ss_pred --chHHHHHHHHHHHHheec
Confidence 233444566665555443
No 154
>KOG1061|consensus
Probab=46.01 E-value=39 Score=33.30 Aligned_cols=96 Identities=22% Similarity=0.325 Sum_probs=55.2
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCc-------------hHHHhh
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSID-------------PLLRQT 112 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr-------------~~L~~~ 112 (185)
...+.|+++.++.-.|...++.--.-+-.-+..+|..-...++.|+ +...+..+.+| ++..-.
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~----kD~~d~np~iR~lAlrtm~~l~v~~i~ey~ 122 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFL----KDCEDPNPLIRALALRTMGCLRVDKITEYL 122 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhh----ccCCCCCHHHHHHHhhceeeEeehHHHHHH
Confidence 4456677777777667777766533333334455554443333333 11222222222 233334
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhhcChhh
Q psy18155 113 IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSL 145 (185)
Q Consensus 113 m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~l 145 (185)
+.|++.+++|++..||+.|....++.=+..+..
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~ 155 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDL 155 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcCChhh
Confidence 569999999999999999987777765544443
No 155
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=45.52 E-value=2.1e+02 Score=24.97 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=64.2
Q ss_pred CccchHHHHHHhhcCCCcccc--------------cchhhhhHHHHhhHHHHHHhccCCC--hHHHHHHHHHHHH---hh
Q psy18155 16 DPSNLLPRLQESLKSNSALMR--------------TTPQSIDPLLRQTIGDFLSALKDSD--LNVRRVALVAFNS---AA 76 (185)
Q Consensus 16 ~~~~~l~~L~~~l~~~~~~~r--------------~~~~~~d~~L~~~i~~fl~~l~d~d--~~vR~~al~~ln~---~~ 76 (185)
.+.+++..+.+.++..+...+ ..-...+.+...+.|.+.+.+.|.. .++|..++.||.. +.
T Consensus 83 ~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~ 162 (309)
T PF05004_consen 83 RRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVG 162 (309)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh
Confidence 345677777777765544333 1111223356677777777777664 5677666555533 23
Q ss_pred hcCchhhH---HhHHhHHHHHHHHhhcCC--------CCC--------------------chHHHhhHHHHHHhccCCCH
Q psy18155 77 HNKPSLVI---DLLDSVLPQLYAETAVKP--------QSI--------------------DPLLRQTIGDFLSALKDSDL 125 (185)
Q Consensus 77 ~~kp~ll~---~~l~~~Lp~L~~~t~~~~--------~~v--------------------r~~L~~~m~~~l~~l~D~d~ 125 (185)
-..+.-+. +.|+.+.-..|-...... ..+ ...+...+..|...+..+|.
T Consensus 163 ~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~ 242 (309)
T PF05004_consen 163 GSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDV 242 (309)
T ss_pred cCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 44444444 333333333332222211 111 11334455677788877899
Q ss_pred HHHHHHHHHH
Q psy18155 126 NVRRVALVAF 135 (185)
Q Consensus 126 ~Vr~~A~~~L 135 (185)
+||.+|-.++
T Consensus 243 ~VRiAAGEai 252 (309)
T PF05004_consen 243 DVRIAAGEAI 252 (309)
T ss_pred HHHHHHHHHH
Confidence 9999997443
No 156
>KOG1048|consensus
Probab=45.45 E-value=1.4e+02 Score=29.56 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=42.0
Q ss_pred HHHHHHhhcCCCcccccchhhhhHHH-----------Hh--hHHHHHHhccCCChHHHHHHHHHH
Q psy18155 21 LPRLQESLKSNSALMRTTPQSIDPLL-----------RQ--TIGDFLSALKDSDLNVRRVALVAF 72 (185)
Q Consensus 21 l~~L~~~l~~~~~~~r~~~~~~d~~L-----------~~--~i~~fl~~l~d~d~~vR~~al~~l 72 (185)
+|+..+++.++++.+|..+..+-..+ +. =||+++..+++++.+|++.|..++
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaL 299 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGAL 299 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHH
Confidence 58888899999999986666555431 12 289999999999999999999888
No 157
>KOG4224|consensus
Probab=45.42 E-value=28 Score=32.07 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=43.9
Q ss_pred CccchHHHHHHhhcCCCcccccchh------hhhH-H-----HHhhHHHHHHhccCCChHHHHHHHHHH-HHhhhc
Q psy18155 16 DPSNLLPRLQESLKSNSALMRTTPQ------SIDP-L-----LRQTIGDFLSALKDSDLNVRRVALVAF-NSAAHN 78 (185)
Q Consensus 16 ~~~~~l~~L~~~l~~~~~~~r~~~~------~~d~-~-----L~~~i~~fl~~l~d~d~~vR~~al~~l-n~~~~~ 78 (185)
.-|+++|.|.++++++++.++..+. .-|+ | =..-+|.++.++++|....=...+.|+ |..+|-
T Consensus 248 aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 248 AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence 3478999999999999988872211 0111 2 233477888899999888878888888 555553
No 158
>KOG0213|consensus
Probab=45.03 E-value=2e+02 Score=29.15 Aligned_cols=134 Identities=19% Similarity=0.240 Sum_probs=83.3
Q ss_pred cchHHHHHHhhcCCCcccccch-----------hhhhH-HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCch----
Q psy18155 18 SNLLPRLQESLKSNSALMRTTP-----------QSIDP-LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS---- 81 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~~~r~~~-----------~~~d~-~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~---- 81 (185)
=.+||.|+.=..-|+..+|--. ..+-. |+-.+.|=+-.++-|.|+.=|+.|.+.+...+-|-|.
T Consensus 994 FtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~e 1073 (1172)
T KOG0213|consen 994 FTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCE 1073 (1172)
T ss_pred hhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcH
Confidence 3678888887777877777111 11111 2333344444888999999999998877766655443
Q ss_pred -hhHHhHHhHHHHHHHHhhcC-------CCCCchHHHh--hHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHh
Q psy18155 82 -LVIDLLDSVLPQLYAETAVK-------PQSIDPLLRQ--TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD 151 (185)
Q Consensus 82 -ll~~~l~~~Lp~L~~~t~~~-------~~~vr~~L~~--~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~ 151 (185)
++.-.|+-+-|.+|+...-- -|..+..|-| .|.|+++++....-.||+.=+..+|+.-|-..+.+.+.++
T Consensus 1074 da~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~dalv~~yp 1153 (1172)
T KOG0213|consen 1074 DALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQDALVACYP 1153 (1172)
T ss_pred HHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccchhhhccc
Confidence 23333444555555432211 1112333332 3468999999999999999999999987766665555543
No 159
>KOG1058|consensus
Probab=44.92 E-value=2.2e+02 Score=28.70 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=38.7
Q ss_pred HhhcCCCcccccchh----hhhH--HHHhhHHHHHHhccCCChHHHHHHHHHHHHhh
Q psy18155 26 ESLKSNSALMRTTPQ----SIDP--LLRQTIGDFLSALKDSDLNVRRVALVAFNSAA 76 (185)
Q Consensus 26 ~~l~~~~~~~r~~~~----~~d~--~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~ 76 (185)
+=|++|+.-+|...- .+++ .|.+++|...+.+.|...-|||.|+.|+-+.-
T Consensus 106 kDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIy 162 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIY 162 (948)
T ss_pred hhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHH
Confidence 345677777774432 2333 58999999999999999999999988776553
No 160
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=44.34 E-value=57 Score=30.58 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=43.4
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch---------------HH
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP---------------LL 109 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~---------------~L 109 (185)
+...+...+-.+....|.+-+..+|.++.-+.|. ..++.++|.+.... ..+..+|. ..
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~------~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v 559 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP------ESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKV 559 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G------GGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHH
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc------hhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHH
Confidence 3444444444666677888888888888555441 12233333332222 11112211 22
Q ss_pred HhhHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 110 RQTIGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 110 ~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
.+.+-++.... .++.|||.+|+.+|...
T Consensus 560 ~~~l~~I~~n~-~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 560 REILLPIFMNT-TEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHHHH-T-TS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCC-CCChhHHHHHHHHHHhc
Confidence 22233444444 47899999999888773
No 161
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=43.68 E-value=3.3e+02 Score=26.81 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=57.6
Q ss_pred hhHHHHHhhccc--CCccc-hHHHHHHhhcCCCcccc---------cchhh----hhHHHHhhHHHHHHhccCCChHHHH
Q psy18155 3 NVVAECLGKLTL--IDPSN-LLPRLQESLKSNSALMR---------TTPQS----IDPLLRQTIGDFLSALKDSDLNVRR 66 (185)
Q Consensus 3 ~vvae~lg~l~~--~~~~~-~l~~L~~~l~~~~~~~r---------~~~~~----~d~~L~~~i~~fl~~l~d~d~~vR~ 66 (185)
+|++.++.+.+. .+-.+ ++--+.+.+++.++.+. ....+ .+.|+...+|-+..+++..|..|-.
T Consensus 578 ~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~ 657 (858)
T COG5215 578 GVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLN 657 (858)
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHH
Confidence 466677776665 33333 55555566666644333 22222 2334666677777888999999988
Q ss_pred HHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhh
Q psy18155 67 VALVAFNSAAHNKPSLVIDLLDSVLPQLYAETA 99 (185)
Q Consensus 67 ~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~ 99 (185)
.|+....-.+...-.=+..+-|.++..|-+..+
T Consensus 658 ~avglvgdlantl~~df~~y~d~~ms~LvQ~ls 690 (858)
T COG5215 658 SAVGLVGDLANTLGTDFNIYADVLMSSLVQCLS 690 (858)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 887766554444444455555666666665554
No 162
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=43.25 E-value=1.1e+02 Score=27.93 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=20.4
Q ss_pred CChHHHHHHHHHH-HHhhhcCchhhHHhHHh---HHHHHHHH
Q psy18155 60 SDLNVRRVALVAF-NSAAHNKPSLVIDLLDS---VLPQLYAE 97 (185)
Q Consensus 60 ~d~~vR~~al~~l-n~~~~~kp~ll~~~l~~---~Lp~L~~~ 97 (185)
.+...|+.++..+ .++..-|.+..-+|+.. |+..|+++
T Consensus 200 ~~~~l~~~il~~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~ 241 (373)
T PF14911_consen 200 RNEELRKFILQVIRSNFLEFKGSAPPPRLASVLAFLQQLLKR 241 (373)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHh
Confidence 3555667776666 44554444444445544 44555555
No 163
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=43.22 E-value=2.8e+02 Score=25.84 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=53.6
Q ss_pred HHHHHHhccC----CChHHHHHHHHHHHHhhhcCchhh----HHhHHhHHHHHHHHhh----cCCCCCch-HHH------
Q psy18155 50 IGDFLSALKD----SDLNVRRVALVAFNSAAHNKPSLV----IDLLDSVLPQLYAETA----VKPQSIDP-LLR------ 110 (185)
Q Consensus 50 i~~fl~~l~d----~d~~vR~~al~~ln~~~~~kp~ll----~~~l~~~Lp~L~~~t~----~~~~~vr~-~L~------ 110 (185)
+-.|+.++.+ +...+|..|+.++.+.+|.-..-- ...+..+.+.|.++.. .+++..+. .|.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 4455566664 366799999988887775221100 1112344444444222 12221111 111
Q ss_pred -----hhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhH
Q psy18155 111 -----QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLL 150 (185)
Q Consensus 111 -----~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L 150 (185)
+.+.+++.+-......+|.+|+.+|-..+...|..+++.|
T Consensus 475 ~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l 519 (574)
T smart00638 475 HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL 519 (574)
T ss_pred ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 1122333322234567999999999988888888777554
No 164
>KOG2137|consensus
Probab=42.78 E-value=1.4e+02 Score=29.48 Aligned_cols=31 Identities=19% Similarity=0.045 Sum_probs=17.6
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhcChh
Q psy18155 114 GDFLSALKDSDLNVRRVALVAFNSAAHNKPS 144 (185)
Q Consensus 114 ~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~ 144 (185)
.+++.+++-.|.++........-+++...+.
T Consensus 470 lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 470 LPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 4555666555666666555555555555554
No 165
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=42.69 E-value=57 Score=32.08 Aligned_cols=101 Identities=27% Similarity=0.223 Sum_probs=70.2
Q ss_pred CchhHHHHHhhccc-CCccchHHHHHHhhcCC-CcccccchhhhhH----H--------HHhhHHHHHHhccCCChHHHH
Q psy18155 1 TRNVVAECLGKLTL-IDPSNLLPRLQESLKSN-SALMRTTPQSIDP----L--------LRQTIGDFLSALKDSDLNVRR 66 (185)
Q Consensus 1 ~r~vvae~lg~l~~-~~~~~~l~~L~~~l~~~-~~~~r~~~~~~d~----~--------L~~~i~~fl~~l~d~d~~vR~ 66 (185)
+|||.+...|...- ..-++++|-|.....|. |-.+|-|-..+-. + |.+++.-+=-.++|....||-
T Consensus 297 VRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi 376 (975)
T COG5181 297 VRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRI 376 (975)
T ss_pred HHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeee
Confidence 47877777776544 45579999999988876 6677744433332 1 333332222667899999999
Q ss_pred HHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcC
Q psy18155 67 VALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVK 101 (185)
Q Consensus 67 ~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~ 101 (185)
.+-.++++.+.+--..=.+.+|.+|-.|.+.++--
T Consensus 377 ~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~h 411 (975)
T COG5181 377 DTANALSYLAELVGPYGIEQFDEVLCPLWEGASQH 411 (975)
T ss_pred hhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhc
Confidence 98888888876665566778899998888887643
No 166
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=42.18 E-value=1.9e+02 Score=24.63 Aligned_cols=84 Identities=24% Similarity=0.271 Sum_probs=51.8
Q ss_pred HHHHHHhcc-CCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHh--hHHHHHHhccCCCHH
Q psy18155 50 IGDFLSALK-DSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQ--TIGDFLSALKDSDLN 126 (185)
Q Consensus 50 i~~fl~~l~-d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~--~m~~~l~~l~D~d~~ 126 (185)
+.+++..++ ..|+.+++.|+.++.-.+. .+ .-++..+. .+..+...+++++..
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aa--------------------f~----~nq~~Ir~~Ggi~lI~~lL~~p~~~ 69 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAA--------------------FP----FNQDIIRDLGGISLIGSLLNDPNPS 69 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcc--------------------Ch----hHHHHHHHcCCHHHHHHHcCCCChH
Confidence 456678888 4689999999888742211 00 00111111 133556678889999
Q ss_pred HHHHHHHHHHHHhhcChh--hHHHhHhhHhhhh
Q psy18155 127 VRRVALVAFNSAAHNKPS--LVIDLLDSVLPQL 157 (185)
Q Consensus 127 Vr~~A~~~L~~~a~~~p~--lv~~~L~~llp~L 157 (185)
||.-|+.+++..+-+..+ .+..++++++..+
T Consensus 70 vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~ 102 (254)
T PF04826_consen 70 VREKALNALNNLSVNDENQEQIKMYIPQVCEET 102 (254)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH
Confidence 999999888866544433 2566667666654
No 167
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=41.98 E-value=2.1e+02 Score=28.15 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=56.4
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhH-----------
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTI----------- 113 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m----------- 113 (185)
+..+.+-..|..+..+|-+||.-.++.+.-...+--.+=-..-+.++..|-++.-|+...||.--.-++
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 355566667788889999999998877754432211100111122444444444455455553100011
Q ss_pred ----HHHHH-hccCCCHHHHHHHHHHHHHHhhcChhhH
Q psy18155 114 ----GDFLS-ALKDSDLNVRRVALVAFNSAAHNKPSLV 146 (185)
Q Consensus 114 ----~~~l~-~l~D~d~~Vr~~A~~~L~~~a~~~p~lv 146 (185)
.-++. -.+|+.-+||++|++++.-.-...|.++
T Consensus 168 n~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~Il 205 (885)
T COG5218 168 NRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCIL 205 (885)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHH
Confidence 12222 3348889999999987766555556543
No 168
>KOG2062|consensus
Probab=41.25 E-value=35 Score=33.96 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=16.9
Q ss_pred HHHH-hccCCCHHHHHHHHHHHH
Q psy18155 115 DFLS-ALKDSDLNVRRVALVAFN 136 (185)
Q Consensus 115 ~~l~-~l~D~d~~Vr~~A~~~L~ 136 (185)
..+| +++|.+.+|||+|..+|.
T Consensus 558 ~lLh~aVsD~nDDVrRaAVialG 580 (929)
T KOG2062|consen 558 RLLHVAVSDVNDDVRRAAVIALG 580 (929)
T ss_pred HhhcccccccchHHHHHHHHHhe
Confidence 5566 589999999999984443
No 169
>KOG2160|consensus
Probab=41.10 E-value=1.6e+02 Score=26.50 Aligned_cols=119 Identities=23% Similarity=0.245 Sum_probs=64.2
Q ss_pred HHHHHhhcCCCcccc-------cchhhhhH-H----H-HhhHHHHHHhc-cCCChHHHHHHHHHHHHhhhcCchhhHHhH
Q psy18155 22 PRLQESLKSNSALMR-------TTPQSIDP-L----L-RQTIGDFLSAL-KDSDLNVRRVALVAFNSAAHNKPSLVIDLL 87 (185)
Q Consensus 22 ~~L~~~l~~~~~~~r-------~~~~~~d~-~----L-~~~i~~fl~~l-~d~d~~vR~~al~~ln~~~~~kp~ll~~~l 87 (185)
+.|...+++.++.+| .|+.+-.. . + ..-..+++..+ .+.+.++|..||.++.+.+.|.+.....-+
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 333446777777777 22222222 1 1 11344555333 567888999999999999988887766555
Q ss_pred Hh----HHHHHHHHhhcCCCCCch-------HHHh---------hH---HHHHHhccCCCHHHHHHHHHHHHHHhh
Q psy18155 88 DS----VLPQLYAETAVKPQSIDP-------LLRQ---------TI---GDFLSALKDSDLNVRRVALVAFNSAAH 140 (185)
Q Consensus 88 ~~----~Lp~L~~~t~~~~~~vr~-------~L~~---------~m---~~~l~~l~D~d~~Vr~~A~~~L~~~a~ 140 (185)
.. .|-.+++.-+.+.-..|+ ++.. .+ .++.+...-.+.+++-.|..++.+...
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 33 333334432222222222 1111 11 144454444577788888766666543
No 170
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=40.87 E-value=43 Score=32.00 Aligned_cols=84 Identities=20% Similarity=0.339 Sum_probs=44.5
Q ss_pred HHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhH--------HHHHHhcc---C
Q psy18155 54 LSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTI--------GDFLSALK---D 122 (185)
Q Consensus 54 l~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m--------~~~l~~l~---D 122 (185)
+.+..|.|..||.-|+-.|-.+....|..+.-..|-+.+.|-.+-..+-..|++.|..++ +.+...+. .
T Consensus 65 ~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~ 144 (556)
T PF05918_consen 65 LDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKS 144 (556)
T ss_dssp HHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---H
T ss_pred HHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence 456669999999999999988888778777766666666553222222222344444433 23333332 3
Q ss_pred CCHHHHHHHHHHHHH
Q psy18155 123 SDLNVRRVALVAFNS 137 (185)
Q Consensus 123 ~d~~Vr~~A~~~L~~ 137 (185)
.|+.||--++..|..
T Consensus 145 ~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 145 GDEQVRERALKFLRE 159 (556)
T ss_dssp S-HHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 466677776655543
No 171
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=40.78 E-value=66 Score=30.02 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy18155 122 DSDLNVRRVALVAFNSA 138 (185)
Q Consensus 122 D~d~~Vr~~A~~~L~~~ 138 (185)
+++.|||.+|+.+|...
T Consensus 527 ~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 527 AEPPEVRMAAVLVLMET 543 (574)
T ss_pred CCChHHHHHHHHHHHhc
Confidence 57899999999988874
No 172
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=40.21 E-value=1.5e+02 Score=29.02 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=18.3
Q ss_pred CChHHHHHHHHHHHHhhhcCch
Q psy18155 60 SDLNVRRVALVAFNSAAHNKPS 81 (185)
Q Consensus 60 ~d~~vR~~al~~ln~~~~~kp~ 81 (185)
++..||.+|++|++-|+.|+..
T Consensus 499 EN~ivRsaAv~aLskf~ln~~d 520 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNISD 520 (898)
T ss_pred hhhHHHHHHHHHHHHhccCccc
Confidence 5778999999999988876654
No 173
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=39.90 E-value=28 Score=32.63 Aligned_cols=99 Identities=19% Similarity=0.257 Sum_probs=50.5
Q ss_pred HHHHhccC----CChHHHHHHHHHHHHhhhcCchh----------hHHhHHhHHHHHHHHhh---cCCCCCch--HHHh-
Q psy18155 52 DFLSALKD----SDLNVRRVALVAFNSAAHNKPSL----------VIDLLDSVLPQLYAETA---VKPQSIDP--LLRQ- 111 (185)
Q Consensus 52 ~fl~~l~d----~d~~vR~~al~~ln~~~~~kp~l----------l~~~l~~~Lp~L~~~t~---~~~~~vr~--~L~~- 111 (185)
.|..+++. .+..+|..|+.++.+.+|.-... .....+.+.+.+.++.. ...+.-.. .|..
T Consensus 435 ~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 514 (618)
T PF01347_consen 435 ELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKAL 514 (618)
T ss_dssp HHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHh
Confidence 34445543 45679999988888776543322 22223334444433333 22111111 1111
Q ss_pred -------hHHHHHHhccCC---CHHHHHHHHHHHHHHhhcChhhHHHhH
Q psy18155 112 -------TIGDFLSALKDS---DLNVRRVALVAFNSAAHNKPSLVIDLL 150 (185)
Q Consensus 112 -------~m~~~l~~l~D~---d~~Vr~~A~~~L~~~a~~~p~lv~~~L 150 (185)
.+..+...+.++ ...+|.+|+.+|-..+...|..+++.|
T Consensus 515 gN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l 563 (618)
T PF01347_consen 515 GNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL 563 (618)
T ss_dssp HHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH
T ss_pred hccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 112444444444 788999999999988888888776554
No 174
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=39.13 E-value=1.2e+02 Score=26.81 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=19.0
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHH
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFN 73 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln 73 (185)
+....-+...++.+.+..-|+.||.++.
T Consensus 176 lq~yf~~It~a~~~~~~~~r~~aL~sL~ 203 (343)
T cd08050 176 LQLYFEEITEALVGSNEEKRREALQSLR 203 (343)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhc
Confidence 3334445556666788888999987775
No 175
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=38.37 E-value=2.2e+02 Score=23.13 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.3
Q ss_pred HhccCCChHHHHHHHHHHHHhhhc
Q psy18155 55 SALKDSDLNVRRVALVAFNSAAHN 78 (185)
Q Consensus 55 ~~l~d~d~~vR~~al~~ln~~~~~ 78 (185)
-.++||++++|..|++++.+...+
T Consensus 47 ~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 47 CILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred HHHcCCchhHHHHHHHHHHHHHHc
Confidence 577899999999999999876544
No 176
>KOG1078|consensus
Probab=37.64 E-value=60 Score=32.41 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=18.7
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHh
Q psy18155 115 DFLSALKDSDLNVRRVALVAFNSAA 139 (185)
Q Consensus 115 ~~l~~l~D~d~~Vr~~A~~~L~~~a 139 (185)
-+..++.|.|.+||-.|-..+..+-
T Consensus 507 llkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 507 LLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHhh
Confidence 4556778999999988876666654
No 177
>KOG3961|consensus
Probab=37.60 E-value=98 Score=26.46 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=33.8
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhhcCh---hhHHHhHhhHhhhh--hhhh
Q psy18155 113 IGDFLSALKDSDLNVRRVALVAFNSAAHNKP---SLVIDLLDSVLPQL--YAET 161 (185)
Q Consensus 113 m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p---~lv~~~L~~llp~L--y~et 161 (185)
+-+...++.--|.+|..-++.+|.......+ ..+.|+..+++|++ |+..
T Consensus 157 I~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~n~~k~~ 210 (262)
T KOG3961|consen 157 ILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVLNTFKNS 210 (262)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhhhhhccc
Confidence 4456667767788888888877666544333 33568889999998 5544
No 178
>KOG0905|consensus
Probab=37.23 E-value=82 Score=33.17 Aligned_cols=53 Identities=23% Similarity=0.220 Sum_probs=39.2
Q ss_pred cCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhH
Q psy18155 58 KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTI 113 (185)
Q Consensus 58 ~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m 113 (185)
+=||-+||+.|+.-+.. .--.-+.+.|++|.++|=-++--++.+|+=+|.-++
T Consensus 900 kfPDqeVR~~AVqwi~~---ls~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl 952 (1639)
T KOG0905|consen 900 KFPDQEVRAHAVQWIAR---LSNDELLDYLPQLVQALKFELYLKSALVQFLLSRSL 952 (1639)
T ss_pred cCCcHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 35899999999776653 233457788888888888888888888876665444
No 179
>KOG1060|consensus
Probab=35.99 E-value=3.6e+02 Score=27.38 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=44.3
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCH
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDL 125 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~ 125 (185)
...+++.|.+.++++|..+=..|+.++.-++.+--. +=..||.-.++.++..|.
T Consensus 390 i~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--------------------------v~~tCL~gLv~Llsshde 443 (968)
T KOG1060|consen 390 ISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--------------------------VTDTCLNGLVQLLSSHDE 443 (968)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--------------------------hhhHHHHHHHHHHhcccc
Confidence 345566777777777776666666666544321111 112356666666665666
Q ss_pred HHHHHHHHHHHHHhhcChhhH
Q psy18155 126 NVRRVALVAFNSAAHNKPSLV 146 (185)
Q Consensus 126 ~Vr~~A~~~L~~~a~~~p~lv 146 (185)
.|=-+|...+-...|..|.-.
T Consensus 444 ~Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 444 LVVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred hhHHHHHHHHHHHHhhChHHH
Confidence 666667767777777777643
No 180
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=35.90 E-value=3.2e+02 Score=24.33 Aligned_cols=106 Identities=13% Similarity=0.177 Sum_probs=70.2
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchh--------hHHhHHhHHHHHHHHhhcCCCCC--chHHHhh---
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSL--------VIDLLDSVLPQLYAETAVKPQSI--DPLLRQT--- 112 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~l--------l~~~l~~~Lp~L~~~t~~~~~~v--r~~L~~~--- 112 (185)
-..++..++..+..-+.+.|+.+...++.....++.. +..|-+++|-.|..--...+-.. -.+|+.|
T Consensus 74 ~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 74 RSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKH 153 (335)
T ss_dssp HHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTS
T ss_pred HhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhh
Confidence 3456777889999999999999999998887766443 33343556666666555332211 0133333
Q ss_pred ------------HHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHh
Q psy18155 113 ------------IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD 151 (185)
Q Consensus 113 ------------m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~ 151 (185)
+..|...++..+-+|+-.|+.||-++....+.++..+|.
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~ 204 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLS 204 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 234555676789999999999999988877887777765
No 181
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=34.89 E-value=3.1e+02 Score=23.89 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=24.5
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHH
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFN 73 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln 73 (185)
.+...+|.|..++.++|.+||-+|=.++.
T Consensus 225 ~~~~~~~~l~~lL~s~d~~VRiAAGEaiA 253 (309)
T PF05004_consen 225 LLEEALPALSELLDSDDVDVRIAAGEAIA 253 (309)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 46778999999999999999999965554
No 182
>KOG2274|consensus
Probab=34.69 E-value=3.3e+02 Score=27.89 Aligned_cols=151 Identities=15% Similarity=0.203 Sum_probs=73.7
Q ss_pred chhHHHHHhhcccCCc----cchHHHHHHhhcCCCcccc-cchhhhhHHHHhhH---HHHHHhccCCChHHHHHHHHHHH
Q psy18155 2 RNVVAECLGKLTLIDP----SNLLPRLQESLKSNSALMR-TTPQSIDPLLRQTI---GDFLSALKDSDLNVRRVALVAFN 73 (185)
Q Consensus 2 r~vvae~lg~l~~~~~----~~~l~~L~~~l~~~~~~~r-~~~~~~d~~L~~~i---~~fl~~l~d~d~~vR~~al~~ln 73 (185)
|+-+|.|+....-.+| |+++|.+.+++++.+.+.. +..+-++.+.+-+. -+|...+. -..+++..-.+.+
T Consensus 107 ~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ee~~~~~~~~--l~~m~~~f~~~~~ 184 (1005)
T KOG2274|consen 107 RSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDVEEMFFVGPVS--LAEMYRIFALTIV 184 (1005)
T ss_pred chHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHhcccccc--hhhhhhhhhhccc
Confidence 6788899888876554 5666777788876555444 34443433211111 11111111 1112222111111
Q ss_pred HhhhcCchhhHHhHHhHHHHHHHHhhcC----CCCCchHHHhhHHHHH----H--hccC-CCHHHHHHHHHHHHHHhhcC
Q psy18155 74 SAAHNKPSLVIDLLDSVLPQLYAETAVK----PQSIDPLLRQTIGDFL----S--ALKD-SDLNVRRVALVAFNSAAHNK 142 (185)
Q Consensus 74 ~~~~~kp~ll~~~l~~~Lp~L~~~t~~~----~~~vr~~L~~~m~~~l----~--~l~D-~d~~Vr~~A~~~L~~~a~~~ 142 (185)
....-++...+ -.++-..+...+.. .+.++..+.+++..|+ | .++| ++--.|.+-...++..-.+-
T Consensus 185 ~s~~~~~~aa~---~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nf 261 (1005)
T KOG2274|consen 185 YSIITRLGAAR---GKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENF 261 (1005)
T ss_pred cchhHHHHhhh---hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhh
Confidence 11111111111 01111111122211 2234456666665444 3 3333 23457777788888888999
Q ss_pred hhhHHHhHhhHhhhh
Q psy18155 143 PSLVIDLLDSVLPQL 157 (185)
Q Consensus 143 p~lv~~~L~~llp~L 157 (185)
|.++.+++.+..|.+
T Consensus 262 p~~~~~~~~~~~~~v 276 (1005)
T KOG2274|consen 262 PSLINPFMMGMFSIV 276 (1005)
T ss_pred HHhhhHHHHhhhhHH
Confidence 998888888777766
No 183
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=34.45 E-value=2.4e+02 Score=24.63 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=34.9
Q ss_pred CCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhh-cChhhHHHhHh
Q psy18155 104 SIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAH-NKPSLVIDLLD 151 (185)
Q Consensus 104 ~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~-~~p~lv~~~L~ 151 (185)
.++.+|.++|..+-.+++.....+...|+..|.+.+. +.....++.+.
T Consensus 49 l~~~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~ 97 (330)
T PF11707_consen 49 LIRSILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLR 97 (330)
T ss_pred HHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3567888888888888888787888888877777766 55555554443
No 184
>KOG2062|consensus
Probab=33.88 E-value=64 Score=32.17 Aligned_cols=100 Identities=20% Similarity=0.138 Sum_probs=58.5
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhhc-CCCcccc---------cchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHH
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESLK-SNSALMR---------TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVA 71 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l~-~~~~~~r---------~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ 71 (185)
|.....-+|-.+..+|..+ |..+++|+ |-++-+| .++..-++ -.|.-+=.++.|+.--||+.|+.+
T Consensus 572 rRaAVialGFVl~~dp~~~-~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa 647 (929)
T KOG2062|consen 572 RRAAVIALGFVLFRDPEQL-PSTVSLLSESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIA 647 (929)
T ss_pred HHHHHHHheeeEecChhhc-hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHH
Confidence 4455556776666666554 66666765 6689999 22222222 111111146779999999999877
Q ss_pred HHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCC
Q psy18155 72 FNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSI 105 (185)
Q Consensus 72 ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~v 105 (185)
+....--...-+.+....|-..+-+-..++.|..
T Consensus 648 ~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 648 LAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 7544333333344555556666666666666544
No 185
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=33.84 E-value=1.7e+02 Score=24.97 Aligned_cols=137 Identities=16% Similarity=0.184 Sum_probs=65.0
Q ss_pred CCccchHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCC---------hHHHHHHHHHHHHhhhc-Cch-hh
Q psy18155 15 IDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSD---------LNVRRVALVAFNSAAHN-KPS-LV 83 (185)
Q Consensus 15 ~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d---------~~vR~~al~~ln~~~~~-kp~-ll 83 (185)
..|+-++|-+..++++.++..|.....+ +..|+.-+.... ..|=..|+...-+++++ -|. --
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~l-------L~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s 187 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQL-------LHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDES 187 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHH-------HHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhh
Confidence 5789999999999998877776332211 122222221111 22222233222222211 000 01
Q ss_pred HHhHHhHHHHHHHHhh----cCCCCCc----hHHHh-hHHHHHHhccCCCHHHHHHHHHHHHHHhh-cChhhHHHhHhhH
Q psy18155 84 IDLLDSVLPQLYAETA----VKPQSID----PLLRQ-TIGDFLSALKDSDLNVRRVALVAFNSAAH-NKPSLVIDLLDSV 153 (185)
Q Consensus 84 ~~~l~~~Lp~L~~~t~----~~~~~vr----~~L~~-~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~-~~p~lv~~~L~~l 153 (185)
...+....|+|+.... .++..-. +.+.. .++.|.+..+=+...++...+..+..... .... ...+|.++
T Consensus 188 ~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~ri 266 (282)
T PF10521_consen 188 LELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQRI 266 (282)
T ss_pred HHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHHH
Confidence 1233344444444422 2222222 23222 23344444422357777777766655443 3333 56899999
Q ss_pred hhhhhh
Q psy18155 154 LPQLYA 159 (185)
Q Consensus 154 lp~Ly~ 159 (185)
+|.++.
T Consensus 267 i~~l~~ 272 (282)
T PF10521_consen 267 IPVLSQ 272 (282)
T ss_pred HHHHHH
Confidence 998865
No 186
>KOG1992|consensus
Probab=33.58 E-value=3.6e+02 Score=27.44 Aligned_cols=27 Identities=26% Similarity=0.148 Sum_probs=20.3
Q ss_pred cCCccchHHHHHHhhcCCCc----ccccchh
Q psy18155 14 LIDPSNLLPRLQESLKSNSA----LMRTTPQ 40 (185)
Q Consensus 14 ~~~~~~~l~~L~~~l~~~~~----~~r~~~~ 40 (185)
+..||.++|.|.+.+++.+- .++.+++
T Consensus 121 P~kWptLl~dL~~~ls~~D~~~~~gVL~tah 151 (960)
T KOG1992|consen 121 PDKWPTLLPDLVARLSSGDFNVINGVLVTAH 151 (960)
T ss_pred chhhHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 47899999999999987653 3345555
No 187
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=33.35 E-value=1.5e+02 Score=25.25 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=20.7
Q ss_pred HhccCCChHHHHHHHHHHHHhhhcCc
Q psy18155 55 SALKDSDLNVRRVALVAFNSAAHNKP 80 (185)
Q Consensus 55 ~~l~d~d~~vR~~al~~ln~~~~~kp 80 (185)
..+.++|..+|..|+.++...+..-|
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp 31 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLP 31 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCC
Confidence 46778999999999999987765544
No 188
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=32.34 E-value=1.2e+02 Score=23.98 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=51.2
Q ss_pred HHHHhhcccCCccchHHHHHHhhcCCCcccccchh--hhh----HHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcC
Q psy18155 6 AECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQ--SID----PLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNK 79 (185)
Q Consensus 6 ae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~--~~d----~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~k 79 (185)
+.++|.+.... +++.+.+.+.+.|+++..|-.+- .+. .....+....-..++|++.-||...=-+|....-..
T Consensus 108 ~~~~~~~~~~~-~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 108 SKLLGPLLKKH-PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp HHHHHHHHHHH-GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHhh-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 44556553333 78888899999999987771111 111 112333333335678999999999877787777777
Q ss_pred chhhHHhHHh
Q psy18155 80 PSLVIDLLDS 89 (185)
Q Consensus 80 p~ll~~~l~~ 89 (185)
|+.+.+.|.+
T Consensus 187 ~~~v~~~l~~ 196 (213)
T PF08713_consen 187 PDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766666554
No 189
>KOG2549|consensus
Probab=32.24 E-value=2.5e+02 Score=27.04 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=49.7
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccC---
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKD--- 122 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D--- 122 (185)
+.-..-+..+++-..|...|+.||.++-+- .-|...++||.+.+.+
T Consensus 205 lQlYy~~It~a~~g~~~~~r~eAL~sL~TD-------------------------------sGL~~LlPyFv~fIae~vs 253 (576)
T KOG2549|consen 205 LQLYYKEITEACTGSDEPLRQEALQSLETD-------------------------------SGLQQLLPYFVTFIAEGVS 253 (576)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccC-------------------------------ccHHHHHHHHHHHHhhhee
Confidence 444455666666669999999999888511 1233344555544332
Q ss_pred CC---HHHHHHHH--HHHHHHhhcChhhHHHhHhhHhhhh
Q psy18155 123 SD---LNVRRVAL--VAFNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 123 ~d---~~Vr~~A~--~~L~~~a~~~p~lv~~~L~~llp~L 157 (185)
-+ -+++.+++ .+.-++.+|.---+.+||-.++|.+
T Consensus 254 ~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSv 293 (576)
T KOG2549|consen 254 VNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSV 293 (576)
T ss_pred eccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHH
Confidence 12 34555555 4555666664334679999999988
No 190
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=30.61 E-value=4e+02 Score=23.93 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=25.6
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhhcChhhH
Q psy18155 115 DFLSALKDSDLNVRRVALVAFNSAAHNKPSLV 146 (185)
Q Consensus 115 ~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv 146 (185)
.+....++.+...|..|..+|.+.+-..|.++
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~P~lv 143 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLNPELV 143 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhCHHHH
Confidence 44555556777899999999999999889875
No 191
>KOG1943|consensus
Probab=30.40 E-value=4.2e+02 Score=27.62 Aligned_cols=112 Identities=23% Similarity=0.256 Sum_probs=70.1
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcC-chhhHHhHHhHHHHHHHHhhcCCCCC-----------chHHHh-
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNK-PSLVIDLLDSVLPQLYAETAVKPQSI-----------DPLLRQ- 111 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~k-p~ll~~~l~~~Lp~L~~~t~~~~~~v-----------r~~L~~- 111 (185)
++.+.+-.++++++|.|..||=.|--.+.=.+.+- +.+.-+-+++.+. +|....+.++-. |..|-|
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 57788888899999999999998866554444333 4455555566666 444444332211 111111
Q ss_pred ---hHHHHH---------HhccCCCHHHHHHHHHHHHHHhh-cChhhHHHhHhhHhhhh
Q psy18155 112 ---TIGDFL---------SALKDSDLNVRRVALVAFNSAAH-NKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 112 ---~m~~~l---------~~l~D~d~~Vr~~A~~~L~~~a~-~~p~lv~~~L~~llp~L 157 (185)
++-+.+ ++.--.+..||-+||.+.-+.++ +.|.-+.|++.++.+.|
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~L 475 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASAL 475 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHH
Confidence 111111 22223577899999999888766 55777888888888877
No 192
>KOG2137|consensus
Probab=30.17 E-value=3.3e+02 Score=26.89 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=19.8
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhh
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAA 76 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~ 76 (185)
...++|=+..++++.+..+.-.+|..+-+++
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~ 417 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVA 417 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHH
Confidence 4444454447777777777777777666553
No 193
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=30.11 E-value=4.6e+02 Score=24.42 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=48.6
Q ss_pred CCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhcc
Q psy18155 59 DSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALK 121 (185)
Q Consensus 59 d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~ 121 (185)
..+...|+.|-.|+...+..-|+++... =+++.-||.....+++.++.-++..++-+..+..
T Consensus 385 ~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 385 SEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred cccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999998555 4577888888877777888777777765555443
No 194
>KOG1077|consensus
Probab=30.04 E-value=3.5e+02 Score=27.22 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=22.4
Q ss_pred HHHhhHHHHHHhcc-CCCHHHHHHHHHHHHHHh
Q psy18155 108 LLRQTIGDFLSALK-DSDLNVRRVALVAFNSAA 139 (185)
Q Consensus 108 ~L~~~m~~~l~~l~-D~d~~Vr~~A~~~L~~~a 139 (185)
.+..|..-++++++ +.|.-||+-|.-.|...+
T Consensus 365 avK~h~d~Ii~sLkterDvSirrravDLLY~mc 397 (938)
T KOG1077|consen 365 AVKKHQDTIINSLKTERDVSIRRRAVDLLYAMC 397 (938)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHh
Confidence 34446666777777 778888888886666654
No 195
>KOG1525|consensus
Probab=29.31 E-value=4.9e+02 Score=27.64 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=20.2
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhcChhh
Q psy18155 114 GDFLSALKDSDLNVRRVALVAFNSAAHNKPSL 145 (185)
Q Consensus 114 ~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~l 145 (185)
..|+....|-..+||.++.....-...+.|.+
T Consensus 303 ~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 303 SAFLGRFNDISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHhccCChhhhhhHHHHhHHHHhcCchh
Confidence 36677777888888888875444444444553
No 196
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.28 E-value=2e+02 Score=28.12 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=62.2
Q ss_pred HHHHHhhcccCCc--cchHHHHHHhhcCCCcccc----------cchhhhhHHH-HhhHHHHHHh-ccCCChHHHHHHHH
Q psy18155 5 VAECLGKLTLIDP--SNLLPRLQESLKSNSALMR----------TTPQSIDPLL-RQTIGDFLSA-LKDSDLNVRRVALV 70 (185)
Q Consensus 5 vae~lg~l~~~~~--~~~l~~L~~~l~~~~~~~r----------~~~~~~d~~L-~~~i~~fl~~-l~d~d~~vR~~al~ 70 (185)
+.++|- ++.+| ..++-.|.+.+..++-..+ ..|.-+-.++ .+++..+|.+ ..|.+..+=-.||.
T Consensus 56 ~~~il~--~~~~P~~K~~~~~l~~~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~ 133 (668)
T PF04388_consen 56 ALEILV--GVQEPHDKHLFDKLNDYFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALL 133 (668)
T ss_pred HHHHHH--hcCCccHHHHHHHHHHHHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHH
Confidence 344444 56777 8899999988876542222 2222222222 3566676644 44889999999999
Q ss_pred HHHHhhhcCchhhHHhHHhHHHHHHHHh
Q psy18155 71 AFNSAAHNKPSLVIDLLDSVLPQLYAET 98 (185)
Q Consensus 71 ~ln~~~~~kp~ll~~~l~~~Lp~L~~~t 98 (185)
++...++.-|..+-.+|.+++...-..+
T Consensus 134 ~LimlLP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 134 VLIMLLPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred HHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999888888765444433
No 197
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=29.13 E-value=2.5e+02 Score=23.95 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=50.1
Q ss_pred CccchHHHHHHhhcCCCcccc----c-chhhhhHHHH----hhHHHHHHhccCCChH--HHHHHHHHHHHhhhcCchhhH
Q psy18155 16 DPSNLLPRLQESLKSNSALMR----T-TPQSIDPLLR----QTIGDFLSALKDSDLN--VRRVALVAFNSAAHNKPSLVI 84 (185)
Q Consensus 16 ~~~~~l~~L~~~l~~~~~~~r----~-~~~~~d~~L~----~~i~~fl~~l~d~d~~--vR~~al~~ln~~~~~kp~ll~ 84 (185)
.-.+.+|.|.++++.++...= | .+..+=+++. .=+..+...+++++.. ||..|+.++...++.+|- -+
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~-~R 148 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI-SR 148 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC-CH
Confidence 345788888888865543111 1 1111111221 2244555677777655 999999999988888874 35
Q ss_pred HhHHhHHHHHHHHhh
Q psy18155 85 DLLDSVLPQLYAETA 99 (185)
Q Consensus 85 ~~l~~~Lp~L~~~t~ 99 (185)
+.+-+++..+|...-
T Consensus 149 e~vi~~f~~ll~~~l 163 (249)
T PF06685_consen 149 EEVIQYFRELLNYFL 163 (249)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666665533
No 198
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=29.10 E-value=4.4e+02 Score=26.09 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=18.3
Q ss_pred hhHHHHHHhccC-CCHHHHHHHHHHHHHHh
Q psy18155 111 QTIGDFLSALKD-SDLNVRRVALVAFNSAA 139 (185)
Q Consensus 111 ~~m~~~l~~l~D-~d~~Vr~~A~~~L~~~a 139 (185)
++++++...+.. ++.+..-+|+.+|+...
T Consensus 490 ~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 490 DFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 344454443332 57788888888888764
No 199
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=27.77 E-value=5.8e+02 Score=24.89 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHhhhcCchhhHHhHHh-HHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHh
Q psy18155 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDS-VLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAA 139 (185)
Q Consensus 61 d~~vR~~al~~ln~~~~~kp~ll~~~l~~-~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a 139 (185)
...-|-.||..|..++...|.-+...++. +++.|++.. ..|.+..+-..|+.+|..+.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L---------------------~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCL---------------------QFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHH---------------------hhcccHHHHHHHHHHHHHHh
Confidence 34567777777888888888655444432 334443333 22666667777777777765
Q ss_pred hcChhhHHHhHhhHhhhh
Q psy18155 140 HNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 140 ~~~p~lv~~~L~~llp~L 157 (185)
=.-|+.+.++|+.+....
T Consensus 140 P~ip~~l~~~L~~Lf~If 157 (668)
T PF04388_consen 140 PHIPSSLGPHLPDLFNIF 157 (668)
T ss_pred ccccchhhHHHHHHHHHH
Confidence 555776777777666543
No 200
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=27.57 E-value=3.2e+02 Score=21.79 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=50.1
Q ss_pred CchhHHHHHhhcccCCccc-----hHHHHHHhhcCCCcc---cccchh---------hhhHHHHhhHHHHHHhccCCChH
Q psy18155 1 TRNVVAECLGKLTLIDPSN-----LLPRLQESLKSNSAL---MRTTPQ---------SIDPLLRQTIGDFLSALKDSDLN 63 (185)
Q Consensus 1 ~r~vvae~lg~l~~~~~~~-----~l~~L~~~l~~~~~~---~r~~~~---------~~d~~L~~~i~~fl~~l~d~d~~ 63 (185)
+|.....|+.++--..+++ ..+.|.+.+..++.. -..+.. .++.|-.+++--+..+++.....
T Consensus 23 vR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~~~y~~~ll~Glv~S~G~~tes 102 (193)
T PF12612_consen 23 VREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLLDLPEYRYSLLSGLVVSAGGLTES 102 (193)
T ss_pred HHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHhccHHHHHHHHhHHHhcCCCCchh
Confidence 4777888888877555442 234555554433321 111111 12223444555566777777777
Q ss_pred HHHHHHHHHHHhhh---cCchhhHHhHHhHHHHH
Q psy18155 64 VRRVALVAFNSAAH---NKPSLVIDLLDSVLPQL 94 (185)
Q Consensus 64 vR~~al~~ln~~~~---~kp~ll~~~l~~~Lp~L 94 (185)
+.+.|-.+|..++. ..+..+...+..++..+
T Consensus 103 l~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il 136 (193)
T PF12612_consen 103 LVRASSAALLSYLRELSDSPEELEQVLSDLLSIL 136 (193)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 77777777777764 34444444444444444
No 201
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=27.17 E-value=2.7e+02 Score=20.92 Aligned_cols=79 Identities=16% Similarity=0.066 Sum_probs=51.6
Q ss_pred cccCCccchHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHh--
Q psy18155 12 LTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS-- 89 (185)
Q Consensus 12 l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~-- 89 (185)
+.-.+|.-+ -++.+++.+.....++..+.+ ..-++++++++-..||..+.+.+.|--.-+...+.+
T Consensus 13 l~~~dw~~~-l~icD~i~~~~~~~k~a~r~l-----------~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~ 80 (133)
T smart00288 13 LLEEDWELI-LEICDLINSTPDGPKDAVRLL-----------KKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKE 80 (133)
T ss_pred CCCcCHHHH-HHHHHHHhCCCccHHHHHHHH-----------HHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHH
Confidence 444666544 456777766655555555522 256779999999999999999998865544444422
Q ss_pred HHHHHHHHhhcCC
Q psy18155 90 VLPQLYAETAVKP 102 (185)
Q Consensus 90 ~Lp~L~~~t~~~~ 102 (185)
|+..|.+..+.+.
T Consensus 81 fl~~L~~l~~~~~ 93 (133)
T smart00288 81 FLNELVKLIKPKY 93 (133)
T ss_pred HHHHHHHHHcCCC
Confidence 7766666555543
No 202
>KOG0946|consensus
Probab=26.49 E-value=7e+02 Score=25.43 Aligned_cols=111 Identities=17% Similarity=0.260 Sum_probs=64.1
Q ss_pred chHHHHHHhhcCCC--cccccchhhhhHH--------HHhhHHHHHHhccC--CChHHHHHHHHHHHHhhhcCchhhHHh
Q psy18155 19 NLLPRLQESLKSNS--ALMRTTPQSIDPL--------LRQTIGDFLSALKD--SDLNVRRVALVAFNSAAHNKPSLVIDL 86 (185)
Q Consensus 19 ~~l~~L~~~l~~~~--~~~r~~~~~~d~~--------L~~~i~~fl~~l~d--~d~~vR~~al~~ln~~~~~kp~ll~~~ 86 (185)
+.++.|.+++.+.. .+-|++++.+-.+ -..=+++|++-++. .|+++=.+||.|+....
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~---------- 91 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILT---------- 91 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHH----------
Confidence 78899999987552 2444554433322 12225566655552 26666677766653322
Q ss_pred HHhHHHHHHHHhhcCCCCC-------ch---HHHh-------hHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHh
Q psy18155 87 LDSVLPQLYAETAVKPQSI-------DP---LLRQ-------TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDL 149 (185)
Q Consensus 87 l~~~Lp~L~~~t~~~~~~v-------r~---~L~~-------~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~ 149 (185)
++++++.| +. -+.. .+.-.+..+...|..||+.|...|.+...++|.-+.+.
T Consensus 92 -----------~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ 160 (970)
T KOG0946|consen 92 -----------SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDA 160 (970)
T ss_pred -----------hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHH
Confidence 22222222 11 0010 22344566766899999999999999888888877655
Q ss_pred H
Q psy18155 150 L 150 (185)
Q Consensus 150 L 150 (185)
+
T Consensus 161 l 161 (970)
T KOG0946|consen 161 L 161 (970)
T ss_pred H
Confidence 4
No 203
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=26.21 E-value=3.4e+02 Score=26.05 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=24.0
Q ss_pred HHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCc
Q psy18155 54 LSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSID 106 (185)
Q Consensus 54 l~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr 106 (185)
|.+.+ .+.+.+++|=..+.-+...=|.+-...++. +|....|++..||
T Consensus 29 l~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a----~~DLcEDed~~iR 76 (556)
T PF05918_consen 29 LDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINA----QLDLCEDEDVQIR 76 (556)
T ss_dssp HHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHH----HHHHHT-SSHHHH
T ss_pred HHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHH----HHHHHhcccHHHH
Confidence 35555 467788887666666655555544333333 3333444444444
No 204
>KOG0413|consensus
Probab=26.12 E-value=1.7e+02 Score=30.53 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=60.8
Q ss_pred chhHHHHHhhcccCC---ccchHHHHHHhhcCCCcccccchhh-hhHHH--------HhhHHHHHHhccCCChHHHHHHH
Q psy18155 2 RNVVAECLGKLTLID---PSNLLPRLQESLKSNSALMRTTPQS-IDPLL--------RQTIGDFLSALKDSDLNVRRVAL 69 (185)
Q Consensus 2 r~vvae~lg~l~~~~---~~~~l~~L~~~l~~~~~~~r~~~~~-~d~~L--------~~~i~~fl~~l~d~d~~vR~~al 69 (185)
||.|.-.+|-+|..- -..++|.+...|.++++-+|...-. +-..| ..++-.|+.++-|.+.+||+.|=
T Consensus 986 RnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~ 1065 (1529)
T KOG0413|consen 986 RNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAK 1065 (1529)
T ss_pred hcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHH
Confidence 444433444444421 2478999999999999988843332 22222 23566888888899999999999
Q ss_pred HHHHHhhhcCc-hhhHHhHHhHHHHHHHHh
Q psy18155 70 VAFNSAAHNKP-SLVIDLLDSVLPQLYAET 98 (185)
Q Consensus 70 ~~ln~~~~~kp-~ll~~~l~~~Lp~L~~~t 98 (185)
.++......+- ..... .|...+|...
T Consensus 1066 f~~~~vL~~~~P~~f~~---~FVe~i~~ln 1092 (1529)
T KOG0413|consen 1066 FYISEVLQSEEPNFFPL---NFVEYIIALN 1092 (1529)
T ss_pred HHHHHHHhhcCccchHH---HHHHHHHHHH
Confidence 99988765543 33333 3555665544
No 205
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=25.11 E-value=7.6e+02 Score=25.35 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.1
Q ss_pred HHHHHhhccc----CCccchHHHHHHhhcCC
Q psy18155 5 VAECLGKLTL----IDPSNLLPRLQESLKSN 31 (185)
Q Consensus 5 vae~lg~l~~----~~~~~~l~~L~~~l~~~ 31 (185)
+|+|+++.+- .+||+++|.|..++++.
T Consensus 105 ~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~ 135 (947)
T COG5657 105 NALAVSRIARLDFPDEWPTLVPDLLSLLSEK 135 (947)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHhhhccc
Confidence 3788887764 67999999999999873
No 206
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.48 E-value=4.2e+02 Score=22.17 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=50.5
Q ss_pred HHHHhhcccCCc-cchHHHHHHhhcCCCcccccchhhhhH-HHHhhHHHHHHhccCCChH-HHHHHHHHHHHhhhcCchh
Q psy18155 6 AECLGKLTLIDP-SNLLPRLQESLKSNSALMRTTPQSIDP-LLRQTIGDFLSALKDSDLN-VRRVALVAFNSAAHNKPSL 82 (185)
Q Consensus 6 ae~lg~l~~~~~-~~~l~~L~~~l~~~~~~~r~~~~~~d~-~L~~~i~~fl~~l~d~d~~-vR~~al~~ln~~~~~kp~l 82 (185)
..++.+++-.+| +.++..+..++.+ .+ +++ -+..++.+++..+++-++. +--.+-+.+--+....-..
T Consensus 97 ~~iI~~lc~~~W~~~~l~~l~~mfrd-------~~--Ls~~e~~~vv~Kv~~~l~~l~l~elPpLvyQLL~Lsskg~k~~ 167 (223)
T PF14675_consen 97 KQIINSLCSSRWPPQILIQLASMFRD-------VP--LSKEELEFVVEKVLSMLKKLDLQELPPLVYQLLLLSSKGSKKL 167 (223)
T ss_dssp HHHHHHHHHS---TTTHHHHHHHGGG-------S-----HHHHHHHHHHHHHHHTTS-GGGHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHhc-------CC--CCHHHHHHHHHHHHHHHhcCChhhccHHHHHHHHHhhcccHHH
Confidence 457888999999 5788888888852 22 333 4667788888888866543 5555444444444444455
Q ss_pred hHHhHHhHHHHHHHHh
Q psy18155 83 VIDLLDSVLPQLYAET 98 (185)
Q Consensus 83 l~~~l~~~Lp~L~~~t 98 (185)
+...+-.|.-.+|...
T Consensus 168 vL~gl~~~F~~~~~~~ 183 (223)
T PF14675_consen 168 VLEGLIKYFNRLDKQK 183 (223)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666666666554
No 207
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.36 E-value=1.8e+02 Score=21.51 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=23.8
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHhhh
Q psy18155 48 QTIGDFLSALKDSDLNVRRVALVAFNSAAH 77 (185)
Q Consensus 48 ~~i~~fl~~l~d~d~~vR~~al~~ln~~~~ 77 (185)
..|+-+++.+.|++.+|++.|+..+.-+..
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 345556699999999999999988876543
No 208
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=24.09 E-value=5.9e+02 Score=23.69 Aligned_cols=100 Identities=18% Similarity=0.304 Sum_probs=58.2
Q ss_pred chhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhh---hcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHH
Q psy18155 38 TPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAA---HNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIG 114 (185)
Q Consensus 38 ~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~---~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~ 114 (185)
+-.++...|+..+|+.|.-+.+++..||...+..++..- ...|+.-.+ ++.++.. |++.. .+..|+.. .+-
T Consensus 13 tD~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LP-v~~Ll~q-~~~~~-~s~~vrnf---sli 86 (501)
T PF13001_consen 13 TDEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLP-VEALLKQ-YKEPS-DSSFVRNF---SLI 86 (501)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCc-HHHHHHH-HhCCC-CchHHHHH---HHH
Confidence 344666779999999999999999999999877776442 222222111 1222221 22222 23455554 455
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhhcCh
Q psy18155 115 DFLSALKDSDLNVRRVALVAFNSAAHNKP 143 (185)
Q Consensus 115 ~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p 143 (185)
|+-+++.--+.+=|...+-.+......+|
T Consensus 87 yi~~g~~Rl~~~e~~~llP~ll~~is~~~ 115 (501)
T PF13001_consen 87 YIEMGFDRLDDEERRELLPSLLKGISKKP 115 (501)
T ss_pred HHHHhhhcCCHHHHHHHHHHHHHhhccCc
Confidence 66667654555556666655555545444
No 209
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.73 E-value=4.6e+02 Score=22.38 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=36.2
Q ss_pred HHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHH
Q psy18155 52 DFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVA 131 (185)
Q Consensus 52 ~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A 131 (185)
.+|..+ .++.++.+..|..++=.+...|. +-+.+...+..+++ ....+|+..++-+|.-+...|
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~--------~~~~~~~~~~~~~~-------~~~~~fl~ll~~~D~~i~~~a 125 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPS--------RVELFLELAKQDDS-------DPYSPFLKLLDRNDSFIQLKA 125 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSS--------SHHHHHHHHH-TTH---------HHHHHHH-S-SSHHHHHHH
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHhcccccc-------hhHHHHHHHhcCCCHHHHHHH
Confidence 555545 56777788777777644332221 11111111111110 034567766655788888888
Q ss_pred HHHHHHHhhcCh
Q psy18155 132 LVAFNSAAHNKP 143 (185)
Q Consensus 132 ~~~L~~~a~~~p 143 (185)
+..|...+-..+
T Consensus 126 ~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 126 AFILTSLLSQGP 137 (312)
T ss_dssp HHHHHHHHTSTT
T ss_pred HHHHHHHHHcCC
Confidence 877777654433
No 210
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=23.67 E-value=1.7e+02 Score=22.66 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=35.8
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhhhhhhhcchhh
Q psy18155 115 DFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLI 168 (185)
Q Consensus 115 ~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly~et~vk~el~ 168 (185)
.++..+.+.|.+|.+.|+..+.+ ...|. +.+| .+-+..|.+++..|.|+-
T Consensus 21 ~~~~LL~~~d~~vQklAL~cll~--~k~~~-l~pY-~d~L~~Lldd~~frdeL~ 70 (141)
T PF07539_consen 21 ALLRLLSSRDPEVQKLALDCLLT--WKDPY-LTPY-KDNLENLLDDKTFRDELT 70 (141)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH--hCcHH-HHhH-HHHHHHHcCcchHHHHHH
Confidence 56677888999999999988876 44465 5566 455666767777766653
No 211
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=23.67 E-value=1.2e+02 Score=21.17 Aligned_cols=27 Identities=19% Similarity=0.173 Sum_probs=22.0
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHhh
Q psy18155 50 IGDFLSALKDSDLNVRRVALVAFNSAA 76 (185)
Q Consensus 50 i~~fl~~l~d~d~~vR~~al~~ln~~~ 76 (185)
+-.++..+.+.|+--|..+++++|+..
T Consensus 60 ~~ela~~~~S~~~lerslglAaiNAl~ 86 (87)
T PF13938_consen 60 ARELAELLLSWNPLERSLGLAAINALS 86 (87)
T ss_dssp HHHHHHCCC-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhh
Confidence 446778899999999999999999763
No 212
>KOG1992|consensus
Probab=23.52 E-value=8.1e+02 Score=25.08 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=47.2
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHh--h-------hcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhh
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSA--A-------HNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQT 112 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~--~-------~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~ 112 (185)
|-..+|.++..+..+...|..+|-.++--. + -..|+.+.+++..+|..||+..+-+...-.+.|...
T Consensus 496 lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKa 571 (960)
T KOG1992|consen 496 LMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKA 571 (960)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHH
Confidence 667789999999999999999986665222 1 224778888889999999976665544334444333
No 213
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=23.36 E-value=2.7e+02 Score=23.72 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=40.9
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCch-hhHHhHHhHHHHHHHH
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS-LVIDLLDSVLPQLYAE 97 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~-ll~~~l~~~Lp~L~~~ 97 (185)
-...+|-++.-+.++...++.-+|.++...+.+-+. .+.+|+.++..+|-.|
T Consensus 206 a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 206 APFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 346677788999999999999999999988876554 5777777777666544
No 214
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=23.04 E-value=6.9e+02 Score=24.77 Aligned_cols=133 Identities=20% Similarity=0.283 Sum_probs=74.0
Q ss_pred hHHHHHhhc--ccCCc---cchHHHHHHhhcCCCc-ccc--cchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHh
Q psy18155 4 VVAECLGKL--TLIDP---SNLLPRLQESLKSNSA-LMR--TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSA 75 (185)
Q Consensus 4 vvae~lg~l--~~~~~---~~~l~~L~~~l~~~~~-~~r--~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~ 75 (185)
++..|+.+. +..++ .+++..|..+++.+.. .+- -....+-+.+...+++|.+.+.++|+.+-..++..+...
T Consensus 258 vle~~l~~i~~~~lt~~e~~qLl~NL~~L~k~eks~~~~~~~~~~~l~~Al~~~L~~i~~lL~~~~~~~~~~~v~lL~~l 337 (696)
T PF14838_consen 258 VLEQCLRQIHTNTLTPTEATQLLQNLALLAKWEKSGNVPPASMSSQLTQALSSHLPDIAQLLLHSDPEVAHAAVKLLDLL 337 (696)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Confidence 445566552 33444 4555555555553322 111 233445556888899999999999999998887777643
Q ss_pred hhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHH---HhhHHHHHHhccCCCHHHHH----HHHHHHHHHhhcChhhHHH
Q psy18155 76 AHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLL---RQTIGDFLSALKDSDLNVRR----VALVAFNSAAHNKPSLVID 148 (185)
Q Consensus 76 ~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L---~~~m~~~l~~l~D~d~~Vr~----~A~~~L~~~a~~~p~lv~~ 148 (185)
--.+.+ .-.+...| +....||..++...+..=+. -|+..|.+.+...|..-.-
T Consensus 338 ~~~~~~--------------------~~~~~~~L~l~~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~~l~~~s~~a~~~ 397 (696)
T PF14838_consen 338 PLPEKA--------------------PLSPSLLLKLSRALVKYFFLCLHEKDVSGKQEGLKRCCQLLSRLCSYSPAARKA 397 (696)
T ss_pred CCcccc--------------------CCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHccCchHHHH
Confidence 211100 00111122 33445777777554443333 3456677777666655555
Q ss_pred hHhhHhhh
Q psy18155 149 LLDSVLPQ 156 (185)
Q Consensus 149 ~L~~llp~ 156 (185)
.|.+++++
T Consensus 398 vLr~LlE~ 405 (696)
T PF14838_consen 398 VLRELLEG 405 (696)
T ss_pred HHHHHHHH
Confidence 66666666
No 215
>KOG3723|consensus
Probab=21.91 E-value=1.2e+02 Score=29.49 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCc-----------hHHHhhHHHHHHhccC-CCHHHHHHHH
Q psy18155 71 AFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSID-----------PLLRQTIGDFLSALKD-SDLNVRRVAL 132 (185)
Q Consensus 71 ~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr-----------~~L~~~m~~~l~~l~D-~d~~Vr~~A~ 132 (185)
.++.....+|+.+.+|++.|+|.|-+.-.-.-.+++ ++|..|+......++| +..+++...|
T Consensus 185 vlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Il 258 (851)
T KOG3723|consen 185 VLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNIL 258 (851)
T ss_pred HHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 455667889999999999998887432211111111 2566666666666666 4556666655
No 216
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=21.36 E-value=3.3e+02 Score=19.76 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=13.0
Q ss_pred CChHHHHHHHHHHHHhhhc
Q psy18155 60 SDLNVRRVALVAFNSAAHN 78 (185)
Q Consensus 60 ~d~~vR~~al~~ln~~~~~ 78 (185)
.+..-|+.|+.++...+..
T Consensus 27 ~~~~ek~~~l~si~~lI~~ 45 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKL 45 (107)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5666777777777766553
No 217
>KOG1517|consensus
Probab=20.76 E-value=3.2e+02 Score=28.77 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=77.7
Q ss_pred chHHHHHHhhcCCCcccc------cc-hhhhhHH-HHhhHH-----HHHHhccC-C--ChHHHHHHHHHHHHhhhcCchh
Q psy18155 19 NLLPRLQESLKSNSALMR------TT-PQSIDPL-LRQTIG-----DFLSALKD-S--DLNVRRVALVAFNSAAHNKPSL 82 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r------~~-~~~~d~~-L~~~i~-----~fl~~l~d-~--d~~vR~~al~~ln~~~~~kp~l 82 (185)
-+.|.+.++|+|+-.+.| |+ --.+|+. =..++. -|++.+.+ + +.+=|..|...|.++.+|-+..
T Consensus 512 GIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lG 591 (1387)
T KOG1517|consen 512 GIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLG 591 (1387)
T ss_pred chHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchh
Confidence 567999999998876666 11 1111110 001111 13344443 2 3577888888889999998877
Q ss_pred hHHhHHh-HHHHHHHHhhcCC-CCCchHHHhhHH--------------------HHHHhccCCCHHHHHHHHHHHHHHhh
Q psy18155 83 VIDLLDS-VLPQLYAETAVKP-QSIDPLLRQTIG--------------------DFLSALKDSDLNVRRVALVAFNSAAH 140 (185)
Q Consensus 83 l~~~l~~-~Lp~L~~~t~~~~-~~vr~~L~~~m~--------------------~~l~~l~D~d~~Vr~~A~~~L~~~a~ 140 (185)
=...++. ++...+.+.++.+ .+.|.-+.=|+| .+...+.|+-.|||.+|..+|.+...
T Consensus 592 Q~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 592 QKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 7777755 8888888888864 333331111222 45678889999999999987777655
Q ss_pred c
Q psy18155 141 N 141 (185)
Q Consensus 141 ~ 141 (185)
+
T Consensus 672 ~ 672 (1387)
T KOG1517|consen 672 N 672 (1387)
T ss_pred c
Confidence 4
No 218
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=20.66 E-value=5.4e+02 Score=22.70 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=51.8
Q ss_pred HHHhhHHHHHHhccCC-------ChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHH
Q psy18155 45 LLRQTIGDFLSALKDS-------DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFL 117 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~-------d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l 117 (185)
-|.+++|-|+.++.+. |..+=...+.+..+.++|.---+-.++-+++|.+.....-+ -+
T Consensus 207 gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~--------------~l 272 (343)
T cd08050 207 GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAK--------------QL 272 (343)
T ss_pred CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhH--------------hh
Confidence 3788888888777644 45544555666777777777777788888888775544322 11
Q ss_pred Hhc--cCCCHHHHHHHHHHHHHHh
Q psy18155 118 SAL--KDSDLNVRRVALVAFNSAA 139 (185)
Q Consensus 118 ~~l--~D~d~~Vr~~A~~~L~~~a 139 (185)
... .+++..+|..|...+...+
T Consensus 273 ~~~~~~~~h~~LRd~AA~ll~~i~ 296 (343)
T cd08050 273 CSRPPDDNHWALRDYAARLLAQIC 296 (343)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHH
Confidence 111 2567778888876655543
No 219
>KOG1993|consensus
Probab=20.63 E-value=1.8e+02 Score=29.43 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=0.0
Q ss_pred hHHHHHhhcccCCccchHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhh
Q psy18155 4 VVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAA 76 (185)
Q Consensus 4 vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~ 76 (185)
++|-+-.-=.+.+||+++|.|.+.++ +++.+.|..+..-++.+++..+
T Consensus 104 lisrIARlDyPreWP~Lf~~L~~~Lq-------------------------~~~~~gD~~~~~RiLi~l~~il 151 (978)
T KOG1993|consen 104 LISRIARLDYPREWPDLFPDLLGQLQ-------------------------SSLGTGDSLVQHRILITLHHIL 151 (978)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHHH-------------------------HhcccchHHHHHHHHHHHHHHH
No 220
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=20.07 E-value=4.2e+02 Score=22.07 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=38.1
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCc--hHHHhhHHHHHHhccCCCHHHHHHHHH
Q psy18155 56 ALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSID--PLLRQTIGDFLSALKDSDLNVRRVALV 133 (185)
Q Consensus 56 ~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr--~~L~~~m~~~l~~l~D~d~~Vr~~A~~ 133 (185)
+++|+|+.|-+.++.|.++. -|.+|+....+++.-. +.+...=..++.....++..||..|.-
T Consensus 1 Ll~d~d~~v~K~~I~~~~~i---------------y~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iK 65 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSI---------------YPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIK 65 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHH---------------HHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHH---------------HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 46889999999998888743 5666666621111000 011111136667776677889999984
Q ss_pred HHH
Q psy18155 134 AFN 136 (185)
Q Consensus 134 ~L~ 136 (185)
.+-
T Consensus 66 Fle 68 (239)
T PF11935_consen 66 FLE 68 (239)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
Done!