Query psy18155
Match_columns 185
No_of_seqs 113 out of 290
Neff 6.4
Searched_HMMs 29240
Date Sat Aug 17 00:00:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 99.8 2.8E-21 9.6E-26 188.3 8.5 173 1-174 947-1173(1230)
2 1u6g_C TIP120 protein, CAND1; 99.8 1.1E-20 3.6E-25 184.3 6.5 177 1-185 872-1080(1230)
3 4fdd_A Transportin-1; heat rep 99.3 2.2E-11 7.5E-16 114.7 10.9 156 2-157 107-304 (852)
4 1ibr_B P95, importin beta-1 su 98.6 2.1E-07 7.2E-12 79.7 11.6 145 15-159 124-328 (462)
5 2bpt_A Importin beta-1 subunit 98.6 5E-07 1.7E-11 83.5 13.3 157 2-158 112-330 (861)
6 2qk2_A LP04448P; mini spindles 98.5 4.8E-07 1.6E-11 73.0 9.4 112 47-158 55-182 (242)
7 2qk2_A LP04448P; mini spindles 98.4 2.7E-06 9.4E-11 68.5 12.0 121 15-141 52-206 (242)
8 4fdd_A Transportin-1; heat rep 98.4 6.4E-07 2.2E-11 84.2 9.3 112 46-157 357-488 (852)
9 1b3u_A Protein (protein phosph 98.4 1E-06 3.4E-11 77.8 9.9 154 2-157 143-329 (588)
10 3ltm_A Alpha-REP4; protein eng 98.3 2.2E-06 7.4E-11 67.1 8.5 125 2-139 36-171 (211)
11 1b3u_A Protein (protein phosph 98.3 3.1E-06 1.1E-10 74.7 9.9 139 2-140 220-392 (588)
12 1qgr_A Protein (importin beta 98.3 1E-05 3.5E-10 74.9 13.7 136 5-140 113-288 (876)
13 3ltm_A Alpha-REP4; protein eng 98.3 9.2E-06 3.1E-10 63.4 11.3 114 15-138 15-139 (211)
14 3ltj_A Alpharep-4; protein eng 98.2 1.6E-05 5.4E-10 61.6 11.8 124 2-138 31-165 (201)
15 3ltj_A Alpharep-4; protein eng 98.2 5.9E-06 2E-10 64.1 9.3 124 2-138 62-196 (201)
16 2bpt_A Importin beta-1 subunit 98.2 1.2E-05 4.1E-10 74.3 12.5 156 2-158 348-547 (861)
17 4hxt_A De novo protein OR329; 98.1 8.4E-05 2.9E-09 58.3 13.4 145 2-146 19-205 (252)
18 2jdq_A Importin alpha-1 subuni 98.1 3.3E-05 1.1E-09 66.0 11.7 156 2-157 167-366 (450)
19 4db6_A Armadillo repeat protei 98.1 3E-05 1E-09 60.1 10.3 118 2-141 29-168 (210)
20 1oyz_A Hypothetical protein YI 98.1 8.9E-06 3.1E-10 66.2 7.6 127 2-138 71-219 (280)
21 2jdq_A Importin alpha-1 subuni 98.1 4.1E-05 1.4E-09 65.4 11.8 144 2-145 82-268 (450)
22 4hxt_A De novo protein OR329; 98.0 5E-05 1.7E-09 59.6 11.2 143 2-144 61-245 (252)
23 1oyz_A Hypothetical protein YI 98.0 4.6E-05 1.6E-09 61.9 11.3 136 2-144 40-192 (280)
24 2qk1_A Protein STU2; STU2P, XM 98.0 4.5E-05 1.5E-09 62.8 10.5 145 8-157 21-196 (249)
25 2qk1_A Protein STU2; STU2P, XM 98.0 4.9E-05 1.7E-09 62.5 10.4 138 15-152 56-233 (249)
26 1wa5_B Importin alpha subunit; 98.0 7.8E-05 2.7E-09 66.2 12.2 156 2-157 190-388 (530)
27 1wa5_B Importin alpha subunit; 98.0 7.3E-05 2.5E-09 66.4 11.9 144 2-145 148-333 (530)
28 1qgr_A Protein (importin beta 97.9 9.5E-05 3.3E-09 68.4 12.8 156 2-158 345-555 (876)
29 1te4_A Conserved protein MTH18 97.9 3.2E-05 1.1E-09 56.8 7.0 60 15-74 8-68 (131)
30 2vgl_B AP-2 complex subunit be 97.9 4.1E-05 1.4E-09 69.8 9.0 156 2-157 103-288 (591)
31 1ibr_B P95, importin beta-1 su 97.8 0.00014 4.6E-09 62.1 11.3 156 2-157 54-264 (462)
32 4db6_A Armadillo repeat protei 97.8 0.00032 1.1E-08 54.1 12.0 122 15-157 8-147 (210)
33 4db8_A Armadillo-repeat protei 97.8 0.00035 1.2E-08 55.3 12.5 139 19-157 54-227 (252)
34 4b8j_A Importin subunit alpha- 97.8 0.0002 7E-09 63.2 12.2 145 2-146 135-321 (528)
35 4db8_A Armadillo-repeat protei 97.8 0.00011 3.7E-09 58.3 9.4 138 2-139 71-250 (252)
36 1w63_A Adapter-related protein 97.8 8.3E-05 2.8E-09 68.4 9.7 107 48-158 313-432 (618)
37 4b8j_A Importin subunit alpha- 97.7 0.00021 7.1E-09 63.2 10.4 156 2-157 177-376 (528)
38 1w63_A Adapter-related protein 97.6 4E-05 1.4E-09 70.5 4.9 158 2-160 124-362 (618)
39 2vgl_B AP-2 complex subunit be 97.3 0.0011 3.9E-08 60.2 10.6 123 16-144 46-193 (591)
40 1xqr_A HSPBP1 protein; armadil 97.2 0.0026 8.7E-08 53.8 10.6 127 19-145 81-243 (296)
41 3tpo_A Importin subunit alpha- 96.9 0.014 4.9E-07 52.0 13.1 156 2-157 179-382 (529)
42 2vgl_A Adaptor protein complex 96.9 0.0045 1.5E-07 57.1 9.9 134 16-155 71-231 (621)
43 3ul1_B Importin subunit alpha- 96.8 0.021 7.1E-07 50.8 13.0 126 19-144 100-265 (510)
44 1xqr_A HSPBP1 protein; armadil 96.7 0.011 3.7E-07 49.9 10.4 132 15-146 24-202 (296)
45 3ul1_B Importin subunit alpha- 96.7 0.014 5E-07 51.8 11.2 156 2-157 160-363 (510)
46 1wa5_C Importin alpha RE-expor 96.7 0.026 9E-07 53.9 13.7 143 2-158 102-293 (960)
47 2db0_A 253AA long hypothetical 96.6 0.016 5.5E-07 47.2 10.1 129 5-160 90-229 (253)
48 2db0_A 253AA long hypothetical 96.6 0.021 7.4E-07 46.5 10.7 112 52-163 36-196 (253)
49 1te4_A Conserved protein MTH18 96.6 0.0011 3.9E-08 48.3 3.0 99 2-136 29-129 (131)
50 2z6g_A B-catenin; FULL-length, 96.6 0.011 3.8E-07 55.7 10.1 159 2-162 460-686 (780)
51 3tpo_A Importin subunit alpha- 96.5 0.043 1.5E-06 48.8 13.0 126 19-144 119-284 (529)
52 3tjz_B Coatomer subunit gamma; 96.4 0.025 8.5E-07 49.3 10.6 113 18-159 67-187 (355)
53 3l9t_A Putative uncharacterize 95.9 0.07 2.4E-06 44.2 10.4 125 1-152 87-219 (240)
54 2z6g_A B-catenin; FULL-length, 95.7 0.017 5.8E-07 54.4 6.9 96 3-98 570-685 (780)
55 2x1g_F Cadmus; transport prote 95.4 0.059 2E-06 51.2 9.2 31 63-96 204-236 (971)
56 2vgl_A Adaptor protein complex 95.2 0.13 4.3E-06 47.4 10.5 110 45-157 326-450 (621)
57 1wa5_C Importin alpha RE-expor 95.0 0.31 1.1E-05 46.4 13.2 114 45-158 493-647 (960)
58 3tt9_A Plakophilin-2; cell adh 95.0 0.17 5.7E-06 41.3 9.7 108 18-148 7-135 (233)
59 2x19_B Importin-13; nuclear tr 95.0 0.036 1.2E-06 52.3 6.4 98 58-158 459-574 (963)
60 2x1g_F Cadmus; transport prote 94.9 0.057 1.9E-06 51.3 7.7 95 60-158 476-590 (971)
61 1jdh_A Beta-catenin; beta-cate 94.8 0.49 1.7E-05 40.8 12.9 76 3-78 78-173 (529)
62 1xm9_A Plakophilin 1; armadill 94.7 0.16 5.5E-06 44.5 9.6 99 20-141 3-117 (457)
63 1jdh_A Beta-catenin; beta-cate 94.6 0.24 8.3E-06 42.7 10.2 142 2-144 118-299 (529)
64 3ibv_A Exportin-T; karyopherin 94.3 0.29 9.9E-06 47.5 11.0 96 4-100 113-244 (980)
65 2of3_A ZYG-9; multifunctional 94.1 0.24 8.1E-06 41.4 8.8 109 18-152 131-248 (266)
66 3now_A UNC-45 protein, SD10334 94.1 0.64 2.2E-05 44.5 12.8 156 2-157 512-713 (810)
67 4ffb_C Protein STU2; tubulin f 93.9 1.1 3.8E-05 36.2 12.4 93 46-138 100-210 (278)
68 1xm9_A Plakophilin 1; armadill 93.8 0.91 3.1E-05 39.6 12.5 127 3-144 20-175 (457)
69 3l6x_A Catenin delta-1; cateni 93.5 0.41 1.4E-05 44.2 10.0 105 14-140 42-163 (584)
70 2z6h_A Catenin beta-1, beta-ca 93.5 1.1 3.8E-05 40.5 12.8 126 19-144 98-257 (644)
71 4ady_A RPN2, 26S proteasome re 93.5 0.75 2.6E-05 44.9 12.1 149 2-159 525-699 (963)
72 3m1i_C Exportin-1; heat repeat 93.3 0.24 8.4E-06 47.7 8.5 111 47-157 450-594 (1049)
73 4hat_C Exportin-1; heat repeat 93.3 0.34 1.2E-05 47.3 9.6 109 49-157 452-594 (1023)
74 3now_A UNC-45 protein, SD10334 93.3 0.28 9.7E-06 47.0 8.7 103 20-144 624-741 (810)
75 2iw3_A Elongation factor 3A; a 93.2 0.61 2.1E-05 45.7 11.1 140 19-158 95-300 (986)
76 3tjz_B Coatomer subunit gamma; 93.2 0.8 2.7E-05 39.6 10.8 77 21-101 106-188 (355)
77 3nmw_A APC variant protein; AR 92.7 0.97 3.3E-05 38.7 10.7 107 18-147 213-341 (354)
78 2z6h_A Catenin beta-1, beta-ca 92.6 0.87 3E-05 41.2 10.7 95 48-143 14-130 (644)
79 3l9t_A Putative uncharacterize 92.2 0.41 1.4E-05 39.6 7.2 99 1-99 120-235 (240)
80 3nmw_A APC variant protein; AR 92.1 4.8 0.00017 34.2 14.2 153 3-157 102-310 (354)
81 3l6x_A Catenin delta-1; cateni 92.0 1.3 4.3E-05 40.9 11.1 115 4-140 328-476 (584)
82 2x19_B Importin-13; nuclear tr 91.9 0.77 2.6E-05 43.2 9.7 35 124-158 583-618 (963)
83 2of3_A ZYG-9; multifunctional 91.4 0.1 3.4E-06 43.7 2.7 74 2-75 149-234 (266)
84 3grl_A General vesicular trans 91.0 0.95 3.2E-05 42.4 9.1 75 49-144 123-199 (651)
85 3b2a_A TON_1937, putative unch 89.9 4.7 0.00016 33.6 11.5 138 19-157 33-198 (265)
86 3nmz_A APC variant protein; pr 89.5 11 0.00037 33.4 14.6 152 4-157 219-426 (458)
87 2iw3_A Elongation factor 3A; a 89.1 3.1 0.00011 40.7 11.4 140 19-163 54-228 (986)
88 4ffb_C Protein STU2; tubulin f 88.3 0.61 2.1E-05 37.8 5.1 104 18-121 101-215 (278)
89 3a6p_A Exportin-5; exportin-5, 88.1 9.3 0.00032 37.7 14.2 97 61-157 260-401 (1204)
90 3nmz_A APC variant protein; pr 87.1 2.6 9E-05 37.4 8.8 74 48-144 379-454 (458)
91 3gs3_A Symplekin, LD45768P; he 87.0 6.5 0.00022 32.4 10.6 23 115-137 148-170 (257)
92 3m1i_C Exportin-1; heat repeat 86.6 1.8 6.2E-05 41.6 8.0 76 45-120 537-620 (1049)
93 4gmo_A Putative uncharacterize 86.5 1.4 4.8E-05 40.8 6.9 73 49-145 35-111 (684)
94 3gjx_A Exportin-1; transport, 86.3 2.4 8.2E-05 41.8 8.7 50 108-157 563-620 (1073)
95 3a6p_A Exportin-5; exportin-5, 85.5 2 6.9E-05 42.4 7.8 93 50-157 531-630 (1204)
96 4gmo_A Putative uncharacterize 83.1 22 0.00076 32.6 13.4 63 19-82 35-111 (684)
97 3ibv_A Exportin-T; karyopherin 82.6 0.85 2.9E-05 44.2 3.7 100 59-158 454-584 (980)
98 3o2t_A Symplekin; heat repeat, 82.3 12 0.00041 32.7 10.6 23 115-137 158-180 (386)
99 1lrv_A LRV, leucine-rich repea 82.2 0.45 1.5E-05 39.0 1.4 90 24-135 127-218 (244)
100 4ady_A RPN2, 26S proteasome re 81.7 3.9 0.00013 40.0 7.9 102 2-104 595-703 (963)
101 3oc3_A Helicase MOT1, MOT1; re 81.4 3.3 0.00011 39.0 6.9 30 46-75 297-326 (800)
102 1lrv_A LRV, leucine-rich repea 77.2 0.95 3.2E-05 37.0 1.8 91 22-134 101-193 (244)
103 3tt9_A Plakophilin-2; cell adh 75.1 12 0.00042 30.1 7.9 69 49-140 9-81 (233)
104 3b2a_A TON_1937, putative unch 73.8 15 0.00053 30.5 8.2 112 6-141 96-219 (265)
105 3opb_A SWI5-dependent HO expre 66.4 7.4 0.00025 37.1 5.4 26 115-140 701-728 (778)
106 3oc3_A Helicase MOT1, MOT1; re 65.8 5.9 0.0002 37.3 4.4 46 48-103 375-420 (800)
107 3opb_A SWI5-dependent HO expre 65.4 16 0.00055 34.8 7.5 87 48-149 606-692 (778)
108 3ldz_A STAM-1, signal transduc 63.8 31 0.0011 25.4 7.5 62 12-85 18-79 (140)
109 2x6h_A GH13170P, VPS34, phosph 59.1 6.1 0.00021 37.2 3.3 75 11-94 69-152 (696)
110 4hat_C Exportin-1; heat repeat 58.2 24 0.00082 34.4 7.5 55 45-99 537-599 (1023)
111 3o2t_A Symplekin; heat repeat, 58.2 78 0.0027 27.5 10.1 44 45-88 60-103 (386)
112 1x5b_A Signal transducing adap 57.3 43 0.0015 25.3 7.5 44 55-98 59-104 (163)
113 3gs3_A Symplekin, LD45768P; he 56.0 81 0.0028 25.7 10.8 57 45-105 50-106 (257)
114 3grl_A General vesicular trans 55.0 40 0.0014 31.5 8.1 123 16-148 18-159 (651)
115 1mhq_A ADP-ribosylation factor 53.4 62 0.0021 24.0 7.6 76 12-99 14-91 (148)
116 2b6c_A Hypothetical protein EF 48.3 51 0.0018 25.7 6.8 72 51-151 127-199 (220)
117 3g2s_A C-terminal fragment of 47.0 66 0.0022 24.0 6.9 73 15-99 27-101 (149)
118 1juq_A ADP-ribosylation factor 45.1 48 0.0017 25.3 6.0 45 55-99 57-103 (171)
119 3jxy_A Alkylpurine DNA glycosy 43.6 1.2E+02 0.004 23.8 9.3 73 52-152 135-207 (232)
120 1elk_A Target of MYB1; superhe 41.0 1.1E+02 0.0037 22.8 8.5 44 55-98 60-107 (157)
121 1dvp_A HRS, hepatocyte growth 39.5 1.2E+02 0.0042 23.5 7.8 58 15-84 21-78 (220)
122 1vsy_5 Proteasome activator BL 37.8 25 0.00085 34.3 3.9 91 53-157 848-943 (997)
123 3zyq_A Hepatocyte growth facto 35.4 1.4E+02 0.0049 23.4 7.6 62 13-86 22-83 (226)
124 3d3m_A Eukaryotic translation 32.9 68 0.0023 24.1 5.1 43 125-168 95-137 (168)
125 1lsh_A Lipovitellin (LV-1N, LV 32.4 1.4E+02 0.0048 29.0 8.2 100 5-137 419-540 (1056)
126 3gjx_A Exportin-1; transport, 30.3 1.5E+02 0.0051 29.1 8.0 38 45-82 563-600 (1073)
127 1t06_A Hypothetical protein; s 29.7 2E+02 0.007 22.5 8.5 75 53-151 113-191 (235)
128 3hhm_A Phosphatidylinositol-4, 27.8 62 0.0021 32.1 4.8 54 14-75 581-646 (1091)
129 3ls8_A Phosphatidylinositol 3- 27.6 49 0.0017 30.7 3.9 32 60-94 107-138 (614)
130 2y3a_A Phosphatidylinositol-4, 25.8 79 0.0027 31.3 5.2 32 60-94 637-668 (1092)
131 2wxf_A Phosphatidylinositol-4, 24.1 77 0.0026 30.8 4.7 16 60-75 484-499 (940)
132 1vsy_5 Proteasome activator BL 23.5 3.5E+02 0.012 26.2 9.3 31 113-143 845-877 (997)
133 1paq_A Translation initiation 23.2 2.5E+02 0.0085 21.4 8.3 43 125-168 106-150 (189)
134 3qml_C Protein SLS1, nucleotid 20.1 1.7E+02 0.0059 24.8 5.6 45 56-100 78-125 (315)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.84 E-value=2.8e-21 Score=188.34 Aligned_cols=173 Identities=50% Similarity=0.765 Sum_probs=153.7
Q ss_pred CchhHHHHHhhcccCCccchHHHHHHhhcCCCcccc------------cchhhhhHHHHhhHHHHHHhccCCChHHHHHH
Q psy18155 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMR------------TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVA 68 (185)
Q Consensus 1 ~r~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r------------~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~a 68 (185)
+|+++|+|+|++...+|.+++|+|.+.++++++.+| +++..+|.++.++++.|+.+++|+|..||+.|
T Consensus 947 ~r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a 1026 (1230)
T 1u6g_C 947 TRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVA 1026 (1230)
T ss_dssp HHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHH
T ss_pred hHHHHHHHHhhhhccChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 489999999999999999999999999999888887 33345667899999999999999999999999
Q ss_pred HHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch--------------------------H---------HHhhH
Q psy18155 69 LVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP--------------------------L---------LRQTI 113 (185)
Q Consensus 69 l~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~--------------------------~---------L~~~m 113 (185)
+.++++++|++|.++.++++++||.||+++..+++.||+ + +.+.+
T Consensus 1027 ~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~ 1106 (1230)
T 1u6g_C 1027 LVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL 1106 (1230)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHH
T ss_pred HHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999999986532 2 23334
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhh-------hhhhhhcchhhhhhccC
Q psy18155 114 GDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL-------YAETAVKKTLIREVEMG 174 (185)
Q Consensus 114 ~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~L-------y~et~vk~el~R~vdmg 174 (185)
..++.+++| |.++|..+|.++...++..|..+.++++++++++ .+++.+|||++|..|+.
T Consensus 1107 ~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~ 1173 (1230)
T 1u6g_C 1107 NHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELK 1173 (1230)
T ss_dssp HHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHH
T ss_pred HHHHcccCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHH
Confidence 577789988 5899999999999999999999999999999999 78899999999998874
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.81 E-value=1.1e-20 Score=184.27 Aligned_cols=177 Identities=44% Similarity=0.682 Sum_probs=140.9
Q ss_pred CchhHHHHHhhcccCCccchHHHHHHhhcCCCccccc-------------chhhhhHHHHhhHHHHHHhccCCChHHHHH
Q psy18155 1 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRT-------------TPQSIDPLLRQTIGDFLSALKDSDLNVRRV 67 (185)
Q Consensus 1 ~r~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~-------------~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~ 67 (185)
+|...+.++|.++..+|+.++|.+.+.+++. +..|. ....+..+...+.+.++..+.+.+..+|..
T Consensus 872 Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~ 950 (1230)
T 1u6g_C 872 VKSAASYALGSISVGNLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNV 950 (1230)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHH
T ss_pred HHHHHHHHhHHHhccCHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHH
Confidence 3777889999999999999999999999754 33341 122233345666677778888888899999
Q ss_pred HHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCC-------------------CchHHHhhHHHHHHhccCCCHHHH
Q psy18155 68 ALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQS-------------------IDPLLRQTIGDFLSALKDSDLNVR 128 (185)
Q Consensus 68 al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~-------------------vr~~L~~~m~~~l~~l~D~d~~Vr 128 (185)
+-.|+.......| +.++|.|-+...+.+.. ++..+.+.++.|+.+++|+|.+||
T Consensus 951 ~a~~lg~l~~~~~-------~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr 1023 (1230)
T 1u6g_C 951 VAECLGKLTLIDP-------ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVR 1023 (1230)
T ss_dssp HHHHHHHHHHSSG-------GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHH
T ss_pred HHHHHhhhhccCh-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHH
Confidence 9889988877766 34556555444433332 233455566788899999999999
Q ss_pred HHHHHHHHHHhhcChhhHHHhHhhHhhhhhhhhhhcchhhhhhccCCceeecCCCCC
Q psy18155 129 RVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLIREVEMGPFKHTVDDGLD 185 (185)
Q Consensus 129 ~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly~et~vk~el~R~vdmgPfkh~vDdGle 185 (185)
++|+.+|++++|++|.++.++++.++|.||+++.+++|++|+|+||||||+||||||
T Consensus 1024 ~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~ 1080 (1230)
T 1u6g_C 1024 RVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLD 1080 (1230)
T ss_dssp HHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHH
T ss_pred HHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHH
Confidence 999999999999999999999999999999999999999999999999999999985
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.25 E-value=2.2e-11 Score=114.65 Aligned_cols=156 Identities=22% Similarity=0.268 Sum_probs=123.5
Q ss_pred chhHHHHHhhc----ccCCccchHHHHHHhhcCCCccccc------------chhhhhH-----HHHhhHHHHHHhccCC
Q psy18155 2 RNVVAECLGKL----TLIDPSNLLPRLQESLKSNSALMRT------------TPQSIDP-----LLRQTIGDFLSALKDS 60 (185)
Q Consensus 2 r~vvae~lg~l----~~~~~~~~l~~L~~~l~~~~~~~r~------------~~~~~d~-----~L~~~i~~fl~~l~d~ 60 (185)
|+.+++|++.+ +...||+++|.|.+.++++++.+|. .+..++. .+..++|.|++.++|+
T Consensus 107 r~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~ 186 (852)
T 4fdd_A 107 RATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS 186 (852)
T ss_dssp HHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC
Confidence 66777777776 4678999999999999998887772 2222221 2677899999999999
Q ss_pred ChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch---------------HHHhhH----HHHHHhcc
Q psy18155 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP---------------LLRQTI----GDFLSALK 121 (185)
Q Consensus 61 d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~---------------~L~~~m----~~~l~~l~ 121 (185)
+..||..|+.+++.++...+..+..+++.+++.|++.+.++++.||. .+.+++ ..++..++
T Consensus 187 ~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~ 266 (852)
T 4fdd_A 187 SPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ 266 (852)
T ss_dssp SHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999998887865 223443 35667888
Q ss_pred CCCHHHHHHHHHHHHHHhhcC--hhhHHHhHhhHhhhh
Q psy18155 122 DSDLNVRRVALVAFNSAAHNK--PSLVIDLLDSVLPQL 157 (185)
Q Consensus 122 D~d~~Vr~~A~~~L~~~a~~~--p~lv~~~L~~llp~L 157 (185)
|++.+||..|+..+.+.+... ...+.+++++++|.+
T Consensus 267 ~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~l 304 (852)
T 4fdd_A 267 DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVL 304 (852)
T ss_dssp CSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 999999999998888876532 123556777777777
No 4
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.65 E-value=2.1e-07 Score=79.73 Aligned_cols=145 Identities=11% Similarity=0.130 Sum_probs=97.5
Q ss_pred CCccchHHHHHHhhcCC--Cccccc------------c-hhhhhHHHHhhHHHHHHhccCC--ChHHHHHHHHHHHHhhh
Q psy18155 15 IDPSNLLPRLQESLKSN--SALMRT------------T-PQSIDPLLRQTIGDFLSALKDS--DLNVRRVALVAFNSAAH 77 (185)
Q Consensus 15 ~~~~~~l~~L~~~l~~~--~~~~r~------------~-~~~~d~~L~~~i~~fl~~l~d~--d~~vR~~al~~ln~~~~ 77 (185)
..||+++|.|.+.++++ ++.+|. . +..++.++..+++.|+..++|+ +..||..|+.++..++.
T Consensus 124 ~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 48999999999999988 777771 1 2223446777889999999998 79999999999987653
Q ss_pred cCchhhHH--hHHhHHHHHHHHhhcCCCCCchH-------------------HH-hhHHHHHHhccCCCHHHHHHHHHHH
Q psy18155 78 NKPSLVID--LLDSVLPQLYAETAVKPQSIDPL-------------------LR-QTIGDFLSALKDSDLNVRRVALVAF 135 (185)
Q Consensus 78 ~kp~ll~~--~l~~~Lp~L~~~t~~~~~~vr~~-------------------L~-~~m~~~l~~l~D~d~~Vr~~A~~~L 135 (185)
.-...... ..+.+++.|.+...+.++.+|.. +. ..+..++..++|.+.+||..|+..+
T Consensus 204 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (462)
T ss_dssp TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 21111100 11225777777776666656541 11 2234555677899999999999777
Q ss_pred HHHhhcC---------------------hhhHHHhHhhHhhhhhh
Q psy18155 136 NSAAHNK---------------------PSLVIDLLDSVLPQLYA 159 (185)
Q Consensus 136 ~~~a~~~---------------------p~lv~~~L~~llp~Ly~ 159 (185)
...+... ...+.++++.++|.+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~ 328 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHH
Confidence 7665432 12455677888887743
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.59 E-value=5e-07 Score=83.52 Aligned_cols=157 Identities=9% Similarity=0.131 Sum_probs=106.5
Q ss_pred chhHHHHHhhcc----c-CCccchHHHHHHhhcCC-Ccccccch------------hh---hhHHHHhhHHHHHHhccCC
Q psy18155 2 RNVVAECLGKLT----L-IDPSNLLPRLQESLKSN-SALMRTTP------------QS---IDPLLRQTIGDFLSALKDS 60 (185)
Q Consensus 2 r~vvae~lg~l~----~-~~~~~~l~~L~~~l~~~-~~~~r~~~------------~~---~d~~L~~~i~~fl~~l~d~ 60 (185)
|+.++.+++.++ . ..||+++|.|.+.++++ ++.+|..+ .. ++.+...+++.|+..+.|+
T Consensus 112 r~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~ 191 (861)
T 2bpt_A 112 ANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQST 191 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 566666666643 3 48999999999999987 77777211 11 3446777888888999998
Q ss_pred --ChHHHHHHHHHHHHhhhcCchhhH--HhHHhHHHHHHHHhhcCCCCCch---------------HHHhh-----HHHH
Q psy18155 61 --DLNVRRVALVAFNSAAHNKPSLVI--DLLDSVLPQLYAETAVKPQSIDP---------------LLRQT-----IGDF 116 (185)
Q Consensus 61 --d~~vR~~al~~ln~~~~~kp~ll~--~~l~~~Lp~L~~~t~~~~~~vr~---------------~L~~~-----m~~~ 116 (185)
+..||..|+.++...+..-...+. ...+.+++.|++.+.+.+..+|. .+.++ +..+
T Consensus 192 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~ 271 (861)
T 2bpt_A 192 ETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALT 271 (861)
T ss_dssp CCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999876532111110 01234778888777766666654 11222 2345
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhhc-----------------ChhhHHHhHhhHhhhhh
Q psy18155 117 LSALKDSDLNVRRVALVAFNSAAHN-----------------KPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 117 l~~l~D~d~~Vr~~A~~~L~~~a~~-----------------~p~lv~~~L~~llp~Ly 158 (185)
+..++|.+.+||..|+..+...+.. .+..+.+++..++|.+.
T Consensus 272 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll 330 (861)
T 2bpt_A 272 IATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL 330 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence 5678899999999999887776554 33456677788888874
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.51 E-value=4.8e-07 Score=72.99 Aligned_cols=112 Identities=15% Similarity=0.199 Sum_probs=89.8
Q ss_pred HhhHHHHHHhc-cCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHH-------------Hhh
Q psy18155 47 RQTIGDFLSAL-KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLL-------------RQT 112 (185)
Q Consensus 47 ~~~i~~fl~~l-~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L-------------~~~ 112 (185)
..+++.+...+ +|++..||..|+.++...+..-...+..++..++|.|++...+++..||... ...
T Consensus 55 ~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~l 134 (242)
T 2qk2_A 55 GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQ 134 (242)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34566677888 5999999999999999888665567789999999999999999988887621 223
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHH-hhcChh-hHHHhHhhHhhhhh
Q psy18155 113 IGDFLSALKDSDLNVRRVALVAFNSA-AHNKPS-LVIDLLDSVLPQLY 158 (185)
Q Consensus 113 m~~~l~~l~D~d~~Vr~~A~~~L~~~-a~~~p~-lv~~~L~~llp~Ly 158 (185)
+..++..+++.+..||..++..+... .+..|. ...++++.++|.|.
T Consensus 135 l~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~ 182 (242)
T 2qk2_A 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV 182 (242)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 45777889899999999999999995 444465 45788888888883
No 7
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.43 E-value=2.7e-06 Score=68.48 Aligned_cols=121 Identities=14% Similarity=0.197 Sum_probs=88.6
Q ss_pred CCccchHHHHHHhhc-CCCcccc------------cchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCch
Q psy18155 15 IDPSNLLPRLQESLK-SNSALMR------------TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS 81 (185)
Q Consensus 15 ~~~~~~l~~L~~~l~-~~~~~~r------------~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ 81 (185)
.+..++++.|.+.+. +++..+| .....+..+...++|.++..++|++..||..|..++..++.+-+
T Consensus 52 ~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~- 130 (242)
T 2qk2_A 52 GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS- 130 (242)
T ss_dssp CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-
Confidence 345688899999994 8887776 11112334677889999999999999999999999988876543
Q ss_pred hhHHhHHhHHHHHHHHhhcCCCCCch---------------------HHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhh
Q psy18155 82 LVIDLLDSVLPQLYAETAVKPQSIDP---------------------LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAH 140 (185)
Q Consensus 82 ll~~~l~~~Lp~L~~~t~~~~~~vr~---------------------~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~ 140 (185)
++.++|.|.....+++..+|. .+...+..+...++|.+.+||..|..++...+.
T Consensus 131 -----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 131 -----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp -----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 566777777776666555543 222334566779999999999999988888654
Q ss_pred c
Q psy18155 141 N 141 (185)
Q Consensus 141 ~ 141 (185)
.
T Consensus 206 ~ 206 (242)
T 2qk2_A 206 L 206 (242)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.42 E-value=6.4e-07 Score=84.21 Aligned_cols=112 Identities=18% Similarity=0.241 Sum_probs=92.4
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch------------------
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP------------------ 107 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~------------------ 107 (185)
+..++|.+...++|++..+|..|+.++...+.+-+..+.++++.++|.|+....|++..||.
T Consensus 357 ~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 436 (852)
T 4fdd_A 357 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP 436 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH
Confidence 45566666688999999999999999999988888888889999999999999998888875
Q ss_pred --HHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhh
Q psy18155 108 --LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 108 --~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~L 157 (185)
.+.+.+..++..++|++..||..|+.+|...+...+..+.++++.+++.|
T Consensus 437 ~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L 488 (852)
T 4fdd_A 437 DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTL 488 (852)
T ss_dssp TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHH
Confidence 12333456777888999999999999998877665555778888888887
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.42 E-value=1e-06 Score=77.80 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=104.6
Q ss_pred chhHHHHHhhccc----CCccchHHHHHHhhcCCCcccccch-hhhhH---------HHHhhHHHHHHhccCCChHHHHH
Q psy18155 2 RNVVAECLGKLTL----IDPSNLLPRLQESLKSNSALMRTTP-QSIDP---------LLRQTIGDFLSALKDSDLNVRRV 67 (185)
Q Consensus 2 r~vvae~lg~l~~----~~~~~~l~~L~~~l~~~~~~~r~~~-~~~d~---------~L~~~i~~fl~~l~d~d~~vR~~ 67 (185)
|..++.++|.+.. ..+++++|.+.++++++++.+|..+ ..+.. +...++|.|+.+++|++..||..
T Consensus 143 R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~ 222 (588)
T 1b3u_A 143 RTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLL 222 (588)
T ss_dssp HHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHH
Confidence 3344445554432 2356788989899899999988332 22211 24567888999999999999999
Q ss_pred HHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHH-----------------hhHHHHHHhccCCCHHHHHH
Q psy18155 68 ALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLR-----------------QTIGDFLSALKDSDLNVRRV 130 (185)
Q Consensus 68 al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~-----------------~~m~~~l~~l~D~d~~Vr~~ 130 (185)
|+.++...+..-+. ....+.++|.+.+...+++..||.... ..+..++..++|++.+||..
T Consensus 223 a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 300 (588)
T 1b3u_A 223 AVEACVNIAQLLPQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAA 300 (588)
T ss_dssp HHHHHHHHHHHSCH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHhCCH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHH
Confidence 99999887765443 234466888888888887777765211 12345667888999999999
Q ss_pred HHHHHHHHhhcChhhHH--HhHhhHhhhh
Q psy18155 131 ALVAFNSAAHNKPSLVI--DLLDSVLPQL 157 (185)
Q Consensus 131 A~~~L~~~a~~~p~lv~--~~L~~llp~L 157 (185)
|+.+|...+...+.-.. .+++.++|.+
T Consensus 301 a~~~l~~~~~~~~~~~~~~~~~~~l~p~l 329 (588)
T 1b3u_A 301 ASHKVKEFCENLSADCRENVIMSQILPCI 329 (588)
T ss_dssp HHHHHHHHHHTSCTTTHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhChhhhhhHHHHHHHHHH
Confidence 99999887765443221 3445555544
No 10
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.31 E-value=2.2e-06 Score=67.10 Aligned_cols=125 Identities=24% Similarity=0.260 Sum_probs=90.9
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhhcCCCcccccchhhh-hHH-HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcC
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSI-DPL-LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNK 79 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~~-d~~-L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~k 79 (185)
|...+++||+++- ++.+|.|.++++++++.+|..+... -.+ -...++.++.+++|+|..||..|+.++.....
T Consensus 36 R~~A~~~L~~~~~---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-- 110 (211)
T 3ltm_A 36 RRAAAYALGKIGD---ERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD-- 110 (211)
T ss_dssp HHHHHHHHHHHCC---GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhCC---ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--
Confidence 5667788888775 6899999999999998888444321 111 12357788899999999999999988875532
Q ss_pred chhhHHhHHhHHHHHHHHhhcCCCCCchHHHh---------hHHHHHHhccCCCHHHHHHHHHHHHHHh
Q psy18155 80 PSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQ---------TIGDFLSALKDSDLNVRRVALVAFNSAA 139 (185)
Q Consensus 80 p~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~---------~m~~~l~~l~D~d~~Vr~~A~~~L~~~a 139 (185)
+..+|.|.+...+++..||..-.. .+..+...++|++..||..|+.+|....
T Consensus 111 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 111 --------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 235666777777777777652221 2346777888999999999999988863
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.29 E-value=3.1e-06 Score=74.65 Aligned_cols=139 Identities=18% Similarity=0.228 Sum_probs=94.5
Q ss_pred chhHHHHHhhcccCCc-----cchHHHHHHhhcCCCcccccchh-hhhH---------HHHhhHHHHHHhccCCChHHHH
Q psy18155 2 RNVVAECLGKLTLIDP-----SNLLPRLQESLKSNSALMRTTPQ-SIDP---------LLRQTIGDFLSALKDSDLNVRR 66 (185)
Q Consensus 2 r~vvae~lg~l~~~~~-----~~~l~~L~~~l~~~~~~~r~~~~-~~d~---------~L~~~i~~fl~~l~d~d~~vR~ 66 (185)
|....+++|.++-... +.++|.+.+++++++..+|..+. .+.. +...++|.|+.+++|++..||+
T Consensus 220 r~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 299 (588)
T 1b3u_A 220 RLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRA 299 (588)
T ss_dssp HTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHH
Confidence 4455666666654322 34677777777776766662221 1111 2345688888999999999999
Q ss_pred HHHHHHHHhhhcCchhhH--HhHHhHHHHHHHHhhcCCCCCchHH-------H---------hh-HHHHHHhccCCCHHH
Q psy18155 67 VALVAFNSAAHNKPSLVI--DLLDSVLPQLYAETAVKPQSIDPLL-------R---------QT-IGDFLSALKDSDLNV 127 (185)
Q Consensus 67 ~al~~ln~~~~~kp~ll~--~~l~~~Lp~L~~~t~~~~~~vr~~L-------~---------~~-m~~~l~~l~D~d~~V 127 (185)
.|..++..++..-+.-.. .+++.++|.+.+...+.+..||... . +. +..++..++|++.+|
T Consensus 300 ~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~V 379 (588)
T 1b3u_A 300 AASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEV 379 (588)
T ss_dssp HHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHH
T ss_pred HHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHH
Confidence 999999888766554333 5678899999988888877776521 1 11 234667888999999
Q ss_pred HHHHHHHHHHHhh
Q psy18155 128 RRVALVAFNSAAH 140 (185)
Q Consensus 128 r~~A~~~L~~~a~ 140 (185)
|..|+.++.....
T Consensus 380 r~~a~~~l~~l~~ 392 (588)
T 1b3u_A 380 RLNIISNLDCVNE 392 (588)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999977666543
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.28 E-value=1e-05 Score=74.91 Aligned_cols=136 Identities=11% Similarity=0.112 Sum_probs=90.1
Q ss_pred HHHHHhhccc-CCccchHHHHHHhhcCC--Ccccccc-------------hhhhhHHHHhhHHHHHHhccCC--ChHHHH
Q psy18155 5 VAECLGKLTL-IDPSNLLPRLQESLKSN--SALMRTT-------------PQSIDPLLRQTIGDFLSALKDS--DLNVRR 66 (185)
Q Consensus 5 vae~lg~l~~-~~~~~~l~~L~~~l~~~--~~~~r~~-------------~~~~d~~L~~~i~~fl~~l~d~--d~~vR~ 66 (185)
++++....+. ..||+++|.|.+.++++ ++.+|.. +..+..++..+++.|++.++++ +..+|.
T Consensus 113 l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~ 192 (876)
T 1qgr_A 113 VAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKL 192 (876)
T ss_dssp HHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHH
T ss_pred HHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 4444444444 78999999999999988 7777621 1112334667778888889988 789999
Q ss_pred HHHHHHHHhhhcCchhhHHh--HHhHHHHHHHHhhcCCCCCch---------------HHHhh-----HHHHHHhccCCC
Q psy18155 67 VALVAFNSAAHNKPSLVIDL--LDSVLPQLYAETAVKPQSIDP---------------LLRQT-----IGDFLSALKDSD 124 (185)
Q Consensus 67 ~al~~ln~~~~~kp~ll~~~--l~~~Lp~L~~~t~~~~~~vr~---------------~L~~~-----m~~~l~~l~D~d 124 (185)
.|+.+++..+..-+..+... .+.+++.+++.+.+.++.+|. .+.++ +..++..++|++
T Consensus 193 ~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (876)
T 1qgr_A 193 AATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI 272 (876)
T ss_dssp HHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999987764322111100 123788888777666665654 11222 234556677889
Q ss_pred HHHHHHHHHHHHHHhh
Q psy18155 125 LNVRRVALVAFNSAAH 140 (185)
Q Consensus 125 ~~Vr~~A~~~L~~~a~ 140 (185)
.+||..|+..+...+.
T Consensus 273 ~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 273 DEVALQGIEFWSNVCD 288 (876)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999977666554
No 13
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.27 E-value=9.2e-06 Score=63.45 Aligned_cols=114 Identities=20% Similarity=0.220 Sum_probs=77.6
Q ss_pred CCccchHHHHHHhhcCCCcccccchhhh-hHHH-HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHH
Q psy18155 15 IDPSNLLPRLQESLKSNSALMRTTPQSI-DPLL-RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLP 92 (185)
Q Consensus 15 ~~~~~~l~~L~~~l~~~~~~~r~~~~~~-d~~L-~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp 92 (185)
..-++.++.|.+.++++++.+|..+... -.+- ...++.++.+++|+|..||..|+.++..... ...+|
T Consensus 15 ~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~ 84 (211)
T 3ltm_A 15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVE 84 (211)
T ss_dssp -CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHH
T ss_pred hcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHH
Confidence 3457888999999998888888443311 1111 2467788899999999999999888765421 23556
Q ss_pred HHHHHhhcCCCCCchHHHh---------hHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 93 QLYAETAVKPQSIDPLLRQ---------TIGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 93 ~L~~~t~~~~~~vr~~L~~---------~m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
.|.+...+++..||..-.. .+..++..++|++..||..|+.+|...
T Consensus 85 ~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 85 PLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 6666666766666652211 234666788889999999999887775
No 14
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.24 E-value=1.6e-05 Score=61.64 Aligned_cols=124 Identities=24% Similarity=0.253 Sum_probs=89.0
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhhcCCCcccccchhhhhHHH--HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcC
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLL--RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNK 79 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L--~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~k 79 (185)
|...+++||+++- ++.++.|.++++++++.+|..+...=..+ ...++.++.+++|++..||..|+.++.....
T Consensus 31 r~~A~~~L~~~~~---~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 105 (201)
T 3ltj_A 31 RRAAAYALGKIGD---ERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD-- 105 (201)
T ss_dssp HHHHHHHHHHHCC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHhcCC---hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--
Confidence 5667788888774 57899999999988888885443211111 2357788899999999999999888865422
Q ss_pred chhhHHhHHhHHHHHHHHhhcCCCCCchHHHhh---------HHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 80 PSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQT---------IGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 80 p~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~---------m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
+..++.|.+...+++..||...... +..+...++|++..||..|+.+|...
T Consensus 106 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 106 --------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 2356666666677777776532222 23567788899999999999998886
No 15
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.23 E-value=5.9e-06 Score=64.09 Aligned_cols=124 Identities=17% Similarity=0.224 Sum_probs=89.0
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhhcCCCcccccchhh-hhHHH-HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcC
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQS-IDPLL-RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNK 79 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~-~d~~L-~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~k 79 (185)
|..+++.||+++ .++.++.|.++++++++.+|..+.. +-.+- ...++.++.+++|++..||..|+.++.....
T Consensus 62 r~~a~~~L~~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 62 RRAAADALGQIG---DERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp HHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhhC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 566778888876 4689999999999999988844432 21111 2267788899999999999999888865522
Q ss_pred chhhHHhHHhHHHHHHHHhhcCCCCCchHHHhh---------HHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 80 PSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQT---------IGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 80 p~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~---------m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
...+|.|.+...+++..||...... +..+...++|++..||..|..+|...
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3466677777777776776522222 23556677889999999999888764
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.21 E-value=1.2e-05 Score=74.29 Aligned_cols=156 Identities=13% Similarity=0.168 Sum_probs=103.4
Q ss_pred chhHHHHHhhcccCC----ccchHHHHHHhhcCCCcccccc-------------hhhhhHHHHhhHHHHHHhccCCChHH
Q psy18155 2 RNVVAECLGKLTLID----PSNLLPRLQESLKSNSALMRTT-------------PQSIDPLLRQTIGDFLSALKDSDLNV 64 (185)
Q Consensus 2 r~vvae~lg~l~~~~----~~~~l~~L~~~l~~~~~~~r~~-------------~~~~d~~L~~~i~~fl~~l~d~d~~v 64 (185)
|..+++|++.++..- .+.++|.+.+.+++++...|.. +..+..++..++|.++..++|++..|
T Consensus 348 r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~v 427 (861)
T 2bpt_A 348 SMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQV 427 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 455667776665422 3456677777777777666621 13344467788898999999999999
Q ss_pred HHHHHHHHHHhhhcCchhh--HHhHHhHHHHHHHHhhcCCCCCch-------------------HHHhh----HHHHHHh
Q psy18155 65 RRVALVAFNSAAHNKPSLV--IDLLDSVLPQLYAETAVKPQSIDP-------------------LLRQT----IGDFLSA 119 (185)
Q Consensus 65 R~~al~~ln~~~~~kp~ll--~~~l~~~Lp~L~~~t~~~~~~vr~-------------------~L~~~----m~~~l~~ 119 (185)
|..|+.++...+...+.-+ ..+++.++|.|++...++ ..|+. .+.|+ +..++..
T Consensus 428 r~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~ 506 (861)
T 2bpt_A 428 KETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGA 506 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 9999888876654322211 456777888887776654 22321 12233 3344455
Q ss_pred cc--CCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhh
Q psy18155 120 LK--DSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 120 l~--D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly 158 (185)
++ |.+..||..|+.++...+...+.-+.+++++++|.+.
T Consensus 507 l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~ 547 (861)
T 2bpt_A 507 ANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVM 547 (861)
T ss_dssp HTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHH
T ss_pred HhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHH
Confidence 55 4447899999999999877777667788888888774
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.09 E-value=8.4e-05 Score=58.34 Aligned_cols=145 Identities=15% Similarity=0.169 Sum_probs=103.9
Q ss_pred chhHHHHHhhcccCCc--------cchHHHHHHhhcCCCcccccchh------------hhhHHH-HhhHHHHHHhccCC
Q psy18155 2 RNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTPQ------------SIDPLL-RQTIGDFLSALKDS 60 (185)
Q Consensus 2 r~vvae~lg~l~~~~~--------~~~l~~L~~~l~~~~~~~r~~~~------------~~d~~L-~~~i~~fl~~l~d~ 60 (185)
|.-.+.+++.++..++ ..++|.|.++++++++.+|..+. .-+.+. ...++.++.+++++
T Consensus 19 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~ 98 (252)
T 4hxt_A 19 QKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST 98 (252)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC
Confidence 4456778888877665 36899999999998887772211 111111 24688999999999
Q ss_pred ChHHHHHHHHHHHHhhhcCchhhHHhHHh-HHHHHHHHhhcCCCCCchH----H---------------H-hhHHHHHHh
Q psy18155 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDS-VLPQLYAETAVKPQSIDPL----L---------------R-QTIGDFLSA 119 (185)
Q Consensus 61 d~~vR~~al~~ln~~~~~kp~ll~~~l~~-~Lp~L~~~t~~~~~~vr~~----L---------------~-~~m~~~l~~ 119 (185)
+..+|+.|+.++.......+......++. .+|.|.+.....++.++.. | . ..+..++..
T Consensus 99 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 178 (252)
T 4hxt_A 99 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 178 (252)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHH
Confidence 99999999999988886666655544443 7888888887776655430 0 0 013466778
Q ss_pred ccCCCHHHHHHHHHHHHHHhhcChhhH
Q psy18155 120 LKDSDLNVRRVALVAFNSAAHNKPSLV 146 (185)
Q Consensus 120 l~D~d~~Vr~~A~~~L~~~a~~~p~lv 146 (185)
+++++.++|..|+.+|...+...+...
T Consensus 179 l~~~~~~v~~~a~~~L~~l~~~~~~~~ 205 (252)
T 4hxt_A 179 LTSTDSEVQKEAARALANIASGPTSAI 205 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSBHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 888999999999999999887666644
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.08 E-value=3.3e-05 Score=66.01 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=107.8
Q ss_pred chhHHHHHhhcccCC-c-------cchHHHHHHhhcCCCcccccch-hhh-----------hHH-HHhhHHHHHHhccCC
Q psy18155 2 RNVVAECLGKLTLID-P-------SNLLPRLQESLKSNSALMRTTP-QSI-----------DPL-LRQTIGDFLSALKDS 60 (185)
Q Consensus 2 r~vvae~lg~l~~~~-~-------~~~l~~L~~~l~~~~~~~r~~~-~~~-----------d~~-L~~~i~~fl~~l~d~ 60 (185)
|..+++++|.++-.. + ..++|.|.++++++++.+|..+ ..+ ..+ -...+|.++.+++++
T Consensus 167 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 246 (450)
T 2jdq_A 167 TRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN 246 (450)
T ss_dssp HHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC
Confidence 566788899888544 2 4789999999998887777221 111 111 235789999999999
Q ss_pred ChHHHHHHHHHHHHhhhcCchhhHHhHH-hHHHHHHHHhhcCCCCCch-------------------HHH-hhHHHHHHh
Q psy18155 61 DLNVRRVALVAFNSAAHNKPSLVIDLLD-SVLPQLYAETAVKPQSIDP-------------------LLR-QTIGDFLSA 119 (185)
Q Consensus 61 d~~vR~~al~~ln~~~~~kp~ll~~~l~-~~Lp~L~~~t~~~~~~vr~-------------------~L~-~~m~~~l~~ 119 (185)
+..+|..|+.++.....+.+......++ .++|.|.+.....+..++. ++. ..+..++..
T Consensus 247 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 326 (450)
T 2jdq_A 247 DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISI 326 (450)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 9999999999998888777765554454 4888888888776655543 111 123466677
Q ss_pred ccCCCHHHHHHHHHHHHHHhhc-ChhhHHHhHh-hHhhhh
Q psy18155 120 LKDSDLNVRRVALVAFNSAAHN-KPSLVIDLLD-SVLPQL 157 (185)
Q Consensus 120 l~D~d~~Vr~~A~~~L~~~a~~-~p~lv~~~L~-~llp~L 157 (185)
++|++.+||+.|+.+|...+.. .|..+...++ .++|.|
T Consensus 327 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L 366 (450)
T 2jdq_A 327 LQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPL 366 (450)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence 8888999999999999887754 4554433332 344544
No 19
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.07 E-value=3e-05 Score=60.07 Aligned_cols=118 Identities=17% Similarity=0.233 Sum_probs=74.3
Q ss_pred chhHHHHHhhcccCCcc--------chHHHHHHhhcCCCcccccchh------------hhhHHH-HhhHHHHHHhccCC
Q psy18155 2 RNVVAECLGKLTLIDPS--------NLLPRLQESLKSNSALMRTTPQ------------SIDPLL-RQTIGDFLSALKDS 60 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~--------~~l~~L~~~l~~~~~~~r~~~~------------~~d~~L-~~~i~~fl~~l~d~ 60 (185)
|.-.+.+|+.++..+.. .++|.|.++++++++.+|..+. ..+.+. ...+|.++.+++++
T Consensus 29 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~ 108 (210)
T 4db6_A 29 LQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 108 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC
Confidence 44567788888755433 4789999999998888772211 111111 23689999999999
Q ss_pred ChHHHHHHHHHHHHhhhcCchhhHHhHHh-HHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHh
Q psy18155 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDS-VLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAA 139 (185)
Q Consensus 61 d~~vR~~al~~ln~~~~~kp~ll~~~l~~-~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a 139 (185)
+..+|+.|..++.....+.+......++. ++|. ++..+++++.+++..|+.+|...+
T Consensus 109 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~----------------------L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 109 NEQILQEALWALSNIASGGNEQIQAVIDAGALPA----------------------LVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH----------------------HHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHH----------------------HHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999987765444433222222 3444 444444455555555555555554
Q ss_pred hc
Q psy18155 140 HN 141 (185)
Q Consensus 140 ~~ 141 (185)
..
T Consensus 167 ~~ 168 (210)
T 4db6_A 167 SG 168 (210)
T ss_dssp TS
T ss_pred cC
Confidence 43
No 20
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.07 E-value=8.9e-06 Score=66.23 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=66.1
Q ss_pred chhHHHHHhhcccC--CccchHHHHHH-hhcCCCcccccchhhhhHH--------HHhhHHHHHHhccCCChHHHHHHHH
Q psy18155 2 RNVVAECLGKLTLI--DPSNLLPRLQE-SLKSNSALMRTTPQSIDPL--------LRQTIGDFLSALKDSDLNVRRVALV 70 (185)
Q Consensus 2 r~vvae~lg~l~~~--~~~~~l~~L~~-~l~~~~~~~r~~~~~~d~~--------L~~~i~~fl~~l~d~d~~vR~~al~ 70 (185)
|...+++||+++.. ..+.+++.|.+ +++++++.+|..+...=.. -...++.++.+++|++..||..|+.
T Consensus 71 R~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~ 150 (280)
T 1oyz_A 71 RDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAF 150 (280)
T ss_dssp HHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 55566777777642 23556666663 3456666666332211111 1234555666677777777777766
Q ss_pred HHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHH-----------HhhHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 71 AFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLL-----------RQTIGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 71 ~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L-----------~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
++..... +..+|.|.+...+++..||..- ...+..+...++|++..||..|+.+|...
T Consensus 151 aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 151 AISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp HHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 6643321 1244555555555555554311 01123455566666777777777666554
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.05 E-value=4.1e-05 Score=65.42 Aligned_cols=144 Identities=17% Similarity=0.122 Sum_probs=102.2
Q ss_pred chhHHHHHhhcccCC--------ccchHHHHHHhhcCCCcccccchh------------hhhHHH-HhhHHHHHHhccC-
Q psy18155 2 RNVVAECLGKLTLID--------PSNLLPRLQESLKSNSALMRTTPQ------------SIDPLL-RQTIGDFLSALKD- 59 (185)
Q Consensus 2 r~vvae~lg~l~~~~--------~~~~l~~L~~~l~~~~~~~r~~~~------------~~d~~L-~~~i~~fl~~l~d- 59 (185)
|.-++.+++.++..+ ...++|.|.++++++++.+|..+. .-+.++ ...++.++.++++
T Consensus 82 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~ 161 (450)
T 2jdq_A 82 QFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ 161 (450)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 445678888877643 257999999999999888882221 111112 2568899999995
Q ss_pred CChHHHHHHHHHHHHhhhcC-chhhHHhHHhHHHHHHHHhhcCCCCCchH----H----------------HhhHHHHHH
Q psy18155 60 SDLNVRRVALVAFNSAAHNK-PSLVIDLLDSVLPQLYAETAVKPQSIDPL----L----------------RQTIGDFLS 118 (185)
Q Consensus 60 ~d~~vR~~al~~ln~~~~~k-p~ll~~~l~~~Lp~L~~~t~~~~~~vr~~----L----------------~~~m~~~l~ 118 (185)
++..+|+.|+.++.....+. |..-......++|.|.+.....++.++.. | ...+..++.
T Consensus 162 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 241 (450)
T 2jdq_A 162 NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241 (450)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHH
Confidence 79999999999998887665 55444445677888887777665544320 0 012456778
Q ss_pred hccCCCHHHHHHHHHHHHHHhhcChhh
Q psy18155 119 ALKDSDLNVRRVALVAFNSAAHNKPSL 145 (185)
Q Consensus 119 ~l~D~d~~Vr~~A~~~L~~~a~~~p~l 145 (185)
.+++++.+||..|+.+|...+...+..
T Consensus 242 ll~~~~~~v~~~a~~~L~~l~~~~~~~ 268 (450)
T 2jdq_A 242 LLMHNDYKVVSPALRAVGNIVTGDDIQ 268 (450)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCchhHHHHHHHHHHHHhhCChHH
Confidence 888899999999999999988776653
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.04 E-value=5e-05 Score=59.62 Aligned_cols=143 Identities=14% Similarity=0.131 Sum_probs=102.4
Q ss_pred chhHHHHHhhcccCCcc--------chHHHHHHhhcCCCcccccchhh------------hhHHH-HhhHHHHHHhccCC
Q psy18155 2 RNVVAECLGKLTLIDPS--------NLLPRLQESLKSNSALMRTTPQS------------IDPLL-RQTIGDFLSALKDS 60 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~--------~~l~~L~~~l~~~~~~~r~~~~~------------~d~~L-~~~i~~fl~~l~d~ 60 (185)
|..++.+|+.++..+.. ..+|.|.++++++++.+|..+.. -..+. ...++.++.+++++
T Consensus 61 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~ 140 (252)
T 4hxt_A 61 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST 140 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC
Confidence 45677888888876443 58999999999988888722211 11111 24688899999999
Q ss_pred ChHHHHHHHHHHHHhhhcCchhhHHhHH-hHHHHHHHHhhcCCCCCchH----H---------------Hh-hHHHHHHh
Q psy18155 61 DLNVRRVALVAFNSAAHNKPSLVIDLLD-SVLPQLYAETAVKPQSIDPL----L---------------RQ-TIGDFLSA 119 (185)
Q Consensus 61 d~~vR~~al~~ln~~~~~kp~ll~~~l~-~~Lp~L~~~t~~~~~~vr~~----L---------------~~-~m~~~l~~ 119 (185)
+..+|..|+.++...+...+......++ ..+|.|.+.....++.++.. | .. .+..++..
T Consensus 141 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l 220 (252)
T 4hxt_A 141 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKL 220 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 9999999999998888766655444443 38888888888766655430 0 00 13466778
Q ss_pred ccCCCHHHHHHHHHHHHHHhhcChh
Q psy18155 120 LKDSDLNVRRVALVAFNSAAHNKPS 144 (185)
Q Consensus 120 l~D~d~~Vr~~A~~~L~~~a~~~p~ 144 (185)
+++++.++|..|+.+|...+...+.
T Consensus 221 l~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 221 LTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 8888999999999999988776554
No 23
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.03 E-value=4.6e-05 Score=61.94 Aligned_cols=136 Identities=18% Similarity=0.108 Sum_probs=91.8
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhhcCCCcccccchhh-hh------HHHHhhHHHHH-HhccCCChHHHHHHHHHHH
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQS-ID------PLLRQTIGDFL-SALKDSDLNVRRVALVAFN 73 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~-~d------~~L~~~i~~fl-~~l~d~d~~vR~~al~~ln 73 (185)
|.-.+.+||+.+ -++.++.|.++++++++.+|..+.. +- .....+++-+. .+++|++..||..|+.++.
T Consensus 40 r~~A~~~L~~~~---~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~ 116 (280)
T 1oyz_A 40 RISSARVLQLRG---GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTA 116 (280)
T ss_dssp HHHHHHHHHHHC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC---CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 556778888887 4689999999999998888843321 10 01222333333 3578999999999988887
Q ss_pred HhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHh---------hHHHHHHhccCCCHHHHHHHHHHHHHHhhcChh
Q psy18155 74 SAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQ---------TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS 144 (185)
Q Consensus 74 ~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~---------~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~ 144 (185)
......|. .-..++|.|.+...+++..||..-.. .+..++..++|++..||..|+.+|.......+.
T Consensus 117 ~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~ 192 (280)
T 1oyz_A 117 QRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD 192 (280)
T ss_dssp HHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH
T ss_pred HHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH
Confidence 65433221 23457788888788887777652211 234667788899999999999999886544444
No 24
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.99 E-value=4.5e-05 Score=62.79 Aligned_cols=145 Identities=18% Similarity=0.234 Sum_probs=103.0
Q ss_pred HHhhcccCCccc---hHHHHHH-hhcCCCcccccchhhhhHHHHhhHHHHHHhc-cCCChHHHHHHHHHHHHhhhcCc-h
Q psy18155 8 CLGKLTLIDPSN---LLPRLQE-SLKSNSALMRTTPQSIDPLLRQTIGDFLSAL-KDSDLNVRRVALVAFNSAAHNKP-S 81 (185)
Q Consensus 8 ~lg~l~~~~~~~---~l~~L~~-~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l-~d~d~~vR~~al~~ln~~~~~kp-~ 81 (185)
+-..+.-.+|.+ .+..|.. .+++ .+........++ .++.-+...+ +|++..||..|+.++..++.+-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~----~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~ 95 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYS----NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP 95 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHH----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 344566678865 4555555 4432 222221111222 2344455677 89999999999999988886554 4
Q ss_pred hhH-HhHHhHHHHHHHHhhcCCCCCch------------H--------HHhhHHHHHHhccCCCHHHHHHHHHHHHHHhh
Q psy18155 82 LVI-DLLDSVLPQLYAETAVKPQSIDP------------L--------LRQTIGDFLSALKDSDLNVRRVALVAFNSAAH 140 (185)
Q Consensus 82 ll~-~~l~~~Lp~L~~~t~~~~~~vr~------------~--------L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~ 140 (185)
-+. .+...++|.++....++...|++ . |...|..++..++..+..+|..++.++.+.+.
T Consensus 96 ~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 96 GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 566 89999999999999998877754 1 44456677788888899999999999999877
Q ss_pred cCh---hhHHHhH-hhHhhhh
Q psy18155 141 NKP---SLVIDLL-DSVLPQL 157 (185)
Q Consensus 141 ~~p---~lv~~~L-~~llp~L 157 (185)
..+ ..+.+++ +.++|.|
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l 196 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIV 196 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHH
Confidence 665 5577899 8999988
No 25
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.97 E-value=4.9e-05 Score=62.53 Aligned_cols=138 Identities=13% Similarity=0.116 Sum_probs=96.5
Q ss_pred CCccchHHHHHHhh-cCCCcccc------------cch-hhhh-HHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcC
Q psy18155 15 IDPSNLLPRLQESL-KSNSALMR------------TTP-QSID-PLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNK 79 (185)
Q Consensus 15 ~~~~~~l~~L~~~l-~~~~~~~r------------~~~-~~~d-~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~k 79 (185)
.++.+++..|.+.+ ++++..+| ... ..+. .|...++|.++..++|....||..|-.++.+++.+-
T Consensus 56 ~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 56 QNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 34568888999999 67777666 222 3566 688889999999999999999999999998887654
Q ss_pred -chhhHHhHHhHHHHHHHHhhcCCCCCch------------------HH-----HhhHHHHHHhccCCCHHHHHHHHHHH
Q psy18155 80 -PSLVIDLLDSVLPQLYAETAVKPQSIDP------------------LL-----RQTIGDFLSALKDSDLNVRRVALVAF 135 (185)
Q Consensus 80 -p~ll~~~l~~~Lp~L~~~t~~~~~~vr~------------------~L-----~~~m~~~l~~l~D~d~~Vr~~A~~~L 135 (185)
|.....+++.+++.|+.....+...+|. .+ .+.+..+...++|++.+||.+|+.++
T Consensus 136 ~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 136 DPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp CTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3222223888888888777666555543 12 22334556788999999999999888
Q ss_pred HHHhhcChh-hHHHhHhh
Q psy18155 136 NSAAHNKPS-LVIDLLDS 152 (185)
Q Consensus 136 ~~~a~~~p~-lv~~~L~~ 152 (185)
.+....-.. -+.++++.
T Consensus 216 ~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 216 AILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp HHHHHHHCSGGGHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHH
Confidence 886532222 24455444
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.96 E-value=7.8e-05 Score=66.21 Aligned_cols=156 Identities=12% Similarity=0.158 Sum_probs=111.0
Q ss_pred chhHHHHHhhcccCCc--------cchHHHHHHhhcCCCcccccchh------------hhhH-HHHhhHHHHHHhccCC
Q psy18155 2 RNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTPQ------------SIDP-LLRQTIGDFLSALKDS 60 (185)
Q Consensus 2 r~vvae~lg~l~~~~~--------~~~l~~L~~~l~~~~~~~r~~~~------------~~d~-~L~~~i~~fl~~l~d~ 60 (185)
|..++.+||.++...+ ..++|.|.+++.++++.++..+. .... .....+|.++.+++++
T Consensus 190 r~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~ 269 (530)
T 1wa5_B 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC
Confidence 5567888888886543 36899999999887776661111 0111 3467899999999999
Q ss_pred ChHHHHHHHHHHHHhhhcCchhhHHhHH-hHHHHHHHHhhcCCCCCch-------------------HHH-hhHHHHHHh
Q psy18155 61 DLNVRRVALVAFNSAAHNKPSLVIDLLD-SVLPQLYAETAVKPQSIDP-------------------LLR-QTIGDFLSA 119 (185)
Q Consensus 61 d~~vR~~al~~ln~~~~~kp~ll~~~l~-~~Lp~L~~~t~~~~~~vr~-------------------~L~-~~m~~~l~~ 119 (185)
|..+|..|+.++...+.+.+..+...++ .++|.|.+.....+..++. ++. ..+..++..
T Consensus 270 d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 349 (530)
T 1wa5_B 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349 (530)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHH
Confidence 9999999999999888777766666665 4888888888776655543 111 123466778
Q ss_pred ccCCCHHHHHHHHHHHHHHhhcChhhHHHhHh-hHhhhh
Q psy18155 120 LKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD-SVLPQL 157 (185)
Q Consensus 120 l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~-~llp~L 157 (185)
+++++..||..|+.+|...+...+..+...++ .++|.|
T Consensus 350 L~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L 388 (530)
T 1wa5_B 350 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388 (530)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 88889999999999999988766654444332 344544
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.95 E-value=7.3e-05 Score=66.42 Aligned_cols=144 Identities=13% Similarity=0.100 Sum_probs=105.2
Q ss_pred chhHHHHHhhcccCCc--------cchHHHHHHhhcCCCcccccchh------------hhhHH-HHhhHHHHHHhccCC
Q psy18155 2 RNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTPQ------------SIDPL-LRQTIGDFLSALKDS 60 (185)
Q Consensus 2 r~vvae~lg~l~~~~~--------~~~l~~L~~~l~~~~~~~r~~~~------------~~d~~-L~~~i~~fl~~l~d~ 60 (185)
|..++.+|+.++.... ..++|.|.++++++++.+|..+. .-+.+ -...+|.++.+++++
T Consensus 148 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 227 (530)
T 1wa5_B 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN 227 (530)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC
Confidence 4567888888887543 57899999999988888872221 11111 235789999999999
Q ss_pred ChHHHHHHHHHHHHhhhcC-chhhHHhHHhHHHHHHHHhhcCCCCCch-------------------HHH-hhHHHHHHh
Q psy18155 61 DLNVRRVALVAFNSAAHNK-PSLVIDLLDSVLPQLYAETAVKPQSIDP-------------------LLR-QTIGDFLSA 119 (185)
Q Consensus 61 d~~vR~~al~~ln~~~~~k-p~ll~~~l~~~Lp~L~~~t~~~~~~vr~-------------------~L~-~~m~~~l~~ 119 (185)
+..+|+.|+.++.....++ |..-......++|.|.+.....++.++. ++. ..+..++..
T Consensus 228 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l 307 (530)
T 1wa5_B 228 KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 307 (530)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH
Confidence 9999999999998888665 6555556677888888888776655543 000 123466778
Q ss_pred ccCCCHHHHHHHHHHHHHHhhcChhh
Q psy18155 120 LKDSDLNVRRVALVAFNSAAHNKPSL 145 (185)
Q Consensus 120 l~D~d~~Vr~~A~~~L~~~a~~~p~l 145 (185)
+++++..||..|+.+|...+...+..
T Consensus 308 L~~~~~~v~~~a~~~L~~l~~~~~~~ 333 (530)
T 1wa5_B 308 LSHESTLVQTPALRAVGNIVTGNDLQ 333 (530)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HCCCChhhHHHHHHHHHHHHcCCHHH
Confidence 88899999999999999988765553
No 28
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.94 E-value=9.5e-05 Score=68.38 Aligned_cols=156 Identities=16% Similarity=0.196 Sum_probs=104.3
Q ss_pred chhHHHHHhhcccCC----ccchHHHHHHhhcCCCcccccch-------------hhhhHHHHhhHHHHHHhccCCChHH
Q psy18155 2 RNVVAECLGKLTLID----PSNLLPRLQESLKSNSALMRTTP-------------QSIDPLLRQTIGDFLSALKDSDLNV 64 (185)
Q Consensus 2 r~vvae~lg~l~~~~----~~~~l~~L~~~l~~~~~~~r~~~-------------~~~d~~L~~~i~~fl~~l~d~d~~v 64 (185)
|...+.|++.++-.. -+.++|.+.+.+.+++..+|..+ ..+..++..++|.++..++|++..|
T Consensus 345 r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v 424 (876)
T 1qgr_A 345 CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 424 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 445556666554322 24566777777778877777111 2344567788999999999999999
Q ss_pred HHHHHHHHHHhhhcCchh--hHHhHHhHHHHHHHHhhcCCCCCc---------------------------------hHH
Q psy18155 65 RRVALVAFNSAAHNKPSL--VIDLLDSVLPQLYAETAVKPQSID---------------------------------PLL 109 (185)
Q Consensus 65 R~~al~~ln~~~~~kp~l--l~~~l~~~Lp~L~~~t~~~~~~vr---------------------------------~~L 109 (185)
|..|..++..++...+.. ..++++.++|.|++...+. ..|+ ..+
T Consensus 425 r~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 503 (876)
T 1qgr_A 425 RDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF 503 (876)
T ss_dssp HHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH
T ss_pred HHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH
Confidence 999999998887665543 3567888888888876653 2222 122
Q ss_pred HhhHHHHHHhccCC---CHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhh
Q psy18155 110 RQTIGDFLSALKDS---DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 110 ~~~m~~~l~~l~D~---d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly 158 (185)
.+.+..++..+.+. +..+|..++.++...+...+.-..++++.++|.+.
T Consensus 504 ~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 555 (876)
T 1qgr_A 504 ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIM 555 (876)
T ss_dssp HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHH
Confidence 22233444555443 45789889988888777666556777888888774
No 29
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.89 E-value=3.2e-05 Score=56.79 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=33.0
Q ss_pred CCccchHHHHHHhhcCCCcccccchh-hhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHH
Q psy18155 15 IDPSNLLPRLQESLKSNSALMRTTPQ-SIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNS 74 (185)
Q Consensus 15 ~~~~~~l~~L~~~l~~~~~~~r~~~~-~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~ 74 (185)
-..+..++.|.++++++++.+|..+. .+-.+-..-++.++.+++|+|..||..|+.++..
T Consensus 8 ~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~~~~L~~~L~d~~~~vR~~A~~aL~~ 68 (131)
T 1te4_A 8 HHHSSGLVPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGN 68 (131)
T ss_dssp -------------CCSSCCCSSSSCCSSTTSCSSTTHHHHHHGGGCSCHHHHHHHHHHHGG
T ss_pred ccccccHHHHHHHhcCCCHHHHHHHHHHHHHhCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 44578889999999999998883332 1111112236788899999999999999877753
No 30
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.87 E-value=4.1e-05 Score=69.81 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=102.0
Q ss_pred chhHHHHHhhcccC-CccchHHHHHHhhcCCCcccccchh-hhhH-------HHH--hhHHHHHHhccCCChHHHHHHHH
Q psy18155 2 RNVVAECLGKLTLI-DPSNLLPRLQESLKSNSALMRTTPQ-SIDP-------LLR--QTIGDFLSALKDSDLNVRRVALV 70 (185)
Q Consensus 2 r~vvae~lg~l~~~-~~~~~l~~L~~~l~~~~~~~r~~~~-~~d~-------~L~--~~i~~fl~~l~d~d~~vR~~al~ 70 (185)
|.....++|.++.. -++.++|.+.++++++++.+|..+. .+-. .+. ..++.+..+++|+|+.||..|+.
T Consensus 103 r~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~ 182 (591)
T 2vgl_B 103 RALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVA 182 (591)
T ss_dssp HHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHH
Confidence 55667788887753 3466777799999999999993332 1111 122 47788899999999999999999
Q ss_pred HHHHhhhcCchh-hHHhHHhHHHHHHHHhhcCCCCCch---------------HHHhhHHHHHHhccCCCHHHHHHHHHH
Q psy18155 71 AFNSAAHNKPSL-VIDLLDSVLPQLYAETAVKPQSIDP---------------LLRQTIGDFLSALKDSDLNVRRVALVA 134 (185)
Q Consensus 71 ~ln~~~~~kp~l-l~~~l~~~Lp~L~~~t~~~~~~vr~---------------~L~~~m~~~l~~l~D~d~~Vr~~A~~~ 134 (185)
++.......|.. ..+.....++.|.+...+.++..+. .....+.++...+++.+..|+.+|+.+
T Consensus 183 aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~ 262 (591)
T 2vgl_B 183 ALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKV 262 (591)
T ss_dssp HHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHH
T ss_pred HHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 999988877743 2222233333333333333322211 112235566778889999999999999
Q ss_pred HHHHhh---cChhhHHHhHhhHhhhh
Q psy18155 135 FNSAAH---NKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 135 L~~~a~---~~p~lv~~~L~~llp~L 157 (185)
+..... ..|..+....+++.+.|
T Consensus 263 i~~l~~~~~~~~~~~~~~~~~~~~~L 288 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNMLLKKLAPPL 288 (591)
T ss_dssp HHHSCCSCCBTTBSHHHHHHHTHHHH
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 988753 24566665556666544
No 31
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.84 E-value=0.00014 Score=62.11 Aligned_cols=156 Identities=10% Similarity=0.097 Sum_probs=108.7
Q ss_pred chhHHHHHhhcccCCc-----------cc--------hHHHHHHhhcCCCcccccchhhhhH---------HHHhhHHHH
Q psy18155 2 RNVVAECLGKLTLIDP-----------SN--------LLPRLQESLKSNSALMRTTPQSIDP---------LLRQTIGDF 53 (185)
Q Consensus 2 r~vvae~lg~l~~~~~-----------~~--------~l~~L~~~l~~~~~~~r~~~~~~d~---------~L~~~i~~f 53 (185)
|...+-+++++.-..| +. +-..|.+.+.++++.++..+..+-. ....++|.+
T Consensus 54 R~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i~~ia~~~~~~~~w~~ll~~L 133 (462)
T 1ibr_B 54 RVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQL 133 (462)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGGTCCTTHHHHH
T ss_pred HHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHhccccccHHHHHHH
Confidence 6777888888776665 21 3344666676665544211111111 123467888
Q ss_pred HHhccCC--ChHHHHHHHHHHHHhhhcC-chhhHHhHHhHHHHHHHHhhcC--CCCCchH----H-------H-------
Q psy18155 54 LSALKDS--DLNVRRVALVAFNSAAHNK-PSLVIDLLDSVLPQLYAETAVK--PQSIDPL----L-------R------- 110 (185)
Q Consensus 54 l~~l~d~--d~~vR~~al~~ln~~~~~k-p~ll~~~l~~~Lp~L~~~t~~~--~~~vr~~----L-------~------- 110 (185)
++.++++ |..+|..|+.++......- +..+..+++.+++.+.+...+. +..||.. + .
T Consensus 134 ~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 213 (462)
T 1ibr_B 134 VANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES 213 (462)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 8999998 9999999999998887643 7778888899999999988887 4445541 1 1
Q ss_pred --hh-HHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHh-hHhhhh
Q psy18155 111 --QT-IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD-SVLPQL 157 (185)
Q Consensus 111 --~~-m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~-~llp~L 157 (185)
+. +..+...++|++.+||+.++.+|...+...|..+.++++ .+++.+
T Consensus 214 ~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~ 264 (462)
T 1ibr_B 214 ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAIT 264 (462)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 112223567889999999999999998888887778888 888876
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.81 E-value=0.00032 Score=54.12 Aligned_cols=122 Identities=14% Similarity=0.224 Sum_probs=74.4
Q ss_pred CCccchHHHHHHhhcCCCcccccch-hhh-----------hHHH-HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCch
Q psy18155 15 IDPSNLLPRLQESLKSNSALMRTTP-QSI-----------DPLL-RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS 81 (185)
Q Consensus 15 ~~~~~~l~~L~~~l~~~~~~~r~~~-~~~-----------d~~L-~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ 81 (185)
......-|.|..+++++++.+|..+ ..+ ..+. ...+|.++.++++++..+|..|+.++...+.+.+.
T Consensus 8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 3455677889999999998888211 111 1111 25688999999999999999999999766543332
Q ss_pred hhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhh----H-HHhHhhHhhh
Q psy18155 82 LVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSL----V-IDLLDSVLPQ 156 (185)
Q Consensus 82 ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~l----v-~~~L~~llp~ 156 (185)
.....++. ..+..++..+++++..+|..|+.+|...+...+.. + ...++.++..
T Consensus 88 ~~~~i~~~---------------------g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 146 (210)
T 4db6_A 88 QIQAVIDA---------------------GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146 (210)
T ss_dssp HHHHHHHT---------------------TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHC---------------------CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHH
Confidence 11111110 02445666777778888888888888876544432 1 1344555555
Q ss_pred h
Q psy18155 157 L 157 (185)
Q Consensus 157 L 157 (185)
+
T Consensus 147 l 147 (210)
T 4db6_A 147 L 147 (210)
T ss_dssp T
T ss_pred H
Confidence 5
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.81 E-value=0.00035 Score=55.32 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=96.2
Q ss_pred chHHHHHHhhcCCCcccccchh------------hhhHHH-HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHH
Q psy18155 19 NLLPRLQESLKSNSALMRTTPQ------------SIDPLL-RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVID 85 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r~~~~------------~~d~~L-~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~ 85 (185)
.++|.|.++++++++.+|..+. .-+.+. ...+|.++.++++++..+|..|+.++.....+.+.-...
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH
Confidence 5789999999998887772211 111112 236899999999999999999999998887776655344
Q ss_pred hHHh-HHHHHHHHhhcCCCCCchH-------------------H-HhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChh
Q psy18155 86 LLDS-VLPQLYAETAVKPQSIDPL-------------------L-RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS 144 (185)
Q Consensus 86 ~l~~-~Lp~L~~~t~~~~~~vr~~-------------------L-~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~ 144 (185)
.++. .+|.|.+.....+..++.. . ...+..++..+++++.+|+..|+.+|...+...+.
T Consensus 134 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 213 (252)
T 4db8_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 213 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 4443 7888888887776655430 0 01134677888889999999999999998876666
Q ss_pred hHHHhHh-hHhhhh
Q psy18155 145 LVIDLLD-SVLPQL 157 (185)
Q Consensus 145 lv~~~L~-~llp~L 157 (185)
......+ .++|.|
T Consensus 214 ~~~~~~~~g~i~~L 227 (252)
T 4db8_A 214 QKQAVKEAGALEKL 227 (252)
T ss_dssp HHHHHHHTTHHHHH
T ss_pred HHHHHHHCCcHHHH
Confidence 4433332 244444
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.81 E-value=0.0002 Score=63.25 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=106.8
Q ss_pred chhHHHHHhhcccCCcc--------chHHHHHHhhcCCCcccccchhh------------hhHHH-HhhHHHHHHhc-cC
Q psy18155 2 RNVVAECLGKLTLIDPS--------NLLPRLQESLKSNSALMRTTPQS------------IDPLL-RQTIGDFLSAL-KD 59 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~--------~~l~~L~~~l~~~~~~~r~~~~~------------~d~~L-~~~i~~fl~~l-~d 59 (185)
|..++++|+.++..+.. .++|.|.+++.++++.+|..+.. -+.++ ...++.++.++ ++
T Consensus 135 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~ 214 (528)
T 4b8j_A 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH 214 (528)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC
Confidence 45678889988875432 58999999999988888822211 11112 24688999999 78
Q ss_pred CChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchH----H---------------H-hhHHHHHHh
Q psy18155 60 SDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPL----L---------------R-QTIGDFLSA 119 (185)
Q Consensus 60 ~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~----L---------------~-~~m~~~l~~ 119 (185)
++..+|+.|+.++.....++|..-.......+|.|.+.....+..++.. | . ..+..++..
T Consensus 215 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~l 294 (528)
T 4b8j_A 215 TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (528)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHH
Confidence 8999999999999988888777666677788898888887766655430 0 0 123467788
Q ss_pred ccCCCHHHHHHHHHHHHHHhhcChhhH
Q psy18155 120 LKDSDLNVRRVALVAFNSAAHNKPSLV 146 (185)
Q Consensus 120 l~D~d~~Vr~~A~~~L~~~a~~~p~lv 146 (185)
+++++..|+..|+.+|...+...+...
T Consensus 295 L~~~~~~v~~~a~~~L~nl~~~~~~~~ 321 (528)
T 4b8j_A 295 LLHPSPSVLIPALRTVGNIVTGDDAQT 321 (528)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCChhHHHHHHHHHHHHHcCCHHHH
Confidence 888999999999999999887666544
No 35
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.80 E-value=0.00011 Score=58.32 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=95.8
Q ss_pred chhHHHHHhhcccCCc--------cchHHHHHHhhcCCCcccccchh------------hhhHHH-HhhHHHHHHhccCC
Q psy18155 2 RNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTPQ------------SIDPLL-RQTIGDFLSALKDS 60 (185)
Q Consensus 2 r~vvae~lg~l~~~~~--------~~~l~~L~~~l~~~~~~~r~~~~------------~~d~~L-~~~i~~fl~~l~d~ 60 (185)
|..++.+|+.++..+. ...+|.|.++++++++.+|..+. ..+.+. ...+|.++.+++++
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 150 (252)
T 4db8_A 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 150 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC
Confidence 4556778888887543 34899999999998888772211 112222 24688899999999
Q ss_pred ChHHHHHHHHHHHHhhhcCchhhHHhH-HhHHHHHHHHhhcCCCCCchH----H---------------Hh-hHHHHHHh
Q psy18155 61 DLNVRRVALVAFNSAAHNKPSLVIDLL-DSVLPQLYAETAVKPQSIDPL----L---------------RQ-TIGDFLSA 119 (185)
Q Consensus 61 d~~vR~~al~~ln~~~~~kp~ll~~~l-~~~Lp~L~~~t~~~~~~vr~~----L---------------~~-~m~~~l~~ 119 (185)
+..+|..|+.++.....+.+......+ ..++|.|.+.....++.++.. | .. .+..++..
T Consensus 151 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 230 (252)
T 4db8_A 151 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 230 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHH
Confidence 999999999999888876666554444 348888888888776555431 0 00 12356667
Q ss_pred ccCCCHHHHHHHHHHHHHHh
Q psy18155 120 LKDSDLNVRRVALVAFNSAA 139 (185)
Q Consensus 120 l~D~d~~Vr~~A~~~L~~~a 139 (185)
+++++.++|+.|+.+|...+
T Consensus 231 l~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 231 QSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp TTCSSSHHHHTHHHHHHTTC
T ss_pred hCCCCHHHHHHHHHHHHHHh
Confidence 77778888888888776543
No 36
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.79 E-value=8.3e-05 Score=68.37 Aligned_cols=107 Identities=18% Similarity=0.137 Sum_probs=79.8
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchH-------------HHhhHH
Q psy18155 48 QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPL-------------LRQTIG 114 (185)
Q Consensus 48 ~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~-------------L~~~m~ 114 (185)
..+..+..++.++|.++|..||.+++..++..|.++.++.+.+++.|+. ++..||.. ....+.
T Consensus 313 ~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d----~d~~Ir~~alelL~~l~~~~nv~~iv~ 388 (618)
T 1w63_A 313 LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKD----LDVSIKRRAMELSFALVNGNNIRGMMK 388 (618)
T ss_dssp HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGS----SCHHHHHHHHHHHHHHCCSSSTHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccC----CChhHHHHHHHHHHHHcccccHHHHHH
Confidence 3455666778999999999999999999999999999988888877653 33334320 011234
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhh
Q psy18155 115 DFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 115 ~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly 158 (185)
.++..+.+.|.++|+.++.++...+..-+.....+++.++..|-
T Consensus 389 eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~ 432 (618)
T 1w63_A 389 ELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLT 432 (618)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 55555557899999999999999988765557778888887663
No 37
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.70 E-value=0.00021 Score=63.19 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=106.8
Q ss_pred chhHHHHHhhcccCCcc--------chHHHHHHhh-cCCCcccccch------------hhhhHHHHhhHHHHHHhccCC
Q psy18155 2 RNVVAECLGKLTLIDPS--------NLLPRLQESL-KSNSALMRTTP------------QSIDPLLRQTIGDFLSALKDS 60 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~--------~~l~~L~~~l-~~~~~~~r~~~------------~~~d~~L~~~i~~fl~~l~d~ 60 (185)
|..++++||.++...+. .++|.|.+++ +++++.++..+ ..--......+|.++.++.++
T Consensus 177 ~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~ 256 (528)
T 4b8j_A 177 REQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN 256 (528)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC
Confidence 55678888988765443 4799999999 56666665111 111113466889999999999
Q ss_pred ChHHHHHHHHHHHHhhhcCchhhHHhHH-hHHHHHHHHhhcCCCCCch-------------------HHHh-hHHHHHHh
Q psy18155 61 DLNVRRVALVAFNSAAHNKPSLVIDLLD-SVLPQLYAETAVKPQSIDP-------------------LLRQ-TIGDFLSA 119 (185)
Q Consensus 61 d~~vR~~al~~ln~~~~~kp~ll~~~l~-~~Lp~L~~~t~~~~~~vr~-------------------~L~~-~m~~~l~~ 119 (185)
|..+|..|+.++.....+.+..+...++ .++|.|.+.....++.++. ++.. .+..++..
T Consensus 257 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 336 (528)
T 4b8j_A 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSL 336 (528)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHH
Confidence 9999999999998888766655555554 3788888887777665543 0000 13456677
Q ss_pred ccCC-CHHHHHHHHHHHHHHhhcChhhHHHhHh-hHhhhh
Q psy18155 120 LKDS-DLNVRRVALVAFNSAAHNKPSLVIDLLD-SVLPQL 157 (185)
Q Consensus 120 l~D~-d~~Vr~~A~~~L~~~a~~~p~lv~~~L~-~llp~L 157 (185)
++++ +..|++.|+.+|...+...+..+...++ .++|.|
T Consensus 337 L~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L 376 (528)
T 4b8j_A 337 LTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPL 376 (528)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHH
T ss_pred HcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHH
Confidence 7777 8999999999999987766654443332 445554
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.63 E-value=4e-05 Score=70.50 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=101.9
Q ss_pred chhHHHHHhhcccCCc-cchHHHHHHhhcCCCcccccchh-hhhH-------HHHhhHHHHHHhccCCChHHHHHHHHHH
Q psy18155 2 RNVVAECLGKLTLIDP-SNLLPRLQESLKSNSALMRTTPQ-SIDP-------LLRQTIGDFLSALKDSDLNVRRVALVAF 72 (185)
Q Consensus 2 r~vvae~lg~l~~~~~-~~~l~~L~~~l~~~~~~~r~~~~-~~d~-------~L~~~i~~fl~~l~d~d~~vR~~al~~l 72 (185)
|.....+||.++..+. +.++|.+.++++++++.+|.++. .+-. .+..+++.+..++.|+|+.|+..|+.++
T Consensus 124 r~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L 203 (618)
T 1w63_A 124 QGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLL 203 (618)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHH
Confidence 6667788888886433 44588899999999999983332 1111 2334555666888999999999999999
Q ss_pred HHhhhcCchhhHHhHHhHHHHHHHHhhc---------------CCCCC----------------------chHHH-----
Q psy18155 73 NSAAHNKPSLVIDLLDSVLPQLYAETAV---------------KPQSI----------------------DPLLR----- 110 (185)
Q Consensus 73 n~~~~~kp~ll~~~l~~~Lp~L~~~t~~---------------~~~~v----------------------r~~L~----- 110 (185)
.....+.|.. ..++..++|.+++.... .++.. .+.|.
T Consensus 204 ~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~ 282 (618)
T 1w63_A 204 TEMCERSPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATN 282 (618)
T ss_dssp HHHCCSHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHT
T ss_pred HHHHHhChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 8887776653 22222233333221110 00000 00000
Q ss_pred ------------------------------hhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhhhh
Q psy18155 111 ------------------------------QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAE 160 (185)
Q Consensus 111 ------------------------------~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly~e 160 (185)
..++.+...+.++|.+||..|+.+|+..++..|.++.++.+.+++.++++
T Consensus 283 ~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~ 362 (618)
T 1w63_A 283 TETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDL 362 (618)
T ss_dssp SCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSS
T ss_pred cccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCC
Confidence 01223333466788899999999999999999999999999999988763
No 39
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.34 E-value=0.0011 Score=60.23 Aligned_cols=123 Identities=13% Similarity=0.224 Sum_probs=85.2
Q ss_pred CccchHHHHHHhhcCCCcccccchh-hh------hH-HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhH
Q psy18155 16 DPSNLLPRLQESLKSNSALMRTTPQ-SI------DP-LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLL 87 (185)
Q Consensus 16 ~~~~~l~~L~~~l~~~~~~~r~~~~-~~------d~-~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l 87 (185)
+-+.+.+.+.+++++++...|-..- .+ +. .+--.+..|...++|+|+.+|..|+.++.... .|. ..
T Consensus 46 d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~----~~ 119 (591)
T 2vgl_B 46 DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDK----IT 119 (591)
T ss_dssp CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGG----GH
T ss_pred ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHH----HH
Confidence 5577889999999888887772211 00 11 22334566777889999999999988886553 232 33
Q ss_pred HhHHHHHHHHhhcCCCCCchH---------------HH--hhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChh
Q psy18155 88 DSVLPQLYAETAVKPQSIDPL---------------LR--QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS 144 (185)
Q Consensus 88 ~~~Lp~L~~~t~~~~~~vr~~---------------L~--~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~ 144 (185)
..++|.+.+...+++..||+. +. ..+..+...++|+|..|+..|..+|.+.+...|.
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCC
Confidence 445666777777777777761 11 1345667788999999999999999998877763
No 40
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.21 E-value=0.0026 Score=53.79 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=88.7
Q ss_pred chHHHHHH-hhcCCCcccccc------------hhhhhHHH-HhhHHHHHHhcc-CCChHHHHHHHHHHHHhhhcCchhh
Q psy18155 19 NLLPRLQE-SLKSNSALMRTT------------PQSIDPLL-RQTIGDFLSALK-DSDLNVRRVALVAFNSAAHNKPSLV 83 (185)
Q Consensus 19 ~~l~~L~~-~l~~~~~~~r~~------------~~~~d~~L-~~~i~~fl~~l~-d~d~~vR~~al~~ln~~~~~kp~ll 83 (185)
..+|.|.+ +|+++++.+|.. +..-+.++ ...+|.++.+++ +++..+|+.|+.++...+.++|...
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~ 160 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL 160 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 35688888 999999888811 11111123 257889999998 4689999999999999888777655
Q ss_pred HHhHH-hHHHHHHHHhhcCCCCCch------------------HHH--hhHHHHHHhccCCCHHHHHHHHHHHHHHhhcC
Q psy18155 84 IDLLD-SVLPQLYAETAVKPQSIDP------------------LLR--QTIGDFLSALKDSDLNVRRVALVAFNSAAHNK 142 (185)
Q Consensus 84 ~~~l~-~~Lp~L~~~t~~~~~~vr~------------------~L~--~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~ 142 (185)
...++ ..+|.|.+.....+..++. .+. ..+.++...++.++..|+..|+.+|...+...
T Consensus 161 ~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 161 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 54443 4777777777665555533 111 12346677788889999999999998887776
Q ss_pred hhh
Q psy18155 143 PSL 145 (185)
Q Consensus 143 p~l 145 (185)
+..
T Consensus 241 ~~~ 243 (296)
T 1xqr_A 241 PQG 243 (296)
T ss_dssp HHH
T ss_pred hhH
Confidence 653
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.91 E-value=0.014 Score=51.95 Aligned_cols=156 Identities=14% Similarity=0.158 Sum_probs=101.7
Q ss_pred chhHHHHHhhcccCCcc--------chHHHHHHhhcCCCcccc---------cchhh--------hh-HHHHhhHHHHHH
Q psy18155 2 RNVVAECLGKLTLIDPS--------NLLPRLQESLKSNSALMR---------TTPQS--------ID-PLLRQTIGDFLS 55 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~--------~~l~~L~~~l~~~~~~~r---------~~~~~--------~d-~~L~~~i~~fl~ 55 (185)
|..++++||.++..++. ..++.|..++.+++.... ++-.. .. ......+|.+..
T Consensus 179 ~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~ 258 (529)
T 3tpo_A 179 SEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 258 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHH
Confidence 45577888888765542 467889999976643321 11000 00 124677888999
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCchhhHHhHHh-HHHHHHHHhhcCCCCCch-------------------HHHh-hHH
Q psy18155 56 ALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS-VLPQLYAETAVKPQSIDP-------------------LLRQ-TIG 114 (185)
Q Consensus 56 ~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~-~Lp~L~~~t~~~~~~vr~-------------------~L~~-~m~ 114 (185)
++++++..++..|..++.....+.+......... ++|.|.+.....+..++. ++.. .+.
T Consensus 259 LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~ 338 (529)
T 3tpo_A 259 LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 338 (529)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred HhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHH
Confidence 9999999999999999988876666544444433 777777777666554432 0000 112
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHh-hHhhhh
Q psy18155 115 DFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD-SVLPQL 157 (185)
Q Consensus 115 ~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~-~llp~L 157 (185)
++...+++.+.+||+.|+.+|...+...+.......+ .++|.|
T Consensus 339 ~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~L 382 (529)
T 3tpo_A 339 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 382 (529)
T ss_dssp GHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHH
Confidence 5667788889999999999999887766664433333 355555
No 42
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.89 E-value=0.0045 Score=57.09 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=91.0
Q ss_pred CccchHHHHHHhhcCCCcccccc-------hhhhh-HHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhH
Q psy18155 16 DPSNLLPRLQESLKSNSALMRTT-------PQSID-PLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLL 87 (185)
Q Consensus 16 ~~~~~l~~L~~~l~~~~~~~r~~-------~~~~d-~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l 87 (185)
+-+.+.+...+++.|++...|-. ...-+ +.+--.+..|..-++|+|+.+|..||.++..... | +..
T Consensus 71 d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~----e~~ 144 (621)
T 2vgl_A 71 DIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS--R----EMA 144 (621)
T ss_dssp CCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--H----HHH
T ss_pred CCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--H----HHH
Confidence 44567788888888887766610 00011 1233345667778889999999999999976632 3 345
Q ss_pred HhHHHHHHHHh--hcCCCCCchH---------------HH--hhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHH
Q psy18155 88 DSVLPQLYAET--AVKPQSIDPL---------------LR--QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVID 148 (185)
Q Consensus 88 ~~~Lp~L~~~t--~~~~~~vr~~---------------L~--~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~ 148 (185)
+.++|.+.+.. .+.++.||+. +. ..+..+...++|.|..|+..|+.++.+.+...|....+
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~ 224 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKT 224 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHH
Confidence 56777777777 7777777761 11 23456677888999999999999999988888875444
Q ss_pred hHhhHhh
Q psy18155 149 LLDSVLP 155 (185)
Q Consensus 149 ~L~~llp 155 (185)
.+++++.
T Consensus 225 ~~~~~~~ 231 (621)
T 2vgl_A 225 SVSLAVS 231 (621)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 43
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.77 E-value=0.021 Score=50.80 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=79.1
Q ss_pred chHHHHHHhhcCC-Cccccc-chhhh-----------hHHH-HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhH
Q psy18155 19 NLLPRLQESLKSN-SALMRT-TPQSI-----------DPLL-RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVI 84 (185)
Q Consensus 19 ~~l~~L~~~l~~~-~~~~r~-~~~~~-----------d~~L-~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~ 84 (185)
.++|.|.++|++. ++.+|- ++..+ ..+. ...||.|+.++++++.+||+.|+.++...+...|..-.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~ 179 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3699999999754 466661 11111 1112 24699999999999999999999999777666554322
Q ss_pred HhHHh-HHHHHHHHhhcCCCCC------ch-------------------HHHhhHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 85 DLLDS-VLPQLYAETAVKPQSI------DP-------------------LLRQTIGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 85 ~~l~~-~Lp~L~~~t~~~~~~v------r~-------------------~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
..++. .++.|.......+... +. .....+..+...+.+++.+|+..|+.+|...
T Consensus 180 ~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L 259 (510)
T 3ul1_B 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 259 (510)
T ss_dssp HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22222 3444444433222110 00 1122334566778889999999999999998
Q ss_pred hhcChh
Q psy18155 139 AHNKPS 144 (185)
Q Consensus 139 a~~~p~ 144 (185)
+...+.
T Consensus 260 ~~~~~~ 265 (510)
T 3ul1_B 260 TDGPNE 265 (510)
T ss_dssp TSSCHH
T ss_pred hhchhh
Confidence 776554
No 44
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.75 E-value=0.011 Score=49.88 Aligned_cols=132 Identities=10% Similarity=0.105 Sum_probs=88.9
Q ss_pred CCccchHHHHHHhhcCCCcccccch----------hhhhHH------------H--HhhHHHHHH-hccCCChHHHHHHH
Q psy18155 15 IDPSNLLPRLQESLKSNSALMRTTP----------QSIDPL------------L--RQTIGDFLS-ALKDSDLNVRRVAL 69 (185)
Q Consensus 15 ~~~~~~l~~L~~~l~~~~~~~r~~~----------~~~d~~------------L--~~~i~~fl~-~l~d~d~~vR~~al 69 (185)
.+.++.|++.++.+.++.+.++..+ ..++.+ + ..-+|.|+. ++++++..||..|+
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa 103 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAA 103 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHH
Confidence 5567889999999988755443221 111110 1 234789999 99999999999999
Q ss_pred HHHHHhhhcCchhhHHhHH-hHHHHHHHHhhc-CCCCCch-------------------HHH-hhHHHHHHhccCCCHHH
Q psy18155 70 VAFNSAAHNKPSLVIDLLD-SVLPQLYAETAV-KPQSIDP-------------------LLR-QTIGDFLSALKDSDLNV 127 (185)
Q Consensus 70 ~~ln~~~~~kp~ll~~~l~-~~Lp~L~~~t~~-~~~~vr~-------------------~L~-~~m~~~l~~l~D~d~~V 127 (185)
.++...+.+.|..=...++ ..+|.|.+.... .+..+++ +.. .-+..++..+++.+..|
T Consensus 104 ~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v 183 (296)
T 1xqr_A 104 QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 183 (296)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 9998888887764333333 366777666663 3444443 100 11235667788889999
Q ss_pred HHHHHHHHHHHhhcChhhH
Q psy18155 128 RRVALVAFNSAAHNKPSLV 146 (185)
Q Consensus 128 r~~A~~~L~~~a~~~p~lv 146 (185)
++.|+.+|..++...+...
T Consensus 184 ~~~A~~aLs~L~~~~~~~~ 202 (296)
T 1xqr_A 184 KVKSAFLLQNLLVGHPEHK 202 (296)
T ss_dssp HHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhCChHHH
Confidence 9999999999877666543
No 45
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.67 E-value=0.014 Score=51.85 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=100.6
Q ss_pred chhHHHHHhhcccCCcc--------chHHHHHHhhcCCCcccc---------cchhhh--------hH-HHHhhHHHHHH
Q psy18155 2 RNVVAECLGKLTLIDPS--------NLLPRLQESLKSNSALMR---------TTPQSI--------DP-LLRQTIGDFLS 55 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~--------~~l~~L~~~l~~~~~~~r---------~~~~~~--------d~-~L~~~i~~fl~ 55 (185)
|..++.+||.++...+. ..++.|..++.+++.... ++-..+ +. .....+|.+..
T Consensus 160 ~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~ 239 (510)
T 3ul1_B 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239 (510)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHH
Confidence 45678888888765442 468889999987654322 100000 00 24677888999
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCchhhHHhHHh-HHHHHHHHhhcCCCCCchHHHhh--------------------HH
Q psy18155 56 ALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS-VLPQLYAETAVKPQSIDPLLRQT--------------------IG 114 (185)
Q Consensus 56 ~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~-~Lp~L~~~t~~~~~~vr~~L~~~--------------------m~ 114 (185)
++++++.+++..|..++...+.+.+......... ++|.|.+.....+..++.--... +.
T Consensus 240 LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~ 319 (510)
T 3ul1_B 240 LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 319 (510)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred HHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchH
Confidence 9999999999999999988877666544444433 77777777766655553310000 11
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHh-hHhhhh
Q psy18155 115 DFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD-SVLPQL 157 (185)
Q Consensus 115 ~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~-~llp~L 157 (185)
++...+++.+.+||+.|+.+|...+...+.......+ .++|.|
T Consensus 320 ~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~L 363 (510)
T 3ul1_B 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 363 (510)
T ss_dssp GCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHH
Confidence 3445667889999999999999987766664433332 355555
No 46
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.67 E-value=0.026 Score=53.86 Aligned_cols=143 Identities=10% Similarity=0.099 Sum_probs=83.8
Q ss_pred chhHHHHHhhcc----cCCccchHHHHHHhhcCCCcccc------------cch---------hhhhHHHHhhHHHHHHh
Q psy18155 2 RNVVAECLGKLT----LIDPSNLLPRLQESLKSNSALMR------------TTP---------QSIDPLLRQTIGDFLSA 56 (185)
Q Consensus 2 r~vvae~lg~l~----~~~~~~~l~~L~~~l~~~~~~~r------------~~~---------~~~d~~L~~~i~~fl~~ 56 (185)
|+-+++|++.++ +.+||+++|.|.++++++++..+ ... ..+..+++.+.|++++.
T Consensus 102 r~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~ 181 (960)
T 1wa5_C 102 QVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNL 181 (960)
T ss_dssp HHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 555566665544 47899999999999988765444 110 01122355566655542
Q ss_pred -------ccCCCh---------HHHHHHHHHHHHhh-hcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHh
Q psy18155 57 -------LKDSDL---------NVRRVALVAFNSAA-HNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSA 119 (185)
Q Consensus 57 -------l~d~d~---------~vR~~al~~ln~~~-~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~ 119 (185)
++++.. .+++.++.++.+.. +..|..+.++++.+++.+.+-..-.....
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~-------------- 247 (960)
T 1wa5_C 182 LKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLL-------------- 247 (960)
T ss_dssp HHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCC--------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcc--------------
Confidence 454422 33344555553332 56677777888887776554332211100
Q ss_pred ccC---C----CHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhh
Q psy18155 120 LKD---S----DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 120 l~D---~----d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly 158 (185)
-.| + ...+|+.+|..|...+...+....++++.+++...
T Consensus 248 ~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~ 293 (960)
T 1wa5_C 248 EDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITW 293 (960)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 1 13588899988888887778777788777776653
No 47
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.63 E-value=0.016 Score=47.23 Aligned_cols=129 Identities=18% Similarity=0.273 Sum_probs=80.4
Q ss_pred HHHHHhhcccCCcc---chHHHHHHhhcCCCcccc-cchhhhhH-------HHHhhHHHHHHhccCCChHHHHHHHHHHH
Q psy18155 5 VAECLGKLTLIDPS---NLLPRLQESLKSNSALMR-TTPQSIDP-------LLRQTIGDFLSALKDSDLNVRRVALVAFN 73 (185)
Q Consensus 5 vae~lg~l~~~~~~---~~l~~L~~~l~~~~~~~r-~~~~~~d~-------~L~~~i~~fl~~l~d~d~~vR~~al~~ln 73 (185)
||.-+|.++...|. ..+|.|.+-+.-.++.+| ...-.+.+ .+..++.++++++.++|..=|-.||+.+.
T Consensus 90 Ia~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~ 169 (253)
T 2db0_A 90 IAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIE 169 (253)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred HHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 55566666666653 334444444444455555 11111222 24444556777777777666666666665
Q ss_pred HhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhH
Q psy18155 74 SAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSV 153 (185)
Q Consensus 74 ~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~l 153 (185)
....|.+. ...|++......+.|.|+-||-.|..+|...|...|. +++...+.
T Consensus 170 alGen~~~--------------------------yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~k 222 (253)
T 2db0_A 170 AMGENSFK--------------------------YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKR 222 (253)
T ss_dssp TCCTTTHH--------------------------HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHH
T ss_pred HHhccCcc--------------------------ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHH
Confidence 55444442 3345566666677788899999999999999999998 88887777
Q ss_pred hhhhhhh
Q psy18155 154 LPQLYAE 160 (185)
Q Consensus 154 lp~Ly~e 160 (185)
+.-+-+.
T Consensus 223 l~e~~D~ 229 (253)
T 2db0_A 223 LEELNDT 229 (253)
T ss_dssp HHHCCCS
T ss_pred HHHhcCc
Confidence 6666433
No 48
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.61 E-value=0.021 Score=46.51 Aligned_cols=112 Identities=19% Similarity=0.253 Sum_probs=71.6
Q ss_pred HHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHH----------------------------------HHHHHH
Q psy18155 52 DFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVL----------------------------------PQLYAE 97 (185)
Q Consensus 52 ~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~L----------------------------------p~L~~~ 97 (185)
..+.++.|.--.||+.|+..+...+|..|.+.-+.++.++ |.||+.
T Consensus 36 ~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfan 115 (253)
T 2db0_A 36 KLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFAN 115 (253)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHH
Confidence 3445555555566666666666666666666666665544 333333
Q ss_pred hhcCCCCCch----HHHhhH-----------HHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhhhhhh
Q psy18155 98 TAVKPQSIDP----LLRQTI-----------GDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETA 162 (185)
Q Consensus 98 t~~~~~~vr~----~L~~~m-----------~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly~et~ 162 (185)
-...++.++- .|...| ..+.+.+.+.|..=|.+|+..+.....|.+.-+.|+||++...||+.+.
T Consensus 116 yrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~de 195 (253)
T 2db0_A 116 YRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDE 195 (253)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSH
T ss_pred HhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcch
Confidence 3333222221 111111 2566777788877777777777778899999999999999999988765
Q ss_pred h
Q psy18155 163 V 163 (185)
Q Consensus 163 v 163 (185)
+
T Consensus 196 i 196 (253)
T 2db0_A 196 I 196 (253)
T ss_dssp H
T ss_pred h
Confidence 5
No 49
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.60 E-value=0.0011 Score=48.26 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=68.4
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhhcCCCcccccchhhhhHHH--HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcC
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLL--RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNK 79 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L--~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~k 79 (185)
|..+++.||+++-. . ++.|.++++++++.+|..+...=..+ ...++.++.+++|+|..||+.|+.++....
T Consensus 29 R~~A~~~L~~~~~~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--- 101 (131)
T 1te4_A 29 RRDVSTALSRMGDE---A-FEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIG--- 101 (131)
T ss_dssp SSSCCSSTTSCSST---T-HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhCch---H-HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence 55566677777643 2 59999999999999994443211111 245788889999999999999988886331
Q ss_pred chhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHH
Q psy18155 80 PSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFN 136 (185)
Q Consensus 80 p~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~ 136 (185)
+. ..+..+...++|++..||..|..+|.
T Consensus 102 --------------------------~~---~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 102 --------------------------GE---RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp --------------------------SH---HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred --------------------------cH---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 00 12345556677888999999987764
No 50
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.56 E-value=0.011 Score=55.70 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=98.3
Q ss_pred chhHHHHHhhcccCCc-----------cchHHHHHHhhcCCCc-ccccch-hhh----------hHHH-HhhHHHHHHhc
Q psy18155 2 RNVVAECLGKLTLIDP-----------SNLLPRLQESLKSNSA-LMRTTP-QSI----------DPLL-RQTIGDFLSAL 57 (185)
Q Consensus 2 r~vvae~lg~l~~~~~-----------~~~l~~L~~~l~~~~~-~~r~~~-~~~----------d~~L-~~~i~~fl~~l 57 (185)
|.-++.+||.++..++ ...+|.|.+++.+++. .+|..+ ..+ ..+. ...||.++..+
T Consensus 460 ~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL 539 (780)
T 2z6g_A 460 TEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 539 (780)
T ss_dssp HHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHH
Confidence 3446678888876433 2568999999987764 555111 100 0111 24577788887
Q ss_pred cCCChH----------------------HHHHHHHHHHHhhhcCchhhHHhH--HhHHHHHHHHhhcCCCCCchH-----
Q psy18155 58 KDSDLN----------------------VRRVALVAFNSAAHNKPSLVIDLL--DSVLPQLYAETAVKPQSIDPL----- 108 (185)
Q Consensus 58 ~d~d~~----------------------vR~~al~~ln~~~~~kp~ll~~~l--~~~Lp~L~~~t~~~~~~vr~~----- 108 (185)
++.+.+ ++..|+.++...+.. +. .+..+ ...+|.|.+.....++.|+..
T Consensus 540 ~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~-~~-~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 617 (780)
T 2z6g_A 540 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD-IH-NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 617 (780)
T ss_dssp HHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS-HH-HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC-hh-hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 765544 455566666554422 21 12222 236778887777777666541
Q ss_pred ------------HHh--hHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHh-hHhhhhhhhhh
Q psy18155 109 ------------LRQ--TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD-SVLPQLYAETA 162 (185)
Q Consensus 109 ------------L~~--~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~-~llp~Ly~et~ 162 (185)
+.. .+..+...+++++.+||+.|..+|...++++|..++..+. ++++.+|++..
T Consensus 618 ~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~~ 686 (780)
T 2z6g_A 618 CELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 686 (780)
T ss_dssp HHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC-----
T ss_pred HHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCCC
Confidence 111 1346777888999999999999999999999987776664 48888877654
No 51
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.47 E-value=0.043 Score=48.83 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=78.4
Q ss_pred chHHHHHHhhcC-CCccccc------------chhhhhHH-HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhH
Q psy18155 19 NLLPRLQESLKS-NSALMRT------------TPQSIDPL-LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVI 84 (185)
Q Consensus 19 ~~l~~L~~~l~~-~~~~~r~------------~~~~~d~~-L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~ 84 (185)
.++|.|.+++++ .++.+|- ++..-..+ -...||.|+.++++++..+|..|+.+|...+...|..-.
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~ 198 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD 198 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence 578999999974 4566661 11111111 235789999999999999999999999777665554322
Q ss_pred HhHHh-HHHHHHHHhhcCC------------------------CCCch-HHHhhHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 85 DLLDS-VLPQLYAETAVKP------------------------QSIDP-LLRQTIGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 85 ~~l~~-~Lp~L~~~t~~~~------------------------~~vr~-~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
..++. .++.|........ +...- .....+..+...+.+++.+|+..|+.+|...
T Consensus 199 ~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 22222 3444433333221 11110 1122344566788889999999999999888
Q ss_pred hhcChh
Q psy18155 139 AHNKPS 144 (185)
Q Consensus 139 a~~~p~ 144 (185)
+...+.
T Consensus 279 ~~~~~~ 284 (529)
T 3tpo_A 279 TDGPNE 284 (529)
T ss_dssp HSSCHH
T ss_pred hhhhhh
Confidence 776555
No 52
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.40 E-value=0.025 Score=49.25 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=73.9
Q ss_pred cchHHHHHHhhcCCCcccc--------cchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHh
Q psy18155 18 SNLLPRLQESLKSNSALMR--------TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS 89 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~~~r--------~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~ 89 (185)
..+.+.+.+++.+++...| -.+..-+.++ -.+..|..-++|+|+-+|-.||-++...
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I-------------- 131 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQI-------------- 131 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcC--------------
Confidence 3455666667777766555 1111112233 3345556777788888888887777532
Q ss_pred HHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhhh
Q psy18155 90 VLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYA 159 (185)
Q Consensus 90 ~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly~ 159 (185)
.++ +.+.+...++..++.|.+.-||+.|+..........|+++...++++-..+.+
T Consensus 132 -----------~~~---~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d 187 (355)
T 3tjz_B 132 -----------TDS---TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASS 187 (355)
T ss_dssp -----------CCT---TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTC
T ss_pred -----------CCH---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcC
Confidence 111 13444456788899999999999999998888888899888777776665533
No 53
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.89 E-value=0.07 Score=44.21 Aligned_cols=125 Identities=19% Similarity=0.179 Sum_probs=84.1
Q ss_pred CchhHHHHHhhcccCCccchHHHHHH-hhcCCCcccccc-hhhhhHHHH-----hhHHHHHHhccCCChHHHHHHHHHHH
Q psy18155 1 TRNVVAECLGKLTLIDPSNLLPRLQE-SLKSNSALMRTT-PQSIDPLLR-----QTIGDFLSALKDSDLNVRRVALVAFN 73 (185)
Q Consensus 1 ~r~vvae~lg~l~~~~~~~~l~~L~~-~l~~~~~~~r~~-~~~~d~~L~-----~~i~~fl~~l~d~d~~vR~~al~~ln 73 (185)
+|-..+..+|++ . .=+++|+.+.+ ..++.+=.+|+. +..+++++. ..++.|....+|+|..|||.|....-
T Consensus 87 VR~~Av~lLg~~-~-~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~r 164 (240)
T 3l9t_A 87 VRMYAVFLFGYL-S-KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLR 164 (240)
T ss_dssp HHHHHHHHHHHT-T-TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc-c-CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhH
Confidence 367788899999 3 33789999988 445566577744 444555432 25778889999999999999976543
Q ss_pred HhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHH-hccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhh
Q psy18155 74 SAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLS-ALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS 152 (185)
Q Consensus 74 ~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~-~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~ 152 (185)
.... +| ....+.- .+-+++. ...|++.-||++---.|+..+-..|+.|+..+.+
T Consensus 165 pW~~-~~---------------------~~k~dp~---~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 165 IWTN-RP---------------------YFKENPN---EAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp SGGG-ST---------------------TTTTCHH---HHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHhc-cc---------------------hhhcCHH---HHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 2110 01 0011111 1234444 4457788899999999999999999999888764
No 54
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.74 E-value=0.017 Score=54.41 Aligned_cols=96 Identities=15% Similarity=0.147 Sum_probs=69.5
Q ss_pred hhHHHHHhhccc-------CCccchHHHHHHhhcCCCcccccchhh----------hhHHHHh--hHHHHHHhccCCChH
Q psy18155 3 NVVAECLGKLTL-------IDPSNLLPRLQESLKSNSALMRTTPQS----------IDPLLRQ--TIGDFLSALKDSDLN 63 (185)
Q Consensus 3 ~vvae~lg~l~~-------~~~~~~l~~L~~~l~~~~~~~r~~~~~----------~d~~L~~--~i~~fl~~l~d~d~~ 63 (185)
..++.||+.++. ..-..++|.|.+++.++++.+|..+.. +...+.. .++.+..+++|+|..
T Consensus 570 ~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~ 649 (780)
T 2z6g_A 570 EACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG 649 (780)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 456778888764 112467899999999998888843321 1111222 578899999999999
Q ss_pred HHHHHHHHHHHhhhcCchhhHHhHHh-HHHHHHHHh
Q psy18155 64 VRRVALVAFNSAAHNKPSLVIDLLDS-VLPQLYAET 98 (185)
Q Consensus 64 vR~~al~~ln~~~~~kp~ll~~~l~~-~Lp~L~~~t 98 (185)
||+.|..++...++++|...+..+.. +++.+|+.-
T Consensus 650 Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~ 685 (780)
T 2z6g_A 650 VATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 685 (780)
T ss_dssp HHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCC
Confidence 99999999999999999888777644 788888654
No 55
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.36 E-value=0.059 Score=51.17 Aligned_cols=31 Identities=6% Similarity=-0.130 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhh--cCchhhHHhHHhHHHHHHH
Q psy18155 63 NVRRVALVAFNSAAH--NKPSLVIDLLDSVLPQLYA 96 (185)
Q Consensus 63 ~vR~~al~~ln~~~~--~kp~ll~~~l~~~Lp~L~~ 96 (185)
.++..|+.|+++++. .-|.. ....+++.+|+
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~ 236 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE 236 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh
Confidence 799999999998877 34544 33556666665
No 56
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.15 E-value=0.13 Score=47.35 Aligned_cols=110 Identities=19% Similarity=0.252 Sum_probs=74.3
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCc--hhhHHhHHhHHHHHHHHhhcCCCCCch-HH------------
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKP--SLVIDLLDSVLPQLYAETAVKPQSIDP-LL------------ 109 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp--~ll~~~l~~~Lp~L~~~t~~~~~~vr~-~L------------ 109 (185)
++...+..+..++.+++.++|-.||.+++..+...| ..+..|...++..|- .+++..||. .|
T Consensus 326 ~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~---~d~d~~Ir~~aL~lL~~l~~~~Nv 402 (621)
T 2vgl_A 326 LLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALK---TERDVSVRQRAVDLLYAMCDRSNA 402 (621)
T ss_dssp HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHT---TCCCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhc---cCCCHhHHHHHHHHHHHHcChhhH
Confidence 345566667788889999999999999999998876 567777776666652 145455543 11
Q ss_pred HhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhh
Q psy18155 110 RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 110 ~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~L 157 (185)
...+..++.-+.+.|.++|+.+...+...+..-|.-..-+++.++..+
T Consensus 403 ~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll 450 (621)
T 2vgl_A 403 QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLI 450 (621)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 112334555555678899999998888877654444555666666655
No 57
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.05 E-value=0.31 Score=46.41 Aligned_cols=114 Identities=13% Similarity=0.148 Sum_probs=75.8
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhc-----------CchhhHHhHHhHHHHHHHHhhcCC-------CC--
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHN-----------KPSLVIDLLDSVLPQLYAETAVKP-------QS-- 104 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~-----------kp~ll~~~l~~~Lp~L~~~t~~~~-------~~-- 104 (185)
++..+++.++..+.|++..||..|..++..++.+ .+..+.++++.+++.|++...... +.
T Consensus 493 ~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 493 QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 6888889999999999999999999999988764 245688999999999998766531 11
Q ss_pred Cch---------------HHHhhHH---HHHHh-cc-CCCHHHHHHHHHHHHHHhhc-ChhhHHHhHhhHhhhhh
Q psy18155 105 IDP---------------LLRQTIG---DFLSA-LK-DSDLNVRRVALVAFNSAAHN-KPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 105 vr~---------------~L~~~m~---~~l~~-l~-D~d~~Vr~~A~~~L~~~a~~-~p~lv~~~L~~llp~Ly 158 (185)
+-+ ...+.|. .++.. .+ .++...+..++.++...+.. .|....++.+.++|.+.
T Consensus 573 l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~ 647 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFL 647 (960)
T ss_dssp HHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 100 1111111 12222 22 24666665566666665543 66767777788888763
No 58
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.99 E-value=0.17 Score=41.35 Aligned_cols=108 Identities=16% Similarity=0.149 Sum_probs=66.7
Q ss_pred cchHHHHHHhhcCCCc--ccccch-hhh-------h---H-H-HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchh
Q psy18155 18 SNLLPRLQESLKSNSA--LMRTTP-QSI-------D---P-L-LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSL 82 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~--~~r~~~-~~~-------d---~-~-L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~l 82 (185)
.--+|.|.++|.++++ .++..+ ..+ + . + -...||.|+.++++++.++|+.|..++...+...+
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~-- 84 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN-- 84 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH--
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH--
Confidence 4568999999998887 555111 111 1 1 1 23568999999999999999999988854422111
Q ss_pred hHHhHHhHHHHHHHHhhcCCCCCchHHHh--hHHHHHHhccC-CCHHHHHHHHHHHHHHh---hcChhhHHH
Q psy18155 83 VIDLLDSVLPQLYAETAVKPQSIDPLLRQ--TIGDFLSALKD-SDLNVRRVALVAFNSAA---HNKPSLVID 148 (185)
Q Consensus 83 l~~~l~~~Lp~L~~~t~~~~~~vr~~L~~--~m~~~l~~l~D-~d~~Vr~~A~~~L~~~a---~~~p~lv~~ 148 (185)
.-+..+.. -+.+++..++. .+.+++..|..+|...+ .+|+.++..
T Consensus 85 ---------------------~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~ 135 (233)
T 3tt9_A 85 ---------------------DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE 135 (233)
T ss_dssp ---------------------HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH
T ss_pred ---------------------HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc
Confidence 11112211 13466666653 57889999886666654 355555443
No 59
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.98 E-value=0.036 Score=52.32 Aligned_cols=98 Identities=8% Similarity=0.055 Sum_probs=64.2
Q ss_pred cCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCch------------------HHHhhHHHHHHh
Q psy18155 58 KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDP------------------LLRQTIGDFLSA 119 (185)
Q Consensus 58 ~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~------------------~L~~~m~~~l~~ 119 (185)
++++...|.+|+.++.+.+..-+.-..+.++.+++.+-+... +...||. .|.+.+..++.+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~-~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 537 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISI-SNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHA 537 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCC-CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 667888999999999888765443333445555554332222 2222332 233344566678
Q ss_pred ccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhh
Q psy18155 120 LKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 120 l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly 158 (185)
++| ..|+..|+.+|...+...+..+.|+++.++..|.
T Consensus 538 l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~ 574 (963)
T 2x19_B 538 LGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQ 574 (963)
T ss_dssp TTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHH
T ss_pred hCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 854 7899999999999887766667788888877763
No 60
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.93 E-value=0.057 Score=51.27 Aligned_cols=95 Identities=12% Similarity=0.087 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhh--cCCCCCch------------------HHHhhHHHHHHh
Q psy18155 60 SDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETA--VKPQSIDP------------------LLRQTIGDFLSA 119 (185)
Q Consensus 60 ~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~--~~~~~vr~------------------~L~~~m~~~l~~ 119 (185)
++-..|.+|+.++.+.+..-+.-..++++.+++.+ .+.. +....||. .+.+.+..++.+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 554 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRG 554 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 67889999999998887665544456777777733 3332 22333432 334445566677
Q ss_pred ccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhh
Q psy18155 120 LKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 120 l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly 158 (185)
+ | ..|+..|+.+|...+......+.|+++.++..+.
T Consensus 555 l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~ 590 (971)
T 2x1g_F 555 L-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACH 590 (971)
T ss_dssp H-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred h-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 7 4 6799999999999888777778899998887773
No 61
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=94.83 E-value=0.49 Score=40.77 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=50.7
Q ss_pred hhHHHHHhhcccCC-------ccchHHHHHHhhcCCCcccccchh-h-----------hhHH-HHhhHHHHHHhccCCCh
Q psy18155 3 NVVAECLGKLTLID-------PSNLLPRLQESLKSNSALMRTTPQ-S-----------IDPL-LRQTIGDFLSALKDSDL 62 (185)
Q Consensus 3 ~vvae~lg~l~~~~-------~~~~l~~L~~~l~~~~~~~r~~~~-~-----------~d~~-L~~~i~~fl~~l~d~d~ 62 (185)
.-.+.+|+.++... =...+|.|.++++++++.+|..+. . -..+ -...+|.++.++++++.
T Consensus 78 ~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~ 157 (529)
T 1jdh_A 78 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 157 (529)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH
T ss_pred HHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCH
Confidence 34556666655321 125899999999998887771111 0 0111 24578999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q psy18155 63 NVRRVALVAFNSAAHN 78 (185)
Q Consensus 63 ~vR~~al~~ln~~~~~ 78 (185)
++|..+..++...+..
T Consensus 158 ~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 158 KFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999988888655443
No 62
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.72 E-value=0.16 Score=44.49 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=64.3
Q ss_pred hHHHHHHhhcCCCcccccchh-----------hhh-H-HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHh
Q psy18155 20 LLPRLQESLKSNSALMRTTPQ-----------SID-P-LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDL 86 (185)
Q Consensus 20 ~l~~L~~~l~~~~~~~r~~~~-----------~~d-~-~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~ 86 (185)
-+|.|.++|+++++.+|..+. ... . .-...||.++.++++++..+++.|..++...+...+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~------ 76 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST------ 76 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH------
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH------
Confidence 368888888888777661110 011 1 124568999999999999999999888864432211
Q ss_pred HHhHHHHHHHHhhcCCCCCchHHHh--hHHHHHHhcc-CCCHHHHHHHHHHHHHHhhc
Q psy18155 87 LDSVLPQLYAETAVKPQSIDPLLRQ--TIGDFLSALK-DSDLNVRRVALVAFNSAAHN 141 (185)
Q Consensus 87 l~~~Lp~L~~~t~~~~~~vr~~L~~--~m~~~l~~l~-D~d~~Vr~~A~~~L~~~a~~ 141 (185)
..+..+.. -+.+++..++ ..+.+++..|..+|...+..
T Consensus 77 -----------------~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 77 -----------------TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp -----------------HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred -----------------HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 12222211 1456777777 56889999999888777654
No 63
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=94.56 E-value=0.24 Score=42.74 Aligned_cols=142 Identities=11% Similarity=0.075 Sum_probs=84.0
Q ss_pred chhHHHHHhhcccCCc--------cchHHHHHHhhcCCCcccccchh-hh-------hH----HH-HhhHHHHHHhccCC
Q psy18155 2 RNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTPQ-SI-------DP----LL-RQTIGDFLSALKDS 60 (185)
Q Consensus 2 r~vvae~lg~l~~~~~--------~~~l~~L~~~l~~~~~~~r~~~~-~~-------d~----~L-~~~i~~fl~~l~d~ 60 (185)
|..++++|+.++..+. ...+|.|.++++++++.++..+. .+ +. +. ...++.++..++++
T Consensus 118 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~ 197 (529)
T 1jdh_A 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 197 (529)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3456677777766432 46899999999988876663321 01 11 11 23577888888877
Q ss_pred ChHHHHH-HHHHHHHhhhcCchhhHHhHH-hHHHHHHHHhhcCCCCCchH-----------------HHhhHHHHHHhcc
Q psy18155 61 DLNVRRV-ALVAFNSAAHNKPSLVIDLLD-SVLPQLYAETAVKPQSIDPL-----------------LRQTIGDFLSALK 121 (185)
Q Consensus 61 d~~vR~~-al~~ln~~~~~kp~ll~~~l~-~~Lp~L~~~t~~~~~~vr~~-----------------L~~~m~~~l~~l~ 121 (185)
+...++. +..++..... .|..-...++ ..+|.|.+.....+..++.. ....+..++..+.
T Consensus 198 ~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~ 276 (529)
T 1jdh_A 198 TYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG 276 (529)
T ss_dssp CCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHc
Confidence 6665554 4444433332 2322222222 36666666655543332220 1223456777788
Q ss_pred CCCHHHHHHHHHHHHHHhhcChh
Q psy18155 122 DSDLNVRRVALVAFNSAAHNKPS 144 (185)
Q Consensus 122 D~d~~Vr~~A~~~L~~~a~~~p~ 144 (185)
+++.++|..|+.+|...+.+.+.
T Consensus 277 ~~~~~v~~~a~~~L~~L~~~~~~ 299 (529)
T 1jdh_A 277 SDDINVVTCAAGILSNLTCNNYK 299 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCHH
Confidence 89999999999999998776553
No 64
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.26 E-value=0.29 Score=47.54 Aligned_cols=96 Identities=9% Similarity=0.101 Sum_probs=61.5
Q ss_pred hHHHHHhhcccCCccchHHHHHHhhcCCCc-ccc---------------cc--h-------hh---hhHH----HHhhHH
Q psy18155 4 VVAECLGKLTLIDPSNLLPRLQESLKSNSA-LMR---------------TT--P-------QS---IDPL----LRQTIG 51 (185)
Q Consensus 4 vvae~lg~l~~~~~~~~l~~L~~~l~~~~~-~~r---------------~~--~-------~~---~d~~----L~~~i~ 51 (185)
++++++.+..+..||++++.|.++++++++ ... +. + +. -|.+ +..+++
T Consensus 113 ~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~ 192 (980)
T 3ibv_A 113 LLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVS 192 (980)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHH
Confidence 566777777789999999999999975433 111 10 0 00 0000 112244
Q ss_pred HHHHhcc----CCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhc
Q psy18155 52 DFLSALK----DSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAV 100 (185)
Q Consensus 52 ~fl~~l~----d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~ 100 (185)
.+++.+. .++..++..+|.|+++.+.--|.....+ +.+++.+|+..++
T Consensus 193 ~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~l~~~L~~ 244 (980)
T 3ibv_A 193 FVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNLLYSFLQI 244 (980)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHHHHHHcCC
Confidence 4444443 3788899999999999998777655444 6788888876654
No 65
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.13 E-value=0.24 Score=41.44 Aligned_cols=109 Identities=20% Similarity=0.200 Sum_probs=68.8
Q ss_pred cchHHHHHHhhcCCCcccccchhhhhHHH------HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHH
Q psy18155 18 SNLLPRLQESLKSNSALMRTTPQSIDPLL------RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVL 91 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~~~r~~~~~~d~~L------~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~L 91 (185)
..++|.|.+.++++...+|+.++.+-..+ ..+.+.++..+++-+..+|.-.+.++.+.+...-
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G----------- 199 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAG----------- 199 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC-----------
Confidence 46778888888877777776666544422 2344455577777788888777777765542110
Q ss_pred HHHHHHhhcCCCCCchHHHhhH---HHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhh
Q psy18155 92 PQLYAETAVKPQSIDPLLRQTI---GDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS 152 (185)
Q Consensus 92 p~L~~~t~~~~~~vr~~L~~~m---~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~ 152 (185)
.. + .. .+ ..+...++|.|-.||.+|..++.++=.+..+-+..++++
T Consensus 200 -----~~---~----~~---~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 200 -----IS---P----LK---SLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp -----SG---G----GG---GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCC
T ss_pred -----CC---c----cc---cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 00 0 01 23 445568889999999999999888644444445555543
No 66
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.10 E-value=0.64 Score=44.53 Aligned_cols=156 Identities=13% Similarity=0.099 Sum_probs=95.9
Q ss_pred chhHHHHHhhcccCCc-------cchHHHHHHhhcCCCccccc-chh-------hhhH-H------HHhhHHHHHHhccC
Q psy18155 2 RNVVAECLGKLTLIDP-------SNLLPRLQESLKSNSALMRT-TPQ-------SIDP-L------LRQTIGDFLSALKD 59 (185)
Q Consensus 2 r~vvae~lg~l~~~~~-------~~~l~~L~~~l~~~~~~~r~-~~~-------~~d~-~------L~~~i~~fl~~l~d 59 (185)
|.-++++|+.++-... ...+|.|.+++.+.++..|. ++. .-+. . ....||+++.++.+
T Consensus 512 qe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~ 591 (810)
T 3now_A 512 QELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ 591 (810)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC
Confidence 3445667777663211 25688999999888776661 111 0111 1 12368999999985
Q ss_pred C-ChHHHHHHHHHHHHhhhcCchhhHHhHH-hHHHHHHHHhhcCCCCCch-----------------HHH---hhHHHHH
Q psy18155 60 S-DLNVRRVALVAFNSAAHNKPSLVIDLLD-SVLPQLYAETAVKPQSIDP-----------------LLR---QTIGDFL 117 (185)
Q Consensus 60 ~-d~~vR~~al~~ln~~~~~kp~ll~~~l~-~~Lp~L~~~t~~~~~~vr~-----------------~L~---~~m~~~l 117 (185)
. +...+..|+.++...+.+.+..-...++ ..+|.|.+.....++.|++ .+. ..+..++
T Consensus 592 ~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv 671 (810)
T 3now_A 592 DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLA 671 (810)
T ss_dssp TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHH
Confidence 5 4445567888887666554443333333 3678887777777777754 111 1234566
Q ss_pred HhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHh--hHhhhh
Q psy18155 118 SALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD--SVLPQL 157 (185)
Q Consensus 118 ~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~--~llp~L 157 (185)
..++.++.++|++|+.+|..++...+......++ ..+|.|
T Consensus 672 ~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~L 713 (810)
T 3now_A 672 LLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDIL 713 (810)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHH
Confidence 7777789999999999999887645554554444 355555
No 67
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.94 E-value=1.1 Score=36.17 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=50.1
Q ss_pred HHhhHHHHHH-hccCCChHHHHHHHHHHHHhhhcC-c-hhhHHhHHh---------------HHHHHHHHhhcCCCCCch
Q psy18155 46 LRQTIGDFLS-ALKDSDLNVRRVALVAFNSAAHNK-P-SLVIDLLDS---------------VLPQLYAETAVKPQSIDP 107 (185)
Q Consensus 46 L~~~i~~fl~-~l~d~d~~vR~~al~~ln~~~~~k-p-~ll~~~l~~---------------~Lp~L~~~t~~~~~~vr~ 107 (185)
...++|.++. .++|+...+|..|+.++..++..- + ..+.+.+-. +|-.++.+-..+.-....
T Consensus 100 ~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~ 179 (278)
T 4ffb_C 100 ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQT 179 (278)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHH
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchh
Confidence 4456666665 478888889988888887665321 1 111111111 111222221111111111
Q ss_pred HHHhhHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy18155 108 LLRQTIGDFLSALKDSDLNVRRVALVAFNSA 138 (185)
Q Consensus 108 ~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~ 138 (185)
.+...+..+...++|.|.+||.+|...+.+.
T Consensus 180 ~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 180 FLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp HHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 2222333445578899999999999887775
No 68
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=93.84 E-value=0.91 Score=39.63 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=75.2
Q ss_pred hhHHHHHhhcccCCcc--------chHHHHHHhhcCCCcccccchh-hh-------hH----H-HHhhHHHHHHhcc-CC
Q psy18155 3 NVVAECLGKLTLIDPS--------NLLPRLQESLKSNSALMRTTPQ-SI-------DP----L-LRQTIGDFLSALK-DS 60 (185)
Q Consensus 3 ~vvae~lg~l~~~~~~--------~~l~~L~~~l~~~~~~~r~~~~-~~-------d~----~-L~~~i~~fl~~l~-d~ 60 (185)
.-.+++++.++..+.+ ..+|.|.++++++++.+|..+. .+ +. + =..-||.|+.+++ ++
T Consensus 20 ~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~ 99 (457)
T 1xm9_A 20 AIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG 99 (457)
T ss_dssp HHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCC
Confidence 4567788888765543 4689999999998887772111 00 11 1 2355899999999 88
Q ss_pred ChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhc------CCCCCchHHHhhHHHHHHhccC-CCHHHHHHHHH
Q psy18155 61 DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAV------KPQSIDPLLRQTIGDFLSALKD-SDLNVRRVALV 133 (185)
Q Consensus 61 d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~------~~~~vr~~L~~~m~~~l~~l~D-~d~~Vr~~A~~ 133 (185)
+.+++..|..++...+.+ ++.=...++..+|.|.+.... +++.. ..+. .+.+|.+.|+.
T Consensus 100 ~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~-------------~~~e~~~~~v~~~a~~ 165 (457)
T 1xm9_A 100 NAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSN-------------MSREVVDPEVFFNATG 165 (457)
T ss_dssp CHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC----------------------CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccc-------------hhcccccHHHHHHHHH
Confidence 999999998888555433 221111112444544444311 00000 0001 46778888888
Q ss_pred HHHHHhhcChh
Q psy18155 134 AFNSAAHNKPS 144 (185)
Q Consensus 134 ~L~~~a~~~p~ 144 (185)
+|...+.. |.
T Consensus 166 aL~nLs~~-~~ 175 (457)
T 1xm9_A 166 CLRNLSSA-DA 175 (457)
T ss_dssp HHHHHTTS-HH
T ss_pred HHHHHccC-HH
Confidence 87777655 44
No 69
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=93.54 E-value=0.41 Score=44.18 Aligned_cols=105 Identities=12% Similarity=0.129 Sum_probs=65.3
Q ss_pred cCCc-cchHHHHHHhhcCCCcccccch-hhh-------hH----H-HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcC
Q psy18155 14 LIDP-SNLLPRLQESLKSNSALMRTTP-QSI-------DP----L-LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNK 79 (185)
Q Consensus 14 ~~~~-~~~l~~L~~~l~~~~~~~r~~~-~~~-------d~----~-L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~k 79 (185)
...| ..-+|.|.++|.++++.+|-.+ ..+ +. + -...||.|+.++++++.++++.|..+|...+.++
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 4456 4568999999999888777211 111 00 1 2346899999999999999999998886443211
Q ss_pred chhhHHhHHhHHHHHHHHhhcCCCCCchHHHhh--HHHHHHhccC-CCHHHHHHHHHHHHHHhh
Q psy18155 80 PSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQT--IGDFLSALKD-SDLNVRRVALVAFNSAAH 140 (185)
Q Consensus 80 p~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~--m~~~l~~l~D-~d~~Vr~~A~~~L~~~a~ 140 (185)
++..+..+... +.+++..++. .+.+++..|..+|...+.
T Consensus 122 ----------------------~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 122 ----------------------DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp ----------------------CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT
T ss_pred ----------------------CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 11112222111 3455555554 467788888766666554
No 70
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.53 E-value=1.1 Score=40.52 Aligned_cols=126 Identities=10% Similarity=0.082 Sum_probs=75.6
Q ss_pred chHHHHHHhhcCCCcccccchh-hh-------h----HHH-HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHH
Q psy18155 19 NLLPRLQESLKSNSALMRTTPQ-SI-------D----PLL-RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVID 85 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r~~~~-~~-------d----~~L-~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~ 85 (185)
..+|.|.++++++++.+|..+. .+ + .+. ...+|.++.++++++.+++..|+.++...+...+..-..
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~ 177 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 177 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5889999999998887771111 00 1 111 466899999999999999999887776554332221111
Q ss_pred hHH-hHHHHHHHHhhcCCC------------------CCchHHHh--hHHHHHHhccCCCHHHHHHHHHHHHHHhhcChh
Q psy18155 86 LLD-SVLPQLYAETAVKPQ------------------SIDPLLRQ--TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS 144 (185)
Q Consensus 86 ~l~-~~Lp~L~~~t~~~~~------------------~vr~~L~~--~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~ 144 (185)
..+ ..+|.|.+.....+. ..+..+.. -+..++..+++.+..+++.|+.+|...+...+.
T Consensus 178 i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~ 257 (644)
T 2z6h_A 178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 257 (644)
T ss_dssp HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT
T ss_pred HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh
Confidence 111 133333333332211 11222211 144677778888899999999888887765443
No 71
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.50 E-value=0.75 Score=44.94 Aligned_cols=149 Identities=18% Similarity=0.136 Sum_probs=84.8
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhhc-CCCcccccchhhhhH--H----HHhhHHHHH-HhccCCChHHHHHHHHHHH
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESLK-SNSALMRTTPQSIDP--L----LRQTIGDFL-SALKDSDLNVRRVALVAFN 73 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l~-~~~~~~r~~~~~~d~--~----L~~~i~~fl-~~l~d~d~~vR~~al~~ln 73 (185)
|.-.+.+||.+.+.+. +..+.+.+.+. +.++-+|..+.-... + -...|.++| .+..|++.+|||.|+.++.
T Consensus 525 rR~aalgLGll~~g~~-e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLG 603 (963)
T 4ady_A 525 TRGLAVGLALINYGRQ-ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALG 603 (963)
T ss_dssp HHHHHHHHHHHTTTCG-GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhCCCh-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 4457778888776665 45566666664 678888843321111 0 012244455 4556889999999998887
Q ss_pred HhhhcCchhhHHhHHhHHHHHHHHh-hcCCCCCchHHH-------------hhHHHHHHhccCCCHHHHHHHHHHHHHHh
Q psy18155 74 SAAHNKPSLVIDLLDSVLPQLYAET-AVKPQSIDPLLR-------------QTIGDFLSALKDSDLNVRRVALVAFNSAA 139 (185)
Q Consensus 74 ~~~~~kp~ll~~~l~~~Lp~L~~~t-~~~~~~vr~~L~-------------~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a 139 (185)
-..-..|..+. .+++.. ...+..||.-.. .-+.-......|.|..||+.|..+|....
T Consensus 604 lI~~g~~e~v~--------rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 604 FVLLRDYTTVP--------RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHTSSSCSSHH--------HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred hhccCCHHHHH--------HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 65555554332 222221 222333443110 01122223456999999999998888865
Q ss_pred hcChhh----HHHhHhhHhhhhhh
Q psy18155 140 HNKPSL----VIDLLDSVLPQLYA 159 (185)
Q Consensus 140 ~~~p~l----v~~~L~~llp~Ly~ 159 (185)
--..+. +.+.+.++....++
T Consensus 676 ~gtnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 676 IQQTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp TTCCTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCccccchHHHHHHHHHHHHHhc
Confidence 333332 55666666666654
No 72
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=93.32 E-value=0.24 Score=47.69 Aligned_cols=111 Identities=11% Similarity=0.141 Sum_probs=66.2
Q ss_pred HhhHHHHHHhcc--CCChHHHHHHHHHHHHhhhcCchhh-HHhHHhHHHHHHHHhhc-----CCCCCc------------
Q psy18155 47 RQTIGDFLSALK--DSDLNVRRVALVAFNSAAHNKPSLV-IDLLDSVLPQLYAETAV-----KPQSID------------ 106 (185)
Q Consensus 47 ~~~i~~fl~~l~--d~d~~vR~~al~~ln~~~~~kp~ll-~~~l~~~Lp~L~~~t~~-----~~~~vr------------ 106 (185)
..+.+.+-+.+. +.+-..|.+|+.++.+.+.....-. ..+++.+++.|.....- ....++
T Consensus 450 ~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~ 529 (1049)
T 3m1i_C 450 EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPR 529 (1049)
T ss_dssp HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH
Confidence 333333334443 3567788888888887654433222 22355555555442221 111222
Q ss_pred ------hHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHH--------HhHhhHhhhh
Q psy18155 107 ------PLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVI--------DLLDSVLPQL 157 (185)
Q Consensus 107 ------~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~--------~~L~~llp~L 157 (185)
+.|.+.+..++.++.|++..|+..||.+|.+.+...+..+. |+++.++..+
T Consensus 530 ~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l 594 (1049)
T 3m1i_C 530 FLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDI 594 (1049)
T ss_dssp HHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTH
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 13444556777889888999999999999998776454443 7777776655
No 73
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.30 E-value=0.34 Score=47.31 Aligned_cols=109 Identities=10% Similarity=0.120 Sum_probs=76.1
Q ss_pred hHHHHHHhccC--CChHHHHHHHHHHHHhhhcCch-hhHHhHHhHHHHHHHHhhc-----CCCCCch-------------
Q psy18155 49 TIGDFLSALKD--SDLNVRRVALVAFNSAAHNKPS-LVIDLLDSVLPQLYAETAV-----KPQSIDP------------- 107 (185)
Q Consensus 49 ~i~~fl~~l~d--~d~~vR~~al~~ln~~~~~kp~-ll~~~l~~~Lp~L~~~t~~-----~~~~vr~------------- 107 (185)
+++++-+.+.+ ++-..|-+|+.++.+.+.+-.. ...+++.+++|.|...... .+..|+.
T Consensus 452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl 531 (1023)
T 4hat_C 452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL 531 (1023)
T ss_dssp HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH
Confidence 44444455553 6788999999999987765443 4678888888888887653 2223331
Q ss_pred -----HHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhH--------HHhHhhHhhhh
Q psy18155 108 -----LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLV--------IDLLDSVLPQL 157 (185)
Q Consensus 108 -----~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv--------~~~L~~llp~L 157 (185)
.|.+.+.+.+.++.|++..|...||.+|...+......+ .|+++.++..+
T Consensus 532 ~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l 594 (1023)
T 4hat_C 532 KAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDI 594 (1023)
T ss_dssp HHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTH
T ss_pred hccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHH
Confidence 456667788889988889999999999999877544323 24666666555
No 74
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=93.26 E-value=0.28 Score=46.98 Aligned_cols=103 Identities=8% Similarity=0.055 Sum_probs=57.5
Q ss_pred hHHHHHHhhcCCCcccccchh-----------hhhHHH--HhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHh
Q psy18155 20 LLPRLQESLKSNSALMRTTPQ-----------SIDPLL--RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDL 86 (185)
Q Consensus 20 ~l~~L~~~l~~~~~~~r~~~~-----------~~d~~L--~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~ 86 (185)
.+|.|.+++.++++.+|..+. ....+. ...++.++.++++++..+|+.|..++.......+...
T Consensus 624 ~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~--- 700 (810)
T 3now_A 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC--- 700 (810)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH---
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH---
Confidence 566666666666665551111 111112 1345566666777777777777666654422112111
Q ss_pred HHhHHHHHHHHhhcCCCCCchHHH--hhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChh
Q psy18155 87 LDSVLPQLYAETAVKPQSIDPLLR--QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS 144 (185)
Q Consensus 87 l~~~Lp~L~~~t~~~~~~vr~~L~--~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~ 144 (185)
+.++. ..+.++...+.+++.++++.|+.++..++...+.
T Consensus 701 -------------------~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e 741 (810)
T 3now_A 701 -------------------EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEE 741 (810)
T ss_dssp -------------------HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred -------------------HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHH
Confidence 11221 1345666777788999999999888776654454
No 75
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.24 E-value=0.61 Score=45.67 Aligned_cols=140 Identities=15% Similarity=0.289 Sum_probs=102.4
Q ss_pred chHHHHHHhhcCCCcccccchh-hhhHH--------HHhhHHHHHHhccCC-ChHHHHHHHHHHHHhhhcCchhhHHhHH
Q psy18155 19 NLLPRLQESLKSNSALMRTTPQ-SIDPL--------LRQTIGDFLSALKDS-DLNVRRVALVAFNSAAHNKPSLVIDLLD 88 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r~~~~-~~d~~--------L~~~i~~fl~~l~d~-d~~vR~~al~~ln~~~~~kp~ll~~~l~ 88 (185)
.++|.+.+.+.+....+|..+. ..+.+ +..++|.++..+++. .=..+-.||.++...+..-|..+...++
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~ 174 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMP 174 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 3678888888888788884444 22322 567788898888765 4678999999999999877999999999
Q ss_pred hHHHHHHHHhhcCCCCCch-----------------------HHHh------------------------------hHHH
Q psy18155 89 SVLPQLYAETAVKPQSIDP-----------------------LLRQ------------------------------TIGD 115 (185)
Q Consensus 89 ~~Lp~L~~~t~~~~~~vr~-----------------------~L~~------------------------------~m~~ 115 (185)
+++|.+-+...|....|.+ .|.. .|.|
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p 254 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVP 254 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHH
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHH
Confidence 9999999988888776632 1111 1235
Q ss_pred HHH-hccCCCHHHHHHHHHHHHHHh--hcChhhHHHhHhhHhhhhh
Q psy18155 116 FLS-ALKDSDLNVRRVALVAFNSAA--HNKPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 116 ~l~-~l~D~d~~Vr~~A~~~L~~~a--~~~p~lv~~~L~~llp~Ly 158 (185)
++. ++++..-.++|-++..+.-.+ -..|..+.++|++++|.|.
T Consensus 255 ~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~ 300 (986)
T 2iw3_A 255 LLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK 300 (986)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHH
T ss_pred HHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHH
Confidence 553 777777777777775544433 3458889999999999994
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.15 E-value=0.8 Score=39.65 Aligned_cols=77 Identities=16% Similarity=0.096 Sum_probs=54.2
Q ss_pred HHHHHHhhcCCCcccccch-----hhhhH-HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHH
Q psy18155 21 LPRLQESLKSNSALMRTTP-----QSIDP-LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 94 (185)
Q Consensus 21 l~~L~~~l~~~~~~~r~~~-----~~~d~-~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L 94 (185)
...|++=++++++-+|..+ ...+. ++.++.+.+-+++.|.++-||+.|+.|..-..+..|.++. .|+..+
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~----~~~~~l 181 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK----RWVNEA 181 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH----TTHHHH
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH----HHHHHH
Confidence 4555666677888777332 22233 5788888999999999999999999998877777777654 355555
Q ss_pred HHHhhcC
Q psy18155 95 YAETAVK 101 (185)
Q Consensus 95 ~~~t~~~ 101 (185)
.+...++
T Consensus 182 ~~ll~d~ 188 (355)
T 3tjz_B 182 QEAASSD 188 (355)
T ss_dssp HHHTTCS
T ss_pred HHHhcCC
Confidence 5555444
No 77
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=92.75 E-value=0.97 Score=38.66 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=70.7
Q ss_pred cchHHHHHHhhcCCCcc----ccc-chh------h----hhH----HH-HhhHHHHHHhccCCChHHHHHHHHHHHHhhh
Q psy18155 18 SNLLPRLQESLKSNSAL----MRT-TPQ------S----IDP----LL-RQTIGDFLSALKDSDLNVRRVALVAFNSAAH 77 (185)
Q Consensus 18 ~~~l~~L~~~l~~~~~~----~r~-~~~------~----~d~----~L-~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~ 77 (185)
...+|.|.+++.++++. ++. ... . -+. +. ...||.++..+++++..+++.|..++...+.
T Consensus 213 ~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 213 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 292 (354)
T ss_dssp TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC
Confidence 46789999999866542 331 110 0 111 11 2468899999999999999999988865532
Q ss_pred cCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHh--hHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHH
Q psy18155 78 NKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQ--TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVI 147 (185)
Q Consensus 78 ~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~--~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~ 147 (185)
..+. .+..+.. .+.++...++..+..+|+.|+.+|...+.+.|....
T Consensus 293 ~~~~-----------------------~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 293 RNPK-----------------------DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp SCHH-----------------------HHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CCHH-----------------------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 2111 1112211 245667777778999999999999999988888544
No 78
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=92.62 E-value=0.87 Score=41.20 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=63.4
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhH--HhHHHHHHHHhhcC-CCCCch----HHH----------
Q psy18155 48 QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLL--DSVLPQLYAETAVK-PQSIDP----LLR---------- 110 (185)
Q Consensus 48 ~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l--~~~Lp~L~~~t~~~-~~~vr~----~L~---------- 110 (185)
..||.++.+++++|..+|..|+.++...+.+.+.-. ..+ ...++.|.+..... +..++. .|.
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~-~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH-AIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHH-HHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHH-HHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 357888899999999999999999988877665321 111 23555555554432 223322 111
Q ss_pred -----hhHHHHHHhccCCCHHHHHHHHHHHHHHhhcCh
Q psy18155 111 -----QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKP 143 (185)
Q Consensus 111 -----~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p 143 (185)
..+..++..+++++..++..|+.+|...+...+
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~ 130 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 130 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Confidence 123477788888999999999999988876543
No 79
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=92.15 E-value=0.41 Score=39.58 Aligned_cols=99 Identities=21% Similarity=0.226 Sum_probs=73.9
Q ss_pred CchhHHHHHhhccc-CCccchHHHHHHhhcCCCcccccchh---------hhhH-HHHhhHHHHHHhccCCChHHHHHHH
Q psy18155 1 TRNVVAECLGKLTL-IDPSNLLPRLQESLKSNSALMRTTPQ---------SIDP-LLRQTIGDFLSALKDSDLNVRRVAL 69 (185)
Q Consensus 1 ~r~vvae~lg~l~~-~~~~~~l~~L~~~l~~~~~~~r~~~~---------~~d~-~L~~~i~~fl~~l~d~d~~vR~~al 69 (185)
+|-++|..+|.++. .++...++.+.+-.+++++.+|-.+. .... ..+.++|-+-....|++.-||++.=
T Consensus 120 Vre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVa 199 (240)
T 3l9t_A 120 VQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVG 199 (240)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHH
Confidence 46788999999997 77777899999999999999992222 1111 2344555555788899999999998
Q ss_pred HHHHHhhhcCchhhHHhHHh------HHHHHHHHhh
Q psy18155 70 VAFNSAAHNKPSLVIDLLDS------VLPQLYAETA 99 (185)
Q Consensus 70 ~~ln~~~~~kp~ll~~~l~~------~Lp~L~~~t~ 99 (185)
..||-.....|..++..+.. -.+.+|++++
T Consensus 200 n~LrD~SK~~Pd~V~~~~~~w~~~~~~~~~i~k~A~ 235 (240)
T 3l9t_A 200 NALRDISKKFPDLVKIELKNWKLESKEINQVYKLAS 235 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCCSHHHHHHHHHHT
T ss_pred HHHHHHhhhCHHHHHHHHHHhhccCHhHHHHHHHHH
Confidence 99998888888888887764 4455555543
No 80
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=92.08 E-value=4.8 Score=34.25 Aligned_cols=153 Identities=21% Similarity=0.218 Sum_probs=91.7
Q ss_pred hhHHHHHhhcccCCc---------cchHHHHHHhhcCCCcccccchh------hh---hH----HH-HhhHHHHHHh-cc
Q psy18155 3 NVVAECLGKLTLIDP---------SNLLPRLQESLKSNSALMRTTPQ------SI---DP----LL-RQTIGDFLSA-LK 58 (185)
Q Consensus 3 ~vvae~lg~l~~~~~---------~~~l~~L~~~l~~~~~~~r~~~~------~~---d~----~L-~~~i~~fl~~-l~ 58 (185)
.-++.+|+.++..+. ..++|.|.++++++++.+|..+. .. +. +. ...||.++.. ++
T Consensus 102 ~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~ 181 (354)
T 3nmw_A 102 RYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE 181 (354)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhc
Confidence 346777888876543 12499999999999887772111 00 11 12 2458888886 56
Q ss_pred CCChHHHHHHHHHHHHhhh----cCchhhHHhHHhHHHHHHHHhhcCCCC----Cch---------------------HH
Q psy18155 59 DSDLNVRRVALVAFNSAAH----NKPSLVIDLLDSVLPQLYAETAVKPQS----IDP---------------------LL 109 (185)
Q Consensus 59 d~d~~vR~~al~~ln~~~~----~kp~ll~~~l~~~Lp~L~~~t~~~~~~----vr~---------------------~L 109 (185)
+.+..+++.|+.++-.... +|+..+. -...+|.|-+.....++. +.+ .+
T Consensus 182 ~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~--~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i 259 (354)
T 3nmw_A 182 VKKESTLKSVLSALWNLSAHCTENKADICA--VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL 259 (354)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHccChhhhHHHHH--hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7889999988777643332 3333321 123566666655544332 221 11
Q ss_pred Hh--hHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHh-hHhhhh
Q psy18155 110 RQ--TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD-SVLPQL 157 (185)
Q Consensus 110 ~~--~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~-~llp~L 157 (185)
.. .+.+++..+++.+.++++.|+.+|...+...+.-.....+ ..+|.|
T Consensus 260 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~L 310 (354)
T 3nmw_A 260 RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310 (354)
T ss_dssp HTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHH
T ss_pred HHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence 11 1346778888889999999999999987554553333322 245555
No 81
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=92.03 E-value=1.3 Score=40.88 Aligned_cols=115 Identities=10% Similarity=0.086 Sum_probs=68.3
Q ss_pred hHHHHHhhcccCCcc------------chHHHHHHhhcCCCcccccch-----------hhhhHHHHhhHHHHHHhccCC
Q psy18155 4 VVAECLGKLTLIDPS------------NLLPRLQESLKSNSALMRTTP-----------QSIDPLLRQTIGDFLSALKDS 60 (185)
Q Consensus 4 vvae~lg~l~~~~~~------------~~l~~L~~~l~~~~~~~r~~~-----------~~~d~~L~~~i~~fl~~l~d~ 60 (185)
-++.+|+.++..+|+ ..+|.|.+++.+++..++..+ ..-+.+=...||++++.+.++
T Consensus 328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~ 407 (584)
T 3l6x_A 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGG 407 (584)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCC
Confidence 356778888777664 458999999998887776111 111112356788999999877
Q ss_pred --------ChHHHHHHHHHHHHhhhcCchhhHHhHHh-HHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCC--CHHHHH
Q psy18155 61 --------DLNVRRVALVAFNSAAHNKPSLVIDLLDS-VLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDS--DLNVRR 129 (185)
Q Consensus 61 --------d~~vR~~al~~ln~~~~~kp~ll~~~l~~-~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~--d~~Vr~ 129 (185)
...+...|+.+++..+...+.-....++. .+ ..+...+.+. ...+++
T Consensus 408 ~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I----------------------~~Lv~LL~s~~~~~~v~k 465 (584)
T 3l6x_A 408 QQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI----------------------EKLVLINKSGNRSEKEVR 465 (584)
T ss_dssp SCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH----------------------HHHHHHHTCSSSCHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCh----------------------HHHHHHHhCCCCChHHHH
Confidence 35677778777754433333222222211 22 3344444332 667777
Q ss_pred HHHHHHHHHhh
Q psy18155 130 VALVAFNSAAH 140 (185)
Q Consensus 130 ~A~~~L~~~a~ 140 (185)
+|+..|.....
T Consensus 466 ~Aa~vL~nl~~ 476 (584)
T 3l6x_A 466 AAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 77777766654
No 82
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=91.91 E-value=0.77 Score=43.19 Aligned_cols=35 Identities=9% Similarity=0.007 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHHhhcCh-hhHHHhHhhHhhhhh
Q psy18155 124 DLNVRRVALVAFNSAAHNKP-SLVIDLLDSVLPQLY 158 (185)
Q Consensus 124 d~~Vr~~A~~~L~~~a~~~p-~lv~~~L~~llp~Ly 158 (185)
+.+.+..++.++...+...| .-..++++.+++++.
T Consensus 583 ~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~ 618 (963)
T 2x19_B 583 KTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYI 618 (963)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 45566666666666655443 455667777776663
No 83
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.38 E-value=0.1 Score=43.73 Aligned_cols=74 Identities=23% Similarity=0.274 Sum_probs=50.6
Q ss_pred chhHHHHHhhcccCCccc-hHHHHHHhhcCCCcccccc-----hhhhhHH---HHhhH---HHHHHhccCCChHHHHHHH
Q psy18155 2 RNVVAECLGKLTLIDPSN-LLPRLQESLKSNSALMRTT-----PQSIDPL---LRQTI---GDFLSALKDSDLNVRRVAL 69 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~-~l~~L~~~l~~~~~~~r~~-----~~~~d~~---L~~~i---~~fl~~l~d~d~~vR~~al 69 (185)
|+-+-+++-.+.-.-+|. +.+.+.+.++|.+..+|.. ..-++.+ -...+ |....+++|+|..||.+|+
T Consensus 149 R~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl 228 (266)
T 2of3_A 149 RTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAI 228 (266)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHH
Confidence 555666666666555554 9999999999988877711 1111111 12234 6667999999999999999
Q ss_pred HHHHHh
Q psy18155 70 VAFNSA 75 (185)
Q Consensus 70 ~~ln~~ 75 (185)
.|+..+
T Consensus 229 ~~lve~ 234 (266)
T 2of3_A 229 NVLVAC 234 (266)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 84
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=91.04 E-value=0.95 Score=42.41 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=53.2
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhh--HHHHHHhccCCCHH
Q psy18155 49 TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQT--IGDFLSALKDSDLN 126 (185)
Q Consensus 49 ~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~--m~~~l~~l~D~d~~ 126 (185)
-|+-++.+++..|..+|-.|+.++.....++|.-++..+ |... ++.++..++|+.+.
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~I---------------------l~~p~gi~~Lv~lL~d~rE~ 181 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQII---------------------LVSPMGVSRLMDLLADSREV 181 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHH---------------------HHSTTHHHHHHGGGGCSSHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHH---------------------HhCcccHHHHHHHHhCchHH
Confidence 377888999999999999999999999888887555543 2111 23555666666666
Q ss_pred HHHHHHHHHHHHhhcChh
Q psy18155 127 VRRVALVAFNSAAHNKPS 144 (185)
Q Consensus 127 Vr~~A~~~L~~~a~~~p~ 144 (185)
||-+|...|.+.....++
T Consensus 182 iRneallLL~~Lt~~n~~ 199 (651)
T 3grl_A 182 IRNDGVLLLQALTRSNGA 199 (651)
T ss_dssp HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCCHH
Confidence 666666666666555555
No 85
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=89.94 E-value=4.7 Score=33.58 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=85.3
Q ss_pred chHHHHHHhhcCCCcccc------------cchhhhhH-HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHH
Q psy18155 19 NLLPRLQESLKSNSALMR------------TTPQSIDP-LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVID 85 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r------------~~~~~~d~-~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~ 85 (185)
+.+..|.+++.+.++.++ ..+..++. .+.-+++.++..++++|.+|--.|+-|++..+.+-|-. -+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-SK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-HH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-HH
Confidence 466777788877776666 33344444 47888999999999999999999999999887665521 11
Q ss_pred hHHhHHHHHHHHhhcCCCCCchHHHh-------------hHHHHHHhccCCCHHHHHHHHHHHHHHhhcC--hhhHHHhH
Q psy18155 86 LLDSVLPQLYAETAVKPQSIDPLLRQ-------------TIGDFLSALKDSDLNVRRVALVAFNSAAHNK--PSLVIDLL 150 (185)
Q Consensus 86 ~l~~~Lp~L~~~t~~~~~~vr~~L~~-------------~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~--p~lv~~~L 150 (185)
....+.-+|-.-.+.+.+..+....+ -++....-+...|..++-+|+.+|.+.++.. |.++...+
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~ 191 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLIL 191 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTT
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 12222222222222222211111111 1334555567789999999998888877743 45555555
Q ss_pred hhHhhhh
Q psy18155 151 DSVLPQL 157 (185)
Q Consensus 151 ~~llp~L 157 (185)
+++-..|
T Consensus 192 ~eI~elL 198 (265)
T 3b2a_A 192 DEIPSLL 198 (265)
T ss_dssp TTHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 86
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=89.52 E-value=11 Score=33.42 Aligned_cols=152 Identities=23% Similarity=0.251 Sum_probs=91.3
Q ss_pred hHHHHHhhcccCCc---------cchHHHHHHhhcCCCcccccchh------hh---hH----HH-HhhHHHHHHh-ccC
Q psy18155 4 VVAECLGKLTLIDP---------SNLLPRLQESLKSNSALMRTTPQ------SI---DP----LL-RQTIGDFLSA-LKD 59 (185)
Q Consensus 4 vvae~lg~l~~~~~---------~~~l~~L~~~l~~~~~~~r~~~~------~~---d~----~L-~~~i~~fl~~-l~d 59 (185)
-++++|+.++..+. ..++|.|.+++.++++.++..+. .. +. +. ...||.++.. +++
T Consensus 219 ~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s 298 (458)
T 3nmz_A 219 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV 298 (458)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC
Confidence 45677888876543 12489999999998888772111 00 11 22 2458888886 566
Q ss_pred CChHHHHHHHHHH-HHhhh---cCchhhHHhHHhHHHHHHHHhhcCCCC----Cch---------------------HHH
Q psy18155 60 SDLNVRRVALVAF-NSAAH---NKPSLVIDLLDSVLPQLYAETAVKPQS----IDP---------------------LLR 110 (185)
Q Consensus 60 ~d~~vR~~al~~l-n~~~~---~kp~ll~~~l~~~Lp~L~~~t~~~~~~----vr~---------------------~L~ 110 (185)
.+..+++.|+.++ |-+.| +|+.++. -...+|.|.+.....++. +.+ .+.
T Consensus 299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~--~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~ 376 (458)
T 3nmz_A 299 KKESTLKSVLSALWNLSAHCTENKADICA--VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 376 (458)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHH--STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHH--hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 7899999887776 33332 3443321 123566666555544332 221 111
Q ss_pred h--hHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHHhHh-hHhhhh
Q psy18155 111 Q--TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD-SVLPQL 157 (185)
Q Consensus 111 ~--~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~-~llp~L 157 (185)
. .+.+++..+.+.+.++++.|+.+|...+...+.-.....+ ..+|.|
T Consensus 377 ~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~L 426 (458)
T 3nmz_A 377 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 426 (458)
T ss_dssp HTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHH
T ss_pred HcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 0 1346778888889999999999999887544553333332 355555
No 87
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.14 E-value=3.1 Score=40.73 Aligned_cols=140 Identities=14% Similarity=0.225 Sum_probs=89.2
Q ss_pred chHHHHHHhhcCCCcccc------------cchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCch-hhHH
Q psy18155 19 NLLPRLQESLKSNSALMR------------TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS-LVID 85 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r------------~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~-ll~~ 85 (185)
.++..|.+.+.+...... ......+.|+-+++|..+.+..|-+..||++|-.+..+.+..-|. .+
T Consensus 54 ~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-- 131 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-- 131 (986)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH--
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH--
Confidence 677777777765321111 122345667778899999999999999999999888877655544 44
Q ss_pred hHHhHHHHHHHHhhcCCC-CC---------------chHHHhhHH---H-HHHhccCCCHHHHHHHHHHHHHHhhc--Ch
Q psy18155 86 LLDSVLPQLYAETAVKPQ-SI---------------DPLLRQTIG---D-FLSALKDSDLNVRRVALVAFNSAAHN--KP 143 (185)
Q Consensus 86 ~l~~~Lp~L~~~t~~~~~-~v---------------r~~L~~~m~---~-~l~~l~D~d~~Vr~~A~~~L~~~a~~--~p 143 (185)
..+||.||.......- .. ...+.-.|. | +-.++-|.-.+|+++|..++.+.+.. ..
T Consensus 132 --~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~ 209 (986)
T 2iw3_A 132 --KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 209 (986)
T ss_dssp --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT
T ss_pred --HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc
Confidence 4566666665533221 00 111111222 3 44688899999999999888887652 23
Q ss_pred hhHHHhHhhHhhhhhhhhhh
Q psy18155 144 SLVIDLLDSVLPQLYAETAV 163 (185)
Q Consensus 144 ~lv~~~L~~llp~Ly~et~v 163 (185)
+ |.++++.++..+.+-..+
T Consensus 210 d-~~~~~~~~~~~~~~p~~~ 228 (986)
T 2iw3_A 210 D-IERFIPSLIQCIADPTEV 228 (986)
T ss_dssp T-TGGGHHHHHHHHHCTTHH
T ss_pred c-hhhhHHHHHHHhcChhhh
Confidence 3 567777777776544333
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=88.32 E-value=0.61 Score=37.77 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=69.6
Q ss_pred cchHHHHHHh-hcCCCcccccchhh-hhHH------HHhhHHHHHHhccCCChHHHHHHHHHHHHhhhc---CchhhHHh
Q psy18155 18 SNLLPRLQES-LKSNSALMRTTPQS-IDPL------LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHN---KPSLVIDL 86 (185)
Q Consensus 18 ~~~l~~L~~~-l~~~~~~~r~~~~~-~d~~------L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~---kp~ll~~~ 86 (185)
..++|.|.+. +.++.+.+|+.+.. +..+ ...++..++..+++-++++|..++.++..++.. +..-....
T Consensus 101 ~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~ 180 (278)
T 4ffb_C 101 STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTF 180 (278)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHH
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhH
Confidence 3578888886 78877777744321 1111 344556667899999999999999999887754 22224556
Q ss_pred HHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhcc
Q psy18155 87 LDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALK 121 (185)
Q Consensus 87 l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~ 121 (185)
++.+++.+.+...+.+..||+-=...++.+...++
T Consensus 181 l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 181 LPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 77788888888999999999843334444443443
No 89
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=88.13 E-value=9.3 Score=37.68 Aligned_cols=97 Identities=10% Similarity=0.136 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHhhhcC--chh---hHHhH-HhHHHHHHHHhhcCC-CCC-------ch-------------------
Q psy18155 61 DLNVRRVALVAFNSAAHNK--PSL---VIDLL-DSVLPQLYAETAVKP-QSI-------DP------------------- 107 (185)
Q Consensus 61 d~~vR~~al~~ln~~~~~k--p~l---l~~~l-~~~Lp~L~~~t~~~~-~~v-------r~------------------- 107 (185)
+..+|..|+.|++..+..+ |+- +...+ +.++..+|+.+...+ ..+ .+
T Consensus 260 ~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~ 339 (1204)
T 3a6p_A 260 EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGA 339 (1204)
T ss_dssp CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999998766 332 22344 345667888753111 111 11
Q ss_pred --------HHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhc----ChhhHHHhHhhHhhhh
Q psy18155 108 --------LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHN----KPSLVIDLLDSVLPQL 157 (185)
Q Consensus 108 --------~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~----~p~lv~~~L~~llp~L 157 (185)
.+...+..++..+++++.+|...++..-.+.... +...+.++++++++.+
T Consensus 340 ~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl 401 (1204)
T 3a6p_A 340 DSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRAS 401 (1204)
T ss_dssp CSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHH
T ss_pred cccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 1123345677788888999999888655543322 2234678888888877
No 90
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=87.07 E-value=2.6 Score=37.39 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=51.7
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHh--hHHHHHHhccCCCH
Q psy18155 48 QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQ--TIGDFLSALKDSDL 125 (185)
Q Consensus 48 ~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~--~m~~~l~~l~D~d~ 125 (185)
..||.++.++++++..+++.|..++...+...+. .+..+.. .+.++...+...+.
T Consensus 379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~-----------------------~~~~i~~~G~I~~Lv~LL~s~~~ 435 (458)
T 3nmz_A 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-----------------------DQEALWDMGAVSMLKNLIHSKHK 435 (458)
T ss_dssp THHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH-----------------------HHHHHHHHTHHHHHHTTTTCSSH
T ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH-----------------------HHHHHHHCCCHHHHHHHHhCCCH
Confidence 4578888888888888888888887544311111 1112211 24567777777899
Q ss_pred HHHHHHHHHHHHHhhcChh
Q psy18155 126 NVRRVALVAFNSAAHNKPS 144 (185)
Q Consensus 126 ~Vr~~A~~~L~~~a~~~p~ 144 (185)
.+++.|+.+|...+.++|.
T Consensus 436 ~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 436 MIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHHHcCCHh
Confidence 9999999999999888776
No 91
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=86.98 E-value=6.5 Score=32.37 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=15.4
Q ss_pred HHHHhccCCCHHHHHHHHHHHHH
Q psy18155 115 DFLSALKDSDLNVRRVALVAFNS 137 (185)
Q Consensus 115 ~~l~~l~D~d~~Vr~~A~~~L~~ 137 (185)
.++.....++..||..|...+-.
T Consensus 148 ~Il~~~~s~n~gvkl~~iKF~e~ 170 (257)
T 3gs3_A 148 QILDMIDNENDGIRTNAIKFLEG 170 (257)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHH
T ss_pred HHHHHHccCCcchHHHHHHHHHH
Confidence 55566655778888888744444
No 92
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=86.62 E-value=1.8 Score=41.63 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=51.4
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhH--------HhHHhHHHHHHHHhhcCCCCCchHHHhhHHHH
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVI--------DLLDSVLPQLYAETAVKPQSIDPLLRQTIGDF 116 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~--------~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~ 116 (185)
++..+++.++..+.|+++.||..|-.++..++..-+..+. ++++.++..+.+....-+..-...+...++.+
T Consensus 537 ~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~i 616 (1049)
T 3m1i_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4788889999999999999999999999888766454443 77888887776655432111112333344555
Q ss_pred HHhc
Q psy18155 117 LSAL 120 (185)
Q Consensus 117 l~~l 120 (185)
+...
T Consensus 617 i~~~ 620 (1049)
T 3m1i_C 617 ISEE 620 (1049)
T ss_dssp HHTC
T ss_pred HHcC
Confidence 5544
No 93
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=86.52 E-value=1.4 Score=40.76 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=49.4
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHH-Hh-hHHHHHH-hccCCCH
Q psy18155 49 TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLL-RQ-TIGDFLS-ALKDSDL 125 (185)
Q Consensus 49 ~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L-~~-~m~~~l~-~l~D~d~ 125 (185)
-|.++++.++++|++.|..|..++...+.+ | .-++.+ .. -+.+++. .+.|++.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~-~-----------------------~~~~l~~~~~~v~~ll~~lL~D~~~ 90 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQD-A-----------------------KCRKLLLREQVVHIVLTETLTDNNI 90 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTS-H-----------------------HHHHHHHHTTHHHHHHHTTTTCSCH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcC-c-----------------------HHHHHHHHcCCHHHHHHHHcCCCCH
Confidence 355678889999999999999999855431 1 111111 11 2345444 5789999
Q ss_pred HHHHHHHHHHHHHhhc-Chhh
Q psy18155 126 NVRRVALVAFNSAAHN-KPSL 145 (185)
Q Consensus 126 ~Vr~~A~~~L~~~a~~-~p~l 145 (185)
+||.+|+.+|-..+.. -+.+
T Consensus 91 ~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 91 DSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHhhcCchH
Confidence 9999999999776544 3453
No 94
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=86.32 E-value=2.4 Score=41.79 Aligned_cols=50 Identities=14% Similarity=0.316 Sum_probs=37.5
Q ss_pred HHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhH--------HHhHhhHhhhh
Q psy18155 108 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLV--------IDLLDSVLPQL 157 (185)
Q Consensus 108 ~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv--------~~~L~~llp~L 157 (185)
.|.+.+.+.+..+.|++.+|..+||.+|...+......+ .|+++.++..+
T Consensus 563 ~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~ 620 (1073)
T 3gjx_A 563 FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNI 620 (1073)
T ss_dssp HHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence 566777888899999999999999999999877665533 23555555544
No 95
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=85.50 E-value=2 Score=42.39 Aligned_cols=93 Identities=17% Similarity=0.246 Sum_probs=55.4
Q ss_pred HHHHHHhc---cCCChHHHHHHHHHHH---HhhhcCchhhHHhHHhHHHHHHHHhhcCCCC-CchHHHhhHHHHHHhccC
Q psy18155 50 IGDFLSAL---KDSDLNVRRVALVAFN---SAAHNKPSLVIDLLDSVLPQLYAETAVKPQS-IDPLLRQTIGDFLSALKD 122 (185)
Q Consensus 50 i~~fl~~l---~d~d~~vR~~al~~ln---~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~-vr~~L~~~m~~~l~~l~D 122 (185)
+|.+++.+ +..++.+|..++.|+. ......|+ .+..+|..||....+.... .+. .-++
T Consensus 531 ~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~----~L~~vL~~ll~~l~~~~~~~~~~-----------~~~~ 595 (1204)
T 3a6p_A 531 GIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPE----FLPQVFSKLFSSVTFETVEESKA-----------PRTR 595 (1204)
T ss_dssp HHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGG----GHHHHHHHHHHHHHCCTTCSTTS-----------CCCH
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCch----HHHHHHHHHHHhhccCCcccccc-----------cccH
Confidence 55666543 4568889988888764 23344453 2333333333332221110 000 0001
Q ss_pred CCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhh
Q psy18155 123 SDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157 (185)
Q Consensus 123 ~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~L 157 (185)
..-+||+.|+..|...+...|..+.++++.+...+
T Consensus 596 ~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~ 630 (1204)
T 3a6p_A 596 AVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHV 630 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34579999999999999999998889999777755
No 96
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=83.09 E-value=22 Score=32.60 Aligned_cols=63 Identities=29% Similarity=0.396 Sum_probs=41.5
Q ss_pred chHHHHHHhhcCCCccccc-chhhhh---------H-HH-HhhHHHHH-HhccCCChHHHHHHHHHH-HHhhhcCchh
Q psy18155 19 NLLPRLQESLKSNSALMRT-TPQSID---------P-LL-RQTIGDFL-SALKDSDLNVRRVALVAF-NSAAHNKPSL 82 (185)
Q Consensus 19 ~~l~~L~~~l~~~~~~~r~-~~~~~d---------~-~L-~~~i~~fl-~~l~d~d~~vR~~al~~l-n~~~~~kp~l 82 (185)
.++|-|. .++|+++..|. ....+- + ++ ...|+..+ .++.|++..||..|..+| |-+++..+..
T Consensus 35 ~i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILPVLK-DLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHHHHH-HHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHHH-HcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 5677664 58999999881 111111 1 12 34566665 679999999999999999 4455555554
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=82.61 E-value=0.85 Score=44.24 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=62.3
Q ss_pred CCChHHHHHHHHHHHHhhhcCchhh------HHhHHhHHHHHHHHhh-----cCCCCCc------------------hHH
Q psy18155 59 DSDLNVRRVALVAFNSAAHNKPSLV------IDLLDSVLPQLYAETA-----VKPQSID------------------PLL 109 (185)
Q Consensus 59 d~d~~vR~~al~~ln~~~~~kp~ll------~~~l~~~Lp~L~~~t~-----~~~~~vr------------------~~L 109 (185)
+++=..+-+||.++.+++-.-+.-. .++++.+++.+.+... +..+.|+ +.|
T Consensus 454 ~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l 533 (980)
T 3ibv_A 454 ENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAI 533 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTH
T ss_pred CCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 3456678888888887765433211 1233334444433322 2223332 155
Q ss_pred HhhHHHHHH--hccCCCHHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhh
Q psy18155 110 RQTIGDFLS--ALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLY 158 (185)
Q Consensus 110 ~~~m~~~l~--~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly 158 (185)
.+.+.+|+. ++.+++..||..|+.+|..........+.++++.++-.+-
T Consensus 534 ~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~ 584 (980)
T 3ibv_A 534 PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLG 584 (980)
T ss_dssp HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTT
T ss_pred HHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence 666788888 9988899999999999999766555545677776666553
No 98
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=82.29 E-value=12 Score=32.71 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=14.5
Q ss_pred HHHHhccCCCHHHHHHHHHHHHH
Q psy18155 115 DFLSALKDSDLNVRRVALVAFNS 137 (185)
Q Consensus 115 ~~l~~l~D~d~~Vr~~A~~~L~~ 137 (185)
.++.....++..||..|.-.+-.
T Consensus 158 ~Il~~~ds~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 158 DIILLLDSDNDGIRTHAIKFVEG 180 (386)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcchHHHHHHHHHH
Confidence 55555655677888888744443
No 99
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=82.21 E-value=0.45 Score=39.00 Aligned_cols=90 Identities=20% Similarity=0.267 Sum_probs=52.5
Q ss_pred HHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCC
Q psy18155 24 LQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQ 103 (185)
Q Consensus 24 L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~ 103 (185)
|..+++++++.+|..+.. . + -.+-+..+++|++..||+.+...+. + +.|-..+.|.+.
T Consensus 127 L~~L~~D~d~~VR~~aA~--~-l--~~~~l~~l~~D~d~~VR~~aa~~l~------~-----------~ll~~ll~D~d~ 184 (244)
T 1lrv_A 127 LEQMAADRDYLVRAYVVQ--R-I--PPGRLFRFMRDEDRQVRKLVAKRLP------E-----------ESLGLMTQDPEP 184 (244)
T ss_dssp GGGGTTCSSHHHHHHHHH--H-S--CGGGGGGTTTCSCHHHHHHHHHHSC------G-----------GGGGGSTTCSSH
T ss_pred HHHHHcCCCHHHHHHHHH--h-c--CHHHHHHHHcCCCHHHHHHHHHcCC------H-----------HHHHHHHcCCCH
Confidence 445677888888844332 1 0 0112337888999999998866411 1 122234566666
Q ss_pred CCchHHHhhHH--HHHHhccCCCHHHHHHHHHHH
Q psy18155 104 SIDPLLRQTIG--DFLSALKDSDLNVRRVALVAF 135 (185)
Q Consensus 104 ~vr~~L~~~m~--~~l~~l~D~d~~Vr~~A~~~L 135 (185)
.||.-....+. .+...++|++..||..+...+
T Consensus 185 ~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 185 EVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp HHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHS
T ss_pred HHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcC
Confidence 67664333332 334456788888888887654
No 100
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.70 E-value=3.9 Score=39.98 Aligned_cols=102 Identities=22% Similarity=0.223 Sum_probs=68.5
Q ss_pred chhHHHHHhhcccCCccchHHHHHHhh-cCCCcccccchh-hhhHH-----HHhhHHHHHHhccCCChHHHHHHHHHHHH
Q psy18155 2 RNVVAECLGKLTLIDPSNLLPRLQESL-KSNSALMRTTPQ-SIDPL-----LRQTIGDFLSALKDSDLNVRRVALVAFNS 74 (185)
Q Consensus 2 r~vvae~lg~l~~~~~~~~l~~L~~~l-~~~~~~~r~~~~-~~d~~-----L~~~i~~fl~~l~d~d~~vR~~al~~ln~ 74 (185)
|..++..||...+.++ +..|++.+.+ ++.++.+|-.+. .+=.+ ....|.-+-.+.+|+|..||+.|+.++.-
T Consensus 595 RraAViaLGlI~~g~~-e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 595 RRAAVIALGFVLLRDY-TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSM 673 (963)
T ss_dssp HHHHHHHHHHHTSSSC-SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 6677778888777775 6788888865 467888882211 11000 01123333367889999999999999987
Q ss_pred hhhcCchhhHHhHHhHHHHHHHHhhcCCCC
Q psy18155 75 AAHNKPSLVIDLLDSVLPQLYAETAVKPQS 104 (185)
Q Consensus 75 ~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~ 104 (185)
..-.......+.+.+++-.|.+-..++.+.
T Consensus 674 Ig~gtnna~~~rva~~l~~L~~~~~dk~~d 703 (963)
T 4ady_A 674 ILIQQTEKLNPQVADINKNFLSVITNKHQE 703 (963)
T ss_dssp HSTTCCTTTCTTHHHHHHHHHHHHHCSSSC
T ss_pred HhcCCccccchHHHHHHHHHHHHHhccccc
Confidence 776666666667777777777777765544
No 101
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=81.37 E-value=3.3 Score=38.96 Aligned_cols=30 Identities=10% Similarity=0.086 Sum_probs=19.1
Q ss_pred HHhhHHHHHHhccCCChHHHHHHHHHHHHh
Q psy18155 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSA 75 (185)
Q Consensus 46 L~~~i~~fl~~l~d~d~~vR~~al~~ln~~ 75 (185)
++.+++.++..++|+|-+||.+|-.++..+
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPI 326 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHF 326 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhh
Confidence 455566666666777777777766666544
No 102
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=77.19 E-value=0.95 Score=37.03 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=58.7
Q ss_pred HHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcC
Q psy18155 22 PRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVK 101 (185)
Q Consensus 22 ~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~ 101 (185)
+.|..+++++++.+|..+.. . +. ...+..+++|++..||..+...+ .+ +.+...++|.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~--~-l~--~~~L~~L~~D~d~~VR~~aA~~l------~~-----------~~l~~l~~D~ 158 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVAD--R-LP--LEQLEQMAADRDYLVRAYVVQRI------PP-----------GRLFRFMRDE 158 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHH--H-SC--TGGGGGGTTCSSHHHHHHHHHHS------CG-----------GGGGGTTTCS
T ss_pred HHHHHHHcCCCHHHHHHHHH--h-CC--HHHHHHHHcCCCHHHHHHHHHhc------CH-----------HHHHHHHcCC
Confidence 34667788999999955442 1 10 11233778999999999986521 11 1333457788
Q ss_pred CCCCchHHHhhHH--HHHHhccCCCHHHHHHHHHH
Q psy18155 102 PQSIDPLLRQTIG--DFLSALKDSDLNVRRVALVA 134 (185)
Q Consensus 102 ~~~vr~~L~~~m~--~~l~~l~D~d~~Vr~~A~~~ 134 (185)
+..||......++ -+...++|++.+||+++...
T Consensus 159 d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 159 DRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp CHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHh
Confidence 8888865433332 23356789999999999865
No 103
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=75.07 E-value=12 Score=30.06 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=44.9
Q ss_pred hHHHHHHhccCCCh--HHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHh--hHHHHHHhccCCC
Q psy18155 49 TIGDFLSALKDSDL--NVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQ--TIGDFLSALKDSD 124 (185)
Q Consensus 49 ~i~~fl~~l~d~d~--~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~--~m~~~l~~l~D~d 124 (185)
-||.++++++++|. .++..|..++.....+.+. .+..+.. -+.+++..++.++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~-----------------------~r~~I~~~G~Ip~LV~lL~s~~ 65 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSE-----------------------ARKRVNQLRGILKLLQLLKVQN 65 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHH-----------------------HHHHHHHTTHHHHHHHGGGCCC
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcH-----------------------HHHHHHHcCCHHHHHHHHcCCC
Confidence 37888899999988 8888887777543322221 1111111 2456677777778
Q ss_pred HHHHHHHHHHHHHHhh
Q psy18155 125 LNVRRVALVAFNSAAH 140 (185)
Q Consensus 125 ~~Vr~~A~~~L~~~a~ 140 (185)
.+++..|+.+|...+.
T Consensus 66 ~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 66 EDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888877777665
No 104
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=73.85 E-value=15 Score=30.48 Aligned_cols=112 Identities=18% Similarity=0.236 Sum_probs=67.1
Q ss_pred HHHHhhcccCCc------cchHHHHHHhhcCCCccccc-chhhhhHH----HHhhHHHHH-HhccCCChHHHHHHHHHHH
Q psy18155 6 AECLGKLTLIDP------SNLLPRLQESLKSNSALMRT-TPQSIDPL----LRQTIGDFL-SALKDSDLNVRRVALVAFN 73 (185)
Q Consensus 6 ae~lg~l~~~~~------~~~l~~L~~~l~~~~~~~r~-~~~~~d~~----L~~~i~~fl-~~l~d~d~~vR~~al~~ln 73 (185)
..|++.+--..| ..+...|+...+++++-.+- ++..+... +.+-+-.++ +.+.+.|+.++.+|+..+.
T Consensus 96 ~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~ 175 (265)
T 3b2a_A 96 LRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFL 175 (265)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 456666544333 35667777777777665551 11111111 112233333 7789999999999999886
Q ss_pred HhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHHHHHHHHHhhc
Q psy18155 74 SAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHN 141 (185)
Q Consensus 74 ~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~ 141 (185)
..++ -+.+++.+.+++ ..+.+|+ +.+|..++.-|+..+-..++.
T Consensus 176 eia~--------------------~S~D~~i~~~I~-~eI~elL---~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 176 NMLN--------------------SSADSGHLTLIL-DEIPSLL---QNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHGG--------------------GCSSCCCGGGTT-TTHHHHH---TCSCHHHHHHHHHHHHHHTTS
T ss_pred Hhhc--------------------ccCCHHHHHHHH-HHHHHHH---cCCCHHHHHHHHHHHHHHHcC
Confidence 5543 334444444332 2355555 345899999999888887654
No 105
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=66.45 E-value=7.4 Score=37.13 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=16.5
Q ss_pred HHHHhccC--CCHHHHHHHHHHHHHHhh
Q psy18155 115 DFLSALKD--SDLNVRRVALVAFNSAAH 140 (185)
Q Consensus 115 ~~l~~l~D--~d~~Vr~~A~~~L~~~a~ 140 (185)
.++..+++ ++.++|.-+...+...+.
T Consensus 701 ~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 701 NAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 44444445 688887777766666654
No 106
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=65.78 E-value=5.9 Score=37.27 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=37.4
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCC
Q psy18155 48 QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQ 103 (185)
Q Consensus 48 ~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~ 103 (185)
.++|.+.-+++|+-..||++++.|+..+. ...++..+|+..-.++.
T Consensus 375 ~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~n 420 (800)
T 3oc3_A 375 ERLKDIFPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEK 420 (800)
T ss_dssp GGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCc
Confidence 46777888999999999999999998876 45688888887766543
No 107
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=65.40 E-value=16 Score=34.81 Aligned_cols=87 Identities=14% Similarity=0.236 Sum_probs=54.2
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHH
Q psy18155 48 QTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNV 127 (185)
Q Consensus 48 ~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~V 127 (185)
..+|.+..++.+++..|||.|..++...+.+.-...... |. .+ ...=...+..++..++.+|.++
T Consensus 606 ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~--------~~-----~~--~~~~~~rL~lLV~Ll~s~D~~~ 670 (778)
T 3opb_A 606 VYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKF--------FN-----LE--NPQSLRNFNILVKLLQLSDVES 670 (778)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGT--------SC-----CS--SHHHHHHHHHHHHGGGCSCHHH
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHH--------Hh-----hc--CchhhccHHHHHHHHcCCCHHH
Confidence 478888999999999999999999864432111100000 00 00 0000012667777777799999
Q ss_pred HHHHHHHHHHHhhcChhhHHHh
Q psy18155 128 RRVALVAFNSAAHNKPSLVIDL 149 (185)
Q Consensus 128 r~~A~~~L~~~a~~~p~lv~~~ 149 (185)
|++|..+|..++...|......
T Consensus 671 r~AAagALAnLts~~~~ia~~l 692 (778)
T 3opb_A 671 QRAVAAIFANIATTIPLIAKEL 692 (778)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHH
Confidence 9999988888755555543333
No 108
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=63.80 E-value=31 Score=25.38 Aligned_cols=62 Identities=16% Similarity=0.077 Sum_probs=41.6
Q ss_pred cccCCccchHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHH
Q psy18155 12 LTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVID 85 (185)
Q Consensus 12 l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~ 85 (185)
+.-.+|. ++..+.+++.+.....+++++.+- .-+++.++++--.||..+.+.+.|--.-+..
T Consensus 18 l~~~dw~-~ileicD~I~~~~~~~k~a~rai~-----------Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~ 79 (140)
T 3ldz_A 18 NTAEDWG-LILDICDKVGQSRTGPKDCLRSIM-----------RRVNHKDPHVAMQALTLLGACVSNCGKIFHL 79 (140)
T ss_dssp SSSCCHH-HHHHHHHHHTTSTTHHHHHHHHHH-----------HHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCcCHH-HHHHHHHHHHCCCcCHHHHHHHHH-----------HHHcCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3456776 445677777766555566655221 3567889999999999898887775544443
No 109
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=59.07 E-value=6.1 Score=37.22 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=44.2
Q ss_pred hcccCCccchHHHHHHhhcCCCcc-cc--------cchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCch
Q psy18155 11 KLTLIDPSNLLPRLQESLKSNSAL-MR--------TTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS 81 (185)
Q Consensus 11 ~l~~~~~~~~l~~L~~~l~~~~~~-~r--------~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ 81 (185)
|..+.+-|+.||.+.+..+=.++. ++ |++...+..|.-+=|. =+|+.||+.|+.++..+ .+.
T Consensus 69 R~~l~~~~~aL~kfL~sv~W~~~~e~~~a~~lL~~W~~~~~~dALeLL~~~------f~~~~VR~yAV~~L~~~---~de 139 (696)
T 2x6h_A 69 RFYLSSHKKALTKFLKCINWKLEDEVTQALWMLANWAPMDVEDALELLSPT------FTHPQVRKYAVSRLAQA---PDE 139 (696)
T ss_dssp HTTCCCCHHHHHHHGGGTTTSCHHHHHHHHHHHHHSCCCCHHHHHHHHSTT------CCCHHHHHHHHHHHHHS---CHH
T ss_pred HHHHhhChhHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHhccc------CCCHHHHHHHHHHHHhC---ChH
Confidence 344455678888887776533332 21 6555555544222111 15889999999999876 444
Q ss_pred hhHHhHHhHHHHH
Q psy18155 82 LVIDLLDSVLPQL 94 (185)
Q Consensus 82 ll~~~l~~~Lp~L 94 (185)
-+..+|-++.++|
T Consensus 140 ~L~~YLlQLVQAL 152 (696)
T 2x6h_A 140 DLLLYLLQLVQAL 152 (696)
T ss_dssp HHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 110
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=58.22 E-value=24 Score=34.36 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=40.3
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhh--------HHhHHhHHHHHHHHhh
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLV--------IDLLDSVLPQLYAETA 99 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll--------~~~l~~~Lp~L~~~t~ 99 (185)
+|.+++..++..+.++++.|...|-.++......-...+ .++++.++..+.+-+.
T Consensus 537 ~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~ 599 (1023)
T 4hat_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA 599 (1023)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH
Confidence 488889999999999999999999988887765422222 3467777766655554
No 111
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=58.16 E-value=78 Score=27.48 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=33.4
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHH
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD 88 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~ 88 (185)
.|..+++.++++..|++..||+.....+.-+...+++++...++
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~ 103 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIA 103 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888889999999999999988887666666665444443
No 112
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=57.33 E-value=43 Score=25.30 Aligned_cols=44 Identities=14% Similarity=0.010 Sum_probs=29.3
Q ss_pred HhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHh--HHHHHHHHh
Q psy18155 55 SALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS--VLPQLYAET 98 (185)
Q Consensus 55 ~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~--~Lp~L~~~t 98 (185)
.-|++.++++.-.||..+.+.+.|--.-+...+.+ ||..|.+..
T Consensus 59 krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~ 104 (163)
T 1x5b_A 59 KRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVI 104 (163)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 45678999999999999998888755444433322 544443333
No 113
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=56.02 E-value=81 Score=25.65 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=37.1
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCC
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSI 105 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~v 105 (185)
++..+++.++++..|++..||+.....+--+...|++++...++.+ .....+++..|
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L----~~Ll~d~d~~V 106 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVV----SMLLRDNSAQV 106 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHH----HHHTTCSCHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCCHHH
Confidence 3455566666777889999999988888767677776555554443 33344444444
No 114
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=55.00 E-value=40 Score=31.48 Aligned_cols=123 Identities=15% Similarity=0.219 Sum_probs=66.3
Q ss_pred CccchHHHHHHhhcCCC--cccccchhhhhH--------HHHhhHHHHHHhccC--CChHHHHHHHHHHHHhhhcCchhh
Q psy18155 16 DPSNLLPRLQESLKSNS--ALMRTTPQSIDP--------LLRQTIGDFLSALKD--SDLNVRRVALVAFNSAAHNKPSLV 83 (185)
Q Consensus 16 ~~~~~l~~L~~~l~~~~--~~~r~~~~~~d~--------~L~~~i~~fl~~l~d--~d~~vR~~al~~ln~~~~~kp~ll 83 (185)
...+.++.|.+++++.. .+-|++...+-. +-..-++.++..+++ .|.++=+.+|.|+.......+.-=
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 34577888888886432 233433332222 123337777766654 477778888877743322111000
Q ss_pred HHhHHhHHHHHHHHhhcCCCCC-----chHHHh--hHHHHHHhccCCCHHHHHHHHHHHHHHhhcChhhHHH
Q psy18155 84 IDLLDSVLPQLYAETAVKPQSI-----DPLLRQ--TIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVID 148 (185)
Q Consensus 84 ~~~l~~~Lp~L~~~t~~~~~~v-----r~~L~~--~m~~~l~~l~D~d~~Vr~~A~~~L~~~a~~~p~lv~~ 148 (185)
. +......++.+ +.+++. .+.-++..++.+|..+|..+...|.....++|.-+..
T Consensus 98 ~----------~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~ 159 (651)
T 3grl_A 98 V----------EENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQ 159 (651)
T ss_dssp --------------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred c----------cccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 0 00000000000 001111 2446677888899999999999999999889885543
No 115
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=53.36 E-value=62 Score=24.03 Aligned_cols=76 Identities=11% Similarity=0.053 Sum_probs=49.5
Q ss_pred cccCCccchHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhH--Hh
Q psy18155 12 LTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLL--DS 89 (185)
Q Consensus 12 l~~~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l--~~ 89 (185)
+.-.+|.- +..+.+++.+.+...+++.+.+ ..-+++.|+++--.||..+.+.+.|--.-+...+ ..
T Consensus 14 l~~~dw~~-~leicD~I~~~~~~~k~a~rai-----------~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~ 81 (148)
T 1mhq_A 14 MSEQDWSA-IQNFCEQVNTDPNGPTHAPWLL-----------AHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFR 81 (148)
T ss_dssp CSSCCHHH-HHHHHHHHHHSSHHHHHHHHHH-----------HHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHH
T ss_pred CCCcCHHH-HHHHHHHHHcCCccHHHHHHHH-----------HHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 33467744 4577777766555556555522 2456799999999999999999888555444444 23
Q ss_pred HHHHHHHHhh
Q psy18155 90 VLPQLYAETA 99 (185)
Q Consensus 90 ~Lp~L~~~t~ 99 (185)
||..|.+..+
T Consensus 82 Fl~eL~kl~~ 91 (148)
T 1mhq_A 82 FLNELIKVLS 91 (148)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHc
Confidence 6665555444
No 116
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=48.32 E-value=51 Score=25.73 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=50.8
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHH-hccCCCHHHHH
Q psy18155 51 GDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLS-ALKDSDLNVRR 129 (185)
Q Consensus 51 ~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~-~l~D~d~~Vr~ 129 (185)
+.+...++|++.-+||.|+.+.-.. ... .. .. .+-+++. .++|++.=|++
T Consensus 127 ~~i~~W~~s~~~w~rR~ai~~~l~~----------------------~~~--~~----~~-~~~~i~~~~~~d~~~yV~k 177 (220)
T 2b6c_A 127 TIFALFYGAENFWNRRVALNLQLML----------------------KEK--TN----QD-LLKKAIIYDRTTEEFFIQK 177 (220)
T ss_dssp HHHHHHTTCSSHHHHHHHHHTTTTC----------------------GGG--CC----HH-HHHHHHHHTTTCCCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH----------------------HHC--CC----HH-HHHHHHHHhCCChHHHHHH
Confidence 3455899999999999997644211 000 00 01 1223343 77789999999
Q ss_pred HHHHHHHHHhhcChhhHHHhHh
Q psy18155 130 VALVAFNSAAHNKPSLVIDLLD 151 (185)
Q Consensus 130 ~A~~~L~~~a~~~p~lv~~~L~ 151 (185)
+.-=+|...+-..|+.+.+++.
T Consensus 178 avgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 178 AIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHh
Confidence 9999999999999999998883
No 117
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=47.03 E-value=66 Score=24.00 Aligned_cols=73 Identities=11% Similarity=0.045 Sum_probs=44.3
Q ss_pred CCccchHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHh--HHH
Q psy18155 15 IDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS--VLP 92 (185)
Q Consensus 15 ~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~--~Lp 92 (185)
.+|. ++..+.+.+.+.....++..+. +..-+++.++++--.||..+.+.+.|--.-+...+.+ |+.
T Consensus 27 ~dw~-~ileicD~I~~~~~~pk~a~ra-----------l~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 27 LDWA-SINGFCEQLNEDFEGPPLATRL-----------LAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp CCHH-HHHHHHHHGGGSSSHHHHHHHH-----------HHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH
T ss_pred cCHH-HHHHHHHHHHCCCCcHHHHHHH-----------HHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 3454 3445555555444444444442 2256679999999999999998887776655444422 555
Q ss_pred HHHHHhh
Q psy18155 93 QLYAETA 99 (185)
Q Consensus 93 ~L~~~t~ 99 (185)
.|.+..+
T Consensus 95 eL~kl~~ 101 (149)
T 3g2s_A 95 ELIKVVS 101 (149)
T ss_dssp HHHHHHC
T ss_pred HHHHHHc
Confidence 5554444
No 118
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=45.12 E-value=48 Score=25.25 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=31.6
Q ss_pred HhccCCChHHHHHHHHHHHHhhhcCchhhHHhHH--hHHHHHHHHhh
Q psy18155 55 SALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLD--SVLPQLYAETA 99 (185)
Q Consensus 55 ~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~--~~Lp~L~~~t~ 99 (185)
.-+++.++++...||..+.+.+.|--.-+...+. .||..|.+..+
T Consensus 57 krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~ 103 (171)
T 1juq_A 57 HKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVS 103 (171)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhc
Confidence 5678999999999999999988875544444432 25655555544
No 119
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=43.65 E-value=1.2e+02 Score=23.83 Aligned_cols=73 Identities=7% Similarity=0.028 Sum_probs=51.0
Q ss_pred HHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHHHH
Q psy18155 52 DFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVA 131 (185)
Q Consensus 52 ~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~~A 131 (185)
.+...++|++.-+||.|+.++-.. .... . .......+...++|++.-|+++.
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~l~~----------------------~~~~--d----~~~~~~~i~~~~~d~~~yV~kAv 186 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQLKY----------------------KQKM--D----EELLFWIIGQLHSSKEFFIQKAI 186 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTTTTC----------------------GGGC--C----HHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHH----------------------HhCC--C----HHHHHHHHHHhcCCHHHHHHHHH
Confidence 345888899999999997654211 0000 0 01112223346778999999999
Q ss_pred HHHHHHHhhcChhhHHHhHhh
Q psy18155 132 LVAFNSAAHNKPSLVIDLLDS 152 (185)
Q Consensus 132 ~~~L~~~a~~~p~lv~~~L~~ 152 (185)
-=+|..++-..|+.+.+++.+
T Consensus 187 gW~Lr~~~k~~p~~v~~fl~~ 207 (232)
T 3jxy_A 187 GWVLREYAKTNPDVVWEYVQN 207 (232)
T ss_dssp HHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHH
Confidence 999999999999999999875
No 120
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=40.98 E-value=1.1e+02 Score=22.76 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=28.6
Q ss_pred Hhcc-CCChHHHHHHHHHHHHhhhcCchhhHHhHHh--HHHH-HHHHh
Q psy18155 55 SALK-DSDLNVRRVALVAFNSAAHNKPSLVIDLLDS--VLPQ-LYAET 98 (185)
Q Consensus 55 ~~l~-d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~--~Lp~-L~~~t 98 (185)
.-++ +.++++.-.||..+.+.+.|--.-+...+.+ ||.. |.+..
T Consensus 60 krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~ 107 (157)
T 1elk_A 60 KRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTI 107 (157)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHh
Confidence 4455 5899999999999998887754444443322 5554 44444
No 121
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.47 E-value=1.2e+02 Score=23.53 Aligned_cols=58 Identities=10% Similarity=0.097 Sum_probs=39.9
Q ss_pred CCccchHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhH
Q psy18155 15 IDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVI 84 (185)
Q Consensus 15 ~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~ 84 (185)
.+|.-+ .++-+++.+.+...++.++.+ ..-|++.|+++.-.||..+.+.+.|--.-+.
T Consensus 21 ~dw~~~-leicd~i~~~~~~~k~a~r~l-----------~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~ 78 (220)
T 1dvp_A 21 PDWPSI-LLICDEINQKDVTPKNAFAAI-----------KKKMNSPNPHSSCYSLLVLESIVKNCGAPVH 78 (220)
T ss_dssp CCHHHH-HHHHHHHHTTSSCHHHHHHHH-----------HHHHTCSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cCHHHH-HHHHHhhcCCCcCHHHHHHHH-----------HHHHcCCCHHHHHHHHHHHHHHHhccCHHHH
Confidence 677644 557777766555566655532 2456789999999999999988877544343
No 122
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=37.83 E-value=25 Score=34.31 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=57.5
Q ss_pred HHHhccCCC-hHHHHHHHHHHHHhhhcC-c-hhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHHH
Q psy18155 53 FLSALKDSD-LNVRRVALVAFNSAAHNK-P-SLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRR 129 (185)
Q Consensus 53 fl~~l~d~d-~~vR~~al~~ln~~~~~k-p-~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr~ 129 (185)
.+.++.|+. .+||..|-.||...+|.. + ..+.+.+..|-....+.. .. +.+.. .. +...-.|.
T Consensus 848 v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~-----~~-~~~~~-------~~-~~~~~~rH 913 (997)
T 1vsy_5 848 VVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNK-----YT-SKERQ-------KL-SKTDIKIH 913 (997)
T ss_dssp HTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTS-----SC-HHHHH-------HH-HHHCHHHH
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcc-----cc-ccccc-------cc-chHHHHHH
Confidence 337899999 999999999999999987 7 444433333322211100 01 11110 00 11124667
Q ss_pred HHHHHHHHHhhcChhhH--HHhHhhHhhhh
Q psy18155 130 VALVAFNSAAHNKPSLV--IDLLDSVLPQL 157 (185)
Q Consensus 130 ~A~~~L~~~a~~~p~lv--~~~L~~llp~L 157 (185)
+|.+.|.+..+.-|.-+ =+.+|+++..|
T Consensus 914 ~aVLgL~AlV~a~Py~vP~P~w~P~~l~~L 943 (997)
T 1vsy_5 914 GNVLGLGAIISAFPYVFPLPPWIPKNLSNL 943 (997)
T ss_dssp HHHHHHHHHHTTCSCCSSCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCCcccHHHHHHH
Confidence 77899999999999965 46778877777
No 123
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=35.41 E-value=1.4e+02 Score=23.44 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=39.7
Q ss_pred ccCCccchHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchhhHHh
Q psy18155 13 TLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDL 86 (185)
Q Consensus 13 ~~~~~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~ 86 (185)
.-.+|. ++.++-+++.+.+...++..+.+ ..-|++.|+++...||..+.+.+.|--.-+...
T Consensus 22 ~~~dw~-~ileicD~I~~~~~~~k~a~ral-----------~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~e 83 (226)
T 3zyq_A 22 LETDWE-SILQICDLIRQGDTQAKYAVNSI-----------KKKVNDKNPHVALYALEVMESVVKNCGQTVHDE 83 (226)
T ss_dssp SSCCHH-HHHHHHHHHHTTSSCHHHHHHHH-----------HHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCcCHH-HHHHHHHHHhCCCccHHHHHHHH-----------HHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 345665 33456666665544555555522 245679999999999999988877655544333
No 124
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=32.91 E-value=68 Score=24.10 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHhHhhHhhhhhhhhhhcchhh
Q psy18155 125 LNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKKTLI 168 (185)
Q Consensus 125 ~~Vr~~A~~~L~~~a~~~p~lv~~~L~~llp~Ly~et~vk~el~ 168 (185)
.+--+.++.++-..+...+. ..+.+..++-.||+.+-+..|-+
T Consensus 95 ~~~q~~lL~alq~~~~~~~~-~~~~~~~il~~LYd~DvleEe~i 137 (168)
T 3d3m_A 95 VDLQVSALYALQVHCYNSNF-PKGMLLRFFVHFYDMEIIEEEAF 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CTTHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHhhcchhhHHHH
Confidence 33445555555554444555 44778899999999988866654
No 125
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=32.40 E-value=1.4e+02 Score=29.00 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHhhcccCC---ccchHHHHHHhhcCCCcccccchhhhhHHHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCch
Q psy18155 5 VAECLGKLTLID---PSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPS 81 (185)
Q Consensus 5 vae~lg~l~~~~---~~~~l~~L~~~l~~~~~~~r~~~~~~d~~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~ 81 (185)
.++.+++.|... ++++++.+.+.+. .+++..|.+-+.++|.+|--+.| |.
T Consensus 419 ~gslV~k~c~~~~~c~~~~v~~i~~~l~-------------------------~~~~~~~~~~~~~~LkaLGN~g~--p~ 471 (1056)
T 1lsh_A 419 YGSLVFRYCANTVSCPDELLQPLHDLLS-------------------------QSSDRAKEEEIVLALKALGNAGQ--PN 471 (1056)
T ss_dssp HHHHHHHHHTTCSSCCGGGTHHHHHHHH-------------------------HHHHTTCHHHHHHHHHHHHHHTC--GG
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHH-------------------------HHHhcCChHHHHHHHHHhhccCC--hh
Q ss_pred hhHHhHHhHHH----------------HHHHHhhcCCCC---CchHHHhhHHHHHHhccCCCHHHHHHHHHHHHH
Q psy18155 82 LVIDLLDSVLP----------------QLYAETAVKPQS---IDPLLRQTIGDFLSALKDSDLNVRRVALVAFNS 137 (185)
Q Consensus 82 ll~~~l~~~Lp----------------~L~~~t~~~~~~---vr~~L~~~m~~~l~~l~D~d~~Vr~~A~~~L~~ 137 (185)
.+. .|..++| +++..-...... ++.+|.+ +..-..++.+||.+||.+|..
T Consensus 472 ~l~-~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~-----i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 472 SIK-KIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLP-----IFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp GHH-HHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHH-----HHHCTTSCHHHHHHHHHHHHH
T ss_pred HHH-HHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHH-----HhcCCCCChHHHHHHHHHHHH
No 126
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=30.27 E-value=1.5e+02 Score=29.13 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=31.9
Q ss_pred HHHhhHHHHHHhccCCChHHHHHHHHHHHHhhhcCchh
Q psy18155 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSL 82 (185)
Q Consensus 45 ~L~~~i~~fl~~l~d~d~~vR~~al~~ln~~~~~kp~l 82 (185)
+|.+++..++..+.+++..|..+|-.||..+...-...
T Consensus 563 ~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 563 FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999998876544443
No 127
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=29.70 E-value=2e+02 Score=22.52 Aligned_cols=75 Identities=7% Similarity=0.005 Sum_probs=50.1
Q ss_pred HHHhccCCChHHHHHHHHHH----HHhhhcCchhhHHhHHhHHHHHHHHhhcCCCCCchHHHhhHHHHHHhccCCCHHHH
Q psy18155 53 FLSALKDSDLNVRRVALVAF----NSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVR 128 (185)
Q Consensus 53 fl~~l~d~d~~vR~~al~~l----n~~~~~kp~ll~~~l~~~Lp~L~~~t~~~~~~vr~~L~~~m~~~l~~l~D~d~~Vr 128 (185)
+...+.|++.=+||.|+.+. .. .+.|. .-.+.+...+......++|++.-|+
T Consensus 113 ~~~W~~s~~~w~rR~ai~~q~~ll~~-~~~k~-----------------------~~~~~~~~~l~~i~~~l~~~~~~v~ 168 (235)
T 1t06_A 113 ADKWIASGDELKMSAGWSCYCWLLGN-RKDNA-----------------------FSESKISDMLEMVKDTIHHSPERTK 168 (235)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHH-SCGGG-----------------------SCHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHhh-ccccC-----------------------cChhhHHHHHHHHHHHccCChHHHH
Confidence 33889999999999998843 32 11110 0011222233444457778899999
Q ss_pred HHHHHHHHHHhhcChhhHHHhHh
Q psy18155 129 RVALVAFNSAAHNKPSLVIDLLD 151 (185)
Q Consensus 129 ~~A~~~L~~~a~~~p~lv~~~L~ 151 (185)
++.--+|.+..-..|..+...+.
T Consensus 169 kAi~W~Lr~~gk~~~~~~~~al~ 191 (235)
T 1t06_A 169 SAMNNFLNTVAISYVPLHEKAVE 191 (235)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999888888888877765
No 128
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=27.80 E-value=62 Score=32.06 Aligned_cols=54 Identities=24% Similarity=0.214 Sum_probs=30.6
Q ss_pred cCCccchHHHHHHhhcCCCccc---------ccchhhhhHHHHhhHHHHHHhccC--CChHHHHHHHHHH-HHh
Q psy18155 14 LIDPSNLLPRLQESLKSNSALM---------RTTPQSIDPLLRQTIGDFLSALKD--SDLNVRRVALVAF-NSA 75 (185)
Q Consensus 14 ~~~~~~~l~~L~~~l~~~~~~~---------r~~~~~~d~~L~~~i~~fl~~l~d--~d~~vR~~al~~l-n~~ 75 (185)
+.+-|+.||.+.....-.++.. +|++...+..| +++.. +|+.||+.|+.++ .++
T Consensus 581 l~~~p~aL~k~L~sV~W~~~~e~~e~~~LL~~W~~i~~~~AL--------eLL~~~f~d~~VR~yAV~~L~~~~ 646 (1091)
T 3hhm_A 581 CVTIPEILPKLLLSVKWNSRDEVAQMYCLVKDWPPIKPEQAM--------ELLDCNYPDPMVRGFAVRCLEKYL 646 (1091)
T ss_dssp HTTSGGGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHH--------HTTSTTCCCHHHHHHHHHHHHHHC
T ss_pred hccChhHHHHHheeCCCCCHHHHHHHHHHHhcCCCCCHHHHH--------HhCcccCCCHHHHHHHHHHHHhhC
Confidence 3445667777766554333211 14433333333 44442 4889999999999 654
No 129
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=27.59 E-value=49 Score=30.66 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHH
Q psy18155 60 SDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 94 (185)
Q Consensus 60 ~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L 94 (185)
+|+.||+.|+.++..+- ..=+..+|-++.++|
T Consensus 107 ~d~~VR~yAV~~L~~~~---D~eL~lYLlQLVQAL 138 (614)
T 3ls8_A 107 TNPTVRRYAVARLRQAD---DEDLLMYLLQLVQAL 138 (614)
T ss_dssp CCHHHHHHHHHHHTTSC---HHHHHHTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHhCC---hHHHHHHHHHHHHhh
Confidence 57899999999997542 223445555555544
No 130
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=25.75 E-value=79 Score=31.31 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHHhhhcCchhhHHhHHhHHHHH
Q psy18155 60 SDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 94 (185)
Q Consensus 60 ~d~~vR~~al~~ln~~~~~kp~ll~~~l~~~Lp~L 94 (185)
+|..||+.|+.++..+ .+.-+...|.++.++|
T Consensus 637 ~d~~VR~yAV~~L~~~---~d~~l~~yLpQLVQaL 668 (1092)
T 2y3a_A 637 PDQYVREYAVGCLRQM---SDEELSQYLLQLVQVL 668 (1092)
T ss_dssp CCTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Confidence 4788999999999853 3344555555555554
No 131
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=24.15 E-value=77 Score=30.79 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.5
Q ss_pred CChHHHHHHHHHHHHh
Q psy18155 60 SDLNVRRVALVAFNSA 75 (185)
Q Consensus 60 ~d~~vR~~al~~ln~~ 75 (185)
+|..||+.|+.++..+
T Consensus 484 ~d~~Vr~yAv~~L~~~ 499 (940)
T 2wxf_A 484 PDCYVGSFAIKSLRKL 499 (940)
T ss_dssp CCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4889999999999753
No 132
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=23.53 E-value=3.5e+02 Score=26.21 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=26.5
Q ss_pred HHHHHHhccCCC-HHHHHHHHHHHHHHhhcC-h
Q psy18155 113 IGDFLSALKDSD-LNVRRVALVAFNSAAHNK-P 143 (185)
Q Consensus 113 m~~~l~~l~D~d-~~Vr~~A~~~L~~~a~~~-p 143 (185)
+.-++..+.|+. .|||..|..+|+...|.. +
T Consensus 845 ~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~ 877 (997)
T 1vsy_5 845 LEFVVSNLYNEQFVEVRVRAASILSDIVHNWKE 877 (997)
T ss_dssp HHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc
Confidence 344566799999 999999999999998887 6
No 133
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=23.20 E-value=2.5e+02 Score=21.35 Aligned_cols=43 Identities=14% Similarity=0.009 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhh--cChhhHHHhHhhHhhhhhhhhhhcchhh
Q psy18155 125 LNVRRVALVAFNSAAH--NKPSLVIDLLDSVLPQLYAETAVKKTLI 168 (185)
Q Consensus 125 ~~Vr~~A~~~L~~~a~--~~p~lv~~~L~~llp~Ly~et~vk~el~ 168 (185)
..--+.++.++-..+. ..|. +.+.+..++-.||+.+-+..|.+
T Consensus 106 ~~~q~~lL~ale~~~~~~~~~~-~~~~~~~il~~LYd~DileEe~i 150 (189)
T 1paq_A 106 EEEYIDLMNIIMEKIVEQSFDK-PDLILFSALVSLYDNDIIEEDVI 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTSSCHHHH
T ss_pred cHHHHHHHHHHHHHHHhccChh-HHHHHHHHHHHhccccccccHHH
Confidence 3334555566666555 6677 55788999999999888766554
No 134
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=20.05 E-value=1.7e+02 Score=24.76 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=35.2
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCchhhHHhHHh---HHHHHHHHhhc
Q psy18155 56 ALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDS---VLPQLYAETAV 100 (185)
Q Consensus 56 ~l~d~d~~vR~~al~~ln~~~~~kp~ll~~~l~~---~Lp~L~~~t~~ 100 (185)
+....+..+|..|-.++.++.+|.|..+....+. |+..+|.+...
T Consensus 78 ~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~ 125 (315)
T 3qml_C 78 LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSN 125 (315)
T ss_dssp HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHH
Confidence 3345677899999999999999999988766543 77777766544
Done!