BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18158
(654 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/571 (58%), Positives = 415/571 (72%), Gaps = 31/571 (5%)
Query: 29 YGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEV 88
YG+T+ ++L+ P ++D T++L + +KP+ V E +EEL+ R+ VL KLNNLVKEWI +V
Sbjct: 19 YGITSPISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNLVKEWISDV 78
Query: 89 SIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKT 148
S +KN+PP+V VGGKI+TFGSYRLGVH KGADIDALCVAPRHV+R+D+F SFFEKLK
Sbjct: 79 SESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERSDFFQSFFEKLKH 138
Query: 149 VDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVR 208
D + +LRAVE+AFVPVIK FDGIEID++FARLA++ I D++DLRDD L++LD +C+R
Sbjct: 139 QDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIR 198
Query: 209 SLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQL 268
SLNGCRVTDEIL LVPN E FRL LR +KLWAK+ GIYSN+LG+LGGVSWAMLVAR CQL
Sbjct: 199 SLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQL 258
Query: 269 YPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPA 328
YPNAAASTLV KFFLVFS+W+WP PVLLK+P+ NL PVWDPRVN +DRYHLMPIITPA
Sbjct: 259 YPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPA 318
Query: 329 YPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIA 388
YPQQNST+NVS STRT+M EEFKQG ++++I GK+ W KL E PNFF KYRHY+VL A
Sbjct: 319 YPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTA 378
Query: 389 SSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEITA 448
S+ + E+ LEW GL+ESK+R L+GNLERN I LAHVNP+ +
Sbjct: 379 SASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG---------------- 422
Query: 449 EGKEEGGENTSPPVSGVASMWFIGLDFI----AANVILNLTYDIQHFTNAVHWQATQSKM 504
KE +N SMWF+G+ F A +V ++LTYDIQ FT+ V+ QA M
Sbjct: 423 -NKEHHKDN------NYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINM 475
Query: 505 MKDGMKIEVRHVKKKQLSEYLPAHMLKKDKKTKSGDQNTSAKKRKSDQALDELGDKSRPR 564
+K+GMKIE HVKKKQL YLPA +L+K KK D N S+ +S + + R
Sbjct: 476 LKEGMKIEATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSR 535
Query: 565 LDSDSNSLSDKVNNISNNGDQSSSECTEDNS 595
D+D+ + N+ ++ D S TE NS
Sbjct: 536 -DTDNGT---PFNSPASKSDSPSVGETERNS 562
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/548 (59%), Positives = 406/548 (74%), Gaps = 31/548 (5%)
Query: 29 YGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEV 88
YG+T+ ++L+ P ++D T++L + +KP+ V E +EEL+ R+ VL KLNNLVKEWI ++
Sbjct: 19 YGITSPISLACPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNLVKEWISDI 78
Query: 89 SIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKT 148
S +KN+PP+V VGGKI+TFGSYRLGVH KGADIDALCVAPRHV+R+D+F SFFEKLK
Sbjct: 79 SESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERSDFFQSFFEKLKH 138
Query: 149 VDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVR 208
D + +LRAVE+AFVPVIK FDGIEID++FARLA++ I D++DLRDD L++LD +C+R
Sbjct: 139 QDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIR 198
Query: 209 SLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQL 268
SLNGCRVTDEIL LVPN E FRL LR +KLWAK+ GIYSN+LG+LGGVSWAMLVAR CQL
Sbjct: 199 SLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQL 258
Query: 269 YPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPA 328
YPNAAASTLV KFFLVFS+W+WP PVLLK+P+ NL PVWDPRVN +DRYHLMPIITPA
Sbjct: 259 YPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPA 318
Query: 329 YPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIA 388
YPQQNST+NVS STRT+M EEFKQG ++++I GK+ W KL E PNFF KYRHY+VL A
Sbjct: 319 YPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTA 378
Query: 389 SSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEITA 448
S+ + E+ LEW GL+ESK+R L+GNLERN I LAHVNP+ +
Sbjct: 379 SASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG---------------- 422
Query: 449 EGKEEGGENTSPPVSGVASMWFIGLDFI----AANVILNLTYDIQHFTNAVHWQATQSKM 504
KE N SMWF+G+ F A +V ++LTYDIQ FT+ V+ QA M
Sbjct: 423 -NKEHHKAN------NYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINM 475
Query: 505 MKDGMKIEVRHVKKKQLSEYLPAHMLKKDKKTKSGDQNTSAKKRKSDQALDELG-DKSRP 563
+KDGMKIE HVKKKQL YLPA +L+K KK+ S +S + +LD D SR
Sbjct: 476 LKDGMKIEATHVKKKQLHHYLPAEILQKKKKSLSDVSRSSGGLQSKRSSLDSTCLDSSR- 534
Query: 564 RLDSDSNS 571
D+DS +
Sbjct: 535 --DTDSGT 540
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/551 (59%), Positives = 408/551 (74%), Gaps = 29/551 (5%)
Query: 19 GKPQSQAPVT-YGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKL 77
G Q+Q P YG+T+ ++L+ P + D T++L E LKP+ V E +EEL R+ +L KL
Sbjct: 9 GSQQTQPPQRHYGITSPISLAAPKETDCLLTQKLIETLKPFGVFEEEEELQRRILILGKL 68
Query: 78 NNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRAD 137
NNLVKEWI+E+S +KN+P +V E VGGKI+TFGSYRLGVH KGADIDALCVAPRHVDR+D
Sbjct: 69 NNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSD 128
Query: 138 YFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDM 197
+F+SF++KLK +EV DLRAVEEAFVPVIK+ FDGIEID+LFARLAL+ IP+D+DLRDD
Sbjct: 129 FFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDS 188
Query: 198 LLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVS 257
LLKNLD +C+RSLNGCRVTDEIL LVPNI+NFRL LR IKLWAK+H IYSN+LG+LGGVS
Sbjct: 189 LLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVS 248
Query: 258 WAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVAD 317
WAMLVAR CQLYPNA ASTLV KFFLVFS+W+WP PVLLK+P+ NL PVWDPRVN +D
Sbjct: 249 WAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSD 308
Query: 318 RYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFF 377
RYHLMPIITPAYPQQNST+NVS+STR +M EEFKQG I+++I K W KLFE PNFF
Sbjct: 309 RYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFF 368
Query: 378 TKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVI 437
KY+HY+VL+AS+ + + +LEW GL+ESK+R L+G+LE+N I LAHVNP+ +
Sbjct: 369 QKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFP------ 422
Query: 438 ANGSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFI----AANVILNLTYDIQHFTN 493
SP +MW IGL F + N+ ++LTYDIQ FT+
Sbjct: 423 -----------------APKESPDREEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTD 465
Query: 494 AVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKK-TKSGDQNTSAKKRKSDQ 552
V+ QA SKM + MKI HVK+KQL + LP+H+L+K KK + G + T+ D
Sbjct: 466 TVYRQAINSKMFELDMKIAAMHVKRKQLHQLLPSHVLQKRKKHSTEGVKLTALNDSSLDL 525
Query: 553 ALDELGDKSRP 563
++D S P
Sbjct: 526 SMDSDNSMSVP 536
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/522 (61%), Positives = 401/522 (76%), Gaps = 28/522 (5%)
Query: 19 GKPQSQAPVT-YGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKL 77
G Q+Q P YG+T+ ++L+ P + D T++L E LKP+ V E +EEL R+ +L KL
Sbjct: 9 GSQQTQPPQKHYGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKL 68
Query: 78 NNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRAD 137
NNLVKEWI+E+S +KN+P +V E VGGKI+TFGSYRLGVH KGADIDALCVAPRHVDR+D
Sbjct: 69 NNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSD 128
Query: 138 YFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDM 197
+F+SF++KLK +EV DLRAVEEAFVPVIK+ FDGIEID+LFARLAL+ IP+D+DLRDD
Sbjct: 129 FFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDS 188
Query: 198 LLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVS 257
LLKNLD +C+RSLNGCRVTDEIL LVPNI+NFRL LR IKLWAK+H IYSN+LG+LGGVS
Sbjct: 189 LLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVS 248
Query: 258 WAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVAD 317
WAMLVAR CQLYPNA ASTLV KFFLVFS+W+WP PVLLK+P+ NL PVWDPRVN +D
Sbjct: 249 WAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSD 308
Query: 318 RYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFF 377
RYHLMPIITPAYPQQNST+NVS+STR +M EEFKQG I+++I K W KLFE PNFF
Sbjct: 309 RYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFF 368
Query: 378 TKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVI 437
KY+HY+VL+AS+ + + +LEW GL+ESK+R L+G+LE+N I LAHVNP+ +
Sbjct: 369 QKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFP------ 422
Query: 438 ANGSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFI----AANVILNLTYDIQHFTN 493
+P+ + +E +MW IGL F + N+ ++LTYDIQ FT+
Sbjct: 423 -----APKENPDKEE------------FRTMWVIGLVFKKTENSENLSVDLTYDIQSFTD 465
Query: 494 AVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKK 535
V+ QA SKM + MKI HVK+KQL + LP+H+L+K KK
Sbjct: 466 TVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSHVLQKKKK 507
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/594 (56%), Positives = 428/594 (72%), Gaps = 30/594 (5%)
Query: 19 GKPQSQAPVT-YGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKL 77
G Q+Q P YG+T+ ++L+ P + D T++L E LKP+ V E +EEL R+ +L KL
Sbjct: 9 GSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQRRILILGKL 68
Query: 78 NNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRAD 137
NNLVKEWI+E+S +KN+P +V E VGGKI+TFGSYRLGVH KGADIDALCVAPRHVDR+D
Sbjct: 69 NNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSD 128
Query: 138 YFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDM 197
+F+SF++KLK +EV DLRAVEEAFVPVIK+ FDGIEID+LFARLAL+ IP+D+DLRDD
Sbjct: 129 FFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDS 188
Query: 198 LLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVS 257
LLKNLD +C+RSLNGCRVTDEIL LVPNI+NFRL LR IKLWAK+H IYSN+LG+LGGVS
Sbjct: 189 LLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVS 248
Query: 258 WAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVAD 317
WAMLVAR CQLYPNA ASTLV KFFLVFS+W+WP PVLLK+P+ NL PVWDPRVN +D
Sbjct: 249 WAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSD 308
Query: 318 RYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFF 377
RYHLMPIITPAYPQQNST+NVS+STR +M EEFKQG I+++I K W KLFE PNFF
Sbjct: 309 RYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFF 368
Query: 378 TKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVI 437
KY+HY+VL+AS+ + + +LEW GL+ESK+R L+G+LE+N I LAHVNP+ +
Sbjct: 369 QKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFP------ 422
Query: 438 ANGSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFI----AANVILNLTYDIQHFTN 493
+P+ + +E +MW IGL F + N+ ++LTYDIQ FT+
Sbjct: 423 -----APKENPDKEE------------FRTMWVIGLVFKKTENSENLSVDLTYDIQSFTD 465
Query: 494 AVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKK-TKSGDQNTSAKKRKSDQ 552
V+ QA SKM + MKI HVK+KQL + LP H+L+K KK + G + T+ D
Sbjct: 466 TVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPNHVLQKKKKHSTEGVKLTALNDSSLDL 525
Query: 553 ALDELGDKSRPRLDSDSNSLSDKVNNISNNGDQSSSECTEDNSLSQVYGLNDSV 606
++D S P S + + S ++ S+ G S + S++ + SV
Sbjct: 526 SMDSDNSMSVPSPTSATKT-SPLNSSGSSQGRNSPAPAVTAASVTNIQATEVSV 578
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1
Length = 636
Score = 632 bits (1629), Expect = e-180, Method: Compositional matrix adjust.
Identities = 312/516 (60%), Positives = 387/516 (75%), Gaps = 28/516 (5%)
Query: 29 YGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEV 88
YG+++ ++L+ P + D T+ L E L+P+ V E +EEL R+ VL KLNNLVKEWI+E+
Sbjct: 20 YGVSSPISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQRRILVLEKLNNLVKEWIREI 79
Query: 89 SIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKT 148
S +K++P +V E VGGKI+TFGSYRLGVH KGADIDALCVAP HVDR+D+F+SF+ KLK
Sbjct: 80 SESKSLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPSHVDRSDFFTSFYAKLKL 139
Query: 149 VDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVR 208
+EV DLRAVEEAFVPVIK+ FDGIEID+LFARLAL+ IP+D+DLRDD LLKNLD +C+R
Sbjct: 140 QEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIR 199
Query: 209 SLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQL 268
SLNGCRVTDEIL LVPNI+NFRL LR IKLWAK H IYSN+LG+LGGVSWAMLVAR CQL
Sbjct: 200 SLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQL 259
Query: 269 YPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPA 328
YPNA ASTLV KFFLVFS+W+WP PVLLK+P+ NL PVWDPRVN +DRYHLMPIITPA
Sbjct: 260 YPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPA 319
Query: 329 YPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIA 388
YPQQNST+NVSISTR +M EEFKQG I+ +I K W KLFE P+FF KY+HY+VL+A
Sbjct: 320 YPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWSKLFEAPSFFQKYKHYIVLLA 379
Query: 389 SSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEITA 448
S+ + + LEW GL+ESK+R L+G+LE+N I LAHVNP+ +
Sbjct: 380 SASTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFP----------------- 422
Query: 449 EGKEEGGENTSPPVSGVASMWFIGLDFIAAN----VILNLTYDIQHFTNAVHWQATQSKM 504
+P + +MW IGL + + ++LTYDIQ FT+ V+ QA SKM
Sbjct: 423 ------APKENPDMEEFRTMWVIGLGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKM 476
Query: 505 MKDGMKIEVRHVKKKQLSEYLPAHMLKKDKKTKSGD 540
+ GMKI H+++K+L + LP H+L +DKK S +
Sbjct: 477 FEMGMKITAMHLRRKELHQLLPHHVL-QDKKAHSTE 511
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 631 bits (1627), Expect = e-180, Method: Compositional matrix adjust.
Identities = 313/514 (60%), Positives = 387/514 (75%), Gaps = 29/514 (5%)
Query: 26 PVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWI 85
P T+G+T+ ++L+ D ++L E LKPY V E +E+L R +L KLNNLVKEWI
Sbjct: 1 PKTFGITSPISLAAAKDTDCTLMQKLIETLKPYGVFEEEEQLQHR--ILGKLNNLVKEWI 58
Query: 86 KEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEK 145
+E+S K++P +V E VGGKI+TFG YRLGVH KGADIDALCVAPRHVDR+D+FSSF++K
Sbjct: 59 REISELKHLPQSVIENVGGKIFTFGPYRLGVHTKGADIDALCVAPRHVDRSDFFSSFYDK 118
Query: 146 LKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQK 205
LK +EV DLR+VEEAFVPVIK+ FDGIEID+LFARLAL+ IP+D+DLRDD LLKNLD +
Sbjct: 119 LKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 178
Query: 206 CVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARI 265
C+RSLNGCRVTDEIL LVPNI++FRL LR IKLWAK+H IYSN+LG+LGGVSWAMLVAR
Sbjct: 179 CIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 238
Query: 266 CQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPII 325
CQLYPNA ASTLV KFFLVFS+W+WP PVLLK+P+ NL PVWDPRVN +DRYHLMPII
Sbjct: 239 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPII 298
Query: 326 TPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLV 385
TPAYPQQNST+NVS+STR +M EEFKQG I+++I GK W KLF+ PNFF KY+HY++
Sbjct: 299 TPAYPQQNSTYNVSVSTRAVMIEEFKQGLAITDEILLGKAEWSKLFDAPNFFQKYKHYIL 358
Query: 386 LIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPE 445
L+AS+ + + +LEW GL+ESK+R L+G+LE+N I LAHVNP + +P
Sbjct: 359 LLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPRSFP-----------APS 407
Query: 446 ITAEGKEEGGENTSPPVSGVASMWFIGLDFI----AANVILNLTYDIQHFTNAVHWQATQ 501
E +E +MW IGL F + N+ ++LTYDIQ FT+ V QA
Sbjct: 408 ENMEKEE------------FRTMWVIGLVFKKMENSENLSVDLTYDIQSFTDTVDRQAIN 455
Query: 502 SKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKK 535
SKM + MKI HVK+KQL + P+H+ K KK
Sbjct: 456 SKMFETEMKIAAMHVKRKQLHQLQPSHVSPKKKK 489
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 630 bits (1624), Expect = e-179, Method: Compositional matrix adjust.
Identities = 311/522 (59%), Positives = 393/522 (75%), Gaps = 27/522 (5%)
Query: 17 QDGKPQSQAPVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSK 76
Q + + AP +G+++ ++L+ P D + T++L E L+P+ V E +EEL R+ +L K
Sbjct: 8 QGAQQPAPAPKQFGISSPISLAAPKDTDRELTQKLIETLQPFGVFEEEEELQRRILILQK 67
Query: 77 LNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRA 136
LNNLVKEWI+E+S ++N+P V E VGGKI+TFGSYRLGVH KGADIDALCVAPRHVDR
Sbjct: 68 LNNLVKEWIREISESRNLPQAVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRN 127
Query: 137 DYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDD 196
D+F+SF++KLK +EV DLRAVEEAFVPVIK+ FDGIEID+LFARLAL+ IP+D+DLRDD
Sbjct: 128 DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDD 187
Query: 197 MLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGV 256
LLKNLD +C+RSLNGCRVTDEIL LVPNI++FRL LR IKLWAK H IYSN+LG+LGGV
Sbjct: 188 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGV 247
Query: 257 SWAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVA 316
SWAMLVAR CQLYPNA ASTLV KFFLVFS+W+WP PVLLK+P+ NL PVWDPRVN +
Sbjct: 248 SWAMLVARTCQLYPNAIASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPS 307
Query: 317 DRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNF 376
DRYHLMPIITPAYPQQNST+NVS+STR +M EEFKQG I+ +I K W KLFE P+F
Sbjct: 308 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSF 367
Query: 377 FTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGV 436
F KY+HY+VL+AS+ + + LEW GL+ESK+R L+G+LE+N I LAHVNP+ +
Sbjct: 368 FQKYKHYIVLLASAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFP----- 422
Query: 437 IANGSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFIAAN----VILNLTYDIQHFT 492
+P+ TA+ +E +MW IGL + ++LTYDIQ FT
Sbjct: 423 ------APKETADKEE------------FRTMWVIGLVLKKPENSEILSIDLTYDIQSFT 464
Query: 493 NAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDK 534
+ V+ QA SKM + MKI H+++K+L + LP H+L+K +
Sbjct: 465 DTVYRQAINSKMFEMDMKIAAMHLRRKELHQLLPNHVLQKKE 506
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 525 bits (1353), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/364 (70%), Positives = 302/364 (82%), Gaps = 2/364 (0%)
Query: 19 GKPQSQAPVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLN 78
G QSQ TYG+T+ ++L+ P D T++L E LKPY V E ++EL R+ L KLN
Sbjct: 9 GSQQSQK--TYGITSPISLATPKDTDCTLTQKLIETLKPYGVFEEEDELQHRILSLGKLN 66
Query: 79 NLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADY 138
NLVKEWI+E+S KN+P +V E VGGKI+TFGSYRLGVH KGADIDALCVAPRHVDR+D
Sbjct: 67 NLVKEWIREISELKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDL 126
Query: 139 FSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDML 198
FSSF+EKLK +EV DLR+VEEAFVPVIK+ FDGIEID+LFARLAL+ IP+D+DLRDD L
Sbjct: 127 FSSFYEKLKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSL 186
Query: 199 LKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSW 258
LKNLD +C+RSLNGCRVTDEIL LVPNI++FRL LR IKLWAK+H IYSN+LG+LGGVSW
Sbjct: 187 LKNLDIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSW 246
Query: 259 AMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADR 318
AMLVAR CQLYPNA ASTLV KFFLVFS+W+WP PVLLK+P+ NL PVWDPRVN +DR
Sbjct: 247 AMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDR 306
Query: 319 YHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFT 378
YHLMPIITPAYPQQNST+NVS+STR +M EEFKQG I+++I K W KLF+ PNFF
Sbjct: 307 YHLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLLKAEWSKLFDAPNFFQ 366
Query: 379 KYRH 382
KY++
Sbjct: 367 KYKY 370
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1
Length = 809
Score = 456 bits (1174), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/551 (43%), Positives = 342/551 (62%), Gaps = 40/551 (7%)
Query: 26 PVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWI 85
P G+T ++ +PP+ +D + + EL L +N+ E+ EE R E+L KLN +V+EW
Sbjct: 50 PTILGVTEPISTAPPSSIDFKLSTELENTLISFNLFESPEESRKREEILGKLNQIVREWA 109
Query: 86 KEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEK 145
K+VS+ K P A +V KI+TFGSYRLGVH G+DID LCV P+H+ R+D+F +
Sbjct: 110 KQVSLKKGYPEQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHIMRSDFFDDLSDI 169
Query: 146 LKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDM-DLRDDMLLKNLDQ 204
LK E+T+ V++AFVPVI M F GI ID+++A+LAL IP+++ DL D+ LKN+D+
Sbjct: 170 LKVHPEITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDE 229
Query: 205 KCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVAR 264
K + SLNGCRVTD+IL+LVPNI NFR+ALR IKLWA + GIYSN+LG+LGGVSWA+L AR
Sbjct: 230 KSILSLNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTAR 289
Query: 265 ICQLYPNAAASTLVCKFFLVFSQWKWPQPVLL-KKPDNVNLGFPVWDPRVNVADRYHLMP 323
ICQLYPN+A ST++ +FF V+ WKWP P+LL + LG VW+P+ D+ HLMP
Sbjct: 290 ICQLYPNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPK---RDKAHLMP 346
Query: 324 IITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHY 383
IITPAYP NST+NVS ST +M+ EF +G I+ I G+ W L E +FFT+Y Y
Sbjct: 347 IITPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSFY 406
Query: 384 LVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGS 443
+ + S++ ED +W G IESK+R LI NLE P + A P+ +T+ + + +
Sbjct: 407 IEIDCYSMNEEDSRKWEGWIESKLRFLISNLESTPKMKFAVPYPKGFTNN----LHKANN 462
Query: 444 PEITAEGKEEGGENTSPPVSGVASMWFIGLDFIAANV-----ILNLTYDIQHFTNAVH-W 497
P+ + + +F+GL F +N ++LT + FT + W
Sbjct: 463 PD------------------QICTSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDW 504
Query: 498 QATQSKMMKDGMKIEVRHVKKKQLSEYL----PAHMLKKDKKTKS-GDQNTSAKKRKSDQ 552
TQ D M I+V+++KKKQL ++ P +K KK S G+ + + KK KS+
Sbjct: 505 LRTQPN--PDTMDIKVQYIKKKQLPAFVKDEGPEEPVKTTKKRSSTGEPSATRKKLKSEN 562
Query: 553 ALDELGDKSRP 563
+ ++L P
Sbjct: 563 SDNKLNSPKSP 573
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 184/396 (46%), Positives = 272/396 (68%)
Query: 29 YGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEV 88
+G+T ++ +P + + L LK N+ E+ E R++VL +L + E++K+V
Sbjct: 6 WGITPPISTAPATEQENALNTALINELKNQNLFESPAESEKRVKVLDELQQITTEFVKKV 65
Query: 89 SIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKT 148
S+AK++ +A + GGKI+T+GSYRLGV+ G+DID L V P+HV R ++F L+
Sbjct: 66 SLAKHMNEKMANEAGGKIFTYGSYRLGVYGPGSDIDTLVVVPKHVSRDNFFQDLEPMLRE 125
Query: 149 VDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVR 208
+EVTDL AV +A+VP+IK F GI ID++FARL++ +P D++L D+ LLK ++++CV
Sbjct: 126 REEVTDLAAVPDAYVPIIKFKFLGISIDLIFARLSVPRVPRDLELSDNNLLKGVEERCVL 185
Query: 209 SLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQL 268
SLNG RVTD+IL+LVPN F+ ALR IK WA++ IY+NV+G+ GGV+WAM+VARICQL
Sbjct: 186 SLNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAWAMMVARICQL 245
Query: 269 YPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPA 328
YPNA +S +V KFF + QW WPQP+LLK ++ L +W+P++ +D+ H MPIITPA
Sbjct: 246 YPNAVSSVIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPIITPA 305
Query: 329 YPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIA 388
YP +T N+++ST+TI+ E + I++ I W LF+ +FF +Y+HYL + A
Sbjct: 306 YPSMCATHNITLSTQTIILREMVRAGEIADQIMVKALPWSALFQKHDFFHRYKHYLTITA 365
Query: 389 SSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAH 424
++ +AE QL+W GL+ESK+RHL+ LE I LAH
Sbjct: 366 AAKTAEAQLKWAGLVESKLRHLVTRLELVDAIALAH 401
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/407 (45%), Positives = 275/407 (67%), Gaps = 1/407 (0%)
Query: 28 TYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKE 87
TYG+T ++ + P + L + LK E+++ R+EVL+ LV+E++
Sbjct: 5 TYGVTEPISTNGPTPKENILNDALIQELKNRGSFESEQATKKRVEVLTLFQRLVQEFVYT 64
Query: 88 VSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLK 147
VS +KN+ ++A+ GGK++TFGSYRLGV+ G+DID L V P+HV R D+FS F + ++
Sbjct: 65 VSKSKNMSDSMAQDAGGKVFTFGSYRLGVYGPGSDIDTLVVVPKHVTRDDFFSVFADIIR 124
Query: 148 TVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCV 207
E+ ++ V +A+VP+IK+ FDGI ID++ ARL + +P D+ L D LLKNLD+K +
Sbjct: 125 KRPELEEIACVPDAYVPIIKLEFDGISIDLIMARLNIPRVPLDLTLDDKNLLKNLDEKDL 184
Query: 208 RSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQ 267
RSLNG RVTDEIL+LVP F+ ALR IKLWA++ +Y N+ G+ GGV+WAMLVARICQ
Sbjct: 185 RSLNGTRVTDEILQLVPKPTVFKHALRCIKLWAQQRAVYGNIFGFPGGVAWAMLVARICQ 244
Query: 268 LYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITP 327
LYPNA +S +V KFF ++++W WP+PVLLK ++ L VW+PR+ DR H MP+ITP
Sbjct: 245 LYPNAVSSAIVEKFFNIYTKWNWPEPVLLKSIEDGPLQVRVWNPRLYPHDRLHRMPVITP 304
Query: 328 AYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLI 387
AYP +T N++ ST+ ++ E +G +I ++I+ GK W LFE +FF KY+ YL ++
Sbjct: 305 AYPSMCATHNITSSTQKVILAELSRGSSIMQEIHAGKKTWSDLFEKHSFFYKYKFYLCVV 364
Query: 388 ASSV-SAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDT 433
A+S+ SAE+ +W G IESK+R L+ LE + +AH + +++T
Sbjct: 365 AASIDSAEEHKKWSGFIESKLRQLVLKLEVAEGVEIAHPYVKDFSNT 411
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 217/548 (39%), Positives = 319/548 (58%), Gaps = 29/548 (5%)
Query: 28 TYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKE 87
YG+T ++++ + + L + LK E++ R+EVL+ L ++ +E++ +
Sbjct: 5 AYGVTPPISVANSTPKENELNDSLIKELKSRGSFESETATKKRVEVLNILQSMTEEFVYK 64
Query: 88 VSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLK 147
VSI KNI +A VGGKI+TFGSYRLGV+ G+DID L V P+HV R D+F F+E LK
Sbjct: 65 VSIKKNISEGMARDVGGKIFTFGSYRLGVYGPGSDIDTLVVVPKHVSRNDFFEVFYELLK 124
Query: 148 TVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCV 207
E+ ++ V +AFVP+IK+ F GI ID++FARL + +P D+ L D LLKN+D+K +
Sbjct: 125 GRSELEEIAPVPDAFVPIIKIEFAGISIDLIFARLDIPRVPRDLTLDDKNLLKNIDEKDL 184
Query: 208 RSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQ 267
R+LNG RVTDEIL+LVP F+ ALR IK+WA++ +Y N+ G+ GGV+WAMLVARICQ
Sbjct: 185 RALNGTRVTDEILQLVPKPTVFKHALRCIKMWAQQRAVYGNIFGFPGGVAWAMLVARICQ 244
Query: 268 LYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITP 327
LYPNA ++ +V KFF ++SQW WPQPVLLK+ ++ L VW+PR+ DR H MP+ITP
Sbjct: 245 LYPNAVSAVIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYALDRQHRMPVITP 304
Query: 328 AYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLI 387
AYP +T N++ ST+ ++ EF++G + DI GK W L E +FF +Y+ YL ++
Sbjct: 305 AYPSMCATHNITSSTQKVILSEFQRGIELMNDINVGKKSWSDLLERHDFFFRYKFYLCIV 364
Query: 388 ASSVSA-EDQLEWCGLIESKVRHLIGNLERNPHINLAHV------------NPECYTDTT 434
A++ S + L++ G++ESK+R L+ LE I LAH N E +
Sbjct: 365 AATRSTYAEHLKYSGMVESKLRLLVQKLELVEGIELAHPYVKSFENGYYCDNAEEAHEIM 424
Query: 435 GVIANGSGSPEIT----AEGKEEGGENTSPPVSGVASMWFIGLDF---IAANVILNLTYD 487
+ G + AE + EN V + FIGL L++ Y
Sbjct: 425 NLYGTSKGDDRVKGVLHAENNDNNKENVENKVELHMTKLFIGLKLDLSKEGEKKLDIQYP 484
Query: 488 IQHFTNAVH-WQATQSKMMKDGMKIEVRHVKKKQLSE--YLPAHM--LKKDKKTKSGDQN 542
F N WQ S + I++++VK LS+ Y+ +K K+ ++ +N
Sbjct: 485 CAEFFNICKGWQDFDS----EKHFIQIKNVKLYDLSDDVYVDGETRPIKIAKRKRAVSKN 540
Query: 543 TSAKKRKS 550
KK KS
Sbjct: 541 EGKKKPKS 548
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/467 (42%), Positives = 290/467 (62%), Gaps = 21/467 (4%)
Query: 28 TYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKE 87
+G+T ++ + + L + LK ET++E ++R++VL L L + ++ E
Sbjct: 6 VFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYE 65
Query: 88 VSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLK 147
VS KN+ +A GGKI+T+GSYRLGVH G+DID L V P+HV R D+F+ F L+
Sbjct: 66 VSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLR 125
Query: 148 TVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCV 207
E+ ++ V +AFVP+IK+ F GI ID++ ARL ++P + L D LL+NLD+K +
Sbjct: 126 ERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEKDL 185
Query: 208 RSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQ 267
R+LNG RVTDEIL LVP FR+ALR IKLWA++ +Y+N+ G+ GGV+WAMLVARICQ
Sbjct: 186 RALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQ 245
Query: 268 LYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITP 327
LYPNA ++ ++ +FF++ S+W WPQPV+LK ++ L VW+P++ DR H MP+ITP
Sbjct: 246 LYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITP 305
Query: 328 AYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLI 387
AYP +T N++ ST+ ++ +EF +G I+ DI++ K W LFE +FF +Y+ YL +
Sbjct: 306 AYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEIT 365
Query: 388 ASSVSAEDQ-LEWCGLIESKVRHLIGNLERNPHINLAHVNPE-------CYT-DTTGVIA 438
A + +++Q L+W GL+ESKVR L+ LE I +AH + C T D +I
Sbjct: 366 AYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKIAHPFTKPFESSYCCPTEDDYEMIQ 425
Query: 439 NGSGSPE----------ITAEGKEEGGENTSPPVSGVASMWFIGLDF 475
+ GS + +T E KEE +P S +IGLDF
Sbjct: 426 DKYGSHKTETALNALKLVTDENKEEESIKDAP--KAYLSTMYIGLDF 470
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1
Length = 484
Score = 319 bits (818), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 154/280 (55%), Positives = 196/280 (70%), Gaps = 27/280 (9%)
Query: 260 MLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRY 319
MLVAR CQLYPNA ASTLV KFFLVFS+W+WP PVLLK+P+ NL PVWDPRVN +DRY
Sbjct: 1 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRY 60
Query: 320 HLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTK 379
HLMPIITPAYPQQNST+NVS+STR +M EEFKQG I+++I K W KLF+ PNFF K
Sbjct: 61 HLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLVKAEWSKLFDAPNFFQK 120
Query: 380 YRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIAN 439
Y+HY++L+AS+ + + +LEW GL+ESK+R L+G+LE+N I LAHVNP+ +
Sbjct: 121 YKHYILLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSF--------- 171
Query: 440 GSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFI----AANVILNLTYDIQHFTNAV 495
SP +E +E +MW IGL F + N+ ++LTYDIQ FT+ V
Sbjct: 172 --PSPSENSEKEE------------FRTMWVIGLVFKKMENSENLSVDLTYDIQSFTDTV 217
Query: 496 HWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKK 535
+ QA SKM + +KI HVK+KQL + LP+H+L K KK
Sbjct: 218 YRQAINSKMFETEIKIAAMHVKRKQLHQLLPSHVLPKKKK 257
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 191 bits (486), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 229/462 (49%), Gaps = 19/462 (4%)
Query: 50 ELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTF 109
EL E L ++ +++ + + +SK+ +++W K++ I + IY +
Sbjct: 4 ELKEFLVKNDMYPMGDQVEKKRKAISKMTEYIQQWGKKIYIESAGVADDTDVKAATIYVY 63
Query: 110 GSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMN 169
GSYRL V+ +DIDA V+ + R D++ + +L +V +L+ + P + M
Sbjct: 64 GSYRLNVYGNNSDIDACIVSNSTITRDDFYDGLYAELLNNPDVKELKQIPSKRSPHLSMI 123
Query: 170 FDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPN--IE 227
+ IE D+ F+R A +PD++D+ ++ +LKN+D+ R++NG R TD I VPN E
Sbjct: 124 YLNIEFDLNFSRTAYTSLPDNLDILNENILKNMDELDTRAINGVRNTDIIDAFVPNHSEE 183
Query: 228 NFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFSQ 287
FR+ +RTIKLW KK GIY V +L G+S +LVA++ L+ KFF V+S
Sbjct: 184 AFRVMVRTIKLWTKKRGIYGYVYCFLNGISIEILVAQVISENYQLDNVRLLEKFFQVYSS 243
Query: 288 WKWPQ-PVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIM 346
W W + PV+L D+ N D + + ++ I+TPA P +N+ F+++ + ++
Sbjct: 244 WDWLRTPVMLGTNDDFN------DKK-----KEGVIQILTPASPSENAAFSITKFSLEMI 292
Query: 347 QEEFKQGKTISEDIYN-GKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIES 405
+ E K+G+ I + + G W KLF+ + F Y ++ I +S S E G ES
Sbjct: 293 KRELKRGQEIVHEFSSEGVNDWAKLFKPRHLFCGYYIFIEFIVTSSSLEGLTTTIGKFES 352
Query: 406 KVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEITAEGKEEGGENTSPPVSGV 465
+ +L+ L I A+V P + D N + K + + S P++
Sbjct: 353 GLVNLMKGLSEIEEIIEANVIPNGFLDE----ENEKYFYYVGMNVKRDCPVDISTPLNSF 408
Query: 466 ASMWFIGLDFIAANVILNLTYDIQHFTNAVHWQATQSKMMKD 507
S+ G D I I + F ++V T+S+ +K+
Sbjct: 409 LSIVNSGKDLIVDASIKKRSEIPTKFAHSVKRSITKSQEIKE 450
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 53/246 (21%)
Query: 86 KEVSIAKNIPPTVAEKV-----GGKIYTFGSYRLGVHHKGADIDALCVAPRHV---DRAD 137
+E+ I T+ E V ++ FGSY ++ G+DID CV + + +
Sbjct: 195 EEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDID--CVVTSELGGKESRN 252
Query: 138 YFSSFFEKLKTVDEVTDLRAVEEAFVPVIKM--NFDGIEIDMLFARLALKEIPDDMDLRD 195
S LK + T++ V +A VP+IK GI ID+ F R
Sbjct: 253 NLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIDVSFER-------------- 298
Query: 196 DMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGG 255
+ ++ E L P + L ++ + + +++ G LGG
Sbjct: 299 -----------TNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHT---GGLGG 344
Query: 256 VSWAMLVARICQLYPNAAAS---------TLVCKFFLVFSQWKWPQPVLLKKPDNVNLGF 306
S LV ++P + L+ +FF ++ + V L D G+
Sbjct: 345 FSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSD----GY 400
Query: 307 PVWDPR 312
PV+ P+
Sbjct: 401 PVYFPK 406
>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5
PE=2 SV=2
Length = 633
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 56/238 (23%)
Query: 60 VSETDEELSSRMEVLSKLNNLVKE-WIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHH 118
+S EE RMEV+S++ +++KE W P+ + FGS++ G++
Sbjct: 145 MSPRPEEEKMRMEVVSRIESVIKELW-----------PSA------DVQIFGSFKTGLYL 187
Query: 119 KGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKM--NFDGIEID 176
+DID + K K DE ++ +++A VP+IK+ +F +++D
Sbjct: 188 PTSDIDLVVFGKWENLPLWTLEEALRKHKVADE-DSVKVLDKATVPIIKLTDSFTEVKVD 246
Query: 177 MLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTD---EILRLVPNIENFRLAL 233
+ F N+ NG R D + + P + L L
Sbjct: 247 ISF---------------------NVQ-------NGVRAADLIKDFTKKYPVLPYLVLVL 278
Query: 234 RTIKLWAKKHGIYSNVLG----YLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFSQ 287
+ L + +++ +G +L VS+ L R PN L+ +FF ++ +
Sbjct: 279 KQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYGVLLIEFFELYGR 336
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 56/226 (24%)
Query: 60 VSETDEELSSRMEVLSKLNNLV-KEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHH 118
++ T EE + R ++S++N V ++W P V+ +Y FGS+ ++
Sbjct: 252 ITPTPEEHAVRKTLVSRINQAVLQKW-----------PDVS------LYVFGSFETKLYL 294
Query: 119 KGADIDALCVAPRHVDRA---DYF--SSFFEKLKTVDEVTDLRAVEEAFVPVIKM--NFD 171
+D+D + ++P H R D F + +KLK EV + + A VP+IK
Sbjct: 295 PTSDLDLVIISPEHHYRGTKKDMFVLAHHLKKLKLASEV---QVITTANVPIIKFVDPLT 351
Query: 172 GIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRL 231
+ +D+ F + L C V + ++ P + R
Sbjct: 352 KVHVDISFNQPG-------------------------GLKTCLVVNGFMKKYPAL---RP 383
Query: 232 ALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNAAASTL 277
+ IK + + LG L + LV QL+P + ++
Sbjct: 384 LVIIIKHFLNMRALNEVFLGGLSSYAIVCLVVSFLQLHPRLSTGSM 429
>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5
PE=1 SV=2
Length = 572
Score = 36.6 bits (83), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 96/238 (40%), Gaps = 56/238 (23%)
Query: 60 VSETDEELSSRMEVLSKLNNLVKE-WIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHH 118
+S EE RMEV++++ +++KE W P+ ++ FGS++ G++
Sbjct: 131 MSPRPEEEKMRMEVVNRIESVIKELW-----------PSADVQI------FGSFKTGLYL 173
Query: 119 KGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKM--NFDGIEID 176
+DID + K K DE ++ +++A VP+IK+ +F +++D
Sbjct: 174 PTSDIDLVVFGKWENLPLWTLEEALRKHKVADE-DSVKVLDKATVPIIKLTDSFTEVKVD 232
Query: 177 MLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTD---EILRLVPNIENFRLAL 233
+ F N+ NG R D + + P + L L
Sbjct: 233 ISF---------------------NVQ-------NGVRAADLIKDFTKKYPVLPYLVLVL 264
Query: 234 RTIKLWAKKHGIYSNVLG----YLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFSQ 287
+ L + +++ +G +L VS+ L R PN L+ +FF ++ +
Sbjct: 265 KQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYGVLLIEFFELYGR 322
>sp|A7TDI2|LIAS_NEMVE Lipoyl synthase, mitochondrial OS=Nematostella vectensis
GN=v1g225637 PE=3 SV=1
Length = 291
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 197 MLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNV----LGY 252
M+L N+ C RS C V V E ++A R+IKL KH + ++V L
Sbjct: 65 MILGNI---CTRSCGFCGVKTGRPETVDWDEPEKVA-RSIKLMKIKHAVITSVDRDDLKD 120
Query: 253 LGGVSWAMLVARICQLYPNAAASTLVCKF 281
+G + WA V I ++ PN TL+ F
Sbjct: 121 MGSIIWAETVKAIRRMNPNTTLETLIPDF 149
>sp|P42525|ERK1_DICDI Extracellular signal-regulated kinase 1 OS=Dictyostelium discoideum
GN=erkA PE=2 SV=2
Length = 529
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 380 YRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVI 437
Y H + LI ++ + + + C + + R I N+ P +N A++ P+ D ++
Sbjct: 357 YIHQITLIIETIGSPSEEDICNIANEQARQFIRNMGNQPKVNFANMFPKANPDAIDLL 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 248,426,549
Number of Sequences: 539616
Number of extensions: 10801802
Number of successful extensions: 44699
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 38160
Number of HSP's gapped (non-prelim): 4537
length of query: 654
length of database: 191,569,459
effective HSP length: 124
effective length of query: 530
effective length of database: 124,657,075
effective search space: 66068249750
effective search space used: 66068249750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)