Query psy18158
Match_columns 654
No_of_seqs 245 out of 715
Neff 5.1
Searched_HMMs 46136
Date Sat Aug 17 00:03:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2245|consensus 100.0 1E-147 3E-152 1184.3 40.8 490 25-538 11-502 (562)
2 PTZ00418 Poly(A) polymerase; P 100.0 1E-135 3E-140 1128.6 53.1 485 24-536 47-542 (593)
3 COG5186 PAP1 Poly(A) polymeras 100.0 7E-126 2E-130 983.8 35.0 499 26-529 4-522 (552)
4 PF04928 PAP_central: Poly(A) 100.0 3.7E-74 8.1E-79 588.9 21.6 254 26-374 1-254 (254)
5 PF04926 PAP_RNA-bind: Poly(A) 100.0 3.9E-32 8.5E-37 259.7 10.1 152 375-536 1-157 (157)
6 COG5260 TRF4 DNA polymerase si 100.0 1.2E-30 2.6E-35 282.9 22.8 265 43-359 53-342 (482)
7 KOG1906|consensus 100.0 2.2E-28 4.7E-33 270.3 23.7 274 36-359 51-341 (514)
8 cd05402 NT_PAP_TUTase Nucleoti 99.8 5.7E-19 1.2E-23 159.3 12.7 97 69-181 1-100 (114)
9 KOG2277|consensus 99.7 4.1E-16 8.8E-21 176.8 20.2 251 60-360 125-431 (596)
10 TIGR03671 cca_archaeal CCA-add 99.6 1.2E-12 2.7E-17 142.6 28.8 295 52-418 3-315 (408)
11 PRK13300 tRNA CCA-pyrophosphor 99.5 1.2E-11 2.5E-16 136.7 30.3 298 52-418 4-318 (447)
12 PF03813 Nrap: Nrap protein; 99.1 1.4E-08 2.9E-13 122.5 26.4 288 111-416 1-364 (972)
13 COG1746 CCA1 tRNA nucleotidylt 99.1 1.5E-08 3.1E-13 110.4 22.0 300 49-418 5-319 (443)
14 smart00572 DZF domain in DSRM 98.0 0.00037 8E-09 72.3 18.6 213 106-357 5-229 (246)
15 KOG2054|consensus 98.0 7.6E-05 1.7E-09 88.4 14.6 163 218-391 299-466 (1121)
16 cd05400 NT_2-5OAS_ClassI-CCAas 97.7 0.0003 6.5E-09 65.9 10.9 76 103-181 27-110 (143)
17 PF03828 PAP_assoc: Cid1 famil 97.6 3.1E-05 6.8E-10 62.6 1.7 57 273-331 1-59 (60)
18 cd05397 NT_Pol-beta-like Nucle 97.5 0.00014 3.1E-09 57.3 4.1 26 103-128 17-42 (49)
19 PF01909 NTP_transf_2: Nucleot 97.3 0.00028 6.2E-09 60.8 4.3 31 104-134 15-45 (93)
20 cd05403 NT_KNTase_like Nucleot 97.0 0.0038 8.3E-08 53.2 8.1 32 104-135 19-50 (93)
21 PF03813 Nrap: Nrap protein; 96.9 0.012 2.7E-07 71.9 14.2 157 212-373 668-839 (972)
22 PF09249 tRNA_NucTransf2: tRNA 96.8 0.0031 6.7E-08 58.3 6.2 92 233-346 3-96 (114)
23 PF14091 DUF4269: Domain of un 96.4 0.04 8.7E-07 53.6 11.7 105 107-237 19-125 (152)
24 COG1669 Predicted nucleotidylt 95.7 0.048 1E-06 49.4 7.7 28 104-131 25-52 (97)
25 PRK13746 aminoglycoside resist 95.1 0.046 9.9E-07 57.6 6.8 32 105-136 30-61 (262)
26 PF07528 DZF: DZF domain; Int 94.5 1.7 3.6E-05 45.7 16.3 208 109-356 2-230 (248)
27 PF10421 OAS1_C: 2'-5'-oligoad 93.9 0.15 3.3E-06 51.4 6.9 46 227-272 42-88 (190)
28 COG1708 Predicted nucleotidylt 93.9 0.046 9.9E-07 49.1 2.9 28 103-130 26-53 (128)
29 cd00141 NT_POLXc Nucleotidyltr 93.0 1.8 3.9E-05 46.5 13.7 112 103-253 160-277 (307)
30 PRK02098 phosphoribosyl-dephos 91.5 0.41 8.8E-06 49.4 6.3 36 103-138 120-161 (221)
31 TIGR03135 malonate_mdcG holo-A 90.9 0.48 1E-05 48.2 6.1 36 103-138 108-149 (202)
32 KOG3793|consensus 88.4 34 0.00073 36.7 17.2 212 43-287 37-264 (362)
33 PF14792 DNA_pol_B_palm: DNA p 87.0 1.4 3E-05 40.6 5.7 51 103-154 24-78 (112)
34 COG1665 Predicted nucleotidylt 87.0 0.39 8.5E-06 50.8 2.3 27 106-132 124-150 (315)
35 cd05401 NT_GlnE_GlnD_like Nucl 81.3 7.9 0.00017 37.5 8.5 47 102-148 54-101 (172)
36 PF03445 DUF294: Putative nucl 80.0 9.5 0.00021 36.3 8.4 47 102-148 48-96 (138)
37 COG2844 GlnD UTP:GlnB (protein 79.1 7.2 0.00016 47.1 8.6 58 74-135 41-98 (867)
38 smart00483 POLXc DNA polymeras 78.2 31 0.00067 37.7 12.7 28 103-131 164-191 (334)
39 KOG2054|consensus 75.6 14 0.00031 45.6 9.7 114 214-331 806-926 (1121)
40 PRK00227 glnD PII uridylyl-tra 75.5 9.1 0.0002 45.8 8.2 64 68-146 6-69 (693)
41 PRK08609 hypothetical protein; 75.0 30 0.00066 40.5 12.2 108 103-253 175-283 (570)
42 PF10620 MdcG: Phosphoribosyl- 70.4 11 0.00025 38.5 6.6 40 103-142 116-161 (213)
43 PRK01759 glnD PII uridylyl-tra 69.0 19 0.00041 44.2 9.0 56 73-132 30-85 (854)
44 PRK05007 PII uridylyl-transfer 68.9 18 0.00039 44.6 8.9 56 73-132 54-109 (884)
45 PRK03059 PII uridylyl-transfer 65.7 21 0.00046 43.8 8.6 54 72-131 36-89 (856)
46 PF03710 GlnE: Glutamate-ammon 64.4 16 0.00035 38.0 6.4 59 90-148 113-179 (247)
47 PF09970 DUF2204: Nucleotidyl 60.3 1.1E+02 0.0024 30.5 11.2 76 103-183 16-95 (181)
48 PRK00275 glnD PII uridylyl-tra 55.6 44 0.00095 41.3 8.9 30 103-132 78-107 (895)
49 PF10127 Nuc-transf: Predicted 53.9 11 0.00024 38.9 3.0 26 105-130 22-47 (247)
50 PRK01293 phosphoribosyl-dephos 53.3 26 0.00056 36.1 5.5 35 103-137 109-149 (207)
51 PRK03381 PII uridylyl-transfer 52.7 49 0.0011 40.3 8.6 29 103-131 57-85 (774)
52 PRK14109 bifunctional glutamin 52.2 34 0.00073 42.9 7.3 47 102-148 722-773 (1007)
53 TIGR01693 UTase_glnD [Protein- 52.0 51 0.0011 40.4 8.7 29 103-131 43-71 (850)
54 PRK04374 PII uridylyl-transfer 49.5 60 0.0013 40.1 8.7 29 103-131 72-100 (869)
55 KOG2534|consensus 49.3 52 0.0011 36.2 7.1 46 103-149 171-217 (353)
56 PF03296 Pox_polyA_pol: Poxvir 47.0 20 0.00043 34.8 3.2 64 51-128 9-78 (149)
57 PF03281 Mab-21: Mab-21 protei 46.6 2.9E+02 0.0064 28.9 12.4 210 110-352 38-289 (292)
58 COG2413 Predicted nucleotidylt 46.3 42 0.00091 34.7 5.6 27 104-130 38-64 (228)
59 COG3541 Predicted nucleotidylt 37.4 16 0.00034 38.6 1.0 20 109-128 16-35 (248)
60 COG1796 POL4 DNA polymerase IV 37.2 56 0.0012 35.8 5.2 70 104-181 181-250 (326)
61 PHA02996 poly(A) polymerase la 36.7 34 0.00074 38.4 3.6 62 53-128 128-195 (467)
62 PRK11072 bifunctional glutamin 34.3 1.2E+02 0.0027 37.8 8.2 47 102-148 153-208 (943)
63 PRK11072 bifunctional glutamin 33.5 1.2E+02 0.0025 38.0 7.8 59 90-148 667-736 (943)
64 PF10281 Ish1: Putative stress 31.1 30 0.00066 25.8 1.5 31 48-79 6-36 (38)
65 PRK14109 bifunctional glutamin 30.7 1.6E+02 0.0035 37.0 8.5 46 103-148 215-265 (1007)
66 PRK14108 bifunctional glutamin 29.8 2.8E+02 0.0061 35.0 10.2 47 102-148 185-238 (986)
67 PRK05092 PII uridylyl-transfer 27.8 3.7E+02 0.0081 33.5 10.8 29 103-131 105-133 (931)
68 PHA02603 nrdC.11 hypothetical 25.4 40 0.00088 37.0 1.8 24 106-129 6-29 (330)
69 PF12633 Adenyl_cycl_N: Adenyl 23.6 1.2E+02 0.0026 31.3 4.7 32 105-136 99-130 (204)
70 PRK14108 bifunctional glutamin 22.4 2.2E+02 0.0048 35.8 7.5 46 103-148 701-757 (986)
No 1
>KOG2245|consensus
Probab=100.00 E-value=1.4e-147 Score=1184.29 Aligned_cols=490 Identities=57% Similarity=0.972 Sum_probs=471.9
Q ss_pred CCccccccccccCCCCChHhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCc
Q psy18158 25 APVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGG 104 (654)
Q Consensus 25 ~~~~~Gvt~Pis~~~Pt~~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~ 104 (654)
+++.||||+|||+++|+++|+++|.+|+++|+++|+||++||..+|++||++|++||++|+++++.++|+|++++..+||
T Consensus 11 ~~~~~Gvt~PiS~a~p~~~d~~lt~~L~~~L~~~g~fEs~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~~p~~~~~~agg 90 (562)
T KOG2245|consen 11 STKSYGVTQPISTAGPTEADIALTQELIKTLKNEGLFESKEETQRREEVLGKLNQIVKEWVKKVSEQKGLPDGMIENAGG 90 (562)
T ss_pred ccccccccCCcccCCCcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEeeccc
Q psy18158 105 KIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLAL 184 (654)
Q Consensus 105 kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~ 184 (654)
+|+||||||||||+||||||++||+|+|++|+|||..|.++|+++++|++|++|++|+||||||+|+||+|||+||++++
T Consensus 91 kIftfGSYRLGVhg~GADIDtLcV~Prhv~R~DFF~sf~~mL~~~~eVteL~~V~dAfVPiikfKf~GI~IDllfArL~l 170 (562)
T KOG2245|consen 91 KIFTFGSYRLGVHGPGADIDTLCVGPRHVSRSDFFTSFYDMLKERPEVTELHAVEDAFVPIIKFKFDGIEIDLLFARLAL 170 (562)
T ss_pred eEEeccceeecccCCCCCcceeeeccccccHHHHHHHHHHHHhcCccccccccccccccceEEEEecCeeeeeeehhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHH
Q psy18158 185 KEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVAR 264 (654)
Q Consensus 185 ~~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~ 264 (654)
+.||++|||.||++|+||||+|+||||||||||+||+|||+.+.||.+|||||+|||+||||+|.+||||||+|||||||
T Consensus 171 ~~VP~dldl~ddslLknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWAKrrgVYsN~~GF~GGV~wA~LVAR 250 (562)
T KOG2245|consen 171 PVVPEDLDLSDDSLLKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWAKRRGVYSNVMGFLGGVAWAMLVAR 250 (562)
T ss_pred ccCCCcccccchHhhhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCChHHHHHHHHHHHhcCCCCCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHH
Q psy18158 265 ICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRT 344 (654)
Q Consensus 265 icQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~ 344 (654)
+||+||||+++.||.+||.+|++|+||+||+|+.+++++++++||||+.|++||||+|||||||||+||+|||||+||++
T Consensus 251 iCQLYPNA~~s~Lv~kfF~ifs~W~WP~PVlL~~ie~~~L~~~VWdPr~n~~DryHlMPIITPAyP~~nsthNVS~ST~~ 330 (562)
T KOG2245|consen 251 ICQLYPNASPSTLVAKFFRVFSQWNWPNPVLLKPIEEGNLNLPVWDPRVNPSDRYHLMPIITPAYPQMNSTHNVSRSTLK 330 (562)
T ss_pred HHccCCCcchHHHHHHHHHHHhhccCCCceEeccccccccCccccCCCCCCCCcceecccccCCcccccccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhcCCCcchhhccceeEEEEEeCChhhhhhhHhHHHHHHHHHHHhhhcCCCcceec
Q psy18158 345 IMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAH 424 (654)
Q Consensus 345 ~I~~Ef~Ra~~i~~~i~~~~~~W~~Lfe~~~Ff~~Yk~yl~I~v~a~~~e~~~~w~G~VESrlR~Lv~~LE~~~~i~~a~ 424 (654)
+|++||+||.+||++|+.++..|.+|||+++||.+|||||+|+++|+++|++++|.||||||+|.|+.+||++..|.+||
T Consensus 331 Vi~~Ef~~g~~I~~~i~~~k~~W~~LFE~~~FF~rYk~yl~i~~~A~~~ed~l~w~G~vESriR~Lv~klE~~~~i~~ah 410 (562)
T KOG2245|consen 331 VITEEFKRGLEICDDIELNKLDWSDLFELYNFFSRYKHYLQITASAATEEDLLKWVGWVESRIRQLVLKLERNQVILIAH 410 (562)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHhhhhHHHHHHhhHheeeeeccChHHHhhhhhHHHHHHHHHHHHHHhhcceEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCccccCCCCCCccccccccCCCCCCCCCCcceeeEEEEeEEecccceecchhhhHHHHHHHHHHhhhhccc
Q psy18158 425 VNPECYTDTTGVIANGSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFIAANVILNLTYDIQHFTNAVHWQATQSKM 504 (654)
Q Consensus 425 ~~P~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fIGL~~~~~~~~~DL~~~i~~F~~~v~~~~~~~~~ 504 (654)
++|+.|.... . .. ....|.+.|||||.+.. ..++||+..|++|...+.+|+.+...
T Consensus 411 p~P~~f~~~~-----~-------~~-----------~~~~~~~~~~igl~~~e-~~~~Dlt~~iq~f~~~v~~q~~~~~~ 466 (562)
T KOG2245|consen 411 PNPKKFKDTY-----N-------CP-----------LEEDPESLWFIGLEFDE-NVKIDLTKDIQSFKKNVERQAVNLTL 466 (562)
T ss_pred CCcccccccc-----c-------CC-----------cccchhHhhhhcccccc-cccchhhhhHHHhhhhhhhcceeeee
Confidence 9999998543 0 00 12346889999999854 44499999999999999999999999
Q ss_pred cCCC--cEEEEEEecccccccccccccccccccCCC
Q psy18158 505 MKDG--MKIEVRHVKKKQLSEYLPAHMLKKDKKTKS 538 (654)
Q Consensus 505 ~~~~--m~i~v~~vkr~~L~~~V~~~~lkk~r~~~~ 538 (654)
+..| |.+++.|+||++|+.+++++.+++.|+.+.
T Consensus 467 ~~~g~~~~~~~~~~krr~l~~~~~~~~l~~~k~~~~ 502 (562)
T KOG2245|consen 467 IKAGCDVEIDFGHVKRRSLIQTITKEFLRLCKQYKK 502 (562)
T ss_pred eecccccccccccccccccccccCHHHhhHHHhhcc
Confidence 9999 777888999999999999999998886543
No 2
>PTZ00418 Poly(A) polymerase; Provisional
Probab=100.00 E-value=1.3e-135 Score=1128.59 Aligned_cols=485 Identities=46% Similarity=0.798 Sum_probs=459.4
Q ss_pred CCCccccccccccCCCCChHhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccC
Q psy18158 24 QAPVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVG 103 (654)
Q Consensus 24 ~~~~~~Gvt~Pis~~~Pt~~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~ 103 (654)
..++.||||+|||+++||++|++.+++|+++|+++|+|||+||.++|++||+.|+++|++|+++++.++|++++++..++
T Consensus 47 ~~~~~~Gvt~Pis~~~Pt~~d~~~s~~L~~~L~~~~~fes~ee~~kR~~vL~~L~~iv~~wv~~vs~~k~~~~~~~~~~~ 126 (593)
T PTZ00418 47 ECALSYGVTDPISLNGPTEEDLKLSNELINLLKSYNLYETEEGKKKRERVLGSLNKLVREFVVEASIEQGINEEEASQIS 126 (593)
T ss_pred CcccccCCCCCccCCCCChHHHhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHhcCC
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEeecc
Q psy18158 104 GKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLA 183 (654)
Q Consensus 104 ~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~ 183 (654)
++|+|||||+||||+|+||||+|||+|+|++|++||..|+++|+++++|++|++|++|+||||||+++||+|||+||+++
T Consensus 127 g~I~tfGSYrLGV~~pgSDID~L~V~P~~vtredFF~~f~~~L~~~~~V~eL~~V~~A~VPiIk~~~~GI~iDL~fa~l~ 206 (593)
T PTZ00418 127 GKLFTFGSYRLGVVAPGSDIDTLCLAPRHITRESFFSDFYAKLQQDPNITKLQPVPDAYTPVIKFVYDGIDIDLLFANLP 206 (593)
T ss_pred eEEEEeccccccCCCCCCcccEEEECCCCCCHHHHHHHHHHHHhcCCCcceeeccCccccCeEEEEECCEEEeeeecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccchh-hhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHH
Q psy18158 184 LKEIPDDMDLRDDM-LLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLV 262 (654)
Q Consensus 184 ~~~iP~~l~l~~d~-lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLV 262 (654)
++.+|+++++.+|+ +|++||++++|||||+||+|+|+++||+.+.||.+|||||+|||+||||+|++||||||+|||||
T Consensus 207 ~~~vp~~~~~l~d~~lL~nlde~s~rSLNG~Rvtd~Il~lVPn~~~Fr~aLR~IKlWAkrRGIYsNv~GflGGV~wAILv 286 (593)
T PTZ00418 207 LPTIPDCLNSLDDDYILRNVDEKTVRSLNGCRVADLILASVPNKDYFRTTLRFIKLWAKRRGIYSNVLGYLGGVSWAILT 286 (593)
T ss_pred CCCCCccccccCchhhhhcCCHHHhhhhccHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHH
Confidence 99999999988776 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHhcCCCCCceeecCCCC-----CCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCc
Q psy18158 263 ARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDN-----VNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFN 337 (654)
Q Consensus 263 a~icQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~L~~~~~-----~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~n 337 (654)
||+||+|||+++++||.+||.+|++|+||+||+|+++++ |.++++||||+.|++||+|+||||||+||+||+|||
T Consensus 287 ARVCQLyPna~~s~Lv~~FF~iys~W~Wp~PV~L~~i~~~~~~~g~~~~~VWdPr~~~~dr~h~MPIITPayP~mNst~n 366 (593)
T PTZ00418 287 ARICQLYPNFAPSQLIHKFFRVYSIWNWKNPVLLCKIKEVPNIPGLMNFKVWDPRVNPQDRAHLMPIITPAFPSMNSTHN 366 (593)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhhcCCCCCCeEcccccccccCCcccCCcccCCCCCcccccccCCeecCCCCCcccccc
Confidence 999999999999999999999999999999999998764 678899999999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHHHHHHHHHhhc-CCCCchhhcCCCcchhhccceeEEEEEeCChhhhhhhHhHHHHHHHHHHHhhhc
Q psy18158 338 VSISTRTIMQEEFKQGKTISEDIYN-GKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLER 416 (654)
Q Consensus 338 Vs~sTl~~I~~Ef~Ra~~i~~~i~~-~~~~W~~Lfe~~~Ff~~Yk~yl~I~v~a~~~e~~~~w~G~VESrlR~Lv~~LE~ 416 (654)
||.+|+++|++||+||.+||++|.. ++.+|++||++++||.+|+|||+|++.|.+++++.+|.||||||||.|+.+||+
T Consensus 367 Vt~sT~~vI~~Ef~Ra~~i~~~i~~~~~~~W~~Lfep~~Ff~~Yk~yl~V~v~a~~~~~~~~w~G~VESRlR~Lv~~LE~ 446 (593)
T PTZ00418 367 VTYTTKRVITEEFKRAHEIIKYIEKNSENTWTNVLEPLDFFTSYKHFLVIQVYATNEHVHNKWEGWIESKIRFLIKKLET 446 (593)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHcCCcchhhhcceEEEEEEEECCHHHhhhhhhHHHHHHHHHHHHhhc
Confidence 9999999999999999999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeccCCCcccCCCccccCCCCCCccccccccCCCCCCCCCCcceeeEEEEeEEeccc----ceecchhhhHHHHH
Q psy18158 417 NPHINLAHVNPECYTDTTGVIANGSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFIAA----NVILNLTYDIQHFT 492 (654)
Q Consensus 417 ~~~i~~a~~~P~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fIGL~~~~~----~~~~DL~~~i~~F~ 492 (654)
.+.|. +|+||+.|...+ . ..+|+++|||||+++.. ..++||+.++++|+
T Consensus 447 ~~~i~-~~p~P~~f~~~~-----~---------------------~~~~~~~ffIGL~~~~~~~~~~~~~Dl~~~~~~F~ 499 (593)
T PTZ00418 447 LNNLK-IRPYPKFFKYQD-----D---------------------GWDYASSFFIGLVFFSKNVYNNSTFDLRYAIRDFV 499 (593)
T ss_pred cCCce-EeecCcccccCC-----C---------------------CceeEEEEEEeEeeccCCCCCCceEecHHHHHHHH
Confidence 88764 579999998532 0 34699999999999542 34899999999999
Q ss_pred HHHHHhhhhccccCCCcEEEEEEecccccccccccccccccccC
Q psy18158 493 NAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKKT 536 (654)
Q Consensus 493 ~~v~~~~~~~~~~~~~m~i~v~~vkr~~L~~~V~~~~lkk~r~~ 536 (654)
+.|++|.. +..+.++|||+|+|||+++||+||++++-+|.++.
T Consensus 500 ~~i~~~~~-~~~~~~~~~i~v~~Vk~~~Lp~~v~~~~~~~~~~~ 542 (593)
T PTZ00418 500 DIINNWPE-MEKYPDQIDINIKYLKKSQLPAFVLSQTPEEPVKT 542 (593)
T ss_pred HHHHhhhh-cccCCCCceEEEEEeehHhCCHhhccCCCcCCCcc
Confidence 99999974 33467889999999999999999999876665543
No 3
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]
Probab=100.00 E-value=7.1e-126 Score=983.82 Aligned_cols=499 Identities=41% Similarity=0.728 Sum_probs=462.9
Q ss_pred CccccccccccCCCCChHhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcE
Q psy18158 26 PVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGK 105 (654)
Q Consensus 26 ~~~~Gvt~Pis~~~Pt~~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~k 105 (654)
++.||+|+|||+.+.|+++.+++.+|+++|++.|.||++.|.++|.+||++|+.++++++.+++..+|+.+.++..+||+
T Consensus 4 ~k~~GiTgP~ST~~aTe~En~Ln~~li~eLk~~g~FE~~~E~~~Rv~VL~~Lq~~~~eFV~~vs~~K~m~dgmar~aGGK 83 (552)
T COG5186 4 KKKYGITGPLSTREATEEENRLNGELIKELKERGFFEDDKEGQTRVRVLGKLQFMVREFVARVSRNKGMGDGMARPAGGK 83 (552)
T ss_pred cccccccCCcccccccHHHhhhhHHHHHHHHHcCCcCCchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCce
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEeecccc
Q psy18158 106 IYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALK 185 (654)
Q Consensus 106 l~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~ 185 (654)
|++|||||||||+||||||++||.|+|++|+|||+.|..+|++.++++++.+|++|+|||||++|.||+|||.||++..+
T Consensus 84 IFTyGSYRLGVhgpGsDIDtLvvVPkHVsR~dFFt~f~~~Lrer~ei~eva~vpDAfVPIIK~KF~GIsIDLifARLs~P 163 (552)
T COG5186 84 IFTYGSYRLGVHGPGSDIDTLVVVPKHVSRSDFFTHFYEELRERPEIEEVAKVPDAFVPIIKLKFQGISIDLIFARLSIP 163 (552)
T ss_pred eeeecceeeeccCCCCCcceEEEecccccHHHHHHHHHHHhccCcchhhhccCCcccceeEEEEecCccceeeeeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHHH
Q psy18158 186 EIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARI 265 (654)
Q Consensus 186 ~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~i 265 (654)
.+|..|+|.|+++|++|||+|++||||.||+|+||.+||+...|+.+||+||+||+||.||.|.+||.||++|+|||||+
T Consensus 164 ~Vp~~l~Lsd~nLLk~~dEkcilsLNGtRVTDeiL~LVP~~~vF~~ALRaIK~WAqRRavYaN~~GfpGGVAwam~VARi 243 (552)
T COG5186 164 VVPDGLNLSDDNLLKSMDEKCILSLNGTRVTDEILNLVPSVKVFHSALRAIKYWAQRRAVYANPYGFPGGVAWAMCVARI 243 (552)
T ss_pred cCCCcccccchhhhhcchHHHHHhhcCceehHHHHHhCCchHHHHHHHHHHHHHHHhhhhhccccCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCChHHHHHHHHHHHhcCCCCCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHHH
Q psy18158 266 CQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTI 345 (654)
Q Consensus 266 cQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~ 345 (654)
||||||++...++.+||+++++|+||+||+|+++++|+++.++|||+.+++|++|+||||||+||+||.|||||.||..+
T Consensus 244 CQLYPNA~S~vIv~kFF~ils~WnWPqPviLkPieDgplqvrvWnPKvYpsDk~HRMPvITPAYPSMCATHNit~STq~v 323 (552)
T COG5186 244 CQLYPNASSFVIVCKFFEILSSWNWPQPVILKPIEDGPLQVRVWNPKVYPSDKYHRMPVITPAYPSMCATHNITNSTQHV 323 (552)
T ss_pred HhhccCcchHhHHHHHHHHHHhcCCCCCeEeeeccCCCeeEEeeCCccCcccccccCccccCCchhhhhhccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhcCCCcchhhccceeEEEEEeCChhhhhhhHhHHHHHHHHHHHhhhcCCCcceecc
Q psy18158 346 MQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHV 425 (654)
Q Consensus 346 I~~Ef~Ra~~i~~~i~~~~~~W~~Lfe~~~Ff~~Yk~yl~I~v~a~~~e~~~~w~G~VESrlR~Lv~~LE~~~~i~~a~~ 425 (654)
|..||-||.+|+++|+.+..+|..||+..|||.+||+||.|++.+.++|++.+|.|+||||+|.|+.+||-...|.+|||
T Consensus 324 Il~EfvRa~~I~~di~~n~~~w~~lFek~DFF~RYk~yleitA~s~~~E~~lKW~GlvESKiR~Lv~klE~vd~i~~AhP 403 (552)
T COG5186 324 ILMEFVRAHKILSDIERNALDWRRLFEKSDFFSRYKLYLEITAMSSCEEDFLKWEGLVESKIRILVSKLEAVDDILYAHP 403 (552)
T ss_pred HHHHHHHHHHhhhhHhhccccHHHHHHhhhHHHHHhHhhhhhhhhcchhhhhhhhhHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCC-----cc---ccCCCC--------CC--ccccccccCCCCCCCCCCcceeeEEEEeEEec--ccceecchh
Q psy18158 426 NPECYTDTT-----GV---IANGSG--------SP--EITAEGKEEGGENTSPPVSGVASMWFIGLDFI--AANVILNLT 485 (654)
Q Consensus 426 ~P~~f~~~~-----~~---~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~fIGL~~~--~~~~~~DL~ 485 (654)
||+.|.... .. +..+-+ +. ..+++-.|+..-.+ ....|++.+||||++. .+++++|+.
T Consensus 404 F~K~F~~~y~c~~Ee~~e~i~~~~~~~~a~~s~d~~kl~~d~~~eees~~d--~~k~y~tt~yIgld~~~~~~~kkvdi~ 481 (552)
T COG5186 404 FPKAFRKVYNCVAEESIEKIGSGVTLEVAYESTDHEKLANDTVPEEESMED--GMKVYCTTFYIGLDVIPVKPGKKVDIE 481 (552)
T ss_pred CChhhhhhcCCccHHHHHHHhcccceeehhhccchhhhccccCchhhhhcc--ccceeeeEEEEEEEeeecCCCceeeee
Confidence 999998432 00 010100 00 01222221110000 1346999999999984 457889999
Q ss_pred hhHHHHHHHHHHhhhhccccCCCcEEEEEEeccccccccccccc
Q psy18158 486 YDIQHFTNAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHM 529 (654)
Q Consensus 486 ~~i~~F~~~v~~~~~~~~~~~~~m~i~v~~vkr~~L~~~V~~~~ 529 (654)
.++++|.+.|++|.. +...+|.|.++.+|+++||+=|+-.+
T Consensus 482 ~p~~EF~elcr~~d~---gd~~~mni~v~~~K~~dlpdeVF~~g 522 (552)
T COG5186 482 QPVKEFIELCREYDE---GDASGMNIEVNSLKRKDLPDEVFYPG 522 (552)
T ss_pred ccHHHHHHHHHHhhc---cccceeeeehhhccccCCchhhcCCC
Confidence 999999999999853 44789999999999999999887543
No 4
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase which specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analog at 2.5 A resolutio has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta-sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different.; GO: 0004652 polynucleotide adenylyltransferase activity, 0006351 transcription, DNA-dependent; PDB: 1Q79_A 1Q78_A 1F5A_A 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A.
Probab=100.00 E-value=3.7e-74 Score=588.92 Aligned_cols=254 Identities=57% Similarity=1.005 Sum_probs=204.6
Q ss_pred CccccccccccCCCCChHhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcE
Q psy18158 26 PVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGK 105 (654)
Q Consensus 26 ~~~~Gvt~Pis~~~Pt~~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~k 105 (654)
+++||||+|||+++||+.|++.+++|+++|++++++||+||.++|++||++|+++|++|+++
T Consensus 1 ~~~~Gvt~PIS~~~Pt~~Dl~~s~~L~~~l~~~~~~es~ee~~~R~~vl~~L~~iv~~wv~~------------------ 62 (254)
T PF04928_consen 1 QKQYGVTKPISLAPPTEKDLKRSASLEEFLKDYGLFESEEEEQKREEVLRKLQQIVKEWVKQ------------------ 62 (254)
T ss_dssp -GGGSTT--S------HHHHHHHHHHHHHHHHCT-S--HHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred CCccCCCCCccCCCCChhhHHhHHHHHHHHHHcCCCCChHHHhHHHHHHHHHHHHHHHHHHh------------------
Confidence 37899999999999999999999999999999999999999999999999999999999963
Q ss_pred EEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEeecccc
Q psy18158 106 IYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALK 185 (654)
Q Consensus 106 l~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~ 185 (654)
...
T Consensus 63 -----------------------------------------------------------------------------~~~ 65 (254)
T PF04928_consen 63 -----------------------------------------------------------------------------ALP 65 (254)
T ss_dssp -----------------------------------------------------------------------------SSS
T ss_pred -----------------------------------------------------------------------------hhc
Confidence 567
Q ss_pred CCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHHH
Q psy18158 186 EIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARI 265 (654)
Q Consensus 186 ~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~i 265 (654)
++|+++++.+|++|++||++|++||||+||+++|+++||+.+.||.++||||+|||+||||+|++||||||+||||||++
T Consensus 66 ~~p~~l~~~~~~~l~~ld~~s~~sLnG~Rv~~~il~~Vp~~~~Fr~~lR~IK~WAk~RGIYsn~~GylGGI~waILvArv 145 (254)
T PF04928_consen 66 RVPEDLDLLDDDPLRNLDEASVRSLNGVRVTDYILRLVPNQETFRTALRFIKLWAKRRGIYSNVFGYLGGIHWAILVARV 145 (254)
T ss_dssp SB-TT--TT-GGGGTT--HHHHHHHHHHHHHHHHHCTSS-HHHHHHHHHHHHHHHHHTT-B-CCCTSB-HHHHHHHHHHH
T ss_pred CCCcccccCCchhhhCCCHhhccCcccccHHHHHHHHCCCHHHHHHHHHHHHHHHHHccccchhhccchHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCChHHHHHHHHHHHhcCCCCCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHHH
Q psy18158 266 CQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTI 345 (654)
Q Consensus 266 cQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~ 345 (654)
||+|||+++++||.+||.+|++|+|++||+|+.+..+.+++++|+|+.+.+|+.|+|||+||+||++|+|+|||.+|+++
T Consensus 146 cql~Pn~~~~~ll~~FF~~ys~W~W~~PV~l~~~~~~~~~~~~w~p~~~~~~~~~~MpIiTP~yP~~Nst~nVt~st~~~ 225 (254)
T PF04928_consen 146 CQLYPNASPSTLLSRFFQIYSQWDWPNPVVLDPIEDGPLGFKVWNPRLYPRDRRHLMPIITPAYPSMNSTYNVTRSTLRI 225 (254)
T ss_dssp HHHSTT--HHHHHHHHHHHHHCS-TTS-EESS-----SSSCGS--TTT-HHHHC-SS-EE-SSSS--BTTTT--HHHHHH
T ss_pred HHHCccccccchHHHHHHHhcCCCCCCceeecccccCcccccCCCCCCCCCCcccceeEccCCCCccccccccCHHHHHH
Confidence 99999999999999999999999999999999999888999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhcCCC
Q psy18158 346 MQEEFKQGKTISEDIYNGKTMWDKLFETP 374 (654)
Q Consensus 346 I~~Ef~Ra~~i~~~i~~~~~~W~~Lfe~~ 374 (654)
|++||+||+++++++..++.+|++||+|+
T Consensus 226 i~~Ef~ra~~i~~~~~~~~~~W~~L~e~~ 254 (254)
T PF04928_consen 226 IREEFQRAHEILSEILKGGASWSDLFEPH 254 (254)
T ss_dssp HHHHHHHHHHHHHHHHTTSS-HHHCT---
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHcCCC
Confidence 99999999999999999999999999985
No 5
>PF04926 PAP_RNA-bind: Poly(A) polymerase predicted RNA binding domain; InterPro: IPR007010 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase that specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analogue at 2.5 A resolution has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The C-terminal domain unexpectedly folds into a compact domain reminiscent of the RNA-recognition motif fold. The three invariant aspartates of the catalytic triad ligate two of the three active site metals. One of these metals also contacts the adenine ring. Furthermore, conserved, catalytically important residues contact the nucleotide. These contacts, taken together with metal coordination of the adenine base, provide a structural basis for ATP selection by poly(A) polymerase. ; GO: 0003723 RNA binding, 0004652 polynucleotide adenylyltransferase activity, 0043631 RNA polyadenylation, 0005634 nucleus; PDB: 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A 1Q79_A 1Q78_A 1F5A_A.
Probab=99.97 E-value=3.9e-32 Score=259.75 Aligned_cols=152 Identities=36% Similarity=0.612 Sum_probs=110.8
Q ss_pred cchhhccceeEEEEEeCChhhhhhhHhHHHHHHHHHHHhhhcCCCcceeccCCCcccCCCccccCCCCCCccccccccCC
Q psy18158 375 NFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEITAEGKEEG 454 (654)
Q Consensus 375 ~Ff~~Yk~yl~I~v~a~~~e~~~~w~G~VESrlR~Lv~~LE~~~~i~~a~~~P~~f~~~~~~~~~~~~~~~~~~~~~~~~ 454 (654)
+||.+|||||+|+|+|.+++++.+|.||||||||.||.+||+++.|.+|||||+.|.........+.. .....+..
T Consensus 1 ~FF~~Yk~yl~I~~~a~~~~~~~~W~G~VESrlR~Lv~~LE~~~~i~~ahp~pk~f~~~~~~~~~~~~----~~~~~~~~ 76 (157)
T PF04926_consen 1 DFFSRYKHYLQIDVSAKNEEDHRKWSGWVESRLRHLVQKLERNPGIKLAHPFPKRFERVYECSEQADE----NNDEEEEE 76 (157)
T ss_dssp -HHHH-SEEEEEEEEECSHHHHHHHHHHHHCCHHHHHHHHHTSTTEEEEEE-SS-EEEEEE-EBECTT----CTTSHHCH
T ss_pred ChhHhCceeEEEEEEeCCHHHHHHhhhHHHHHHHHHHHHHccCCCeeEecCCCCcccccccccccccc----cccccccc
Confidence 69999999999999999999999999999999999999999999999999999999833211100000 00000000
Q ss_pred CCCCCCCCcceeeEEEEeEEecccc-----eecchhhhHHHHHHHHHHhhhhccccCCCcEEEEEEeccccccccccccc
Q psy18158 455 GENTSPPVSGVASMWFIGLDFIAAN-----VILNLTYDIQHFTNAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHM 529 (654)
Q Consensus 455 ~~~~~~~~~~~~~~~fIGL~~~~~~-----~~~DL~~~i~~F~~~v~~~~~~~~~~~~~m~i~v~~vkr~~L~~~V~~~~ 529 (654)
.....|+++|||||++.... +++||+.+|++|++.|++|+.+ +++.++|+|+|+||||++||+||++++
T Consensus 77 -----~~~~~~~~~~fIGL~~~~~~~~~~~~~~dL~~~i~~F~~~v~~~~~~-~~~~~~m~i~i~~vk~~~Lp~~v~~~~ 150 (157)
T PF04926_consen 77 -----DPENEYTSSFFIGLEFDSKESNEGSKKLDLTYAIQEFKDLVRNWEKY-YYDEEGMDISISHVKRSQLPDFVFEEG 150 (157)
T ss_dssp -----CTSEEEEEEEEEEEEE--SSSS---S-EE-HHHHHHHHHHHHCCCCT-TC-TTTEEEEEEEEEHHHHGGGGS-TT
T ss_pred -----CCCceeEEEEEEEEEECCCCccccceEEehHHHHHHHHHHHHhhhcc-ccCCCccEEEEEEechHHCChhhhccc
Confidence 12568999999999995432 4799999999999999998753 356899999999999999999999999
Q ss_pred ccccccC
Q psy18158 530 LKKDKKT 536 (654)
Q Consensus 530 lkk~r~~ 536 (654)
.+|.||+
T Consensus 151 ~~r~~k~ 157 (157)
T PF04926_consen 151 EKRPKKS 157 (157)
T ss_dssp S------
T ss_pred CcCCCCC
Confidence 9988873
No 6
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.2e-30 Score=282.92 Aligned_cols=265 Identities=21% Similarity=0.267 Sum_probs=211.8
Q ss_pred HhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCc
Q psy18158 43 LDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGAD 122 (654)
Q Consensus 43 ~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SD 122 (654)
.....+.+|.++.. .+.|+.+|.++|...|++|++++++-+ | ++.+++|||+.+|+++|+||
T Consensus 53 ~~~~lt~el~~~y~--~I~ps~eEl~~R~~~leklr~~lk~~~---------p-------da~l~vFGS~~t~L~l~~SD 114 (482)
T COG5260 53 ESDELTSELLEFYD--YIAPSDEELKRRKALLEKLRTLLKKEF---------P-------DADLKVFGSTETGLALPKSD 114 (482)
T ss_pred hHHHHHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHHHHhC---------C-------ccceeEecccccccccCccc
Confidence 34456666666665 578999999999999999999998522 2 46999999999999999999
Q ss_pred eeEEEecCCCCChhhH-HHHHHHHHhcCCCccceEecccCcccEEEEEE--cCeeeeEEEeeccccCCCCcccccchhhh
Q psy18158 123 IDALCVAPRHVDRADY-FSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNF--DGIEIDMLFARLALKEIPDDMDLRDDMLL 199 (654)
Q Consensus 123 ID~l~v~p~~vsr~~f-f~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~--~GI~iDLsfa~l~~~~iP~~l~l~~d~lL 199 (654)
||+|++.+.+...++- -..++..|.......++.+|.+|+||||||.. .|+.|||+|++.
T Consensus 115 iDl~I~s~~~~~~et~~~~~l~~~l~~~~~~~~~~~v~tarVPIIKl~d~~s~l~~Disfn~~----------------- 177 (482)
T COG5260 115 IDLCIISDPRGYKETRNAGSLASHLFKKNLAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNT----------------- 177 (482)
T ss_pred ccEEEecCCccccccccHHHHHHHHHHhccCeeeEEEEecccceEEEecCccceEEEeecCch-----------------
Confidence 9999999765544311 11566666666777889999999999999998 499999999984
Q ss_pred hchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHHHHhhCCC--------
Q psy18158 200 KNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPN-------- 271 (654)
Q Consensus 200 ~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~icQl~Pn-------- 271 (654)
||++.+..+++++-..+++|+++.+||+||++|.++++..|+|+||++.+||..++|++|.
T Consensus 178 -----------~~~~~akl~~~~~~~~P~lrpLvliIKhwl~~R~ln~~~~GtL~sy~i~cmV~sfLq~~~~~~~~~~~~ 246 (482)
T COG5260 178 -----------NGIVNAKLIRSYLKEDPRLRPLVLIIKHWLKRRALNDVATGTLSSYTISCMVLSFLQMHPPFLFFDNGL 246 (482)
T ss_pred -----------hHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHhhcccccCcchhhhhHHHHHHHHHhCCccccccccc
Confidence 6888999999999999999999999999999999999999999999999999999999982
Q ss_pred ----------CChHHHHHHHHHHHh-cCCCCCceeecCCCCC--CCCCcccCCCCCCCCCCCceeeeCCC-CCCCCcCCc
Q psy18158 272 ----------AAASTLVCKFFLVFS-QWKWPQPVLLKKPDNV--NLGFPVWDPRVNVADRYHLMPIITPA-YPQQNSTFN 337 (654)
Q Consensus 272 ----------~s~~~LL~~FF~~Ys-~wdW~~pV~L~~~~~~--~l~~~vWdp~~~~~dr~~~MpIitP~-~P~~Nsa~n 337 (654)
..++.|+.+||++|+ .|+|..-++.....+- ....+.|--..+ ...++|++|. ++..++ .
T Consensus 247 ~~~l~~~~~~~~lgvLf~dFf~~yG~~f~Y~~~~~si~~g~~~~~K~e~g~~~~~~----p~~LsiqdP~td~n~~~--~ 320 (482)
T COG5260 247 LSPLKYNKNIDNLGVLFDDFFELYGKSFNYSLVVLSINSGDFYLPKYEKGWLKPSK----PNSLSIQDPGTDRNNDI--S 320 (482)
T ss_pred cchhhccccccccchHHHHHHHHhccccChhheEEEecCCceeeehhhcccccccC----CCcEeecCCCCCccccc--c
Confidence 258899999999999 4999876543322211 111234532211 2679999999 554444 3
Q ss_pred cChhhHHHHHHHHHHHHHHHHH
Q psy18158 338 VSISTRTIMQEEFKQGKTISED 359 (654)
Q Consensus 338 Vs~sTl~~I~~Ef~Ra~~i~~~ 359 (654)
...-+++.|+.+|.+|.+++.+
T Consensus 321 a~s~~ik~i~~~F~~aF~lls~ 342 (482)
T COG5260 321 AVSFNIKDIKAAFIRAFELLSN 342 (482)
T ss_pred cccchHHHHHHHHHHHHHHHhh
Confidence 3556889999999999999765
No 7
>KOG1906|consensus
Probab=99.96 E-value=2.2e-28 Score=270.27 Aligned_cols=274 Identities=20% Similarity=0.278 Sum_probs=220.1
Q ss_pred cCCCC-ChHhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeee
Q psy18158 36 NLSPP-NQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRL 114 (654)
Q Consensus 36 s~~~P-t~~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~l 114 (654)
..-.| .+.-..++++++.+++ .+.||.+|.+.|.+++++++..|++ . . ..++|++||||.+
T Consensus 51 ~~~~~~~~~s~~l~~eI~~fv~--~l~pt~~e~~~R~~~~~~i~~~v~~-~--------~-------~~a~v~~FGS~~t 112 (514)
T KOG1906|consen 51 CHSSPSNLVSERLRNEILDFVQ--YLIPTPEEIEVRSELVEKIRDVVKQ-K--------W-------PDASVYVFGSVPT 112 (514)
T ss_pred eeeccCchhHHHHHHHHHHHHH--HhcCCchHHHHHHHHHHHHHHHHHH-h--------c-------ccceeEEeeeeec
Confidence 33345 6677778888998887 5889999999999999999999883 1 1 2589999999999
Q ss_pred CCCCCCCceeEEEecCCCCChhhHHHHHHHHHhc--CCCccceEecccCcccEEEEEE--cCeeeeEEEeeccccCCCCc
Q psy18158 115 GVHHKGADIDALCVAPRHVDRADYFSSFFEKLKT--VDEVTDLRAVEEAFVPVIKMNF--DGIEIDMLFARLALKEIPDD 190 (654)
Q Consensus 115 Gv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~--~~~v~~l~~I~~A~VPIIKf~~--~GI~iDLsfa~l~~~~iP~~ 190 (654)
|+++|+||||+++..+....+++....+..++.. ...-..+..|..|+||||||+. .+|.|||+|++.
T Consensus 113 glyLP~sDIDl~v~~~~~~~~e~~~~~~~l~~~~e~~~~~~~v~~v~karvpiik~~d~~s~i~vDISFn~~-------- 184 (514)
T KOG1906|consen 113 GLYLPDSDIDLVVLSKFLNDKEDRAVKLELALELEEDNSAFHVKVVQKARVPIIKFKDPVSNIHVDISFNQT-------- 184 (514)
T ss_pred cccccccceEEEEecccccCchhhHHHHHHHHhhhhccccceEEEeeeeeeeeEEeecCccceEEEeeeccc--------
Confidence 9999999999999999777777776666555554 3344568899999999999997 699999999984
Q ss_pred ccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHHHHhhCC
Q psy18158 191 MDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYP 270 (654)
Q Consensus 191 l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~icQl~P 270 (654)
|||+.++.|..++-+.+.+|.++.++|.|...|++++...|.+++|++++||..++|++|
T Consensus 185 --------------------~G~~aa~~i~~~~~~~p~~~~lvlvlk~fl~~r~ln~v~tGgisSyal~~Lv~~fl~l~~ 244 (514)
T KOG1906|consen 185 --------------------NGVKAAKFIKDFLRDHPFLRSLVLVLKQFLYERRLNGVHTGGISSYALELLVLSFLQLHP 244 (514)
T ss_pred --------------------CchhHHHHHHHHHhcCccchhHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHhhcc
Confidence 799999999999999999999999999999999999999999999999999999999998
Q ss_pred CC---------ChHHHHHHHHHHHh-cCCCCC-ceeecCCCCCCC-CCcccCCCCCCCCCCCceeeeCCCCCCCCcCCcc
Q psy18158 271 NA---------AASTLVCKFFLVFS-QWKWPQ-PVLLKKPDNVNL-GFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNV 338 (654)
Q Consensus 271 n~---------s~~~LL~~FF~~Ys-~wdW~~-pV~L~~~~~~~l-~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nV 338 (654)
.. .++.|+.+||++|+ +|++.. -|.+..+..-.. ....|- .+...+...+.|+||..|..+.++
T Consensus 245 ~~~s~~~~~~~~~~vll~~f~e~yG~~f~~~k~~i~~~~~g~~~~~~~~~~~--~~~~~~~~~LsieDP~~P~ndigr-- 320 (514)
T KOG1906|consen 245 RSKSGRLAVLKNLGVLLIKFFELYGRNFGYDKLGISLSLGGEYVSKELTGFF--NNSLERPGSLSIEDPVDPTNDIGR-- 320 (514)
T ss_pred cccCCccchhcccchHHHHHHHHhccccCchhhceeccCCcccccHHhhhhh--cccccCCCccccCCCCCccccccc--
Confidence 74 36789999999999 577765 233332221100 111121 122345567999999999887774
Q ss_pred ChhhHHHHHHHHHHHHHHHHH
Q psy18158 339 SISTRTIMQEEFKQGKTISED 359 (654)
Q Consensus 339 s~sTl~~I~~Ef~Ra~~i~~~ 359 (654)
+...+..|+.+|..|+.++..
T Consensus 321 ~s~~~~~v~~~F~~af~~l~~ 341 (514)
T KOG1906|consen 321 SSFNFSQVKGAFAYAFKVLTN 341 (514)
T ss_pred ccccHHHHHHHHHHHHHHHhh
Confidence 335678899999999988643
No 8
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=99.80 E-value=5.7e-19 Score=159.28 Aligned_cols=97 Identities=43% Similarity=0.779 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCceeEEEecCCC-CChhhHHHHHHHHHh
Q psy18158 69 SRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRH-VDRADYFSSFFEKLK 147 (654)
Q Consensus 69 ~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~-vsr~~ff~~l~~~L~ 147 (654)
.|++++++|++++++|. | ++++++|||+++|+++|+||||+++..|.. ....+++..+.+.|+
T Consensus 1 ~r~~i~~~l~~~i~~~~---------~-------~~~v~~fGS~~~g~~~~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~ 64 (114)
T cd05402 1 KREEVLDRLQELIKEWF---------P-------GAKLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLAKLLK 64 (114)
T ss_pred CHHHHHHHHHHHHHHHC---------C-------CCEEEEecccccCCCCCCCCeeEEEEeCCCCccHHHHHHHHHHHHH
Confidence 38899999999999873 2 489999999999999999999999999976 567799999999999
Q ss_pred cCCCccceEecccCcccEEEEEEc--CeeeeEEEee
Q psy18158 148 TVDEVTDLRAVEEAFVPVIKMNFD--GIEIDMLFAR 181 (654)
Q Consensus 148 ~~~~v~~l~~I~~A~VPIIKf~~~--GI~iDLsfa~ 181 (654)
+...+.++..|.+|+||||||.+. |++|||+|++
T Consensus 65 ~~~~~~~~~~i~~ArVPiik~~~~~~~i~~Dis~~~ 100 (114)
T cd05402 65 KSGEVVEVEPIINARVPIIKFVDKPTGIEVDISFNN 100 (114)
T ss_pred hCCCceeeEEeccCCCCEEEEEEcCCCeEEEEEccc
Confidence 988889999999999999999998 9999999997
No 9
>KOG2277|consensus
Probab=99.70 E-value=4.1e-16 Score=176.79 Aligned_cols=251 Identities=19% Similarity=0.300 Sum_probs=186.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCceeEEEecCCC-CC----
Q psy18158 60 VSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRH-VD---- 134 (654)
Q Consensus 60 ~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~-vs---- 134 (654)
..+...+...|......++.++..- .|. ....+..|||..+|+....+|+|+++..... .+
T Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~p~-----~~~~~~~~gs~~~~~~~~~~d~d~~~~~~~~~~~~~~~ 190 (596)
T KOG2277|consen 125 FKLPHSDVKTRKLILDKLRALASLL---------FPD-----SILSLYLFGSSDLGLGERSSDLDLCVDFTSSFLSFEKI 190 (596)
T ss_pred cCCCccccchHHHHHHHHHHHHHHh---------cCC-----CcceeeccCcccccccccccCcceeecccccccccchh
Confidence 3455666677777777777766532 222 1223679999999999999999944333322 12
Q ss_pred -hhhHHHHHHHHHhcCCC--ccceEecccCcccEEEEEE--cCeeeeEEEeeccccCCCCcccccchhhhhchhhhhhhc
Q psy18158 135 -RADYFSSFFEKLKTVDE--VTDLRAVEEAFVPVIKMNF--DGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRS 209 (654)
Q Consensus 135 -r~~ff~~l~~~L~~~~~--v~~l~~I~~A~VPIIKf~~--~GI~iDLsfa~l~~~~iP~~l~l~~d~lL~~lD~~s~rS 209 (654)
-...+..+.+++....+ +..++.|..|+|||||+.+ .|+++|+++.+. .
T Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~A~vPiik~~~~~~~~~~d~s~~n~--------~------------------ 244 (596)
T KOG2277|consen 191 KGLEILKLLAKCLASLLEEGVREVQQILSARVPIIKFNDSGSGLECDLSVNNS--------D------------------ 244 (596)
T ss_pred hhHHHHHHHHHHHHhccccccceeeeeeecCCCEEEecCCCCCCceeeeeccc--------h------------------
Confidence 12455667777776543 8899999999999999965 489999999864 1
Q ss_pred cchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccc-hHHHHHHHHHHHhhCCC-----------------
Q psy18158 210 LNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLG-GVSWAMLVARICQLYPN----------------- 271 (654)
Q Consensus 210 LNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LG-Gis~aiLVa~icQl~Pn----------------- 271 (654)
|++.+..+......+.+|+.+...||+||+++++++...|.+. +|++.+||++++|.++.
T Consensus 245 --~~~nS~ll~~~~~~d~r~~~L~~~vk~wa~~~~~~d~~~g~~~s~ysl~lmvi~fLq~~~~~ilp~l~~l~~~~~~~~ 322 (596)
T KOG2277|consen 245 --AILNSQLLRNYSEIDPRVRPLVLLVKHWAKEKGLNDAKPGGLNSSYSLTLMVIHFLQTLSPPILPPLSKLLPESDSND 322 (596)
T ss_pred --hhhhhHHHHHhHhcCCCcchHhHHHHHHHHhccCCCCCCCceeccccHHHHHHHHHHhcCCcCCCchhhhchhccccc
Confidence 2334444444555567999999999999999999999999988 59999999999998632
Q ss_pred --------------------------CChHHHHHHHHHHHh-cCCCCCcee-ecCCCCCCCCCcccCCCCCCCCCCCcee
Q psy18158 272 --------------------------AAASTLVCKFFLVFS-QWKWPQPVL-LKKPDNVNLGFPVWDPRVNVADRYHLMP 323 (654)
Q Consensus 272 --------------------------~s~~~LL~~FF~~Ys-~wdW~~pV~-L~~~~~~~l~~~vWdp~~~~~dr~~~Mp 323 (654)
.+++.|+..||.||+ .|||++-++ ++........ |.. .....+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~yy~~~Fdf~~~~I~~r~~~~l~~~---~~~-----~~~~~l~ 394 (596)
T KOG2277|consen 323 KPVVKKKVLCSFLRVFQRNPSNSQNTGSLGELLLGFFSYYASLFDFRKNAISIRRGRALKRA---KKI-----KSKKFLC 394 (596)
T ss_pred ccchhhhhhhccccccccccccccccchHHHHHHHHHHHHhhhcccccceeeeeeccccccc---chh-----hhcccee
Confidence 135689999999999 799998653 4433221110 111 1124699
Q ss_pred eeCCCCCCCCcCCccChhhHHHHHHHHHHHHHHHHHh
Q psy18158 324 IITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDI 360 (654)
Q Consensus 324 IitP~~P~~Nsa~nVs~sTl~~I~~Ef~Ra~~i~~~i 360 (654)
|++|++...|.+..++.....+|+.+|+....++...
T Consensus 395 i~dp~~~~~n~~~~~~~~~~~~i~~~~~~~~~~~~~~ 431 (596)
T KOG2277|consen 395 IEDPFEVSHNADAGVTLKVLLLIQDEFQESRRVFKDV 431 (596)
T ss_pred eccccccccCccccchHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999998765
No 10
>TIGR03671 cca_archaeal CCA-adding enzyme.
Probab=99.58 E-value=1.2e-12 Score=142.61 Aligned_cols=295 Identities=19% Similarity=0.237 Sum_probs=185.6
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCC-CCceeEEEecC
Q psy18158 52 AECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHK-GADIDALCVAP 130 (654)
Q Consensus 52 ~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p-~SDID~l~v~p 130 (654)
.+.|+ .+-||+||.++-+.+.++|...+++++.+ . +. .++++.|||++-|.|++ +||||++++.|
T Consensus 3 ~~vl~--~i~Ps~eE~~~~~~~~~~l~~~l~~~~~e----~--~~------~~~v~~~GS~ArgT~L~G~sDIDIfi~f~ 68 (408)
T TIGR03671 3 EEVLE--RIKPTEEEREKLKKVADELIARLEEIIEE----L--GV------DAEVVLVGSYARGTWLKGDRDIDIFILFP 68 (408)
T ss_pred HHHhh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHh----c--CC------cceEEEEeeEecCCccCCCCceeEEEEeC
Confidence 34454 46799999999999999999888887653 1 21 37999999999999999 89999999999
Q ss_pred CCCChhhHHHH---HHHHHhcC-CCccceEecccCcccEEEEEEcCeeeeEEEeeccccCCCCcccccch-hhhhchhhh
Q psy18158 131 RHVDRADYFSS---FFEKLKTV-DEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDD-MLLKNLDQK 205 (654)
Q Consensus 131 ~~vsr~~ff~~---l~~~L~~~-~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~iP~~l~l~~d-~lL~~lD~~ 205 (654)
...+++++=.. +...+.+. +.. ....|.=|-++..+.|++|||.=|-- +.+- .+...+|-.
T Consensus 69 ~~~~~e~l~~~gl~i~~~~~~~~~~~----~~~yaeHpYv~~~~~G~~VDiVPcy~----------v~~g~~~~taVDRt 134 (408)
T TIGR03671 69 KDTSREELEEYGLEIGHEVLKRGGNY----EERYAEHPYVSGEIEGFEVDVVPCYK----------VESGEEIISAVDRT 134 (408)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCH----hheeccCceEEEEEccEEEEEEeeEE----------ccCcCeeeccccCc
Confidence 88777654332 22223221 111 14577789999999999999985521 1111 111111111
Q ss_pred hhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcC--cCCccchHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q psy18158 206 CVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSN--VLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFL 283 (654)
Q Consensus 206 s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn--~~G~LGGis~aiLVa~icQl~Pn~s~~~LL~~FF~ 283 (654)
..=+++++...- +.++..+|++|.|+|.-|+|++ +.++++||.+-||++++ .+-..++..+
T Consensus 135 -------p~H~~fv~~rl~--~~~~d~VRLlK~f~k~igvYGsE~~~~GFSGYl~ELLv~~y------G~F~~~l~~a-- 197 (408)
T TIGR03671 135 -------PFHTRYVLERLD--GKLRDDVRLLKQFLKGIGVYGSELKTRGFSGYLCELLVIHY------GSFENVLKAA-- 197 (408)
T ss_pred -------hHHHHHHHHhhh--hhHHHHHHHHHHHHHhCCccchhhccCCccHHHHHHHHHHh------CCHHHHHHHH--
Confidence 012345544442 3488999999999999999964 56889999999999994 2333444433
Q ss_pred HHhcCCCCCceeecCCC-CCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHHHHHHHHHHHHHHHHHhhc
Q psy18158 284 VFSQWKWPQPVLLKKPD-NVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYN 362 (654)
Q Consensus 284 ~Ys~wdW~~pV~L~~~~-~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~I~~Ef~Ra~~i~~~i~~ 362 (654)
++ |..++.+ +++ .+.. .+ ...+.|+||.+|..|+|.++|..++..+...-+++.+
T Consensus 198 --~~--wk~~~~i-d~~~~~~~-------~f-----~~PlvViDPvDp~RNVAaalS~~~~~~fv~aar~fl~------- 253 (408)
T TIGR03671 198 --SK--WKPGVVI-DIEEHGTK-------KF-----DDPLVVIDPVDPKRNVAAALSLENLARFILAARMFLK------- 253 (408)
T ss_pred --Hh--cCCCeEE-ecCccccc-------cC-----CCCEEEeCCCCCcchHHHHcCHHHHHHHHHHHHHHHH-------
Confidence 23 4445655 222 1111 11 2469999999999999999999887766654433321
Q ss_pred CCCCchhhcCCC-----c---chhhcc-ceeEEEEEeCChhhhhhhHhHHHHHHHHHHHhhhcCC
Q psy18158 363 GKTMWDKLFETP-----N---FFTKYR-HYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNP 418 (654)
Q Consensus 363 ~~~~W~~Lfe~~-----~---Ff~~Yk-~yl~I~v~a~~~e~~~~w~G~VESrlR~Lv~~LE~~~ 418 (654)
. +=.++|.|. + -+.+-. +.+.|.....+.-+. ...|-++==.+.|...||+..
T Consensus 254 ~--Ps~~fF~p~~~~~~~~~~~l~~r~t~~~~~~f~~p~~v~D-il~pQl~r~~~~i~~~L~~~g 315 (408)
T TIGR03671 254 N--PSLEFFFPPEIEPEEFLERLERRGTTLLAIVFRTPDVVDD-ILYPQLERSGRSLVKLLEREG 315 (408)
T ss_pred C--CCHHHcCCCCCChHHHHHHHhhcCcEEEEEEeCCCCCCcc-chhHHHHHHHHHHHHHHHHCC
Confidence 1 223455432 1 112222 334444434333232 344666666667777777643
No 11
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional
Probab=99.52 E-value=1.2e-11 Score=136.71 Aligned_cols=298 Identities=18% Similarity=0.217 Sum_probs=183.7
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCC-CCceeEEEecC
Q psy18158 52 AECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHK-GADIDALCVAP 130 (654)
Q Consensus 52 ~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p-~SDID~l~v~p 130 (654)
.+.|+ .+-||+||.++-.++.+.|...+++++.+ .+. .++++.+|||+-|.|++ +||||+.++.|
T Consensus 4 ~evl~--~i~Ps~eE~~~l~~~~~~l~~~L~~~~~~----~~~--------~~~V~l~GS~ArgT~L~GdsDIDIFv~fp 69 (447)
T PRK13300 4 EEVLE--RIKPTEEEREKLKKVAEELIERLEEAIKE----LGL--------DAEVELVGSTARGTWLSGDRDIDIFVLFP 69 (447)
T ss_pred HHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHh----cCC--------ceEEEEEeeecCCcccCCCCceeEEEEeC
Confidence 44454 46799999999999999988888877643 221 27999999999999999 78999999999
Q ss_pred CCCChhhHHHH---HHH-HHhcCCCccceEecccCcccEEEEEEcCeeeeEEEeeccccCCCCcccccch-hhhhchhhh
Q psy18158 131 RHVDRADYFSS---FFE-KLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDD-MLLKNLDQK 205 (654)
Q Consensus 131 ~~vsr~~ff~~---l~~-~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~iP~~l~l~~d-~lL~~lD~~ 205 (654)
...+++++=.. +.. +++....-..++ -|.=|-++..+.|++|||.=|- ++.+. .+...+|-.
T Consensus 70 ~~~~~e~L~~~gl~i~~~~~~~~~~~~~~~---yaeHpyv~~~~~G~~VDiVPcy----------~v~~~~~~~saVDRt 136 (447)
T PRK13300 70 KDTSREELEEKGLEIGKEVAKELLGDYEER---YAEHPYVTGEIDGFEVDIVPCY----------KVESGEEIISAVDRT 136 (447)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhCCcceee---eccCceEEEEECCEEEEEEeeE----------EccCcCcccccccCc
Confidence 87777643322 222 222212222333 4888999999999999998662 11111 111111111
Q ss_pred hhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcC--cCCccchHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q psy18158 206 CVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSN--VLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFL 283 (654)
Q Consensus 206 s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn--~~G~LGGis~aiLVa~icQl~Pn~s~~~LL~~FF~ 283 (654)
..=+++|+...- +.++..+|++|.|.|.-|+|++ +.++++||..-+|++++ .+-..++..+
T Consensus 137 -------p~H~~fv~~rl~--~~~~d~VRLlK~f~k~~gvYGsE~k~~GFSGYl~ELLv~~y------G~F~~~l~~a-- 199 (447)
T PRK13300 137 -------PFHTKYVKERLK--GKLEDEVRLLKQFLKGIGVYGSELKTRGFSGYLCELLIIHY------GSFENVLKAA-- 199 (447)
T ss_pred -------hHHHHHHHHhhh--hhHHHHHHHHHHHHHhCCccchhhccCCccHHHHHHHHHHh------CCHHHHHHHH--
Confidence 012445554442 3489999999999999999964 57889999999999994 3444444443
Q ss_pred HHhcCCCCCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHHHHHHHHHHHHHHHHHhhcC
Q psy18158 284 VFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNG 363 (654)
Q Consensus 284 ~Ys~wdW~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~I~~Ef~Ra~~i~~~i~~~ 363 (654)
++| .-++.|...+.+.. . .-...+.|+||.+|..|+|.++|..++..+. .|++. .+..
T Consensus 200 --~~w--~~~~~I~~~~~~~~--------~---~f~~PlvViDPvDp~RNVAaa~S~~~~~~fv----~aar~---fL~~ 257 (447)
T PRK13300 200 --SKW--KPPVKIDLEKHGKE--------Y---KFDDPLVVIDPVDPNRNVAAALSLENLATFI----LAARE---FLKN 257 (447)
T ss_pred --HhC--CCCceEeccccCcc--------c---cCCCCEEEeCCCCCcchHHHHcCHHHHHHHH----HHHHH---HHhC
Confidence 334 33343322211110 0 1125699999999999999999988866554 33222 2222
Q ss_pred CCCchhhcCCCc--------chhh-ccceeEEEEEeCChhhhhhhHhHHHHHHHHHHHhhhcCC
Q psy18158 364 KTMWDKLFETPN--------FFTK-YRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNP 418 (654)
Q Consensus 364 ~~~W~~Lfe~~~--------Ff~~-Yk~yl~I~v~a~~~e~~~~w~G~VESrlR~Lv~~LE~~~ 418 (654)
+=.+.|.+.+ -+.+ =.+.+.|.....+.-+. ...|-++==.+.|...||+..
T Consensus 258 --Ps~~fF~~~~~~~~~~~~~l~~R~t~~~~v~f~~p~~v~D-il~pQl~r~~~~i~~~L~~~g 318 (447)
T PRK13300 258 --PSLEFFFPSDLSPEEILEELERRGTTVLALEFPRPDIVED-ILYPQLERSLRSIVKLLEREG 318 (447)
T ss_pred --CCHHhcCCCCCChHHHHHHHhhcCceEEEEEeCCCCCCcc-chhHHHHHHHHHHHHHHHHCC
Confidence 2234444433 0111 12444444444333333 334666666667777777643
No 12
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
Probab=99.11 E-value=1.4e-08 Score=122.53 Aligned_cols=288 Identities=18% Similarity=0.240 Sum_probs=186.0
Q ss_pred eeeeCCCC---CCCceeEEEecCCCCC-hhh------------HHHHHHHHH--hcCCCccceE---ecccCcccEEEEE
Q psy18158 111 SYRLGVHH---KGADIDALCVAPRHVD-RAD------------YFSSFFEKL--KTVDEVTDLR---AVEEAFVPVIKMN 169 (654)
Q Consensus 111 Sy~lGv~~---p~SDID~l~v~p~~vs-r~~------------ff~~l~~~L--~~~~~v~~l~---~I~~A~VPIIKf~ 169 (654)
||.++... ++-.||+.+.-|..+- .+| |+..++..| .+...+.++. .-.+.+=||+.+.
T Consensus 1 S~~l~t~~k~~~~~~VDl~v~mP~~~fq~KDyln~RY~~KRA~YLa~iA~~L~~~~~~~~~~v~~~~~~gd~~kPil~l~ 80 (972)
T PF03813_consen 1 SYALKTMIKSKPNLTVDLAVEMPKSLFQEKDYLNYRYFHKRALYLAYIAAHLQKKKSKLFVDVSFEYLNGDPLKPILVLR 80 (972)
T ss_pred CcccccccccCCCCeeEEEEeCChhhcCchhhccchHHHHHHHHHHHHHHHHhhhccccceeEEEEeCCCCCCCCeEEEE
Confidence 56555544 4789999999998433 223 334566777 2333333332 3457788999888
Q ss_pred Ec-----C------eeeeEEEeecc----ccC-CCC------------------cccccchhhhhchhhhhhhccchhhh
Q psy18158 170 FD-----G------IEIDMLFARLA----LKE-IPD------------------DMDLRDDMLLKNLDQKCVRSLNGCRV 215 (654)
Q Consensus 170 ~~-----G------I~iDLsfa~l~----~~~-iP~------------------~l~l~~d~lL~~lD~~s~rSLNG~Rv 215 (654)
-. + +.|-|..+... ..+ .|. .-..+|..+|.++-. ..-
T Consensus 81 p~~~~~~~~~~~~~~~iRi~~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~~~~~pTP~YNssIL~D~~~--------~~~ 152 (972)
T PF03813_consen 81 PKGKKDSDDFSKTKFRIRIIPSIPSDTFPLSRLAPSRNNVRPSWFDEEDSSSLPPTPHYNSSILEDMLM--------EEH 152 (972)
T ss_pred ECCccccccccCCcEEEEEEecCCcccCCHHhcCCCCCccCcCcccccccCCCCCCCcchHHHHHHHhH--------HHH
Confidence 42 2 55555554321 000 111 012345555544321 122
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCc-CCccchHHHHHHHHHHHhh---------CCCCChHHHHHHHHHHH
Q psy18158 216 TDEILRLVPNIENFRLALRTIKLWAKKHGIYSNV-LGYLGGVSWAMLVARICQL---------YPNAAASTLVCKFFLVF 285 (654)
Q Consensus 216 ~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~-~G~LGGis~aiLVa~icQl---------~Pn~s~~~LL~~FF~~Y 285 (654)
..++.+.....+.|+.++.++|.||++||+.+.. .|++||+-|+||+++.+|- .+.++.-+|+..+..+.
T Consensus 153 l~~l~~~~~~~p~f~dA~iLlkvWl~QRg~~~~~~~~Gf~~f~~s~lla~Ll~~g~~~~~~~l~~~mSsyQlFr~~l~fL 232 (972)
T PF03813_consen 153 LKYLHEASKSSPAFRDACILLKVWLRQRGFGSGISQGGFGGFEWSMLLAYLLQGGGRNGKKKLSKSMSSYQLFRAVLQFL 232 (972)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCcccCCCCcchHHHHHHHHHHHcCCCccCCcccCCCCCHHHHHHHHHHHH
Confidence 3445555566799999999999999999998864 4889999999999999876 45578899999999999
Q ss_pred hcCCC-CCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHHHHHHHHHHHHHHHHHhhcCC
Q psy18158 286 SQWKW-PQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGK 364 (654)
Q Consensus 286 s~wdW-~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~I~~Ef~Ra~~i~~~i~~~~ 364 (654)
+..|| .+|+.++..++.......| .+.+....+||.. .+|.+.+++.++++.|+.|-+++.+++++-. .
T Consensus 233 A~~d~~~~~l~~~~~~~~~~~~~~~-------~~~~~~vf~D~sg-~~Nl~~~ms~~s~~~L~~eA~~tl~lL~~~~--~ 302 (972)
T PF03813_consen 233 ATTDLSKKPLFFKSSSDSTESLEEF-------HSAFDPVFVDPSG-GLNLLAKMSPSSYEELQHEAKLTLELLDDSS--D 302 (972)
T ss_pred hccccccCceEEecCCCccchhhhh-------hccCCeEEEeCCC-CEEEEEcCCHHHHHHHHHHHHHHHHHhcccc--c
Confidence 99999 6788876544211111111 1234455666554 5999999999999999999999999987532 3
Q ss_pred CCchhhcCC--CcchhhccceeEEE---EE----eCChhhhhhhHhHHHHHHHHHH-Hhhhc
Q psy18158 365 TMWDKLFET--PNFFTKYRHYLVLI---AS----SVSAEDQLEWCGLIESKVRHLI-GNLER 416 (654)
Q Consensus 365 ~~W~~Lfe~--~~Ff~~Yk~yl~I~---v~----a~~~e~~~~w~G~VESrlR~Lv-~~LE~ 416 (654)
...+.+|-. ..+..+|-+++.|. .. .....+...|...++.++-.|+ ..|..
T Consensus 303 d~F~~lFl~~~~~~~~~fD~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lL~raLgd 364 (972)
T PF03813_consen 303 DGFDSLFLTKVDPPALRFDHVLRISPDSLLSSFSPDESLDFLSFSNYLLRKIYRLLKRALGD 364 (972)
T ss_pred cchhhhhcccCCcccccCCEEEEEcchhhcccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 457777753 46678999999991 11 1122233444445666665544 55653
No 13
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.5e-08 Score=110.44 Aligned_cols=300 Identities=19% Similarity=0.224 Sum_probs=178.8
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCC-CCceeEEE
Q psy18158 49 RELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHK-GADIDALC 127 (654)
Q Consensus 49 ~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p-~SDID~l~ 127 (654)
+.|.+.|+ -+-||+||.++=+.+.+.|...+.+- +++.|+ .+.+...||++=|.|++ +.|||+.|
T Consensus 5 ~~l~evl~--~i~P~~eE~~~~~~~~e~l~~~~~~~----~~e~~~--------~aev~lVGS~AkgTwL~gd~DIDvFi 70 (443)
T COG1746 5 EVLEEVLK--RIKPTEEERKKLKEVAEELRERINEI----IEELGI--------DAEVVLVGSYAKGTWLRGDHDIDVFI 70 (443)
T ss_pred HHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHH----HHhcCC--------cceEEEEeecccCcccCCCcceeEEE
Confidence 34555665 36699999988777777777766554 444544 37899999999999999 79999999
Q ss_pred ecCCCCChhhHHHH----HHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEeeccccCCCCcccccchhhhhchh
Q psy18158 128 VAPRHVDRADYFSS----FFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLD 203 (654)
Q Consensus 128 v~p~~vsr~~ff~~----l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~iP~~l~l~~d~lL~~lD 203 (654)
..|...+++..-.. -...|.+ . + -.+.-|.=|-+.-+++|+++|+.=|--.. -++ .+...+|
T Consensus 71 ~Fp~d~~~eel~~~GL~ig~~~l~~-~---~-~~~~YAeHPYV~g~v~G~eVDvVPCy~v~--~~~-------~~~sAVD 136 (443)
T COG1746 71 AFPKDTSEEELEEKGLEIGREVLKR-G---N-YEERYAEHPYVTGEVDGYEVDVVPCYKVE--DGE-------KIISAVD 136 (443)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhcC-C---c-hhhhhccCCeeEEEEccEEEEEEeccccc--Ccc-------ccccccc
Confidence 99998777644332 2333332 1 1 13557888999999999999998663210 000 0111111
Q ss_pred hhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcC--cCCccchHHHHHHHHHHHhhCCCCChHHHHHHH
Q psy18158 204 QKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSN--VLGYLGGVSWAMLVARICQLYPNAAASTLVCKF 281 (654)
Q Consensus 204 ~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn--~~G~LGGis~aiLVa~icQl~Pn~s~~~LL~~F 281 (654)
-.- -=+.++..-+-. +-+.=+|++|.+.|.-|+|++ +.++++||.--+|++++= +-...|..+
T Consensus 137 RTp-------lHt~yv~e~L~~--~~~deVrLLK~FlK~iGvYGaE~rt~GFSGYL~ELLII~yG------sFe~vl~~a 201 (443)
T COG1746 137 RTP-------LHTRYVEEHLKG--RQKDEVRLLKQFLKGIGVYGAELRTQGFSGYLCELLIIHYG------SFENVLKAA 201 (443)
T ss_pred Ccc-------hhHHHHHHHhcc--cchhHHHHHHHHHhccCccceeeeeccchHHHHHHHHhhhc------cHHHHHHHH
Confidence 100 012333333322 122457899999999999996 468899999999998762 111222221
Q ss_pred HHHHhcCCCCCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHHHHHHHHHHHHHHHHHhh
Q psy18158 282 FLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIY 361 (654)
Q Consensus 282 F~~Ys~wdW~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~I~~Ef~Ra~~i~~~i~ 361 (654)
+ .|..+++|. .+ .|.... -.| ..|.|+||.+|..|+|.+||..++.. |..|.+. .+
T Consensus 202 ----~--~wrp~~~ID-~~-------~~~~e~-f~d--~PliVvDPVDP~RNVAAalSl~~la~----f~~aar~---FL 257 (443)
T COG1746 202 ----S--RWRPGKIID-LE-------GHKRER-FED--EPLIVVDPVDPKRNVAAALSLENLAR----FVHAARE---FL 257 (443)
T ss_pred ----h--ccCCCeEEe-cc-------chhhhc-cCC--CCeEecCCCCCccchhhhcCHHHHHH----HHHHHHH---Hh
Confidence 2 277776553 22 221111 112 26999999999999999999876543 4444433 33
Q ss_pred cCCCCchhhcCCCc--------chhhccceeEEEEEeCChhhhhhhHhHHHHHHHHHHHhhhcCC
Q psy18158 362 NGKTMWDKLFETPN--------FFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNP 418 (654)
Q Consensus 362 ~~~~~W~~Lfe~~~--------Ff~~Yk~yl~I~v~a~~~e~~~~w~G~VESrlR~Lv~~LE~~~ 418 (654)
.. +=.+.|.|.. ...+=.+-+.+.+-..+.-+ ....|-++---+.|...||...
T Consensus 258 ~~--PS~efF~p~~~~~~~~~~~~~rgt~v~~l~~~~pd~vd-DilypQl~r~~~~l~r~Le~~g 319 (443)
T COG1746 258 KN--PSPEFFFPRKPKPLLLSKLRRRGTHVLALVFPKPDLVD-DILYPQLERTARSLFRALEEEG 319 (443)
T ss_pred cC--CChhhcCCCCcCcccccchhhcCceEEEEEeCCCCCCc-chhhHHHHHHHHHHHHHHHHcC
Confidence 22 2123332211 11111122333333444333 3444777777778888888643
No 14
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=98.03 E-value=0.00037 Score=72.25 Aligned_cols=213 Identities=15% Similarity=0.222 Sum_probs=148.0
Q ss_pred EEEeeeeeeCCCCCC-CceeEEEecCCCCChh---hHHHHHHHHHhcCCCccceEecccCcccEEEEEEc----CeeeeE
Q psy18158 106 IYTFGSYRLGVHHKG-ADIDALCVAPRHVDRA---DYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFD----GIEIDM 177 (654)
Q Consensus 106 l~~FGSy~lGv~~p~-SDID~l~v~p~~vsr~---~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~----GI~iDL 177 (654)
|.-+||+.-|+.+.| -+.|+++++...-|.+ ..-+.+.+-|+...+=.....|..+.+|.++..+. -...+.
T Consensus 5 V~rVG~~aKG~ll~Gd~~~~lVv~c~~~PT~~ll~~v~~~l~e~l~~~~~~e~~~~~~~~~~~~~~~~i~ltSp~~r~~~ 84 (246)
T smart00572 5 VMRVGSFAKGTLLKGDNVAELVLLCKEKPTSELVARLARKLPEQLKAVTEDEALIIVTSTKEPTMEVGILITSPLARVEL 84 (246)
T ss_pred eEEeeeeccCceecCCCceeEEEEecCCCcHHHHHHHHHHHHHHHhhcCcccceeeeeccCCCceeEEEEEecccccccc
Confidence 667899999999987 5678988887644443 22233444444432212223456777788777653 222233
Q ss_pred EEeeccccCCCCcccccchhhhhchhh-hhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchH
Q psy18158 178 LFARLALKEIPDDMDLRDDMLLKNLDQ-KCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGV 256 (654)
Q Consensus 178 sfa~l~~~~iP~~l~l~~d~lL~~lD~-~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGi 256 (654)
.. ..+|+++...++.. -+|. .|+.+|-.+|-+.+..........|+.++|++|-|+.+....+ -|.++
T Consensus 85 ~~-----~~~~~~~~~~~p~~--~ld~~~cl~aLAalRhakWFq~~a~~l~s~~iviRilKd~~~R~~~~~----pL~~w 153 (246)
T smart00572 85 LI-----TTVPENLRKLDPED--HLDRKKCLSALASLRHAKWFQARASGLQSCVIVIRVLRDLCNRVPTWQ----PLSGW 153 (246)
T ss_pred cc-----cccCcccccCCccc--cCCHHHHHHHHHHHHHhHHHHHhccCCcchhhHHHHHHHHHHhccccc----ccccc
Confidence 32 23455544333211 2333 5788888999999999888888899999999999999876544 38899
Q ss_pred HHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCC-CCCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCC-CCC
Q psy18158 257 SWAMLVARICQLYPN-AAASTLVCKFFLVFSQWK-WPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYP-QQN 333 (654)
Q Consensus 257 s~aiLVa~icQl~Pn-~s~~~LL~~FF~~Ys~wd-W~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P-~~N 333 (654)
.+-+++++.+--... .++++-+.+||++.++=- +|.. --|+||+.+ ..|
T Consensus 154 ~iELl~~~~i~~~~~~l~~~~a~RR~fe~lAsG~l~p~~----------------------------~gI~DPce~~~~n 205 (246)
T smart00572 154 PLELLVEKAIGSARQPLGLGDAFRRVFECLASGILLPGS----------------------------PGLTDPCEKDNTD 205 (246)
T ss_pred cHHHHHHHHhccCCCCCCHHHHHHHHHHHHHhccCcCCC----------------------------CCCcCCCCCCccc
Confidence 999999999863322 478999999999987511 2210 247789997 889
Q ss_pred cCCccChhhHHHHHHHHHHHHHHH
Q psy18158 334 STFNVSISTRTIMQEEFKQGKTIS 357 (654)
Q Consensus 334 sa~nVs~sTl~~I~~Ef~Ra~~i~ 357 (654)
++...|.-.++.|...-+.|.+++
T Consensus 206 v~~~lT~qqrd~It~sAQ~alRl~ 229 (246)
T smart00572 206 ALTALTLQQREDVTASAQTALRLL 229 (246)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888884
No 15
>KOG2054|consensus
Probab=98.00 E-value=7.6e-05 Score=88.41 Aligned_cols=163 Identities=18% Similarity=0.234 Sum_probs=117.8
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHHHHh---hCCCCChHHHHHHHHHHHhcCCCCC-c
Q psy18158 218 EILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQ---LYPNAAASTLVCKFFLVFSQWKWPQ-P 293 (654)
Q Consensus 218 ~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~icQ---l~Pn~s~~~LL~~FF~~Ys~wdW~~-p 293 (654)
++.+.....+.|+.++-..|.|+++|.. +-..|++||+-|++++++... ++-+.+..+++..-+++.+.|||.. -
T Consensus 299 ~L~K~~s~~~~f~da~~Llk~WlrqRs~-~~~~~gfg~f~~s~lvv~L~s~~ki~~~~S~yqvfR~vl~flat~dlt~~~ 377 (1121)
T KOG2054|consen 299 LLSKTLSSAKGFKDALALLKVWLRQRSL-DIGQGGFGGFLLSALVVYLVSTRKIHTTLSAYQVFRSVLQFLATTDLTVNG 377 (1121)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhh-hcccCcchHHHHHHHHHHHHhcCchhhcchHHHHHHHHHHHHhhhhhhccc
Confidence 3444455678999999999999999922 124789999999999998864 4677889999999999999999987 4
Q ss_pred eeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHHHHHHHHHHHHHHHHHhhcCCCCchhhc-C
Q psy18158 294 VLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLF-E 372 (654)
Q Consensus 294 V~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~I~~Ef~Ra~~i~~~i~~~~~~W~~Lf-e 372 (654)
+.+..-. .+. |....-+..+..+.++ ..-..|..-|++.++.+.+++|.+-+..++++...+ .++.+| +
T Consensus 378 ~~l~~~~-~s~------~~~~~f~e~~~~~f~D-~s~~~NLc~~mt~s~y~~~q~ea~ltl~lL~~~~~~--~F~~IFmt 447 (1121)
T KOG2054|consen 378 ISLVPSS-PSL------PALADFHEGQLVTFID-SSGHLNLCANMTASTYEQVQEEARLTLMLLDSRADD--GFSLIFMT 447 (1121)
T ss_pred eEeccCC-CCc------hhhhhhhhcceeeEec-cCCcchhhhhccHHHHHHHHHHHHHHHHHHhhhhhc--Ccceeeee
Confidence 4443210 000 0000001123333333 334689999999999999999999999999887654 466766 6
Q ss_pred CCcchhhccceeEEEEEeC
Q psy18158 373 TPNFFTKYRHYLVLIASSV 391 (654)
Q Consensus 373 ~~~Ff~~Yk~yl~I~v~a~ 391 (654)
+.+.|..|.|-+.+.....
T Consensus 448 kip~~~~yDh~l~l~~~~~ 466 (1121)
T KOG2054|consen 448 KIPVFRAYDHVLHLSPLSR 466 (1121)
T ss_pred cCCchhhhheeeeccccch
Confidence 7899999999888766643
No 16
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=97.72 E-value=0.0003 Score=65.91 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=56.6
Q ss_pred CcEEEEeeeeeeCCCCC-CCceeEEEecCCCC-----ChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEc--Cee
Q psy18158 103 GGKIYTFGSYRLGVHHK-GADIDALCVAPRHV-----DRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFD--GIE 174 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p-~SDID~l~v~p~~v-----sr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~--GI~ 174 (654)
...++.||||+.|...+ .||||++++.+... +..+++..+.+.|.+...- .......-|-|.+++. |++
T Consensus 27 ~~~~~~~GS~a~~T~i~~~sDiD~~v~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~v~v~~~~~~~~ 103 (143)
T cd05400 27 VAEVFLQGSYARGTALRGDSDIDLVVVLPDDTSFAEYGPAELLDELGEALKEYYGA---NEEVKAQHRSVTVKFKGQGFH 103 (143)
T ss_pred ccEEEEEcceeCCCCCCCCCceeEEEEEcCcccccccCHHHHHHHHHHHHHHhcCc---ccccccCceEEEEEEcCCCeE
Confidence 36899999999999977 89999999987643 3457777888888874331 1112455578888886 899
Q ss_pred eeEEEee
Q psy18158 175 IDMLFAR 181 (654)
Q Consensus 175 iDLsfa~ 181 (654)
|||.-+.
T Consensus 104 vDvvP~~ 110 (143)
T cd05400 104 VDVVPAF 110 (143)
T ss_pred EEEEEEe
Confidence 9997664
No 17
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1. The signatures that define this group of sequences often occur towards the C terminus after the PAP/25A core domain IPR001201 from INTERPRO.; PDB: 2B4V_A 2B56_A 2B51_A 4EP7_B 2NOM_B 2Q0G_B 2Q0D_B 2Q0C_A 2Q0F_A 2Q0E_A ....
Probab=97.57 E-value=3.1e-05 Score=62.61 Aligned_cols=57 Identities=16% Similarity=0.312 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHh-cCCCCCcee-ecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCC
Q psy18158 273 AASTLVCKFFLVFS-QWKWPQPVL-LKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQ 331 (654)
Q Consensus 273 s~~~LL~~FF~~Ys-~wdW~~pV~-L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~ 331 (654)
++++||..||+||+ .|||.+-|+ ++.+.........|.. ....+...|+|++|+.|+
T Consensus 1 slg~Ll~~Ff~~Y~~~Fd~~~~~Isi~~g~~~~k~~~~~~~--~~~~~~~~l~IeDP~~~~ 59 (60)
T PF03828_consen 1 SLGELLLGFFEYYGRKFDYENNVISIRNGGYFPKEEKNWSK--SRNQRKKRLCIEDPFDPS 59 (60)
T ss_dssp -HHHHHHHHHHHHHHTS-TTTEEEESSSSSEEEHHHHTGCH--CCCCECSSSEBBESSSTT
T ss_pred CHHHHHHHHHHHhCCcCCCCceEEEecCCceEEhhhccccc--cccCCCCeEEEECCCCCC
Confidence 57999999999999 899999764 4432111111234442 112234689999999985
No 18
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins. This superfamily includes the NT domains of DNA polymerase beta and other family X DNA polymerases, as well as the NT domains of Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly (A) polymerases, terminal uridylyl transferases, and Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. The Escherichia coli CCA-adding enzyme belongs to this superfamily but is not included as this enzyme lacks the N-terminal helix conserved in the remainder of the superfamily. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate coordinate two divalent metal cations that are essential for catalysis. These divalent metal ions are
Probab=97.46 E-value=0.00014 Score=57.29 Aligned_cols=26 Identities=42% Similarity=0.694 Sum_probs=24.3
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEe
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCV 128 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v 128 (654)
..+++.||||+.|.+.+.||||++|+
T Consensus 17 ~~~v~lfGS~arg~~~~~SDIDi~v~ 42 (49)
T cd05397 17 GYEIVVYGSLVRGLLKKSSDIDLACV 42 (49)
T ss_pred CcEEEEECCcCCCCCCCCCCEEEEEE
Confidence 37899999999999999999999987
No 19
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis. Sequence and secondary structure comparisons of regions surrounding these aspartates with sequences of other polymerases revealed a significant homology to the palm structure of DNA polymerase beta, terminal deoxynucleotidyltransferase and DNA polymerase IV of Saccharomyces cerevisiae, all members of the family X of polymerases. This homology extends as far as cca: tRNA nucleotidyltransferase and streptomycin adenylyltransferase, an antibiotic resistance factor [, ]. Proteins containing this domain include kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase inactivates antibiotics by catalysing the addition of a nucleotidyl group onto the drug. In experiments, Mn2+ strongly stimulated this reaction due to a 50-fold lower Ki for 8-azido-ATP in the presence of Mn2+. Mutations of the highly conserved Asp residues 113, 115, and 167, critical for metal binding in the catalytic domain of bovine poly(A) polymerase, led to a strong reduction of cross-linking efficiency, and Mn2+ no longer stimulated the reaction. Mutations in the region of the "helical turn motif" (a domain binding the triphosphate moiety of the nucleotide) and in the suspected nucleotide-binding helix of bovine poly(A) polymerase impaired ATP binding and catalysis. The results indicate that ATP is bound in part by the helical turn motif and in part by a region that may be a structural analogue of the fingers domain found in many polymerases.; GO: 0016779 nucleotidyltransferase activity; PDB: 4EBK_B 4EBJ_A 1KNY_A 2B4V_A 2B56_A 2B51_A 1NO5_B 1Q79_A 1Q78_A 1F5A_A ....
Probab=97.29 E-value=0.00028 Score=60.76 Aligned_cols=31 Identities=35% Similarity=0.578 Sum_probs=28.7
Q ss_pred cEEEEeeeeeeCCCCCCCceeEEEecCCCCC
Q psy18158 104 GKIYTFGSYRLGVHHKGADIDALCVAPRHVD 134 (654)
Q Consensus 104 ~kl~~FGSy~lGv~~p~SDID~l~v~p~~vs 134 (654)
..++.|||++.|.+.|+||||++++.+....
T Consensus 15 ~~v~lfGS~a~g~~~~~SDIDl~i~~~~~~~ 45 (93)
T PF01909_consen 15 AEVYLFGSYARGDATPDSDIDLLIILDEPED 45 (93)
T ss_dssp EEEEEEHHHHHTSSCTTSCEEEEEEESSTSC
T ss_pred CEEEEECCcccCcCCCCCCEEEEEEeCCccc
Confidence 7899999999999999999999999988654
No 20
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=96.96 E-value=0.0038 Score=53.18 Aligned_cols=32 Identities=38% Similarity=0.598 Sum_probs=28.4
Q ss_pred cEEEEeeeeeeCCCCCCCceeEEEecCCCCCh
Q psy18158 104 GKIYTFGSYRLGVHHKGADIDALCVAPRHVDR 135 (654)
Q Consensus 104 ~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr 135 (654)
..++.|||++.|-+.++||||++++.+.....
T Consensus 19 ~~i~LfGS~arg~~~~~SDiDl~vi~~~~~~~ 50 (93)
T cd05403 19 EKVYLFGSYARGDARPDSDIDLLVIFDDPLDP 50 (93)
T ss_pred cEEEEEeeeecCCCCCCCCeeEEEEeCCCCCH
Confidence 68999999999999999999999998875443
No 21
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
Probab=96.85 E-value=0.012 Score=71.88 Aligned_cols=157 Identities=21% Similarity=0.317 Sum_probs=105.4
Q ss_pred hhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHHHHh-hCC---CCChHHHHHHHHHHHhc
Q psy18158 212 GCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQ-LYP---NAAASTLVCKFFLVFSQ 287 (654)
Q Consensus 212 G~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~icQ-l~P---n~s~~~LL~~FF~~Ys~ 287 (654)
..+-+..|..+....+.|..++|++|.|.-.+-+ .|++.--.+-+|||++.- -+| +.++.+=+.+|.++-++
T Consensus 668 ~p~h~~~i~~l~~~~p~fs~tvRL~KrW~~shlL----s~~i~~E~vELlva~vfl~~~p~~~P~S~~~GFlRfL~lLs~ 743 (972)
T PF03813_consen 668 LPKHTSAIHGLHTRFPSFSPTVRLAKRWLSSHLL----SGHISEEAVELLVASVFLSPAPWSPPSSPQTGFLRFLHLLST 743 (972)
T ss_pred hHHHHHHHHHHHhhCCchhHHHHHHHHHHHhccC----cccCCHHHHHHHHHHHhcCCCCCCCCCCHhHHHHHHHHHHHh
Confidence 3445566666767788999999999999999977 457788899999998873 344 45666677888888899
Q ss_pred CCCCC-ceeecCCCCCCC--------CCcccCCCCCCCCCCCceeeeCCCCCCCCcC--CccChhhHHHHHHHHHHHHHH
Q psy18158 288 WKWPQ-PVLLKKPDNVNL--------GFPVWDPRVNVADRYHLMPIITPAYPQQNST--FNVSISTRTIMQEEFKQGKTI 356 (654)
Q Consensus 288 wdW~~-pV~L~~~~~~~l--------~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa--~nVs~sTl~~I~~Ef~Ra~~i 356 (654)
|||.. |+++.-.+.-.. .+..|-. ..+......|.|-||.+|.-..- ..-+..-+++|+.--+.+.++
T Consensus 744 ~dW~~~PLiVd~~~~l~~~~~~~i~~~f~~~R~-~dp~~~~p~~~IaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk~sl~~ 822 (972)
T PF03813_consen 744 WDWREEPLIVDFNNELTEEDRAEIETNFDAWRK-IDPAMNLPAMFIATPYDPEGSLWTRNGPSKVVAKRLTALAKASLKL 822 (972)
T ss_pred CCCCcCCEEEECCCCCCHHHHHHHHHHHHHhhc-cCccccCCcEEEEeCCCCCCCEeECCCCCHHHHHHHHHHHHHHHHH
Confidence 99985 877643221110 1122222 11222345799999999953321 234445567777777777777
Q ss_pred HHHhhcCCCCchhhcCC
Q psy18158 357 SEDIYNGKTMWDKLFET 373 (654)
Q Consensus 357 ~~~i~~~~~~W~~Lfe~ 373 (654)
++.-..+...|..||.+
T Consensus 823 l~~~~~~~~~~~~lF~~ 839 (972)
T PF03813_consen 823 LEEQGLSDLDWKSLFRP 839 (972)
T ss_pred HHhcCCCCCCHHHhcCC
Confidence 76322246799999974
No 22
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core. It is predominantly found in Archaeal tRNA nucleotidyltransferases, following the catalytic nucleotidyltransferase domain []. ; GO: 0004810 tRNA adenylyltransferase activity, 0016437 tRNA cytidylyltransferase activity; PDB: 3OUY_B 2ZHB_A 2ZH1_A 2ZH2_A 1UET_A 2ZH7_A 1R8B_A 2DR5_A 1TFW_C 3OVA_A ....
Probab=96.77 E-value=0.0031 Score=58.33 Aligned_cols=92 Identities=18% Similarity=0.329 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCCcCc--CCccchHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCCCCceeecCCCCCCCCCcccC
Q psy18158 233 LRTIKLWAKKHGIYSNV--LGYLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWD 310 (654)
Q Consensus 233 lr~IK~WAK~RgIysn~--~G~LGGis~aiLVa~icQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~L~~~~~~~l~~~vWd 310 (654)
+|.+|.++|.-|+|++- .++++||..-+||+++=- -..+| +.-+ +|..|+.|...+.+.. .
T Consensus 3 VrLLK~FlK~igvYGse~~~~GFSGYL~ELLii~yGs------F~~~l----~~a~--~W~~~~~Id~~~~~~~-----~ 65 (114)
T PF09249_consen 3 VRLLKQFLKGIGVYGSELKTRGFSGYLCELLIIHYGS------FENVL----EAAA--KWKPPVVIDLEDHGEP-----S 65 (114)
T ss_dssp HHHHHHHHHHTT-B-SSTTT-SB-HHHHHHHHHHHSS------HHHHH----HHHT--T--TTEEEETT-TTE-------
T ss_pred hHHHHHHHhcCCCcchhhhcCcchHHHHHHHHHHHCC------HHHHH----HHHH--hcCCCeEEccCccchh-----h
Confidence 58899999999999964 688999999999988631 11222 2223 6777776653321110 0
Q ss_pred CCCCCCCCCCceeeeCCCCCCCCcCCccChhhHHHH
Q psy18158 311 PRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIM 346 (654)
Q Consensus 311 p~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~I 346 (654)
..+ ...+.|+||.+|..|+|-+||..++..+
T Consensus 66 ~~f-----~~PlvviDPvDp~RNVAAalS~~~~~~f 96 (114)
T PF09249_consen 66 KKF-----DDPLVVIDPVDPNRNVAAALSLENLAEF 96 (114)
T ss_dssp EEE------SS-EEEETTEEEEETTTTS-HHHHHHH
T ss_pred hhc-----CCCeEEcCCCCCCchHhHhcCHHHHHHH
Confidence 000 2469999999999999999998776544
No 23
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=96.43 E-value=0.04 Score=53.61 Aligned_cols=105 Identities=18% Similarity=0.310 Sum_probs=70.7
Q ss_pred EEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccce-EecccCcccEEEEEEcCeeeeEEEeecccc
Q psy18158 107 YTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDL-RAVEEAFVPVIKMNFDGIEIDMLFARLALK 185 (654)
Q Consensus 107 ~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l-~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~ 185 (654)
...|...+|+..++||||++|..+. .+.|-+.+.+...+.++.+-- ..|..-..-+..|.+.|.+|-|---..
T Consensus 19 iL~GTiPi~Idi~~SDLDIic~~~d---~~~F~~~l~~~f~~~~~f~~~~~~i~~~~~~~~~F~~~~~~~EiF~Q~~--- 92 (152)
T PF14091_consen 19 ILVGTIPIGIDIPGSDLDIICEVPD---PEAFEQLLQSLFGQFEGFTIKEKTIRGEPSIVANFRYEGFPFEIFGQPI--- 92 (152)
T ss_pred EEecccccccCCCCCCccEEEEeCC---HHHHHHHHHHHhccCCCceeeeceeCCceeEEEEEEECCceEEEeecCC---
Confidence 4679999999999999999999874 445555555555554443211 234444555678888899988753332
Q ss_pred CCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCCh-hhHHHHHHHHH
Q psy18158 186 EIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNI-ENFRLALRTIK 237 (654)
Q Consensus 186 ~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~-~~Fr~llr~IK 237 (654)
| +..-||+|=...-.+++... +.||.-+|-+|
T Consensus 93 --P------------------v~~QnayrHm~iE~rLL~~~g~~~r~~Ii~LK 125 (152)
T PF14091_consen 93 --P------------------VEEQNAYRHMLIEHRLLELHGPSFREEIIELK 125 (152)
T ss_pred --C------------------hhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2 33457888665545555544 88999998887
No 24
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=95.67 E-value=0.048 Score=49.37 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=24.9
Q ss_pred cEEEEeeeeeeCCCCCCCceeEEEecCC
Q psy18158 104 GKIYTFGSYRLGVHHKGADIDALCVAPR 131 (654)
Q Consensus 104 ~kl~~FGSy~lGv~~p~SDID~l~v~p~ 131 (654)
.++-.||||.-|=..|+||||+++-.-.
T Consensus 25 ~~~~vFGS~aRgE~~~~SDIDILVef~~ 52 (97)
T COG1669 25 KRVAVFGSYARGEQKPDSDIDILVEFEP 52 (97)
T ss_pred ceEEEeeeeecCCCCCCCCceeEEeecC
Confidence 5788999999999999999999986644
No 25
>PRK13746 aminoglycoside resistance protein; Provisional
Probab=95.14 E-value=0.046 Score=57.59 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=28.6
Q ss_pred EEEEeeeeeeCCCCCCCceeEEEecCCCCChh
Q psy18158 105 KIYTFGSYRLGVHHKGADIDALCVAPRHVDRA 136 (654)
Q Consensus 105 kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~ 136 (654)
-|+.|||+..|-..|.||||++++....++..
T Consensus 30 ~vyLfGS~~~G~~~p~SDIDllvvv~~~l~~~ 61 (262)
T PRK13746 30 AIHLYGSAVDGGLKPHSDIDLLVTVAVPLDET 61 (262)
T ss_pred EEEEECCcccCCCCCCCceeEEEEeCCCCCHH
Confidence 58999999999999999999999998876644
No 26
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=94.54 E-value=1.7 Score=45.72 Aligned_cols=208 Identities=14% Similarity=0.246 Sum_probs=130.8
Q ss_pred eeeeeeCCCCCC-CceeEEEecCCCCChhhHHHHHH----HHHhcCCCccceEec------ccCcccEEEEEE--c--Ce
Q psy18158 109 FGSYRLGVHHKG-ADIDALCVAPRHVDRADYFSSFF----EKLKTVDEVTDLRAV------EEAFVPVIKMNF--D--GI 173 (654)
Q Consensus 109 FGSy~lGv~~p~-SDID~l~v~p~~vsr~~ff~~l~----~~L~~~~~v~~l~~I------~~A~VPIIKf~~--~--GI 173 (654)
.||+.-|+.+.| -+.|+|+++..--|. ++++.+. +.|+....-+-...+ ...+.|.+...+ . .+
T Consensus 2 VG~~aKGllL~Gd~~~eLVVlck~kPT~-~lL~~v~~~L~~~L~~~~~~ev~~~~e~~~~~~~~~~~~~~~~~~lts~~~ 80 (248)
T PF07528_consen 2 VGSFAKGLLLKGDNDVELVVLCKEKPTK-ELLNRVAEKLPEQLKKVTPEEVTNSVEAAIIIDSCKEPKLEVGIDLTSPVM 80 (248)
T ss_pred cceecCCceecCCceEeEEEEcCCCCcH-HHHHHHHHHHHHHHhhhCccccccchhhhhhhcccccccceeeEEecCCce
Confidence 599999999986 468888888764443 4454444 444432211111122 223335555543 2 23
Q ss_pred eeeEEEeeccccCCCCcccccchhhhhchhh-hhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCc
Q psy18158 174 EIDMLFARLALKEIPDDMDLRDDMLLKNLDQ-KCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGY 252 (654)
Q Consensus 174 ~iDLsfa~l~~~~iP~~l~l~~d~lL~~lD~-~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~ 252 (654)
.+.+..+ ..|+++.-.++. -.||. .|..+|-.+|=+.+..+........+.++|++|-..+|--- ++-
T Consensus 81 r~~~~~~-----~~~~~~~~~dp~--~~Ld~~~cl~aLaalRhakWFq~~a~~l~s~~~viRIlrDl~~R~p~----w~~ 149 (248)
T PF07528_consen 81 RVRVLIT-----TIPENLSKLDPE--DHLDRKKCLSALAALRHAKWFQARANGLQSCVIVIRILRDLRQRVPT----WQP 149 (248)
T ss_pred EEEEecc-----ccCccccccChh--hcCCHHHHHHHHHHHHHhHHHHHHhccCCCcceehhhHHHHHHhCCC----CCC
Confidence 3333322 234443322221 12444 67788888999999999888888899999999999888543 456
Q ss_pred cchHHHHHHHHHHHhhCCC---CChHHHHHHHHHHHhc-CCCCCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCC
Q psy18158 253 LGGVSWAMLVARICQLYPN---AAASTLVCKFFLVFSQ-WKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPA 328 (654)
Q Consensus 253 LGGis~aiLVa~icQl~Pn---~s~~~LL~~FF~~Ys~-wdW~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~ 328 (654)
|.++.+-+|+-+..---|+ .++++-+.+||+..|. +=-|.-. -|.||+
T Consensus 150 L~~W~leLL~~~~i~~~~~~~~l~~g~a~RRvle~lasGillp~~~----------------------------gl~DPc 201 (248)
T PF07528_consen 150 LSSWALELLVEKAISNNSSRQPLSPGDAFRRVLECLASGILLPGSP----------------------------GLRDPC 201 (248)
T ss_pred CChhHHHHHHHHHeeeCCCCCCCChHHHHHHHHHHHhCceecCCCC----------------------------CCcCCC
Confidence 8888888877766653333 5789999999999874 3222111 134566
Q ss_pred C-CCCCcCCccChhhHHHHHHHHHHHHHH
Q psy18158 329 Y-PQQNSTFNVSISTRTIMQEEFKQGKTI 356 (654)
Q Consensus 329 ~-P~~Nsa~nVs~sTl~~I~~Ef~Ra~~i 356 (654)
. ...++..+.|.-.+..|..--|.+.++
T Consensus 202 E~~~~~~~~~lt~qq~e~it~sAQ~~LRl 230 (248)
T PF07528_consen 202 EKDPVDVLDTLTLQQREDITSSAQTALRL 230 (248)
T ss_pred CCCCceeeccCCHHHHHHHHHHHHHHHHH
Confidence 6 457777778888888888777777776
No 27
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat. It carries the region of enzymic activity between residues 320 and 344 at the extreme C-terminal end []. Oligoadenylate synthetases are antiviral enzymes that counteract viral attack by degrading viral RNA. The enzyme uses ATP in 2'-specific nucleotidyl transfer reactions to synthesise 2'.5'-oligoadenylates, which activate latent ribonuclease, resulting in degradation of viral RNA and inhibition of virus replication []. This domain is often associated with IPR002934 from INTERPRO. ; PDB: 1PX5_B.
Probab=93.95 E-value=0.15 Score=51.35 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCcCc-CCccchHHHHHHHHHHHhhCCCC
Q psy18158 227 ENFRLALRTIKLWAKKHGIYSNV-LGYLGGVSWAMLVARICQLYPNA 272 (654)
Q Consensus 227 ~~Fr~llr~IK~WAK~RgIysn~-~G~LGGis~aiLVa~icQl~Pn~ 272 (654)
...+.++|.||+|-+...-.... -+.+.+|++-+|+++....-.+.
T Consensus 42 ~klK~LIrLVKhWy~~~~~~~~~~~~lPpsYaLELLtIyAWE~g~~~ 88 (190)
T PF10421_consen 42 TKLKNLIRLVKHWYQQCKKKKCGGGSLPPSYALELLTIYAWEQGCGA 88 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--HTT-S--HHHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhcCCC
Confidence 67899999999999986555333 34577899999999998775443
No 28
>COG1708 Predicted nucleotidyltransferases [General function prediction only]
Probab=93.87 E-value=0.046 Score=49.08 Aligned_cols=28 Identities=46% Similarity=0.596 Sum_probs=25.7
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecC
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAP 130 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p 130 (654)
...++.|||++-|=+.+.||||++++++
T Consensus 26 ~~~v~LfGS~arG~~~~~SDiDv~vv~~ 53 (128)
T COG1708 26 DLLIYLFGSYARGDFVKESDIDLLVVSD 53 (128)
T ss_pred CeEEEEEccCcccccccCCCeeEEEEcC
Confidence 3689999999999999999999999973
No 29
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=92.99 E-value=1.8 Score=46.55 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=70.1
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEc------Ceeee
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFD------GIEID 176 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~------GI~iD 176 (654)
+.++.+-||||-|-.+ .+|||+|+..+...+ ..++..+...|.+.+.+..+. ..-..-....+. |+.||
T Consensus 160 ~~~v~i~GS~RRg~et-~gDiDilv~~~~~~~-~~~~~~v~~~l~~~~~~~~~~---~~g~~k~~~~~~~~~~~~~~rVD 234 (307)
T cd00141 160 VLQVEIAGSYRRGKET-VGDIDILVTHPDATS-RGLLEKVVDALVELGFVTEVL---SKGDTKASGILKLPGGWKGRRVD 234 (307)
T ss_pred ceEEEEcccccCCCCc-cCCEEEEEecCCccc-cccHHHHHHHHHhCCCeehhh---hCCCceEEEEEecCCCCCceEEE
Confidence 5799999999999854 689999998776332 455677788888877664421 111111222222 89999
Q ss_pred EEEeeccccCCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCcc
Q psy18158 177 MLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYL 253 (654)
Q Consensus 177 Lsfa~l~~~~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~L 253 (654)
|.++... + ..-.++-+-.+ + .-.|-++.||++||..=+.+|..
T Consensus 235 l~~~p~~-------------~-----------------~~~all~fTGs-~---~~nr~lR~~A~~~G~~L~~~GL~ 277 (307)
T cd00141 235 LRVVPPE-------------E-----------------FGAALLYFTGS-K---QFNRALRRLAKEKGLKLNEYGLF 277 (307)
T ss_pred EEEeCHH-------------H-----------------HHHHHHHhhCC-H---HHHHHHHHHHHHcCCeeeccccc
Confidence 9988631 0 01122222222 2 23455689999999887777764
No 30
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=91.54 E-value=0.41 Score=49.42 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=29.0
Q ss_pred CcEEEEeeeee----eCC--CCCCCceeEEEecCCCCChhhH
Q psy18158 103 GGKIYTFGSYR----LGV--HHKGADIDALCVAPRHVDRADY 138 (654)
Q Consensus 103 ~~kl~~FGSy~----lGv--~~p~SDID~l~v~p~~vsr~~f 138 (654)
+..+.+|||+. +|+ -.++||||+++-.+...+.+.+
T Consensus 120 g~~~gv~GS~a~qlaTG~~~l~~~SDLDLLi~~~~~~~~~~~ 161 (221)
T PRK02098 120 GVDCRVFGSLAWQALTGLPYLSASSDLDLLWPLPAAAQIAPL 161 (221)
T ss_pred CCcEEEeeehHHHHhhCCcccCCCCCeeEEEecCChhhHHHH
Confidence 46899999999 999 8899999999988754444443
No 31
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific. Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.
Probab=90.92 E-value=0.48 Score=48.21 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=29.4
Q ss_pred CcEEEEeeee----eeCC--CCCCCceeEEEecCCCCChhhH
Q psy18158 103 GGKIYTFGSY----RLGV--HHKGADIDALCVAPRHVDRADY 138 (654)
Q Consensus 103 ~~kl~~FGSy----~lGv--~~p~SDID~l~v~p~~vsr~~f 138 (654)
+...-+|||+ .+|+ -.++||||+++-.|...+.+.+
T Consensus 108 ~~~~gv~GS~~~qlaTg~~~~~~~SDLDLLi~~~~~~~~~~~ 149 (202)
T TIGR03135 108 GVPWGVYGSAGWQLLTGLPYLHASSDLDLLLRAPSPLSLARL 149 (202)
T ss_pred CCcEEEecchHHHHhcCCcccCCCCCeeEEEcCCChhhHHHH
Confidence 5678999999 8998 8899999999988865555444
No 32
>KOG3793|consensus
Probab=88.39 E-value=34 Score=36.72 Aligned_cols=212 Identities=16% Similarity=0.257 Sum_probs=110.1
Q ss_pred HhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCc
Q psy18158 43 LDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGAD 122 (654)
Q Consensus 43 ~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SD 122 (654)
.|-..+++|.+ ++.++.|+.+|...=.....+++..+..-++ .|+.+ --=..|--.|||..|.-+.++|
T Consensus 37 ~D~~f~~alLk--RnqdL~P~~~~q~~I~~~vtKV~~vLdn~~~-----~~L~~----~~ieevrqVGSF~k~T~~tg~~ 105 (362)
T KOG3793|consen 37 PDTSFSEALLK--RNQDLAPNSAEQASILSLVTKVNNVLDNLVA-----PGLFE----VQIEEVRQVGSFKKGTMTTGHN 105 (362)
T ss_pred cchHHHHHHHh--hhccCCCCHHHHHHHHHHHHHHHHHHHhhcc-----CCceE----eehhhhhhccceeccccccCCc
Confidence 36677777766 4568999999987766666666666554321 12221 1114567789999999999888
Q ss_pred e-eEEEecCCCCChh---hHHHHHHHHHhcCC--CccceEecccCcccEEEEEE----cCeeeeEEEeeccccCCCCccc
Q psy18158 123 I-DALCVAPRHVDRA---DYFSSFFEKLKTVD--EVTDLRAVEEAFVPVIKMNF----DGIEIDMLFARLALKEIPDDMD 192 (654)
Q Consensus 123 I-D~l~v~p~~vsr~---~ff~~l~~~L~~~~--~v~~l~~I~~A~VPIIKf~~----~GI~iDLsfa~l~~~~iP~~l~ 192 (654)
. |++++-..--+-+ ..=++..+-|+... +|-. |-+.+--+ ..-.+-|+++ .+|+++.
T Consensus 106 ~advVViLkTLPt~EaV~aLg~Kv~e~lka~d~~Evlt--------vl~~e~G~~I~s~~~~VRiLIt-----~iP~n~~ 172 (362)
T KOG3793|consen 106 VADLVVILKTLPTLEAVAALGNKVVESLRAQDPSEVLT--------VLTNETGFEISSSDATVRILIT-----TVPPNLR 172 (362)
T ss_pred ccceEEEeecCCcHHHHHHHHHHHHHHhhhcChHHHHH--------HHhhccceeeecccceEEEEEe-----ecCchhc
Confidence 6 5666543322322 12233334444321 2211 11111111 1233444444 3565543
Q ss_pred ccchhhhhchhhhhhh-ccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHH-HHHHHHhhC-
Q psy18158 193 LRDDMLLKNLDQKCVR-SLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAM-LVARICQLY- 269 (654)
Q Consensus 193 l~~d~lL~~lD~~s~r-SLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~ai-LVa~icQl~- 269 (654)
-.. ++-.||-+-+. .+-.+|-+.+.-+. ......+.++|++|---.+ .-||--=-.|++ |++++|-+.
T Consensus 173 KLE--P~lHLD~K~M~~~l~a~RH~~WFee~-A~~s~~~~lir~LKDlr~r------~~~F~PLs~W~ldll~h~avmNn 243 (362)
T KOG3793|consen 173 KLE--PELHLDIKVMQSALAAIRHARWFEEN-ASQSTVKVLIRLLKDLRIR------FPGFEPLTPWILDLLGHYAVMNN 243 (362)
T ss_pred ccC--hhhhhhHHHHHHHHHHHhhhhhhhhh-hhHHHHHHHHHHHHHHHhh------cCCCCCchHHHHHHHHHHHHHcC
Confidence 221 22233332221 22333333322221 2235577788888865433 224422224554 667777663
Q ss_pred CC---CChHHHHHHHHHHHhc
Q psy18158 270 PN---AAASTLVCKFFLVFSQ 287 (654)
Q Consensus 270 Pn---~s~~~LL~~FF~~Ys~ 287 (654)
|+ +.++.-..+||++.+.
T Consensus 244 p~RQ~l~ln~Afrr~~qilaA 264 (362)
T KOG3793|consen 244 PTRQPLALNVAYRRCLQILAA 264 (362)
T ss_pred CccccchhhHHHHHHHHHHHh
Confidence 44 4677889999999875
No 33
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=87.02 E-value=1.4 Score=40.62 Aligned_cols=51 Identities=29% Similarity=0.458 Sum_probs=38.7
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCCCCCh----hhHHHHHHHHHhcCCCccc
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPRHVDR----ADYFSSFFEKLKTVDEVTD 154 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr----~~ff~~l~~~L~~~~~v~~ 154 (654)
+.++..-||||=|-.+.+ |||+++..|..-.. ..++..+...|.+..-++.
T Consensus 24 ~~~v~i~GSyRRGK~~~g-DiDiLIt~~~~~~~~~~~~~~l~~lv~~L~~~g~i~~ 78 (112)
T PF14792_consen 24 GLEVEICGSYRRGKETSG-DIDILITHPDPSSVSKKLEGLLEKLVKRLEEKGFITD 78 (112)
T ss_dssp T-EEEEEHHHHTT-SEES-SEEEEEEETTCSTTTCSTTCHHHHHHHHHHHTTSEEE
T ss_pred CcEEEEccccccCCCcCC-CeEEEEeCCCcCcchhhHHHHHHHHHHHHHhCCeEEE
Confidence 589999999999986655 99999999875442 4688889999988655443
No 34
>COG1665 Predicted nucleotidyltransferase [General function prediction only]
Probab=86.96 E-value=0.39 Score=50.84 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.3
Q ss_pred EEEeeeeeeCCCCCCCceeEEEecCCC
Q psy18158 106 IYTFGSYRLGVHHKGADIDALCVAPRH 132 (654)
Q Consensus 106 l~~FGSy~lGv~~p~SDID~l~v~p~~ 132 (654)
.=.-||..+|++..+||||+++.|+.+
T Consensus 124 mGVTGSiL~gl~~~nSDIDfVVYG~~~ 150 (315)
T COG1665 124 MGVTGSILLGLYDENSDIDFVVYGQMW 150 (315)
T ss_pred ccccccccccccCCCCCceEEEEcHHH
Confidence 336799999999999999999999644
No 35
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins. Escherichia coli GlnD and -E participate in the Glutamine synthetase (GS)/Glutamate synthase (GOGAT) pathway for the assimilation of ammonium nitrogen. In nitrogen sufficiency, GlnE adenylates GS, reducing GS activity; when nitrogen is limiting, GlnE deadenylates GS-AMP, restoring GS activity. When nitrogen is limiting, GlnD uridylylates the nitrogen regulatory protein PII to PII-UTP, and in nitrogen sufficiency, it removes the modifying groups. The activity of Escherichia coli GlnE is modulated by PII-proteins. PII-UMP promotes GlnE deadenylation activity, and PII promotes GlnE adenylation activity. Escherichia coli GlnE has two separate NT domains. The N-terminal NT domain catalyzes the deadenylylation of GS, and the C-terminal NT domain the adenylylation reaction. The majority of proteins in this family conta
Probab=81.27 E-value=7.9 Score=37.50 Aligned_cols=47 Identities=30% Similarity=0.373 Sum_probs=35.0
Q ss_pred cCcEEEEeeeeeeCCCCCCCceeEEEecCCCCC-hhhHHHHHHHHHhc
Q psy18158 102 VGGKIYTFGSYRLGVHHKGADIDALCVAPRHVD-RADYFSSFFEKLKT 148 (654)
Q Consensus 102 ~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vs-r~~ff~~l~~~L~~ 148 (654)
...-++.+|||+-|=-.+.||+|++++.+.... -..+|..+.+.+.+
T Consensus 54 ~~~~~la~Gs~GR~E~~~~SD~D~~~v~~~~~~~~~~~~~~l~~~i~~ 101 (172)
T cd05401 54 VPFALLALGSYGRGELNPSSDQDLLLLYDDDGDEVAAYFEELAERLIK 101 (172)
T ss_pred CcEEEEEeCCcccCCcCCCcCcceEEEeCCCCchHHHHHHHHHHHHHH
Confidence 357899999999999999999999999865322 13566665555443
No 36
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=80.05 E-value=9.5 Score=36.25 Aligned_cols=47 Identities=26% Similarity=0.253 Sum_probs=36.6
Q ss_pred cCcEEEEeeeeeeCCCCCCCceeEEEecCCCCC--hhhHHHHHHHHHhc
Q psy18158 102 VGGKIYTFGSYRLGVHHKGADIDALCVAPRHVD--RADYFSSFFEKLKT 148 (654)
Q Consensus 102 ~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vs--r~~ff~~l~~~L~~ 148 (654)
...-++.+||++=+=.++.||+|..+|.....+ ...+|..|.+.+..
T Consensus 48 ~~~a~lalGS~GR~E~~~~sDqD~alv~~d~~~~~~~~~f~~~a~~~~~ 96 (138)
T PF03445_consen 48 VPFAWLALGSYGRREQTLYSDQDNALVFEDEESEEDRAYFEAFAERLVD 96 (138)
T ss_pred CCEEEEEECcccccCCCcCccccceeeecCccchhHHHHHHHHHHHHHH
Confidence 357899999999999999999999998876333 34677766665543
No 37
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.09 E-value=7.2 Score=47.13 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCceeEEEecCCCCCh
Q psy18158 74 LSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDR 135 (654)
Q Consensus 74 l~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr 135 (654)
+.....++..|+..+-...|.++ ..+.-|..+|.|+=|--.|.||||++++.|...+.
T Consensus 41 ~~~~~~~~d~~L~~lw~~~g~~~----~~~~aLvAVGGyGRgEL~P~SDiDlL~L~p~~~~~ 98 (867)
T COG2844 41 IELRTDLVDQLLIRLWQEIGFAD----ASGLALVAVGGYGRGELHPLSDIDLLLLSPQKLTD 98 (867)
T ss_pred HHHHHHHHHHHHHHHHHHcCccc----ccceEEEEeccccccccCCCccceEEEecCCCCCh
Confidence 33444555666666666677775 34688999999999999999999999999986553
No 38
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=78.22 E-value=31 Score=37.68 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=23.7
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCC
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPR 131 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~ 131 (654)
..++..-||||=|-. -.+|||+|+..+.
T Consensus 164 ~~~v~i~GSyRRgke-t~gDIDili~~~~ 191 (334)
T smart00483 164 DAIVTLTGSFRRGKE-TGHDVDFLITSPH 191 (334)
T ss_pred CcEEEEecccccCCC-cCCCeeEEEecCC
Confidence 478999999999985 4689999998776
No 39
>KOG2054|consensus
Probab=75.56 E-value=14 Score=45.59 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=68.8
Q ss_pred hhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHHHHhh----CCCCChHHHHHHHHHHHhcCC
Q psy18158 214 RVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQL----YPNAAASTLVCKFFLVFSQWK 289 (654)
Q Consensus 214 Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~icQl----~Pn~s~~~LL~~FF~~Ys~wd 289 (654)
|.+-.|..+-..++.|-.++|.-|.|...+=+-+ |.+ -=++-+|||...+. .|..++-.=..+|..+-|+||
T Consensus 806 ~ht~aL~~l~qsh~~ys~vvrLaKrWl~shLL~~---h~~-De~iELLva~lf~~p~p~~~psS~~~gFlRfL~llS~~d 881 (1121)
T KOG2054|consen 806 LHTLALQSLSQSHPFYSSVVRLAKRWLGSHLLSG---HHL-DEAIELLVAALFLKPGPLVPPSSPENGFLRFLSLLSTWD 881 (1121)
T ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcc---chH-HHHHHHHHHHHhcCccCCCCCCCcchhHHHHHHHHhcCc
Confidence 4455555566667899999999999988764332 112 34567888876543 345666677889999999999
Q ss_pred CCC-ceeecCCCCCCCC--CcccCCCCCCCCCCCceeeeCCCCCC
Q psy18158 290 WPQ-PVLLKKPDNVNLG--FPVWDPRVNVADRYHLMPIITPAYPQ 331 (654)
Q Consensus 290 W~~-pV~L~~~~~~~l~--~~vWdp~~~~~dr~~~MpIitP~~P~ 331 (654)
|.. |.++.-..+-.-. ....+.....+..+..|.|+||-+-.
T Consensus 882 W~~~PLIvd~nn~~~ed~~~e~~e~f~s~R~~lp~m~vit~yD~~ 926 (1121)
T KOG2054|consen 882 WKFDPLIVDFNNGFPEDERSELEEKFISARKQLPPMVVITPYDHL 926 (1121)
T ss_pred ccCCceEEEcCCCCcHHHHHHHHHHHhhhcccCCceEEeeccccc
Confidence 985 7665421100000 00000011111223479999998873
No 40
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=75.45 E-value=9.1 Score=45.85 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHH
Q psy18158 68 SSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKL 146 (654)
Q Consensus 68 ~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L 146 (654)
+.|+++-+.-..+++. .++|+ +.-|...|+|+-|=-.|.||||++++.+.... +++.+.|...|
T Consensus 6 ~~~~~~~~~~~~~~~~--------~~~~~------~~aLvAvGGYGR~EL~P~SDIDLLiL~~~~~~-~~~i~~~~~~L 69 (693)
T PRK00227 6 QLREDAEASALALLGS--------LQLPP------GTALAATGSLARREMTPYSDLDLILLHPPGAT-PDGVEDLWYPI 69 (693)
T ss_pred HHHHHHHHHHHHHHHh--------cCCCC------CeEEEEeccccccCcCCCcCceEEEEeCCccc-HHHHHHHHHHH
Confidence 3455665555555553 24654 56899999999999999999999999874332 44444444444
No 41
>PRK08609 hypothetical protein; Provisional
Probab=74.97 E-value=30 Score=40.50 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=63.2
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEE-cCeeeeEEEee
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNF-DGIEIDMLFAR 181 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~-~GI~iDLsfa~ 181 (654)
..++..-||||-|-- -..|||+|+..+. . ..+.+.|.+.+.|.++..-...+.-+ .+.. .|+.|||-++.
T Consensus 175 ~~~v~~~GS~RR~~e-t~gDiDili~~~~---~----~~~~~~l~~~~~v~~~~~~g~~~~~~-~~~~~~~~~vDl~~v~ 245 (570)
T PRK08609 175 IIRFSRAGSLRRARE-TVKDLDFIIATDE---P----EAVREQLLQLPNIVEVIAAGDTKVSV-ELEYEYTISVDFRLVE 245 (570)
T ss_pred ccEEEeccchhcccc-ccCCeeEEEecCC---H----HHHHHHHHcCccHHHHHhcCCceEEE-EEecCCCeEEEEEEeC
Confidence 468999999999984 4579999988754 2 22334444555554432222222221 2332 39999999886
Q ss_pred ccccCCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCcc
Q psy18158 182 LALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYL 253 (654)
Q Consensus 182 l~~~~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~L 253 (654)
.. +. .-.++-.-.. +.| .|-++.||+++|..-|-+|..
T Consensus 246 ~~-------------~~-----------------~~aL~yfTGS-~~h---n~~lr~~A~~~g~~l~e~gl~ 283 (570)
T PRK08609 246 PE-------------AF-----------------ATTLHHFTGS-KDH---NVRMRQLAKERGEKISEYGVE 283 (570)
T ss_pred HH-------------HH-----------------HHHHHHHhcc-HHH---HHHHHHHHHHcCCcccccccc
Confidence 31 11 0111222222 222 344589999999988888874
No 42
>PF10620 MdcG: Phosphoribosyl-dephospho-CoA transferase MdcG; InterPro: IPR017557 Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61 from EC). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.; GO: 0016779 nucleotidyltransferase activity
Probab=70.43 E-value=11 Score=38.54 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=27.9
Q ss_pred CcEEEEeeeee----eC--CCCCCCceeEEEecCCCCChhhHHHHH
Q psy18158 103 GGKIYTFGSYR----LG--VHHKGADIDALCVAPRHVDRADYFSSF 142 (654)
Q Consensus 103 ~~kl~~FGSy~----lG--v~~p~SDID~l~v~p~~vsr~~ff~~l 142 (654)
+...-+|||+. +| .-.++||||+++-.+.....+.+...+
T Consensus 116 ~~~~gv~GS~g~qlaTGl~~l~~~SDLDLli~~~~~~~~~~l~~~L 161 (213)
T PF10620_consen 116 GLRWGVYGSLGFQLATGLPYLHADSDLDLLIRPPSPSQADALLALL 161 (213)
T ss_pred CCCEEEehhHHHHHHhCccccCCCCCceEEEeCCChhHHHHHHHHH
Confidence 57788999983 33 356899999999888755443444333
No 43
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=68.99 E-value=19 Score=44.22 Aligned_cols=56 Identities=9% Similarity=0.144 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCceeEEEecCCC
Q psy18158 73 VLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRH 132 (654)
Q Consensus 73 Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~ 132 (654)
++.....++.++++..-.....+. ..+.-|...|+|+=|=-.|.||||++++.+..
T Consensus 30 ~~~~~~~~~D~~l~~l~~~~~~~~----~~~iaLvAvGGYGR~eL~P~SDIDlliL~~~~ 85 (854)
T PRK01759 30 LIENRSDFYDQLLIHLWQQFGLEE----QSDLALIAVGGYGRREMFPLSDLDILILTEQP 85 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCC----CCCeEEEEeCCcccccCCCcccceEEEEeCCC
Confidence 555555666666655444333321 12478999999999999999999999998743
No 44
>PRK05007 PII uridylyl-transferase; Provisional
Probab=68.94 E-value=18 Score=44.57 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCceeEEEecCCC
Q psy18158 73 VLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRH 132 (654)
Q Consensus 73 Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~ 132 (654)
++..+..++.++++..-...+.+. ..+.-|+..|+|+-|=-.|.||||++++.+..
T Consensus 54 ~~~~~s~~~D~~l~~l~~~~~~~~----~~~~alvAvGgyGR~EL~p~SDiDll~l~~~~ 109 (884)
T PRK05007 54 LVEARTEFIDQLLQRLWIEAGFDQ----IPDLALVAVGGYGRGELHPLSDIDLLILSRKK 109 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCC----cCceEEEecCCCCCcccCCcccceEEEEeCCC
Confidence 445555555555555444444432 13578999999999999999999999998743
No 45
>PRK03059 PII uridylyl-transferase; Provisional
Probab=65.70 E-value=21 Score=43.79 Aligned_cols=54 Identities=24% Similarity=0.435 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCceeEEEecCC
Q psy18158 72 EVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPR 131 (654)
Q Consensus 72 ~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p~ 131 (654)
+++..+..++.++++..-...+.+. +.-|...|+|+-|=-.|.||||++++.+.
T Consensus 36 ~~~~~~s~l~d~~l~~~~~~~~~~~------~~alvAvGgyGR~EL~p~SDiDll~l~~~ 89 (856)
T PRK03059 36 ALLHALSRLVDQALRRLWQECGLPA------GAALVAVGGYGRGELFPYSDVDLLVLLPD 89 (856)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC------CeEEEEcCCCCCcccCCCCCCEEEEEecC
Confidence 3566666666666655443333332 46899999999999999999999999864
No 46
>PF03710 GlnE: Glutamate-ammonia ligase adenylyltransferase; InterPro: IPR005190 This is a conserved repeated domain found in GlnE proteins. These proteins adenylate and deadenylate glutamine synthases: ATP + {L-Glutamate:ammonia ligase (ADP-forming)} = Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase (ADP-forming)}. The domain is related to the nucleotidyltransferase domain IPR002934 from INTERPRO.; GO: 0008882 [glutamate-ammonia-ligase] adenylyltransferase activity; PDB: 1V4A_A 3K7D_A.
Probab=64.43 E-value=16 Score=38.03 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=33.6
Q ss_pred hhhCCCcccc-cccCcEEEEeeeeeeCCCCCCCceeEEEecCCC-------CChhhHHHHHHHHHhc
Q psy18158 90 IAKNIPPTVA-EKVGGKIYTFGSYRLGVHHKGADIDALCVAPRH-------VDRADYFSSFFEKLKT 148 (654)
Q Consensus 90 ~~~~~p~~~~-~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~-------vsr~~ff~~l~~~L~~ 148 (654)
.+.|.|+... ...+.-|+..|-++-+=-..+||||+++|.+.. ++...||..+.+.+.+
T Consensus 113 ~~~G~p~~~~~~~~~~~ViamGKlGg~ELny~SDiDLifvy~~~~~~~~~~~~~~~~~~rl~~~~~~ 179 (247)
T PF03710_consen 113 ARYGRPPDEDGEPAGFAVIAMGKLGGRELNYSSDIDLIFVYDPDGETGRRSISNQEFFTRLAQRLIR 179 (247)
T ss_dssp HHCTSCCCCTTCC-SEEEEE-HHHHTT---TT--EEEEEEE---TT-SSS-SBHHHHHHHHHHHHHH
T ss_pred HHcCCCCcccCCcCCeEEEEeccccccccCCccCCceEEEeccccccccChhhHHHHHHHHHHHHHH
Confidence 3456664211 122578888898888888899999999987642 3335788887777654
No 47
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=60.29 E-value=1.1e+02 Score=30.49 Aligned_cols=76 Identities=21% Similarity=0.194 Sum_probs=44.6
Q ss_pred CcEEEEeeeee----eCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEE
Q psy18158 103 GGKIYTFGSYR----LGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDML 178 (654)
Q Consensus 103 ~~kl~~FGSy~----lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLs 178 (654)
|.+.+..|++. +|.-....|||+.+..+...-..+++..+.....-.-+-+++ .....++++...++.|||
T Consensus 16 gv~~~ivGG~av~l~~g~~r~T~DIDlfi~~~~~~~~~~~~~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~v~IDl- 90 (181)
T PF09970_consen 16 GVEYVIVGGAAVNLAYGRRRTTKDIDLFIENPSPNLEADALREVAEENGWDLGWTDF----GTPRYVVKVGGEDVRIDL- 90 (181)
T ss_pred CCeEEEECHHHHHHHhCCCCCCCCeEEEeCCCchHHHHHHHHHHHHHcCCCcCcccc----CCCceEEEeCCCCeEEEc-
Confidence 45788999985 466777899999887665333334454443322110111221 223455666667999999
Q ss_pred Eeecc
Q psy18158 179 FARLA 183 (654)
Q Consensus 179 fa~l~ 183 (654)
+.++.
T Consensus 91 ~~ni~ 95 (181)
T PF09970_consen 91 LENIG 95 (181)
T ss_pred hhccC
Confidence 55543
No 48
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=55.63 E-value=44 Score=41.33 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=27.2
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCCC
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPRH 132 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~~ 132 (654)
+.-|...|.|+=|-=.|.||||++++.+..
T Consensus 78 ~~alvAvGgyGR~EL~p~SDiDll~l~~~~ 107 (895)
T PRK00275 78 DIALVAVGGYGRGELHPYSDIDLLILLDSA 107 (895)
T ss_pred CEEEEEcCCccccCcCCCCCceEEEEecCC
Confidence 578999999999999999999999998753
No 49
>PF10127 Nuc-transf: Predicted nucleotidyltransferase; InterPro: IPR018775 Proteins in this entry are predicted to catalyse the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.
Probab=53.94 E-value=11 Score=38.93 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=21.8
Q ss_pred EEEEeeeeeeCCCCCCCceeEEEecC
Q psy18158 105 KIYTFGSYRLGVHHKGADIDALCVAP 130 (654)
Q Consensus 105 kl~~FGSy~lGv~~p~SDID~l~v~p 130 (654)
=...+||-.-|+.+|+||.|+-.|.-
T Consensus 22 ~~~~sGS~a~G~~s~dSD~D~r~vy~ 47 (247)
T PF10127_consen 22 YACESGSRAYGFASPDSDYDVRGVYI 47 (247)
T ss_pred EEecccccccCCCCCCcCcccchhcc
Confidence 34568999999999999999877653
No 50
>PRK01293 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=53.33 E-value=26 Score=36.06 Aligned_cols=35 Identities=34% Similarity=0.402 Sum_probs=25.9
Q ss_pred CcEEEEeeeee----eC--CCCCCCceeEEEecCCCCChhh
Q psy18158 103 GGKIYTFGSYR----LG--VHHKGADIDALCVAPRHVDRAD 137 (654)
Q Consensus 103 ~~kl~~FGSy~----lG--v~~p~SDID~l~v~p~~vsr~~ 137 (654)
+...-+|||.. +| .-.++||||+++..|...+.+.
T Consensus 109 ~~~wgv~GS~g~qlaTGl~~l~~~SDLDLlir~~~~l~~~~ 149 (207)
T PRK01293 109 GLAWGVTGSAGFELATGIPVLHADSDLDLLIRAPQPLARDQ 149 (207)
T ss_pred CCceeeehhHHHHHhhCCccccCCCCccEeecCCCcccHHH
Confidence 45667999984 33 4567999999999987666543
No 51
>PRK03381 PII uridylyl-transferase; Provisional
Probab=52.74 E-value=49 Score=40.26 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=26.5
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCC
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPR 131 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~ 131 (654)
..-|...|+|+-|--.|.||||++++.+.
T Consensus 57 ~~alvAvg~~gr~el~p~SD~Dll~l~~~ 85 (774)
T PRK03381 57 GVALVAVGGLGRRELLPYSDLDLVLLHDG 85 (774)
T ss_pred CeEEEEeCCcCCcCcCCCCCCeEEEEeCC
Confidence 46899999999999999999999999873
No 52
>PRK14109 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=52.23 E-value=34 Score=42.86 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=36.3
Q ss_pred cCcEEEEeeeeeeCCCCCCCceeEEEecCCC-----CChhhHHHHHHHHHhc
Q psy18158 102 VGGKIYTFGSYRLGVHHKGADIDALCVAPRH-----VDRADYFSSFFEKLKT 148 (654)
Q Consensus 102 ~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~-----vsr~~ff~~l~~~L~~ 148 (654)
.+.-|+.+|+|+-+=-++.||||++++.... .+...||..+.+.+.+
T Consensus 722 ~~~avia~Gk~Gr~EL~~~SDlDl~fl~~~~~~~~~~~~~~~~~rlaq~l~~ 773 (1007)
T PRK14109 722 ARIAVIGMGRLGGRELGYGSDADVMFVHEPAPGADEAEAVRWATAVAEELRR 773 (1007)
T ss_pred CCEEEEEeccccccccCCCCCCcEEEEeCCCCCCCchhHHHHHHHHHHHHHH
Confidence 3578999999999999999999999998631 1223688777766654
No 53
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=52.03 E-value=51 Score=40.37 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=26.6
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCC
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPR 131 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~ 131 (654)
+.-|...|||+-|=-.|.||||++++.+.
T Consensus 43 ~~aliA~GgyGR~El~p~SDiDll~l~~~ 71 (850)
T TIGR01693 43 GIALVAVGGYGRGELAPYSDIDLLFLHDG 71 (850)
T ss_pred CeEEEEeCCccccCcCCCCCCeEEEEeCC
Confidence 57899999999999999999999999874
No 54
>PRK04374 PII uridylyl-transferase; Provisional
Probab=49.46 E-value=60 Score=40.09 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=26.6
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCC
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPR 131 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~ 131 (654)
+.-|...|+|+-|=-.|.||||++++.+.
T Consensus 72 ~~alvAvGgYGR~EL~p~SDIDLliL~~~ 100 (869)
T PRK04374 72 GLSLHAVGGYGRGELFPRSDVDLLVLGET 100 (869)
T ss_pred CEEEEEcCCccccccCCcccceEEEEecC
Confidence 47899999999999999999999999874
No 55
>KOG2534|consensus
Probab=49.35 E-value=52 Score=36.15 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=36.0
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCCCCC-hhhHHHHHHHHHhcC
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPRHVD-RADYFSSFFEKLKTV 149 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vs-r~~ff~~l~~~L~~~ 149 (654)
++.+..-|||+-|- ..+.|||+|+..|..-+ ....+..+...|.+.
T Consensus 171 ~~~vt~~GsfRRGk-~~ggDvD~LithP~~~s~~~~~~~~l~~~le~~ 217 (353)
T KOG2534|consen 171 EAFVTVTGSFRRGK-KMGGDVDFLITHPGSTSTEAKLLQLLMILLEKK 217 (353)
T ss_pred CcEEEEeccccCCc-ccCCCeeEEEeCCCCCchhhhHHHHHHHHHHhc
Confidence 47899999999996 78999999999887544 235667777777763
No 56
>PF03296 Pox_polyA_pol: Poxvirus poly(A) polymerase nucleotidyltransferase domain; InterPro: IPR024231 Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This entry represents the nucleotidyltransferase domain of the catalytic subunit [].; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=47.01 E-value=20 Score=34.84 Aligned_cols=64 Identities=28% Similarity=0.543 Sum_probs=31.5
Q ss_pred HHHHhccCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCC---Ccee
Q psy18158 51 LAECLKPYNVSETDEELSSRMEV---LSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKG---ADID 124 (654)
Q Consensus 51 L~~~L~~~~~~ps~eE~~~R~~V---l~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~---SDID 124 (654)
..+.|.++++..-.++...|..| +..+.+++++.+++ ++ -....+|||.+-+-.|+ +|||
T Consensus 9 a~~~l~s~~v~~~~~~~~grh~vS~lV~~V~klmeEyLrr----hN----------k~CicYGSyslhllN~~I~YgDID 74 (149)
T PF03296_consen 9 ASDYLNSYNVANPSGKVMGRHNVSDLVENVNKLMEEYLRR----HN----------KSCICYGSYSLHLLNPNIKYGDID 74 (149)
T ss_dssp HHHHHHHH--S-------------THHHHHHHHHHHHHHH-----T----------TTEEEESHHHHHTTSTTS--SS-E
T ss_pred HHHHHHHhcccccCccccccccCcHHHHHHHHHHHHHHHh----hC----------CCeEEeeeeeEEecCCCcccCcch
Confidence 34667777777777777888765 34445555555553 32 34789999988877775 8999
Q ss_pred EEEe
Q psy18158 125 ALCV 128 (654)
Q Consensus 125 ~l~v 128 (654)
++=.
T Consensus 75 ilqT 78 (149)
T PF03296_consen 75 ILQT 78 (149)
T ss_dssp EEES
T ss_pred hhhc
Confidence 8543
No 57
>PF03281 Mab-21: Mab-21 protein
Probab=46.56 E-value=2.9e+02 Score=28.95 Aligned_cols=210 Identities=14% Similarity=0.104 Sum_probs=109.9
Q ss_pred eeeeeCCC-CCCCceeEEEe-cCCCCChhhHHHHHHHHHhcC----CC----ccceEecccCcccEEEEEEc-C---eee
Q psy18158 110 GSYRLGVH-HKGADIDALCV-APRHVDRADYFSSFFEKLKTV----DE----VTDLRAVEEAFVPVIKMNFD-G---IEI 175 (654)
Q Consensus 110 GSy~lGv~-~p~SDID~l~v-~p~~vsr~~ff~~l~~~L~~~----~~----v~~l~~I~~A~VPIIKf~~~-G---I~i 175 (654)
|.+.+.+. ...+.+|=.+- ...++++..+.+.|..++.+. .. ............|.+++.+. + |.|
T Consensus 38 g~~~l~l~~~~~~~~~~~l~~~~~yLs~~kv~~~f~~lv~~ai~~~~~~~~~~~~~~~~~~~~g~a~tl~v~~~~~~i~v 117 (292)
T PF03281_consen 38 GYVFLRLRPRDSSFWDQWLDCEDGYLSPSKVLSWFRKLVQKAINKCSHSSKRGYVSVISLKPGGPAVTLIVESGGRRISV 117 (292)
T ss_pred ceEEEEeccCChhhHHHHHHhcCCeeCHHHHHHHHHHHHHHHHHHhhccccCCccceeeccCCCceEEEEEecCCceEEE
Confidence 44455552 22344554443 667788776555555555442 11 12334555778888888874 5 899
Q ss_pred eEEEeeccccCCCCc------------------------ccccch-hhhhchhhhhhhccchhhhHHHHHHhcCChhhHH
Q psy18158 176 DMLFARLALKEIPDD------------------------MDLRDD-MLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFR 230 (654)
Q Consensus 176 DLsfa~l~~~~iP~~------------------------l~l~~d-~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr 230 (654)
||.-+---....|.. ..+..- ......++..+|- .=.+.=..+++.+ ....+
T Consensus 118 dlVPa~~~~~~WP~~a~~~~~~~~~Wp~~~~~~~~~~~~~~lvpk~~~~~~~~~~~Wrl-sf~~~E~~ll~~~--~~~~~ 194 (292)
T PF03281_consen 118 DLVPAFEFPGGWPRSAQEWLRRFNGWPSPKLIQEIKSFGFHLVPKPCSPNSDSENSWRL-SFSVAERQLLKNL--NGCRK 194 (292)
T ss_pred EEEEEEEEcCCCCcccccccccccCCCchhhhhhcccCceEEeeeccCCCCCCCceEEE-ehHHHHHHHHHhc--cccHH
Confidence 998773221112211 000000 0000111122210 0000111333333 45678
Q ss_pred HHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCCCCCceeecCCCCCCCCCc
Q psy18158 231 LALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNA---AASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFP 307 (654)
Q Consensus 231 ~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~icQl~Pn~---s~~~LL~~FF~~Ys~wdW~~pV~L~~~~~~~l~~~ 307 (654)
.+++++|.-..+.. ...+.|++|++-.++.+.|..+|.. ....|-.+|..+.... +.....+.+
T Consensus 195 ~~l~llk~l~~~~~---~~~~~l~syhLkt~ll~~~~~~p~~~~W~~~~l~~~l~~~l~~L-------~~~L~~~~L--- 261 (292)
T PF03281_consen 195 KCLRLLKALRDRHL---TNLSGLSSYHLKTVLLWLCEKHPSSSDWSEENLGERLLDLLDFL-------IKCLQEGRL--- 261 (292)
T ss_pred HHHHHHHHHHHhcc---ccCCCccHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH-------HHHHhcCCC---
Confidence 99999998877766 5567899999999999999999875 1233333333322110 000011111
Q ss_pred ccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHHHHHHHHHH
Q psy18158 308 VWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQ 352 (654)
Q Consensus 308 vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~I~~Ef~R 352 (654)
| .-+.|.+|.=.+.+..++..+.+++.+
T Consensus 262 ---p--------------hff~~~~NLf~~~~~~~~~~~~~~~~~ 289 (292)
T PF03281_consen 262 ---P--------------HFFIPNLNLFQHLSPEELDELARKLER 289 (292)
T ss_pred ---C--------------ccCCCCcccCCCCCHHHHHHHHHHHHH
Confidence 0 124567888888888777777766654
No 58
>COG2413 Predicted nucleotidyltransferase [General function prediction only]
Probab=46.27 E-value=42 Score=34.67 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=22.8
Q ss_pred cEEEEeeeeeeCCCCCCCceeEEEecC
Q psy18158 104 GKIYTFGSYRLGVHHKGADIDALCVAP 130 (654)
Q Consensus 104 ~kl~~FGSy~lGv~~p~SDID~l~v~p 130 (654)
..-+.+||.+.|=-.|+||+|+.+.-|
T Consensus 38 ie~~v~gSvarGDV~p~SDvDV~I~~~ 64 (228)
T COG2413 38 IEAVVYGSVARGDVRPGSDVDVAIPEP 64 (228)
T ss_pred chhEEEeeeeccCcCCCCCceEEEecC
Confidence 344689999999989999999988764
No 59
>COG3541 Predicted nucleotidyltransferase [General function prediction only]
Probab=37.36 E-value=16 Score=38.59 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=17.5
Q ss_pred eeeeeeCCCCCCCceeEEEe
Q psy18158 109 FGSYRLGVHHKGADIDALCV 128 (654)
Q Consensus 109 FGSy~lGv~~p~SDID~l~v 128 (654)
-||..-|+..|+||+|+=-|
T Consensus 16 sGS~~yGf~spdSDyDvR~V 35 (248)
T COG3541 16 SGSHLYGFPSPDSDYDVRGV 35 (248)
T ss_pred ccccccCCCCCCCccceeeE
Confidence 39999999999999997544
No 60
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=37.19 E-value=56 Score=35.81 Aligned_cols=70 Identities=24% Similarity=0.266 Sum_probs=55.0
Q ss_pred cEEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEee
Q psy18158 104 GKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFAR 181 (654)
Q Consensus 104 ~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~ 181 (654)
.++---||.|-|-.+ .+|||++|.... . ..+.+.|.+.+.+.++..-.+.+|-++.--..|++||+-++.
T Consensus 181 ~~~~~aGs~RR~ret-v~DiD~~~s~~~---~----~~v~~~~~~~~~~~~vi~~G~~k~s~~~~~~~~~svD~r~v~ 250 (326)
T COG1796 181 IQASIAGSLRRGRET-VGDIDILISTSH---P----ESVLEELLEMPNVQEVIAKGETKVSMLLILDEGTSVDFRVVP 250 (326)
T ss_pred heeeeccchhhcccc-ccceeeEeccCC---c----HHHHHHHhcCCCcceeeecCCceeeEEEEecCCCeeEEEEcC
Confidence 456667999988865 689999887543 1 125566667888999999999999988888899999998775
No 61
>PHA02996 poly(A) polymerase large subunit; Provisional
Probab=36.73 E-value=34 Score=38.41 Aligned_cols=62 Identities=29% Similarity=0.548 Sum_probs=42.1
Q ss_pred HHhccCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCC---CceeEE
Q psy18158 53 ECLKPYNVSETDEELSSRMEV---LSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKG---ADIDAL 126 (654)
Q Consensus 53 ~~L~~~~~~ps~eE~~~R~~V---l~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~---SDID~l 126 (654)
+.|+.+++.+..+...-|..| +..+.+++++.+++ + +-.+..||||.+-+-.|. +|||++
T Consensus 128 ~~L~synv~~~~~kvmgrh~VSdLV~~V~klmeEyLrr----h----------Nk~CicYGSySlhllNp~I~YgDIDil 193 (467)
T PHA02996 128 DALNSYNVAVISEKVMGRHNVSDLVGNVNKLMEEYLRR----H----------NKSCICYGSYSLHLLNPEIEYGDIDIL 193 (467)
T ss_pred HHHHhccccCCCccccccccccHHHHHHHHHHHHHHHh----c----------CCceEEeeceeeeecCCccccCCccee
Confidence 667788876655554445544 55556666666653 2 345789999998887775 899985
Q ss_pred Ee
Q psy18158 127 CV 128 (654)
Q Consensus 127 ~v 128 (654)
=.
T Consensus 194 qT 195 (467)
T PHA02996 194 QT 195 (467)
T ss_pred ee
Confidence 44
No 62
>PRK11072 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed
Probab=34.33 E-value=1.2e+02 Score=37.82 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=35.3
Q ss_pred cCcEEEEeeeeeeCCCCCCCceeEEEecCCC-C--------ChhhHHHHHHHHHhc
Q psy18158 102 VGGKIYTFGSYRLGVHHKGADIDALCVAPRH-V--------DRADYFSSFFEKLKT 148 (654)
Q Consensus 102 ~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~-v--------sr~~ff~~l~~~L~~ 148 (654)
.+.-|+..|-|+-+==.+.||||++++.+.. . +...||..+.+.|.+
T Consensus 153 ~~~aViamGKlG~~ELn~~SDIDLifly~~~~~~~~~~~~~~~~~~f~rl~q~li~ 208 (943)
T PRK11072 153 QPLLILGMGKLGGRELNFSSDIDLIFTYPEHGETQGGRRSIDNQQFFTRLGQRLIK 208 (943)
T ss_pred CCEEEEEeccccCccCCCccCCceEEEeCCCCCCCCCcccchHHHHHHHHHHHHHH
Confidence 4578889999988888999999999998732 1 223788777666544
No 63
>PRK11072 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed
Probab=33.55 E-value=1.2e+02 Score=38.01 Aligned_cols=59 Identities=12% Similarity=0.276 Sum_probs=39.7
Q ss_pred hhhCCCccc-ccccCcEEEEeeeeeeCCCCCCCceeEEEecC----------CCCChhhHHHHHHHHHhc
Q psy18158 90 IAKNIPPTV-AEKVGGKIYTFGSYRLGVHHKGADIDALCVAP----------RHVDRADYFSSFFEKLKT 148 (654)
Q Consensus 90 ~~~~~p~~~-~~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p----------~~vsr~~ff~~l~~~L~~ 148 (654)
...|.|+.. .+..+.-|+.+|-++-+=-+-+||||++.|.. ..++...||..+.+.|.+
T Consensus 667 ~~~G~p~~~~~~~~~~aViamGKlGg~EL~y~SDlDlifvy~~~~~~~t~g~~~~~~~~~~~rl~qrli~ 736 (943)
T PRK11072 667 KRHGEPPHLEGRERGFAVIGYGKLGGKELGYASDLDLVFLHDCPEDAMTDGDKSIDGRQFYLRLAQRIIH 736 (943)
T ss_pred HHhCCCCCccCCCCCEEEEeecCccCCccCCcccceEEEEeecCccccCCCCCcccHHHHHHHHHHHHHH
Confidence 346776431 11234678888887777777799999999885 123445788888777665
No 64
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=31.11 E-value=30 Score=25.81 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=24.5
Q ss_pred hHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Q psy18158 48 TRELAECLKPYNVSETDEELSSRMEVLSKLNN 79 (654)
Q Consensus 48 t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ 79 (654)
+.+|.+.|+.+|+..++.. ..|+++|+.++.
T Consensus 6 ~~~L~~wL~~~gi~~~~~~-~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVPKSA-KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHH
Confidence 4689999999998766665 788888887664
No 65
>PRK14109 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=30.67 E-value=1.6e+02 Score=37.02 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=35.2
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCCCC-----ChhhHHHHHHHHHhc
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPRHV-----DRADYFSSFFEKLKT 148 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~~v-----sr~~ff~~l~~~L~~ 148 (654)
+.-|+.+|+|+-+=-.+.||||++++.+... ....||..+.+.|.+
T Consensus 215 ~~aviamGklG~~EL~~~SDiDLi~ly~~~~~~~~~~~~~~~~rl~q~l~~ 265 (1007)
T PRK14109 215 RLAVIAMGKCGARELNYVSDVDVIFVAEPAEGVDEAAALAVATRLASELMR 265 (1007)
T ss_pred CeEEEEeccccccccCCccCCCEEEEeCCCCCcccccHHHHHHHHHHHHHH
Confidence 5789999999999999999999999986431 124567766666654
No 66
>PRK14108 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=29.84 E-value=2.8e+02 Score=34.97 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=35.2
Q ss_pred cCcEEEEeeeeeeCCCCCCCceeEEEecCCC-------CChhhHHHHHHHHHhc
Q psy18158 102 VGGKIYTFGSYRLGVHHKGADIDALCVAPRH-------VDRADYFSSFFEKLKT 148 (654)
Q Consensus 102 ~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~-------vsr~~ff~~l~~~L~~ 148 (654)
.+.-|+..|-|+-+==.+.||||++.+.+.. ++...||..+.+.|..
T Consensus 185 ~~~aViamGklGg~ELn~~SDiDLifly~~~~~~~~~~~~~~~~~~rl~q~li~ 238 (986)
T PRK14108 185 SGLIVLGMGKLGAGELNYSSDIDLIVFFDETAPILGDPIEAQPFFVRLTRRLVR 238 (986)
T ss_pred CCeEEEeeccccccccCCCCCCceEEEeCCCCCCccccchHHHHHHHHHHHHHH
Confidence 3578999999998888999999999998732 2234678777665544
No 67
>PRK05092 PII uridylyl-transferase; Provisional
Probab=27.75 E-value=3.7e+02 Score=33.51 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=26.6
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCC
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPR 131 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~ 131 (654)
+.-|+..|.|+-|--.|.||||++++.+.
T Consensus 105 ~~alvA~GgyGr~EL~p~SDiDLl~l~~~ 133 (931)
T PRK05092 105 RLAVLAVGGYGRGELAPGSDIDLLFLLPY 133 (931)
T ss_pred ceEEEEecCcCCcccCCCCCceEEEEeCC
Confidence 46899999999999999999999999874
No 68
>PHA02603 nrdC.11 hypothetical protein; Provisional
Probab=25.41 E-value=40 Score=37.04 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.4
Q ss_pred EEEeeeeeeCCCCCCCceeEEEec
Q psy18158 106 IYTFGSYRLGVHHKGADIDALCVA 129 (654)
Q Consensus 106 l~~FGSy~lGv~~p~SDID~l~v~ 129 (654)
+..+||...|+.+|+||+|.--|.
T Consensus 6 ~~~~GShaYG~~tp~SD~D~rGV~ 29 (330)
T PHA02603 6 KGLFGSHLYGTSTPESDVDYKGIF 29 (330)
T ss_pred EEecccceeCCCCCCcccccceee
Confidence 457999999999999999975543
No 69
>PF12633 Adenyl_cycl_N: Adenylate cyclase NT domain; InterPro: IPR024685 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria. This entry represents the N-terminal domain of class-I adenylate cyclases.
Probab=23.55 E-value=1.2e+02 Score=31.27 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=26.9
Q ss_pred EEEEeeeeeeCCCCCCCceeEEEecCCCCChh
Q psy18158 105 KIYTFGSYRLGVHHKGADIDALCVAPRHVDRA 136 (654)
Q Consensus 105 kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~ 136 (654)
-||+-||..+=-.++.||+|+=++....++.+
T Consensus 99 GlY~MGS~gSi~Qs~~SDlDiWvCh~~~L~~~ 130 (204)
T PF12633_consen 99 GLYSMGSTGSIGQSSSSDLDIWVCHDSDLSPE 130 (204)
T ss_pred EEEecCCCccccCCCCCCCeEEEEcCCCCCHH
Confidence 58999999999999999999877666667654
No 70
>PRK14108 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=22.44 E-value=2.2e+02 Score=35.84 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=33.4
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCC-----------CCChhhHHHHHHHHHhc
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPR-----------HVDRADYFSSFFEKLKT 148 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~-----------~vsr~~ff~~l~~~L~~ 148 (654)
+.-|+.+|-++-+=-+-+||||++.|... .++...||..+.+.|.+
T Consensus 701 ~~aViamGKlGg~EL~y~SDlDlifvy~~~~~~~~t~g~~~l~~~~~~~rlaqrli~ 757 (986)
T PRK14108 701 RVAILAMGKLGSRELTAGSDVDLILLYDFDDDAPESDGEKPLDGAQYFARFTQRLIA 757 (986)
T ss_pred CEEEEeeCCccccccCCcccceEEEEeecCccccccCCcccchHHHHHHHHHHHHHH
Confidence 46788888877776777999999998732 12334688888777665
Done!