RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18155
(185 letters)
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 122 bits (305), Expect = 5e-33
Identities = 83/208 (39%), Positives = 108/208 (51%), Gaps = 24/208 (11%)
Query: 2 RNVVAECLGKLTLIDPSNLLPRLQESLKSNS------------ALMRTTPQSIDPLLRQT 49
++ + LG +++ + LP + + + S + + + P +
Sbjct: 870 KSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENI 929
Query: 50 IGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLL------DSVLPQLYAETAVK-- 101
L + ++ R V P ++ L S + TAVK
Sbjct: 930 WALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFT 989
Query: 102 ----PQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157
PQ IDPLL+ IGDFL L+D DLNVRRVALV FNSAAHNKPSL+ DLLD+VLP L
Sbjct: 990 ISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049
Query: 158 YAETAVKKTLIREVEMGPFKHTVDDGLD 185
Y ET V+K LIREVEMGPFKHTVDDGLD
Sbjct: 1050 YNETKVRKELIREVEMGPFKHTVDDGLD 1077
Score = 31.3 bits (69), Expect = 0.081
Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 26/176 (14%)
Query: 5 VAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNV 64
++ L K+T D R + + L + + + D R+ + L L+D + V
Sbjct: 5 ISNLLEKMTSSDKDF---RFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEV 61
Query: 65 RRVALVAFNS-AAHNKPSLVIDLLDSVLPQL---------------------YAETAVKP 102
+ +A+ + K V ++D++ + +
Sbjct: 62 QNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGS 121
Query: 103 QSIDPLLRQTIGDFLSAL-KDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157
+ ++ G SA+ K D++V+ AL + L+++ S+L L
Sbjct: 122 ALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCL 177
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 35.5 bits (80), Expect = 0.003
Identities = 21/153 (13%), Positives = 40/153 (26%), Gaps = 39/153 (25%)
Query: 2 RNVVAECLGKLTLIDP-----SNLLPRLQESLKSNSALMRTT----------PQSIDPLL 46
R L KL + ++P++ + L R T D
Sbjct: 458 REAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT 517
Query: 47 RQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSID 106
+ + L D NVR + + + +
Sbjct: 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGP-----------------ILDNSTLQSEVK 560
Query: 107 PLLRQTIGDFLSALKDSDLNVRRVALVAFNSAA 139
P+L + +D D++V+ A A +
Sbjct: 561 PILEK-------LTQDQDVDVKYFAQEALTVLS 586
Score = 26.3 bits (56), Expect = 2.4
Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 23/127 (18%)
Query: 50 IGDFLSALKDSDLNVRRVALVAFNSAAHN------KPSLV------IDLLDSVLPQL--- 94
I + L++ D+ +R ++ ++ A + L+ I D VL L
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQ 71
Query: 95 ---YAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNS-AAHNKPSLVIDLL 150
+ P+ + LL S + VR A+ + + + + PS +
Sbjct: 72 LGTFTTLVGGPEYVHCLLPP----LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127
Query: 151 DSVLPQL 157
++ +L
Sbjct: 128 VPLVKRL 134
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 33.6 bits (75), Expect = 0.011
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 23/115 (20%)
Query: 43 DPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKP 102
D ++ + +K+ D R A++AF +P
Sbjct: 360 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG---------------------PEP 398
Query: 103 QSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157
+ PL+ Q + + +KD + VR A P I+ D L L
Sbjct: 399 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN--DVYLAPL 451
Score = 29.4 bits (64), Expect = 0.23
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 15/87 (17%)
Query: 21 LPRLQESLKSNSALMR-------------TTPQSIDPLLRQTIGDFLSALKDSDLNVRRV 67
LP ++E +K+ R P + PL+ Q + + +KD + VR
Sbjct: 367 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT 426
Query: 68 ALVAFNSAAHNKPSLVIDLLDSVLPQL 94
A P I+ D L L
Sbjct: 427 AAWTVGRICELLPEAAIN--DVYLAPL 451
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 30.2 bits (66), Expect = 0.12
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 22/114 (19%)
Query: 45 LLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQS 104
L + I + L D D V A V + + + S PQ
Sbjct: 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-------------HAIMRSPQM 60
Query: 105 IDPLLRQTIGDFLSALKDS-DLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQL 157
+ ++R ++++ D+ R ++ +H++ L+ +P L
Sbjct: 61 VSAIVR--------TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPAL 106
>d1s2xa_ a.47.3.1 (A:) Cag-Z {Helicobacter pylori [TaxId: 210]}
Length = 180
Score = 28.1 bits (62), Expect = 0.46
Identities = 31/144 (21%), Positives = 69/144 (47%), Gaps = 29/144 (20%)
Query: 25 QESLKSNSALMRTTPQSIDPLLRQTIG---------DFLSALKDSDLNVRRVALVAFNSA 75
Q+ L SNS+LMR + D ++ DFL +++ +N+++ ++F++
Sbjct: 12 QKILDSNSSLMRNANEVRDKFIQNYATSLKDSNDPQDFLRRVQELRINMQK-NFISFDAY 70
Query: 76 AHNKPSLVIDLLDSVLPQ-LYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVA 134
+ +LV+ + + +AE+ +K + T+G+F++ + D+
Sbjct: 71 YNYLNNLVLASYNRCKQEKTFAESTIKNE-------LTLGEFVAEISDN----------- 112
Query: 135 FNSAAHNKPSLVIDLLDSVLPQLY 158
FN+ ++ + + DL+ S LP+ Y
Sbjct: 113 FNNFTCDEVARISDLVASYLPREY 136
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 28.2 bits (62), Expect = 0.59
Identities = 25/148 (16%), Positives = 42/148 (28%), Gaps = 16/148 (10%)
Query: 19 NLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHN 78
+ L R+ S S T P L + L + R L N
Sbjct: 223 SRLSRIVTSA-STDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILN 281
Query: 79 KPSLVIDLLDSVLPQL----------YAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVR 128
K + S Q + S LL + L+ + N+R
Sbjct: 282 K---AQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLR 338
Query: 129 RVALVAFNSAA--HNKPSLVIDLLDSVL 154
+AL + + A V +++V+
Sbjct: 339 YLALESMCTLASSEFSHEAVKTHIETVI 366
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 27.9 bits (60), Expect = 0.61
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 19/117 (16%)
Query: 54 LSALKDSDLNVRRVALVAFNSAAHNK-PSLVIDLLDS-----------VLPQLYAETAVK 101
L D + R + L I+ +L Q+ +
Sbjct: 25 FRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 84
Query: 102 PQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLPQLY 158
+ L AL D VR A+ + P +++ +
Sbjct: 85 DNVFNILNNM-------ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF 134
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54)
N-terminal domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 239
Score = 27.3 bits (60), Expect = 1.1
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 78 NKPSLVIDLLD--SVLPQLYAETAVKPQSIDPLLRQTIGDFLSALKDSDLNVR 128
N S+ +D LD P L KP + +Q I + K+ DLN+R
Sbjct: 32 NVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRLRKNVDLNIR 84
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 26.0 bits (56), Expect = 1.5
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 11/106 (10%)
Query: 33 ALMRTTPQSIDPLLRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLP 92
AL R ++ +PLL +L + D +R A A+ V L+ +
Sbjct: 15 ALSRMGDEAFEPLLE--------SLSNEDWRIRGAA--AWIIGNFQDERAVEPLIKLLED 64
Query: 93 QLYAETAVKPQSIDPLLRQTIGDFL-SALKDSDLNVRRVALVAFNS 137
+ +S++ + + + + + R+VA+ +
Sbjct: 65 DSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYLET 110
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 26.4 bits (57), Expect = 2.0
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
Query: 109 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLP-QLYAETAVK-KT 166
L Q + + L+ R+ ++ P LV+D Q A
Sbjct: 12 LAQALARREAVLRQDPEGGYRL----VHAEGDLLPGLVVDYYAGHAVVQATAHAWEGLLP 67
Query: 167 LIREVEMGPFKHTV 180
+ E + +
Sbjct: 68 QVAEALRPHVQSVL 81
Score = 26.4 bits (57), Expect = 2.0
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 46 LRQTIGDFLSALKDSDLNVRRVALVAFNSAAHNKPSLVIDLLDSVLP-QLYAE 97
L Q + + L+ R+ ++ P LV+D Q A
Sbjct: 12 LAQALARREAVLRQDPEGGYRL----VHAEGDLLPGLVVDYYAGHAVVQATAH 60
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 25.8 bits (55), Expect = 3.8
Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 24/113 (21%)
Query: 5 VAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTPQSIDPLLRQTIGDFLSALKD-SDLN 63
A +G+L + P + P LQ Q I + ++L++ D
Sbjct: 769 TAITIGRLGYVCPQEVAPMLQ----------------------QFIRPWCTSLRNIRDNE 806
Query: 64 VRRVALVAFNSAAHNKPSLVIDLLDSVLPQLYAETAVKPQSIDPLLRQTIGDF 116
+ A + PS VI A + + + + F
Sbjct: 807 EKDSAFRGICTMISVNPSGVIQDFIFFC-DAVASWINPKDDLRDMFCKILHGF 858
>d1ulib_ d.17.4.4 (B:) Biphenyl dioxygenase small subunit BphA2
{Rhodococcus sp. (strain RHA1) [TaxId: 101510]}
Length = 177
Score = 24.0 bits (51), Expect = 9.9
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 36 RTTPQSIDPLLRQTIGDFL 54
RT P +DP L+ I F
Sbjct: 2 RTKPAPVDPSLQHEIEQFY 20
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.366
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 596,328
Number of extensions: 24831
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 25
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)