Query psy18158
Match_columns 654
No_of_seqs 245 out of 715
Neff 5.1
Searched_HMMs 29240
Date Sat Aug 17 00:04:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 9E-121 3E-125 1010.7 48.7 491 22-539 13-511 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 1E-115 4E-120 972.6 48.8 507 25-533 3-529 (530)
3 2ikf_A RNA uridylyl transferas 100.0 3.4E-51 1.1E-55 435.4 16.8 283 27-357 10-348 (353)
4 4fh3_A Poly(A) RNA polymerase 100.0 5.7E-50 2E-54 422.7 24.8 267 60-373 27-348 (349)
5 4e8f_A Poly(A) RNA polymerase 100.0 1.6E-48 5.5E-53 422.3 25.0 306 27-381 24-384 (405)
6 3nyb_A Poly(A) RNA polymerase 100.0 1.2E-47 4E-52 404.2 20.5 268 44-360 18-299 (323)
7 2b4v_A RNA editing complex pro 100.0 5.9E-40 2E-44 360.7 18.4 306 39-363 11-443 (468)
8 3hj4_A Minor editosome-associa 100.0 7.3E-37 2.5E-41 327.7 18.0 279 46-374 6-380 (384)
9 3pq1_A Poly(A) RNA polymerase; 100.0 1.1E-35 3.8E-40 325.8 23.7 233 48-359 135-437 (464)
10 1r89_A TRNA nucleotidyltransfe 99.3 1.4E-10 4.9E-15 126.5 19.0 286 51-418 7-312 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.2 5.7E-09 1.9E-13 110.5 24.6 271 50-349 10-322 (349)
12 4at7_A Interleukin enhancer-bi 97.8 0.002 7E-08 68.6 22.1 265 40-356 20-294 (364)
13 1no5_A Hypothetical protein HI 97.2 0.00079 2.7E-08 60.1 8.0 43 104-147 28-70 (114)
14 4at7_B NF90, interleukin enhan 97.0 0.093 3.2E-06 56.4 22.2 264 58-356 21-326 (383)
15 2rff_A Putative nucleotidyltra 97.0 0.0016 5.3E-08 58.4 7.3 53 67-131 9-61 (111)
16 1wot_A Putative minimal nucleo 96.8 0.0012 4E-08 57.5 5.4 31 104-134 26-56 (98)
17 1ylq_A Putative nucleotidyltra 96.7 0.0025 8.6E-08 55.2 6.2 28 104-131 18-46 (96)
18 4ebj_A Aminoglycoside nucleoti 94.4 0.035 1.2E-06 56.8 5.0 54 66-131 15-68 (272)
19 2fmp_A DNA polymerase beta; nu 94.2 0.21 7.3E-06 52.7 10.7 115 103-252 172-298 (335)
20 2bcq_A DNA polymerase lambda; 93.7 0.37 1.3E-05 50.9 11.4 115 103-252 169-292 (335)
21 1kny_A Kntase, kanamycin nucle 93.5 0.073 2.5E-06 53.7 5.4 28 104-131 32-59 (253)
22 1jaj_A DNA polymerase beta-lik 91.9 0.28 9.5E-06 47.4 6.8 113 97-252 25-142 (174)
23 2ihm_A POL MU, DNA polymerase 91.1 1.1 3.7E-05 47.8 11.0 50 103-153 176-225 (360)
24 3jz0_A Lincosamide nucleotidyl 87.9 0.82 2.8E-05 47.4 6.8 99 59-183 13-116 (287)
25 1jms_A Terminal deoxynucleotid 86.7 2.4 8.3E-05 45.5 9.9 50 103-153 196-247 (381)
26 3b0x_A DNA polymerase beta fam 86.5 4.7 0.00016 45.2 12.6 107 103-253 180-286 (575)
27 1v4a_A Glutamate-ammonia-ligas 78.7 3.8 0.00013 44.7 7.6 47 102-148 153-208 (440)
28 3k7d_A Glutamate-ammonia-ligas 61.6 14 0.00047 41.0 7.3 47 102-148 233-289 (498)
29 2fcl_A Hypothetical protein TM 55.8 33 0.0011 32.4 7.9 70 103-180 33-107 (169)
30 2pbe_A AAD6, aminoglycoside 6- 51.7 12 0.00042 38.4 4.5 75 105-183 25-110 (294)
31 2w9m_A Polymerase X; SAXS, DNA 48.4 25 0.00085 39.4 6.7 94 106-253 182-276 (578)
32 3er9_B Poly(A) polymerase cata 25.2 32 0.0011 37.2 2.5 62 53-128 140-208 (479)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=8.6e-121 Score=1010.69 Aligned_cols=491 Identities=62% Similarity=1.052 Sum_probs=452.1
Q ss_pred CCCCCccccccccccCCCCChHhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccc
Q psy18158 22 QSQAPVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEK 101 (654)
Q Consensus 22 ~~~~~~~~Gvt~Pis~~~Pt~~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~ 101 (654)
.+.++++||||+|||+++|+++|++.+++|+++|++++++||+||.++|++|+++|+++|++|+++++.++|+|+++++.
T Consensus 13 ~~~~~~~~g~~~pis~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~ 92 (514)
T 1q79_A 13 TQPPQKHYGITSPISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIEN 92 (514)
T ss_dssp ------CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTT
T ss_pred cCCcccccCCCCCCcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhccc
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEee
Q psy18158 102 VGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFAR 181 (654)
Q Consensus 102 ~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~ 181 (654)
++++|++||||++|+|+|+||||++|++|.++++++||..++++|++.++++++++|++|+||||||+++||+|||+||+
T Consensus 93 ~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~ 172 (514)
T 1q79_A 93 VGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFAR 172 (514)
T ss_dssp CBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSCHHHHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEE
T ss_pred CCceEEEeeeeccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCccCceEEEecCCcccEEEEEECCeeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHH
Q psy18158 182 LALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAML 261 (654)
Q Consensus 182 l~~~~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiL 261 (654)
++...+|+++++.|+++|++||+.+++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||
T Consensus 173 ~~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lL 252 (514)
T 1q79_A 173 LALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAML 252 (514)
T ss_dssp CSCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHH
T ss_pred CCcccCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHhcCCCCCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChh
Q psy18158 262 VARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSIS 341 (654)
Q Consensus 262 Va~icQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~s 341 (654)
||++||+|||+++++||.+||++|++|||++||+|+.++++.+++++|+|+.+++||+|+|||+||++|++|+|+||+.+
T Consensus 253 Va~~~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~s 332 (514)
T 1q79_A 253 VARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVS 332 (514)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCchhhcCCCcchhhccceeEEEEEeCChhhhhhhHhHHHHHHHHHHHhhhcCCCcc
Q psy18158 342 TRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHIN 421 (654)
Q Consensus 342 Tl~~I~~Ef~Ra~~i~~~i~~~~~~W~~Lfe~~~Ff~~Yk~yl~I~v~a~~~e~~~~w~G~VESrlR~Lv~~LE~~~~i~ 421 (654)
|+++|++||+||+++|+++..++.+|++||++++||.+|+|||+|+|++.+++++.+|.||||||||.|+.+||+.+.|.
T Consensus 333 t~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~~~i~ 412 (514)
T 1q79_A 333 TRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFIT 412 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCcccCCCccccCCCCCCccccccccCCCCCCCCCCcceeeEEEEeEEecc--------cceecchhhhHHHHHH
Q psy18158 422 LAHVNPECYTDTTGVIANGSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFIA--------ANVILNLTYDIQHFTN 493 (654)
Q Consensus 422 ~a~~~P~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fIGL~~~~--------~~~~~DL~~~i~~F~~ 493 (654)
+||+||+.|...+. +. ....|+++|||||+++. .+.++||+..+++|++
T Consensus 413 ~a~~~P~~f~~~~~----------------~~-------~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~ 469 (514)
T 1q79_A 413 LAHVNPQSFPAPKE----------------NP-------DKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYR 469 (514)
T ss_dssp EEEECSCCEECCCS----------------CT-------TSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHH
T ss_pred eeecCccccCCccc----------------cc-------cCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHH
Confidence 99999999985320 00 03579999999999854 2356999999999999
Q ss_pred HHHHhhhhccccCCCcEEEEEEecccccccccccccccccccCCCC
Q psy18158 494 AVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKKTKSG 539 (654)
Q Consensus 494 ~v~~~~~~~~~~~~~m~i~v~~vkr~~L~~~V~~~~lkk~r~~~~~ 539 (654)
.|++|. .+.++|+|+|+||||++||+||++++++|+|+.+..
T Consensus 470 ~~~~~~----~~~~~~~i~v~~vk~~~Lp~~v~~~~~~~~~~~~~~ 511 (514)
T 1q79_A 470 QAINSK----MFEVDMKIAAMHVKRKQLHQLLPSHVLQKKKKHSTE 511 (514)
T ss_dssp HHHHTT----CCCTTCEEEEEEEEHHHHGGGCC-------------
T ss_pred HHhhcc----ccCCCcEEEEEEechHHCchhhcchhccCCCCCCcc
Confidence 998875 456799999999999999999999999999986553
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=1.2e-115 Score=972.60 Aligned_cols=507 Identities=39% Similarity=0.693 Sum_probs=458.8
Q ss_pred CCccccccccccCCCCChHhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCc
Q psy18158 25 APVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGG 104 (654)
Q Consensus 25 ~~~~~Gvt~Pis~~~Pt~~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~ 104 (654)
++++||||+|||+++||++|++.+++|+++|++++++||+||.++|++|+++|+++|++|++++++++|+|+++++.+++
T Consensus 3 ~~~~~g~t~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~ 82 (530)
T 2hhp_A 3 SQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGG 82 (530)
T ss_dssp -CGGGCSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBC
T ss_pred CcccCccCCCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEeeccc
Q psy18158 105 KIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLAL 184 (654)
Q Consensus 105 kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~ 184 (654)
+|++||||++|+|+|+||||++|++|.++++++||..|+++|++.++++++++|++|+||||||+++||+|||+|+++++
T Consensus 83 ~V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~ 162 (530)
T 2hhp_A 83 KIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQ 162 (530)
T ss_dssp EEEEEHHHHHTCCCTTCCEEEEEEECTTCCHHHHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSS
T ss_pred eEEEecccccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHH
Q psy18158 185 KEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVAR 264 (654)
Q Consensus 185 ~~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~ 264 (654)
+++|+++++.++++|++||+.|++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||||+
T Consensus 163 ~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~ 242 (530)
T 2hhp_A 163 PQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR 242 (530)
T ss_dssp SCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHH
T ss_pred ccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCChHHHHHHHHHHHhcCCCCCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHH
Q psy18158 265 ICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRT 344 (654)
Q Consensus 265 icQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~ 344 (654)
+||+||++++++||.+||++|++|||++||+++.++++.+++++|+|+.|.+|+.|+|||+||++|++|+|+||+.+|++
T Consensus 243 ~lQl~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~ 322 (530)
T 2hhp_A 243 ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKK 322 (530)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHH
Confidence 99999999999999999999999999999999988888889999999988888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhcCCCcchhhccceeEEEEEeC-ChhhhhhhHhHHHHHHHHHHHhhhcCCCccee
Q psy18158 345 IMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSV-SAEDQLEWCGLIESKVRHLIGNLERNPHINLA 423 (654)
Q Consensus 345 ~I~~Ef~Ra~~i~~~i~~~~~~W~~Lfe~~~Ff~~Yk~yl~I~v~a~-~~e~~~~w~G~VESrlR~Lv~~LE~~~~i~~a 423 (654)
+|++||+||+++|++++.++.+|.+||++++||.+|+|||+|++++. +++++..|.||||||+|.|+.+||+.+++..|
T Consensus 323 ~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~~~~i~~a 402 (530)
T 2hhp_A 323 VILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKIA 402 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhcccCceee
Confidence 99999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred ccCCCcccCCCc--------cccCCCCCC-------ccccccccCCCCC-CCCCCcceeeEEEEeEEec--ccceecchh
Q psy18158 424 HVNPECYTDTTG--------VIANGSGSP-------EITAEGKEEGGEN-TSPPVSGVASMWFIGLDFI--AANVILNLT 485 (654)
Q Consensus 424 ~~~P~~f~~~~~--------~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~fIGL~~~--~~~~~~DL~ 485 (654)
|+||+.|+.... .++.+.+.. ...+..++.+.++ .......|+++|||||+++ .+++++||+
T Consensus 403 ~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~~~~~~~di~ 482 (530)
T 2hhp_A 403 HPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIENKKEKVDIH 482 (530)
T ss_dssp EECSSCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC----CCCCCCH
T ss_pred ecCCcccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCCCCCceEeCh
Confidence 999999974310 001110000 0000000000000 0001468999999999997 457899999
Q ss_pred hhHHHHHHHHHHhhhhccccCCCcE-EEEEEeccccccccccccccccc
Q psy18158 486 YDIQHFTNAVHWQATQSKMMKDGMK-IEVRHVKKKQLSEYLPAHMLKKD 533 (654)
Q Consensus 486 ~~i~~F~~~v~~~~~~~~~~~~~m~-i~v~~vkr~~L~~~V~~~~lkk~ 533 (654)
.++++|++.|++|..+++ +..|+ |.|+|||+++||+||++++-+|.
T Consensus 483 ~~~~~F~~~~~~~~~~~~--~~~~~~~~v~~v~~~~lp~~v~~~~~~~~ 529 (530)
T 2hhp_A 483 IPCTEFVNLCRSFNEDYG--DHKVFNLALRFVKGYDLPDEVFDENEKRP 529 (530)
T ss_dssp HHHHHHHHHHHHTSTTTT--CSSSEEEEEEEEEGGGCCGGGSCTTSCCC
T ss_pred hHHHHHHHHHHhhhhhcc--cCCcceEEEEEechhhCCHhhccCCCcCC
Confidence 999999999999875222 44589 99999999999999999876553
No 3
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=3.4e-51 Score=435.38 Aligned_cols=283 Identities=20% Similarity=0.293 Sum_probs=225.6
Q ss_pred ccccccccccCCCCChHhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEE
Q psy18158 27 VTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKI 106 (654)
Q Consensus 27 ~~~Gvt~Pis~~~Pt~~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl 106 (654)
..-|++++++.++|+++++ +++|++++++ ..++.+|.++|++++++|++++++. .| +++|
T Consensus 10 ~~~~~~~~~~~~~P~~~~l--~~~l~~~~~~--~~~~~~e~~~r~~~~~~l~~~i~~~---------~p-------~~~v 69 (353)
T 2ikf_A 10 HSSGLVPRGSHMPPSPAVV--GRSLVNSFKQ--FVSKDLHTRHVDATYRLVLDCVAAV---------DP-------LMRL 69 (353)
T ss_dssp -------------CCHHHH--HHHHHHHTTT--TCC-----CCHHHHHHHHHHHHHHH---------CT-------TCEE
T ss_pred ccccceecccCCCCCHHHH--HHHHHHHHHH--hcCChhhHHHHHHHHHHHHHHHHHH---------CC-------CcEE
Confidence 3468999999999999997 7899999986 4578999999999999999999863 22 5899
Q ss_pred EEeeeee-eCCCCCCCceeEEEecCCCCC---------------hhhHHHHHHHHHhcCCCccceEecccCcccEEEEEE
Q psy18158 107 YTFGSYR-LGVHHKGADIDALCVAPRHVD---------------RADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNF 170 (654)
Q Consensus 107 ~~FGSy~-lGv~~p~SDID~l~v~p~~vs---------------r~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~ 170 (654)
++||||+ +|+++|+||||++|+.|.+++ ..+++..+.++|++.+.+.+++.|.+|+||||||++
T Consensus 70 ~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~ 149 (353)
T 2ikf_A 70 YTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKG 149 (353)
T ss_dssp EEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEEC
T ss_pred EEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEc
Confidence 9999997 999999999999998774221 146888899999988888999999999999999999
Q ss_pred -cCeeeeEEEeeccccCCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCc
Q psy18158 171 -DGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNV 249 (654)
Q Consensus 171 -~GI~iDLsfa~l~~~~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~ 249 (654)
.||+|||+|++. +|++.++.|..++...++||.++++||+|||+||||++.
T Consensus 150 ~~~i~~Dis~~n~----------------------------~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~ 201 (353)
T 2ikf_A 150 GGAVDFDITAYRR----------------------------NGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASV 201 (353)
T ss_dssp SSSCEEEEEESCC----------------------------HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTS
T ss_pred CCCcEEEEEecCc----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCC
Confidence 599999999863 689999999999999999999999999999999999999
Q ss_pred C-CccchHHHHHHHHHHHhh------CC------------------------CCChHHHHHHHHHHHh-cCCCCCcee-e
Q psy18158 250 L-GYLGGVSWAMLVARICQL------YP------------------------NAAASTLVCKFFLVFS-QWKWPQPVL-L 296 (654)
Q Consensus 250 ~-G~LGGis~aiLVa~icQl------~P------------------------n~s~~~LL~~FF~~Ys-~wdW~~pV~-L 296 (654)
. |+||||+|+|||+++||. +| +.++++||.+||+||+ +|||.++|+ +
T Consensus 202 ~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi 281 (353)
T 2ikf_A 202 IGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISL 281 (353)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECS
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEc
Confidence 9 999999999999999985 23 2457999999999999 799999975 3
Q ss_pred cCCCCCCCCCcccCCC------CCCCCCCCceeeeCCCCCCCCcCCccChhhHHHHHHHHHHHHHHH
Q psy18158 297 KKPDNVNLGFPVWDPR------VNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTIS 357 (654)
Q Consensus 297 ~~~~~~~l~~~vWdp~------~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~I~~Ef~Ra~~i~ 357 (654)
+.+.......+.|++. .+..++.+.|+|+||++|++|+|++|+.+++..|++||+||+++|
T Consensus 282 ~~~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 282 NRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp SSSSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3322111122468742 222335678999999999999999999999999999999999885
No 4
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=5.7e-50 Score=422.70 Aligned_cols=267 Identities=21% Similarity=0.287 Sum_probs=222.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHH
Q psy18158 60 VSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYF 139 (654)
Q Consensus 60 ~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff 139 (654)
+-||+||.++|++++++|+++|+++. | +++|++||||++|+++|+||||++|+.|.....+.++
T Consensus 27 ~~pt~~e~~~R~~~~~~l~~~i~~~~---------p-------~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~ 90 (349)
T 4fh3_A 27 IKISDKEFKEKRAALDTLRLCLKRIS---------P-------DAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIA 90 (349)
T ss_dssp HBCCHHHHHHHHHHHHHHHHHHHTTC---------T-------TCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHC---------C-------CCEEEEEeeccCCCCCCCCCEEEEEecCCCCChHHHH
Confidence 55999999999999999999998532 3 5899999999999999999999999999988888887
Q ss_pred HHHHHHHhcCCCccceEecccCcccEEEEEEc-------CeeeeEEEeeccccCCCCcccccchhhhhchhhhhhhccch
Q psy18158 140 SSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFD-------GIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNG 212 (654)
Q Consensus 140 ~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~-------GI~iDLsfa~l~~~~iP~~l~l~~d~lL~~lD~~s~rSLNG 212 (654)
..+...+.+ ...+++.|.+|+||||||.+. |+.|||+|++ .+|
T Consensus 91 ~~~~~~~~~--~~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~----------------------------~~g 140 (349)
T 4fh3_A 91 LQFYEELIA--EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNN----------------------------RLA 140 (349)
T ss_dssp HHHHHHHHH--TTEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESC----------------------------HHH
T ss_pred HHHHHHHHh--hcccceEeeeeeeeeEEEEecccccccccceeecCcCc----------------------------chH
Confidence 777666654 345778899999999999973 7999999876 368
Q ss_pred hhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHHHHhh------CCC---------------
Q psy18158 213 CRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQL------YPN--------------- 271 (654)
Q Consensus 213 ~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~icQl------~Pn--------------- 271 (654)
++.++.|.++++..++||.++++||+|||+||||++..|+||||+|+|||+++||. +|+
T Consensus 141 ~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~ 220 (349)
T 4fh3_A 141 IHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGF 220 (349)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTE
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCc
Confidence 99999999999999999999999999999999999999999999999999999985 333
Q ss_pred -----------------CChHHHHHHHHHHHh-cCCCCCceeecCCCCCCC--CCcccC-------CCCCCCCCCCceee
Q psy18158 272 -----------------AAASTLVCKFFLVFS-QWKWPQPVLLKKPDNVNL--GFPVWD-------PRVNVADRYHLMPI 324 (654)
Q Consensus 272 -----------------~s~~~LL~~FF~~Ys-~wdW~~pV~L~~~~~~~l--~~~vWd-------p~~~~~dr~~~MpI 324 (654)
.++++||.+||+||+ +|||+++|+.....++.+ ..+.|. +..+..+..+.|+|
T Consensus 221 ~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~I 300 (349)
T 4fh3_A 221 DVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAI 300 (349)
T ss_dssp ECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC---------------CCSSCB
T ss_pred ccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCcccccCCCCceEEE
Confidence 368999999999998 699999976443322221 112343 33333344578999
Q ss_pred eCCCCCCCCcCCccChhhHHHHHHHHHHHHHHHHHhhcCCCCchhhcCC
Q psy18158 325 ITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFET 373 (654)
Q Consensus 325 itP~~P~~Nsa~nVs~sTl~~I~~Ef~Ra~~i~~~i~~~~~~W~~Lfe~ 373 (654)
+||++|++|+|++|+..++..|++||+||+++|++.. ...+|+.|||.
T Consensus 301 eDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 301 EDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp BCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred ECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 9999999999999999999999999999999987643 34689999985
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=1.6e-48 Score=422.33 Aligned_cols=306 Identities=18% Similarity=0.250 Sum_probs=241.2
Q ss_pred ccccccccccCCCCChHhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEE
Q psy18158 27 VTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKI 106 (654)
Q Consensus 27 ~~~Gvt~Pis~~~Pt~~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl 106 (654)
...|..++-|-....+.--+++++|.++++. +-||+||.++|++++.+|+++++++. | +++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~--i~Pt~eE~~~R~~v~~~l~~~i~~~~---------p-------~~~v 85 (405)
T 4e8f_A 24 KNLHISKSCSYQKVPNSHKEFTKFCYEVYNE--IKISDKEFKEKRAALDTLRLCLKRIS---------P-------DAEL 85 (405)
T ss_dssp --------------CCSCHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC---------T-------TCEE
T ss_pred hcccccccCccccCchHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC---------C-------CCEE
Confidence 3467777766665556666788888888874 78999999999999999999999753 2 4899
Q ss_pred EEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEE---c----CeeeeEEE
Q psy18158 107 YTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNF---D----GIEIDMLF 179 (654)
Q Consensus 107 ~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~---~----GI~iDLsf 179 (654)
++|||+++|+++|+||||++|+.|.....++++..+.+.|++. ..+++.|.+|+||||||.+ . ||+|||+|
T Consensus 86 ~~fGS~~~G~~~~~SDiDl~v~~~~~~~~~~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~ 163 (405)
T 4e8f_A 86 VAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGF 163 (405)
T ss_dssp EEESHHHHTCCBSSCCEEEEEECCC---CTTHHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEE
T ss_pred EEEeeccCCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEee
Confidence 9999999999999999999999988666667899999999986 6789999999999999995 4 99999999
Q ss_pred eeccccCCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHH
Q psy18158 180 ARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWA 259 (654)
Q Consensus 180 a~l~~~~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~a 259 (654)
++. +|++.+..|..++...++||.++++||+|||+||||++..|+||||+|+
T Consensus 164 ~n~----------------------------~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~ 215 (405)
T 4e8f_A 164 NNR----------------------------LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYV 215 (405)
T ss_dssp SCH----------------------------HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHH
T ss_pred ccc----------------------------chHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHH
Confidence 863 4677788888887778999999999999999999999999999999999
Q ss_pred HHHHHHH-hh-----CCC--------------------------------CChHHHHHHHHHHHh-cCCCCCceeecCCC
Q psy18158 260 MLVARIC-QL-----YPN--------------------------------AAASTLVCKFFLVFS-QWKWPQPVLLKKPD 300 (654)
Q Consensus 260 iLVa~ic-Ql-----~Pn--------------------------------~s~~~LL~~FF~~Ys-~wdW~~pV~L~~~~ 300 (654)
|||+++| |. +|+ .++++||..||+||+ +|||.+.|+.....
T Consensus 216 lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~ 295 (405)
T 4e8f_A 216 LMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRP 295 (405)
T ss_dssp HHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSST
T ss_pred HHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEecC
Confidence 9999999 73 232 479999999999999 89999987543312
Q ss_pred CCCCC--CcccCCCCC-------CCCCCCceeeeCCCCCCCCcCCccChhhHHHHHHHHHHHHHHHHHhhcCCCCchhhc
Q psy18158 301 NVNLG--FPVWDPRVN-------VADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLF 371 (654)
Q Consensus 301 ~~~l~--~~vWdp~~~-------~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~I~~Ef~Ra~~i~~~i~~~~~~W~~Lf 371 (654)
++.+. .+.|.+..+ ..++.+.|+|+||++|.+|+|++|+..++..|++||+||++++.+... +.+|++||
T Consensus 296 g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~-~~~w~~Lf 374 (405)
T 4e8f_A 296 DGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY-PIPYDSLF 374 (405)
T ss_dssp TCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS-SCCGGGGG
T ss_pred CcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc-CCCHHHHh
Confidence 22222 257876521 112457899999999999999999999999999999999999776432 67999999
Q ss_pred CCCcchhhcc
Q psy18158 372 ETPNFFTKYR 381 (654)
Q Consensus 372 e~~~Ff~~Yk 381 (654)
+++++..+..
T Consensus 375 ~~~~~~~~~~ 384 (405)
T 4e8f_A 375 EEAPIPPRRQ 384 (405)
T ss_dssp SCCCCC----
T ss_pred CcCCCccccc
Confidence 9999998643
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-47 Score=404.16 Aligned_cols=268 Identities=21% Similarity=0.288 Sum_probs=228.9
Q ss_pred hHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCce
Q psy18158 44 DLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADI 123 (654)
Q Consensus 44 dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDI 123 (654)
--.+++||.++.+ .+.||+||.++|++++++|+++++++. | +++|++|||+++|+++|+|||
T Consensus 18 ~~~L~~Ei~~f~~--~i~Pt~eE~~~R~~~~~~l~~~~~~~~---------p-------~~~v~~fGS~~~g~~~~~SDi 79 (323)
T 3nyb_A 18 SDWLTFEIKDFVA--YISPSREEIEIRNQTISTIREAVKQLW---------P-------DADLHVFGSYSTDLYLPGSDI 79 (323)
T ss_dssp HHHHHHHHHHHHH--HTSCCHHHHHHHHHHHHHHHHHHHTTC---------T-------TCCEEEESTTTTTCCCTTSCE
T ss_pred HHHHHHHHHHHHH--HhCcCHHHHHHHHHHHHHHHHHHHHHC---------C-------CCEEEEeCccccCCCCCCCCc
Confidence 3346777777766 478999999999999999999998643 2 478999999999999999999
Q ss_pred eEEEecCCCCC-hhhHHHHHHHHHhcCCCccceEecccCcccEEEEEE--cCeeeeEEEeeccccCCCCcccccchhhhh
Q psy18158 124 DALCVAPRHVD-RADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNF--DGIEIDMLFARLALKEIPDDMDLRDDMLLK 200 (654)
Q Consensus 124 D~l~v~p~~vs-r~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~--~GI~iDLsfa~l~~~~iP~~l~l~~d~lL~ 200 (654)
|++|+.|.... ..+++..+.+.|++.+.+++++.|.+|+||||||++ .||+|||+|++.
T Consensus 80 Dl~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~------------------ 141 (323)
T 3nyb_A 80 DCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERT------------------ 141 (323)
T ss_dssp EEEECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCS------------------
T ss_pred eEEEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecCc------------------
Confidence 99999997542 346888999999998889999999999999999996 699999999862
Q ss_pred chhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHHHHhhCCC---------
Q psy18158 201 NLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPN--------- 271 (654)
Q Consensus 201 ~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~icQl~Pn--------- 271 (654)
+|++.++.|.++++..++||.++++||+|||+||||++..|+||||+|+|||+++||++|+
T Consensus 142 ----------~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~ 211 (323)
T 3nyb_A 142 ----------NGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPK 211 (323)
T ss_dssp ----------STTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGG
T ss_pred ----------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCcc
Confidence 6899999999999999999999999999999999999999999999999999999999985
Q ss_pred CChHHHHHHHHHHHh-cCCCCCcee-ecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHHHHHHH
Q psy18158 272 AAASTLVCKFFLVFS-QWKWPQPVL-LKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEE 349 (654)
Q Consensus 272 ~s~~~LL~~FF~~Ys-~wdW~~pV~-L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~I~~E 349 (654)
.++++||.+||+||+ +|||++.++ ++......+..+.|... +...+.+.|+|+||++|++|+|+++ ..++.|++|
T Consensus 212 ~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~ 288 (323)
T 3nyb_A 212 DNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKA 288 (323)
T ss_dssp GCHHHHHHHHHHHHHHTCCTTTEEEEESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHH
T ss_pred ccHHHHHHHHHHHhccccCCCCcEEEEecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHH
Confidence 468999999999999 999999765 33221112233567542 2223457899999999999999985 468899999
Q ss_pred HHHHHHHHHHh
Q psy18158 350 FKQGKTISEDI 360 (654)
Q Consensus 350 f~Ra~~i~~~i 360 (654)
|++|++++.+-
T Consensus 289 F~~A~~~L~~~ 299 (323)
T 3nyb_A 289 FAGAFDLLTNR 299 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=5.9e-40 Score=360.69 Aligned_cols=306 Identities=17% Similarity=0.245 Sum_probs=217.3
Q ss_pred CCChHhHHh-hHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeee-eeCC
Q psy18158 39 PPNQLDLQR-TRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSY-RLGV 116 (654)
Q Consensus 39 ~Pt~~dl~~-t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy-~lGv 116 (654)
+|++..++. ...+.+.... .-+++++.+.|+.++++|+.++++|. | +++|++|||| .+|+
T Consensus 11 ~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~l~~~v~~~~---------p-------~a~v~~FGS~v~~Gl 72 (468)
T 2b4v_A 11 NPSPDHYAVWGKAIMAENNR--RVGPEHMFRTAIRAQQQLQGLADKWT---------P-------DAKVYCCGSMVTYGQ 72 (468)
T ss_dssp CCCHHHHHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC---------T-------TCEEEEETHHHHHSS
T ss_pred CCChHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHC---------C-------CcEEEEeeCchhcCC
Confidence 555655543 2333333332 23788999999999999999999875 2 5999999999 7999
Q ss_pred CCCCCceeEEEecCCCCChh--hH--HHHHHHHHhcC-CC--ccceEecccCcccEEEEEEc------------------
Q psy18158 117 HHKGADIDALCVAPRHVDRA--DY--FSSFFEKLKTV-DE--VTDLRAVEEAFVPVIKMNFD------------------ 171 (654)
Q Consensus 117 ~~p~SDID~l~v~p~~vsr~--~f--f~~l~~~L~~~-~~--v~~l~~I~~A~VPIIKf~~~------------------ 171 (654)
++|+||||++|+.+...... .. ...+.+.|++. ++ +.++++|.+|+||||||++.
T Consensus 73 ~lp~SDiDl~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~ 152 (468)
T 2b4v_A 73 MERGSDLDLACMFDDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEED 152 (468)
T ss_dssp CBTTCCEEEEEECSSSSCCHHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHH
T ss_pred CCCCCceeEEEecCCCCccchhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccc
Confidence 99999999999987422211 11 23588889886 44 68999999999999999821
Q ss_pred ----------------------------------------C--eeeeEEEeec-----cccCCCCc--cc--ccchhhhh
Q psy18158 172 ----------------------------------------G--IEIDMLFARL-----ALKEIPDD--MD--LRDDMLLK 200 (654)
Q Consensus 172 ----------------------------------------G--I~iDLsfa~l-----~~~~iP~~--l~--l~~d~lL~ 200 (654)
| ..+|++|.+. ++...|+. +. +.++-...
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 232 (468)
T 2b4v_A 153 RKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRD 232 (468)
T ss_dssp HHHTEEEEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEE
T ss_pred cccccccccccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccc
Confidence 1 2255677652 11222221 00 01111111
Q ss_pred chh------------hhhhhccchhhhHHHHHHhcCChhh-HHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHHHHh
Q psy18158 201 NLD------------QKCVRSLNGCRVTDEILRLVPNIEN-FRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQ 267 (654)
Q Consensus 201 ~lD------------~~s~rSLNG~Rv~d~Ilrlvp~~~~-Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~icQ 267 (654)
.+| +.|.. .+|++.++.|..++-.+++ ||.|+++||+|||+||||++..|+||||+|+|||++++|
T Consensus 233 ~ld~rf~~~~~gi~~DISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ 311 (468)
T 2b4v_A 233 VLDVRFVPEMFMYRWDISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLL 311 (468)
T ss_dssp ESCTTSCCGGGSSCEEEESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHH
T ss_pred cccccccccccceEEEEecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHH
Confidence 111 13444 7899999999988888889 999999999999999999999999999999999999998
Q ss_pred hC-----------------CC------------CChHHHHHHHHHHHh-cCCCCCcee-ecCCCCCCCCCcccCCCCCC-
Q psy18158 268 LY-----------------PN------------AAASTLVCKFFLVFS-QWKWPQPVL-LKKPDNVNLGFPVWDPRVNV- 315 (654)
Q Consensus 268 l~-----------------Pn------------~s~~~LL~~FF~~Ys-~wdW~~pV~-L~~~~~~~l~~~vWdp~~~~- 315 (654)
.. |+ .++++||.+||+||+ +|||.+.|+ ++.+.......+.|....+.
T Consensus 312 ~~~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g~~~~K~~~~w~~~~n~~ 391 (468)
T 2b4v_A 312 VTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNKK 391 (468)
T ss_dssp HTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSSCEEHHHHTCCCGGGEE
T ss_pred hcCcCCCCCcccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCCcceeccccccccccccc
Confidence 64 11 258999999999999 899999875 43322111122457643221
Q ss_pred CCCCCceeeeCCCCC----CCCcCCccChhhHHHHHHHHHHHHHHHHHhhcC
Q psy18158 316 ADRYHLMPIITPAYP----QQNSTFNVSISTRTIMQEEFKQGKTISEDIYNG 363 (654)
Q Consensus 316 ~dr~~~MpIitP~~P----~~Nsa~nVs~sTl~~I~~Ef~Ra~~i~~~i~~~ 363 (654)
....+.|+|+||++| .+|+|++|+..+++.|++||++|+++|++...+
T Consensus 392 ~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~~~ 443 (468)
T 2b4v_A 392 GTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFLPT 443 (468)
T ss_dssp TTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred CCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 111246999999999 999999999999999999999999999875433
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=7.3e-37 Score=327.69 Aligned_cols=279 Identities=14% Similarity=0.173 Sum_probs=213.4
Q ss_pred HhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCceeE
Q psy18158 46 QRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDA 125 (654)
Q Consensus 46 ~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDID~ 125 (654)
+.++|+.++.+ .+.||++|.+.|++++.+|++++++- .| +++|++|||+.+|+++|+||||+
T Consensus 6 ~lt~EI~dFy~--~i~PT~eE~~~R~~vv~~l~~ii~~~---------~p-------~~~v~~FGS~~tgl~lp~SDiDl 67 (384)
T 3hj4_A 6 EFIRGMMAHYR--ASLPPPEHSVVIHELQKRVLDIGMLA---------VN-------KAHVELFGSHVSGFCTPHSDADI 67 (384)
T ss_dssp HHHHHHHHHHH--HHSCCTTHHHHHHHHHHHHHHHHHHH---------ST-------TCEEEEESHHHHSCCCTTCCEEE
T ss_pred HHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHH---------CC-------CcEEEEeeeccCCCCCCCCCeeE
Confidence 56777777776 47799999999999999999999853 22 58999999999999999999999
Q ss_pred EEecCCCC------Chhh--HHHH---HHHHHhcCCCccceEecccCcccEEEEEE--cCeeeeEEEeeccccCCCCccc
Q psy18158 126 LCVAPRHV------DRAD--YFSS---FFEKLKTVDEVTDLRAVEEAFVPVIKMNF--DGIEIDMLFARLALKEIPDDMD 192 (654)
Q Consensus 126 l~v~p~~v------sr~~--ff~~---l~~~L~~~~~v~~l~~I~~A~VPIIKf~~--~GI~iDLsfa~l~~~~iP~~l~ 192 (654)
++..+..- .+.+ .... +.+.+. ..+++.+. |.+|+||||||.. .|++|||+|++.
T Consensus 68 vI~~~~~~~~~~~~~~~~~~~~lrll~L~k~~~-~~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~---------- 135 (384)
T 3hj4_A 68 SLTYRNFSPWLQGMERVDEQNNKRMTRFGKEAS-AMGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNI---------- 135 (384)
T ss_dssp EEECTTCCGGGTTCHHHHHHHHHHHHHHHHHHH-HHTCEEEE-EECSSSCEEEEECTTTCCEEEEEECCH----------
T ss_pred EEecCCCcccccccchhhHHHHHHHHHHHhhcc-cCCeeEEe-ecCcccCEEEEEEcCCCeEEEEEeccc----------
Confidence 99876531 1111 1111 122221 13566665 4599999999997 599999999863
Q ss_pred ccchhhhhchhhhhhhccchhhhHHHHHHhcCC-hhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHHHHhhC--
Q psy18158 193 LRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPN-IENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLY-- 269 (654)
Q Consensus 193 l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~-~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~icQl~-- 269 (654)
+|++.+..|..+... .++||.++++||+||++|||+++..|+||||+|+|||+++||..
T Consensus 136 ------------------~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~v 197 (384)
T 3hj4_A 136 ------------------GGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGL 197 (384)
T ss_dssp ------------------HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHTS
T ss_pred ------------------chHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCCC
Confidence 477778777777766 45799999999999999999999999999999999999999963
Q ss_pred -CCC------------------------------------ChHHH----HHHHHHHHhcCCCCCce-eecCCCCCC----
Q psy18158 270 -PNA------------------------------------AASTL----VCKFFLVFSQWKWPQPV-LLKKPDNVN---- 303 (654)
Q Consensus 270 -Pn~------------------------------------s~~~L----L~~FF~~Ys~wdW~~pV-~L~~~~~~~---- 303 (654)
|+. ++++| |..||+||+.|||.+.| .|+.+....
T Consensus 198 LP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~ 277 (384)
T 3hj4_A 198 LPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYE 277 (384)
T ss_dssp SCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHH
T ss_pred CCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccc
Confidence 221 37788 99999999999999876 455554320
Q ss_pred ------------CCCcccCCCC------CC----------------CCCCCceeeeCCCCCCCCcCCccChhhHHHHHHH
Q psy18158 304 ------------LGFPVWDPRV------NV----------------ADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEE 349 (654)
Q Consensus 304 ------------l~~~vWdp~~------~~----------------~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~I~~E 349 (654)
-..+.|.... .+ .....++.|+| +...+|+|+.|+.+....|+.|
T Consensus 278 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 356 (384)
T 3hj4_A 278 RVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQE 356 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHH
T ss_pred hhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHHH
Confidence 0124564110 01 12245799999 9999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCchhhcCCC
Q psy18158 350 FKQGKTISEDIYNGKTMWDKLFETP 374 (654)
Q Consensus 350 f~Ra~~i~~~i~~~~~~W~~Lfe~~ 374 (654)
|+||++|+.+- +++...+++|...
T Consensus 357 ~~~~~~~~~~~-~~~~~~~~~~~~~ 380 (384)
T 3hj4_A 357 FNRLREMLIDK-ESELKFDEVFRES 380 (384)
T ss_dssp HHHHHHHHTTT-GGGCCHHHHTCCC
T ss_pred HHHHHHHHhcc-cccccHHHHhhhc
Confidence 99999996542 3456777877544
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=325.77 Aligned_cols=233 Identities=17% Similarity=0.220 Sum_probs=187.6
Q ss_pred hHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCceeEEE
Q psy18158 48 TRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALC 127 (654)
Q Consensus 48 t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDID~l~ 127 (654)
++++.++.+ .+-||++|.+.|..++++|++++++. .| +++|++|||+.+|+++|+||||+++
T Consensus 135 ~~EI~~f~~--~i~PT~eE~~~R~~vv~~le~ii~~~---------fP-------~a~V~~FGS~~tGL~lp~SDIDlvl 196 (464)
T 3pq1_A 135 DDQLNTLLK--EFQLTEENTKLRYLTCSLIEDMAAAY---------FP-------DCIVRPFGSSVNTFGKLGCDLDMFL 196 (464)
T ss_dssp HHHHHHHHH--HHBCCHHHHHHHHHHHHHHHHHHTTT---------ST-------TCEEEEEGGGTSSCCBTTCCEEEEE
T ss_pred HHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHH---------CC-------CCEEEEeCCCccCCCCCCCCeEEEE
Confidence 344555444 35699999999999999999999752 23 5899999999999999999999987
Q ss_pred ecCCCCC----------------------h---hhHHHHHHHHHhcC-CCccceEecccCcccEEEEEEc--CeeeeEEE
Q psy18158 128 VAPRHVD----------------------R---ADYFSSFFEKLKTV-DEVTDLRAVEEAFVPVIKMNFD--GIEIDMLF 179 (654)
Q Consensus 128 v~p~~vs----------------------r---~~ff~~l~~~L~~~-~~v~~l~~I~~A~VPIIKf~~~--GI~iDLsf 179 (654)
..+..-. | ...+..+.+.|++. +++.+++.|.+|+||||||... ||+|||+|
T Consensus 197 ~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~ 276 (464)
T 3pq1_A 197 DLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTT 276 (464)
T ss_dssp ECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEEC
T ss_pred ecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEec
Confidence 6543100 1 13566677778774 6889999999999999999995 99999999
Q ss_pred eeccccCCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCc-cchHHH
Q psy18158 180 ARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGY-LGGVSW 258 (654)
Q Consensus 180 a~l~~~~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~-LGGis~ 258 (654)
++. +|++.+..|..+...+++||.++++||+||++|||+++..|+ ||||+|
T Consensus 277 nn~----------------------------~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL 328 (464)
T 3pq1_A 277 NNR----------------------------IALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSL 328 (464)
T ss_dssp SCT----------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHH
T ss_pred CCC----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHH
Confidence 873 588889888888888899999999999999999999999997 999999
Q ss_pred HHHHHHHHhhCC-----C------------------------------------CChHHHHHHHHHHHhcCCCCCceeec
Q psy18158 259 AMLVARICQLYP-----N------------------------------------AAASTLVCKFFLVFSQWKWPQPVLLK 297 (654)
Q Consensus 259 aiLVa~icQl~P-----n------------------------------------~s~~~LL~~FF~~Ys~wdW~~pV~L~ 297 (654)
+|||++++|... + .++++||..||+||++|||.+.|+
T Consensus 329 ~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vI-- 406 (464)
T 3pq1_A 329 TMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXX-- 406 (464)
T ss_dssp HHHHHHHHHSCC-------CCSHHHHTTC---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCC--
T ss_pred HHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCccccc--
Confidence 999999999742 1 257999999999999999998652
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHHHHHHHHHHHHHHHHH
Q psy18158 298 KPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISED 359 (654)
Q Consensus 298 ~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~I~~Ef~Ra~~i~~~ 359 (654)
.| ..|++.||+.+.+..++.|+++|+.||+.
T Consensus 407 -------------------------sI------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~ 437 (464)
T 3pq1_A 407 -------------------------XX------XXXXXXXVSQSQLQKFVDLARESAWILQQ 437 (464)
T ss_dssp -------------------------CC------C-------CHHHHHHHHHHHHHHHHHHHC
T ss_pred -------------------------cc------ccccccccCHHHHHHHHHHHHHHHHHHhh
Confidence 12 78999999999999999999999999873
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.25 E-value=1.4e-10 Score=126.46 Aligned_cols=286 Identities=16% Similarity=0.183 Sum_probs=179.4
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCC-CceeEEEec
Q psy18158 51 LAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKG-ADIDALCVA 129 (654)
Q Consensus 51 L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~-SDID~l~v~ 129 (654)
+.++|+ .+-|+++|.+.=+.+.+.|...+++ . +.+++..|||+-|.+++| ||||+.++.
T Consensus 7 ~~~~l~--~i~P~~~E~~~~~~~~~~I~~~L~~-~-----------------~~~v~~~GS~AkgT~Lrg~sDIDIfv~f 66 (437)
T 1r89_A 7 LEKALE--LVIPDEEEVRKGREAEEELRRRLDE-L-----------------GVEYVFVGSYARNTWLKGSLEIDVFLLF 66 (437)
T ss_dssp HHHHHH--HHSCCHHHHHHHHHHHHHHHHHHHH-H-----------------TCCEEEEHHHHHTCCCTTCCEEEEEEEE
T ss_pred HHHHHH--hhCCCHHHHHHHHHHHHHHHHHHHh-C-----------------CCeEEEeccccCCCcCCCCCCceEEEEc
Confidence 344444 3569999988877777777777765 1 257889999999999998 999999999
Q ss_pred CCCCChhhHHH----HHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEeeccccCCCCcccccch-hhhhchhh
Q psy18158 130 PRHVDRADYFS----SFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDD-MLLKNLDQ 204 (654)
Q Consensus 130 p~~vsr~~ff~----~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~iP~~l~l~~d-~lL~~lD~ 204 (654)
|...+++++-. .+.++|.+ . .+.-|.-|-+...+.|+++|+.=|-- +.+. .+....|-
T Consensus 67 ~~~~~~e~l~~~~l~~~~e~l~~------~-~~~ya~hpyV~~~f~g~~vDVVP~y~----------v~~g~~~~tavDr 129 (437)
T 1r89_A 67 PEEFSKEELRERGLEIGKAVLDS------Y-EIRYAEHPYVHGVVKGVEVDVVPCYK----------LKEPKNIKSAVDR 129 (437)
T ss_dssp CTTSCHHHHHHHHHHHHHHHSSS------E-EEEESSSEEEEEEETTEEEEEEEEEC----------CSSSSCCCSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH------h-hhhccCCceEEEEecceEEEEEEEEE----------ccCCccccccccC
Confidence 98766655432 23333332 2 24566678888888999999985521 1110 01000000
Q ss_pred hhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcC--cCCccchHHHHHHHHHHHhhCCCCChHHHHHHHH
Q psy18158 205 KCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSN--VLGYLGGVSWAMLVARICQLYPNAAASTLVCKFF 282 (654)
Q Consensus 205 ~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn--~~G~LGGis~aiLVa~icQl~Pn~s~~~LL~~FF 282 (654)
...-++++.+...+ ++..+|++|.|.|.-|+|++ ..+.++||.+-||++++ .+-..+|..++
T Consensus 130 -------tp~H~~fv~~r~~~---~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~~~ 193 (437)
T 1r89_A 130 -------TPFHHKWLEGRIKG---KENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKNAR 193 (437)
T ss_dssp -------HHHHHHHHTTTSTT---CHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHHHT
T ss_pred -------cHHHHHHHHhhhhh---hhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHHHH
Confidence 01123344333332 88999999999999999987 45779999999999993 23344444443
Q ss_pred HHHhcCCCCCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHHHHHHHHHHHHHHHHHhhc
Q psy18158 283 LVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYN 362 (654)
Q Consensus 283 ~~Ys~wdW~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~~I~~Ef~Ra~~i~~~i~~ 362 (654)
+|..++.+.-. . .. ......+.|+||.+|..|+|.++|..++..+..+-+...+-
T Consensus 194 ------~w~~~~~Id~~-~--------~~----~~~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~~------ 248 (437)
T 1r89_A 194 ------RWTRRTVIDVA-K--------GE----VRKGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFMEA------ 248 (437)
T ss_dssp ------TCCTTEEEEGG-G--------TE----EEECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHHHS------
T ss_pred ------HhCCCeEEecC-C--------Cc----ccCCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHHhC------
Confidence 56556644211 0 00 00123578999999999999999998887777655444321
Q ss_pred CCCCchhhcCCCc--------ch---h-hccceeEEEEEeCChhhhhhhHhHHHHHHHHHHHhhhcCC
Q psy18158 363 GKTMWDKLFETPN--------FF---T-KYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNP 418 (654)
Q Consensus 363 ~~~~W~~Lfe~~~--------Ff---~-~Yk~yl~I~v~a~~~e~~~~w~G~VESrlR~Lv~~LE~~~ 418 (654)
+=.++|.|.+ +- . +=.+.+.|.....+.-+ ....|-++==.+.|...||+..
T Consensus 249 ---ps~~~f~~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~-D~l~pQl~k~~~~i~~~L~~~g 312 (437)
T 1r89_A 249 ---PSLGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVD-DNLYPQLERASRKIFEFLEREN 312 (437)
T ss_dssp ---CCGGGGSCCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---ccHHhcCCCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCc-ccchHHHHHHHHHHHHHHHHCC
Confidence 2233443321 11 0 11245666665444323 3445777777777888888754
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.15 E-value=5.7e-09 Score=110.53 Aligned_cols=271 Identities=13% Similarity=0.160 Sum_probs=143.2
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccC-cEEEEeeeeeeCCCCCC-CceeEEE
Q psy18158 50 ELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVG-GKIYTFGSYRLGVHHKG-ADIDALC 127 (654)
Q Consensus 50 ~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~-~kl~~FGSy~lGv~~p~-SDID~l~ 127 (654)
+|.+++.+ .+-|++++.+.=+.+++.|...+++- +.+.+..+ .. .+++.+|||+-|.++++ ||||+++
T Consensus 10 ~l~~fi~~-~l~p~~~~~~~i~~~~~~I~~~L~~~----~~~~~~~~-----~~v~~v~~~GSyargT~lrg~sDiDlvV 79 (349)
T 1px5_A 10 DLDKFIED-HLLPNTXFRTQVKEAIDIVXRFLKER----CFQGTADP-----VRVSKVVKGGSSGKGTTLRGRSDADLVV 79 (349)
T ss_dssp GHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHHH----TTCC---C-----CEEEEEEEEEEC--------CEEEEEEE
T ss_pred HHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhh----hcccccCC-----cceEEEEEecCcCCCcccCCCCceeEEE
Confidence 45566542 45689888876666666666666542 11100000 11 37889999999999996 9999999
Q ss_pred ecCCCCChh-------hHHHHHHHHHhcC---CCcc-ceEec-ccCccc-EEEEEE------cCeeeeEEEeeccccCCC
Q psy18158 128 VAPRHVDRA-------DYFSSFFEKLKTV---DEVT-DLRAV-EEAFVP-VIKMNF------DGIEIDMLFARLALKEIP 188 (654)
Q Consensus 128 v~p~~vsr~-------~ff~~l~~~L~~~---~~v~-~l~~I-~~A~VP-IIKf~~------~GI~iDLsfa~l~~~~iP 188 (654)
+.+..-+.+ .+...+.+.|.+. ..+. ..... ..-..| -+.|.+ .|++|||+=|--.+..+.
T Consensus 80 ~l~~~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~ 159 (349)
T 1px5_A 80 FLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWT 159 (349)
T ss_dssp EEESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCC
T ss_pred EECCCCchhhHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcccc
Confidence 888643332 3444455555531 1221 12111 011345 266666 479999887643211110
Q ss_pred Ccccccchh---hhhch---hhhhhhccc-hhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHH
Q psy18158 189 DDMDLRDDM---LLKNL---DQKCVRSLN-GCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAML 261 (654)
Q Consensus 189 ~~l~l~~d~---lL~~l---D~~s~rSLN-G~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiL 261 (654)
..-....+. ++... ......+.+ --.-.+++.. ....++.++|++|+|-++.+. ....+.+.||.+-+|
T Consensus 160 ~~~~~~~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~---~~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~lELL 235 (349)
T 1px5_A 160 PGYKPNPEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRN---RPTKLKSLIRLVKHWYQTCKK-THGNKLPPQYALELL 235 (349)
T ss_dssp TTSCCCHHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHHHHH
T ss_pred cccCCChHHHHHHHhhccccccCccchhcCHHHHHHHHHh---CcHHHHHHHHHHHHHHHHhhh-cccCCCCChHHHHHH
Confidence 000000010 11110 000000000 0111223322 246899999999999988764 223467899999999
Q ss_pred HHHHHhhCCCC---ChHHHHHHHHHHHhcCCCCCceeecCCCCCCCCCcccCCCCCCCC-----------CCCceeeeCC
Q psy18158 262 VARICQLYPNA---AASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVAD-----------RYHLMPIITP 327 (654)
Q Consensus 262 Va~icQl~Pn~---s~~~LL~~FF~~Ys~wdW~~pV~L~~~~~~~l~~~vWdp~~~~~d-----------r~~~MpIitP 327 (654)
+++.....++. +..+-+..+|++-++|.- ..| .|....+..+ +..+-.|+||
T Consensus 236 ~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~~-~~i-------------~w~~~y~~~~~~~~~fl~~~l~~~~p~I~DP 301 (349)
T 1px5_A 236 TVYAWEQGSRKTDFSTAQGFQTVLELVLKHQK-LCI-------------FWEAYYDFTNPVVGRCMLQQLKKPRPVILDP 301 (349)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHTGGG-CEE-------------CCCSSCCSSSHHHHHHHHHHHTSSSCEEBCT
T ss_pred HHHHHHhCCCccCCCHHHHHHHHHHHHHhCCc-cce-------------eeeccccccchhHHhhhhhhhcCCCCeeeCC
Confidence 99988765543 567778888888887631 123 3433222111 1123479999
Q ss_pred CCCCCCcCCccChhhHHHHHHH
Q psy18158 328 AYPQQNSTFNVSISTRTIMQEE 349 (654)
Q Consensus 328 ~~P~~Nsa~nVs~sTl~~I~~E 349 (654)
++|..|++.. +......+..|
T Consensus 302 ~dp~~NVa~~-~~~~~~~~~~~ 322 (349)
T 1px5_A 302 ADPTGNVGGG-DTHSWQRLAQE 322 (349)
T ss_dssp TCTTCBTTCS-CHHHHHHHHHH
T ss_pred CCCCCcccCC-chhhHHHHHHH
Confidence 9999999887 77777666633
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=97.82 E-value=0.002 Score=68.61 Aligned_cols=265 Identities=15% Similarity=0.140 Sum_probs=160.3
Q ss_pred CChHhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCC
Q psy18158 40 PNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHK 119 (654)
Q Consensus 40 Pt~~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p 119 (654)
|.+.|-..++.|.+ +...+.||+||..+=..++.++++++...+. +.|.-+- .=..|...|||.-|.++.
T Consensus 20 ~~~~d~~~~~~llk--r~~~l~Ps~eEq~~v~~lv~kI~~~ld~liv----~pg~~e~----~L~~V~rVGs~aKgtll~ 89 (364)
T 4at7_A 20 PAPDETSFSEALLK--RNQDLAPNSAEQASILSLVTKINNVIDNLIV----APGTFEV----QIEEVRQVGSYKKGTMTT 89 (364)
T ss_dssp CCCCCHHHHHHHHH--HHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH----CCTTCSS----CEEEEEEEHHHHHTCCCT
T ss_pred CCCChHHHHHHHHh--cCCccCCCHHHHHHHHHHHHHHHHHHHhhhc----CCCcccc----ccceeEEeccccCCceec
Confidence 55667777777766 3446899999998888888888888776542 2221110 014788999999999999
Q ss_pred C-CceeEEEecCCCCChh---hHHHHHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEeeccccCCCCcccccc
Q psy18158 120 G-ADIDALCVAPRHVDRA---DYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRD 195 (654)
Q Consensus 120 ~-SDID~l~v~p~~vsr~---~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~iP~~l~l~~ 195 (654)
| -|+|++|++..--|.+ ...+++.+-|+....-..+....+.+.=.|+ -.+-.+=+.+.. +|+++--.|
T Consensus 90 G~~~~dlVvl~k~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I~--~~~~~v~i~It~-----tsp~lrk~d 162 (364)
T 4at7_A 90 GHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEIS--SSDATVKILITT-----VPPNLRKLD 162 (364)
T ss_dssp TCCEEEEEEEESSCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEEE--CSSCEEEEEEEE-----CHHHHHTCC
T ss_pred CCCceeEEEEecCCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceEEEe--cCCCcEEEEEEe-----CChhhccCC
Confidence 7 6789999887655554 2345556666653221112211111111111 111112222211 122211111
Q ss_pred hhhhhchhh-hhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHHHHhhCC---C
Q psy18158 196 DMLLKNLDQ-KCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYP---N 271 (654)
Q Consensus 196 d~lL~~lD~-~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~icQl~P---n 271 (654)
... .+|. .|..+|-.+|-+.+......+ ...+.++|++|.-.++.. .++-|.+|++-+|+.+..-.-| .
T Consensus 163 p~~--~Ld~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~~----~w~pL~~waLELL~~~Ai~s~~~~~~ 235 (364)
T 4at7_A 163 PEL--HLDIKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNNPTRQP 235 (364)
T ss_dssp TTT--BCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCG----GGTTCCHHHHHHHHHHHHHSSTTSSC
T ss_pred hhH--hcCHHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhcC----CcCCCCHHHHHHHHHHHHhcCCCCCC
Confidence 111 1222 567778888988888777765 667889999999777653 2357888777777776665544 4
Q ss_pred CChHHHHHHHHHHHhc-CCCCCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCC-CCCcCCccChhhHHHHHHH
Q psy18158 272 AAASTLVCKFFLVFSQ-WKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYP-QQNSTFNVSISTRTIMQEE 349 (654)
Q Consensus 272 ~s~~~LL~~FF~~Ys~-wdW~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P-~~Nsa~nVs~sTl~~I~~E 349 (654)
.++++-+.++|+..+. +=-|... -|.||+.+ ..++....+.-.+..|..-
T Consensus 236 l~~~~afRRVLElLAsGillp~~~----------------------------Gi~DPCE~~~~~v~~~lt~qq~e~it~s 287 (364)
T 4at7_A 236 LALNVAYRRCLQILAAGLFLPGSV----------------------------GITDPCESGNFRVHTVMTLEQQDMVCYT 287 (364)
T ss_dssp CCHHHHHHHHHHHHHTTTTSTTBC----------------------------CCBCTTSSSCCBGGGGSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccCCCC----------------------------CCcCCCCCCCcchhccCCHHHHHHHHHH
Confidence 7899999999999874 3333211 13456666 4566666676667777776
Q ss_pred HHHHHHH
Q psy18158 350 FKQGKTI 356 (654)
Q Consensus 350 f~Ra~~i 356 (654)
-+.+.++
T Consensus 288 AQ~~LRl 294 (364)
T 4at7_A 288 AQTLVRI 294 (364)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777666
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.23 E-value=0.00079 Score=60.10 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=32.4
Q ss_pred cEEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHh
Q psy18158 104 GKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLK 147 (654)
Q Consensus 104 ~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~ 147 (654)
.+++.|||++-|-+.++||||++++.+...+..++ ..+...|.
T Consensus 28 ~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~~~~-~~l~~~l~ 70 (114)
T 1no5_A 28 YTVWAFGSRVKGKAKKYSDLDLAIISEEPLDFLAR-DRLKEAFS 70 (114)
T ss_dssp SEEEEEGGGTTTCCCTTCCEEEEEECSSCCCHHHH-HHHHHHHH
T ss_pred CEEEEEeccCCCCCCCCCCeEEEEEeCCCCCHHHH-HHHHHHHH
Confidence 58999999999999999999999998764443332 23444444
No 14
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=96.97 E-value=0.093 Score=56.40 Aligned_cols=264 Identities=14% Similarity=0.215 Sum_probs=154.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhCC---C-------ccccc------cc------CcEEEEeeee
Q psy18158 58 YNVSETDEELSSRMEVLSKLNNLVK---EWIKEVSIAKNI---P-------PTVAE------KV------GGKIYTFGSY 112 (654)
Q Consensus 58 ~~~~ps~eE~~~R~~Vl~~L~~ivk---~w~~~v~~~~~~---p-------~~~~~------~~------~~kl~~FGSy 112 (654)
..+||++||.+.=+.++..+++.+| +|+.+.....+- + ++..+ .. =.-|.-+|++
T Consensus 21 ~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~l 100 (383)
T 4at7_B 21 SSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLV 100 (383)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEecee
Confidence 3689999999999999999998887 566542221110 0 00000 00 0135668999
Q ss_pred eeCCCCCC-CceeEEEecCCCCChhhHHHHHHH----HHhcCC-Cccce-EecccCcccEEEEEEcCeeeeEEEeecccc
Q psy18158 113 RLGVHHKG-ADIDALCVAPRHVDRADYFSSFFE----KLKTVD-EVTDL-RAVEEAFVPVIKMNFDGIEIDMLFARLALK 185 (654)
Q Consensus 113 ~lGv~~p~-SDID~l~v~p~~vsr~~ff~~l~~----~L~~~~-~v~~l-~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~ 185 (654)
.-|+.+.| -+.|+|+++..--|. .+.+.+.+ -|+... +-.++ ..+.+|-+=|=.-....+.|=|.+.+..+.
T Consensus 101 aKGlLLkGd~~veLVvlck~kPT~-~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~~~v~I~lTSp~~r 179 (383)
T 4at7_B 101 AKGLLLKGDLDLELVLLCKEKPTT-ALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVR 179 (383)
T ss_dssp HHTCCCTTCCEEEEEEEESSCCBH-HHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSCCEEEEEEECHHHH
T ss_pred cccceECCCCceeEEEEeCCCCcH-HHHHHHHHHHHHHHhhccCCceEEeecCCcceEEEecCCCCCeEEEEEECCcccc
Confidence 99999875 789999988764444 44444444 444322 11122 233444222210001135566666554211
Q ss_pred ----CCC--Ccccccchhhhhchh-hhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHH
Q psy18158 186 ----EIP--DDMDLRDDMLLKNLD-QKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSW 258 (654)
Q Consensus 186 ----~iP--~~l~l~~d~lL~~lD-~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~ 258 (654)
... +++...|+. -.|| +.|+.+|-.+|-+.+.............++|++|.-.++..- ++-|.+|++
T Consensus 180 e~~~~~~~~~~~~~~dp~--d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~~----~~pL~~waL 253 (383)
T 4at7_B 180 EEMEKVLAGETLSVNDPP--DVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPT----WGPLRGWPL 253 (383)
T ss_dssp HHHHHHHTTCCCCCCCCT--TBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCGG----GGGGTTHHH
T ss_pred cchhhcccccccccCChh--hcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcCC----cCCCcHhHH
Confidence 010 111111110 1123 257778888888877766666666788999999997777532 246777787
Q ss_pred HHHHHHHHhh-CCCCChHHHHHHHHHHHhcCCCCCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCC--CCCCcC
Q psy18158 259 AMLVARICQL-YPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAY--PQQNST 335 (654)
Q Consensus 259 aiLVa~icQl-~Pn~s~~~LL~~FF~~Ys~wdW~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~--P~~Nsa 335 (654)
-+|+.+..-. ..+.++++-+.++|+..+.--.-. +.=-|.||++ |..|.+
T Consensus 254 ELL~~~ai~s~~~~l~~~~afRRVLEllasG~lLp---------------------------~~pgI~DPcEk~pt~~~~ 306 (383)
T 4at7_B 254 ELLCEKSIGTANRPMGAGEALRRVLECLASGIVMP---------------------------DGSGIYDPCEKEATDAIG 306 (383)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTTTST---------------------------TSCCCBCTTCSSCCBTTT
T ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCcccC---------------------------CCCCccCCCCCCCccccc
Confidence 7788776643 123679999999999987522210 0123567787 666665
Q ss_pred CccChhhHHHHHHHHHHHHHH
Q psy18158 336 FNVSISTRTIMQEEFKQGKTI 356 (654)
Q Consensus 336 ~nVs~sTl~~I~~Ef~Ra~~i 356 (654)
..+.-....|..+-+.+..+
T Consensus 307 -~lt~qq~e~it~sAQ~~LR~ 326 (383)
T 4at7_B 307 -HLDRQQREDITQSAQHALRL 326 (383)
T ss_dssp -TCCHHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHHH
Confidence 56667778898888888777
No 15
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.96 E-value=0.0016 Score=58.40 Aligned_cols=53 Identities=28% Similarity=0.392 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCceeEEEecCC
Q psy18158 67 LSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPR 131 (654)
Q Consensus 67 ~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p~ 131 (654)
.+.+.++++.|++++....++ +++ -..++.|||++-|-+.++||||++++...
T Consensus 9 ~~~~~~i~~~l~~~~~~l~~~------~~~------v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 9 IESQIRMLKLAKEIVEEVASS------FPN------LEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------CTT------EEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred ccCHHHHHHHHHHHHHHHHHH------cCC------ccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 345677777777777654432 221 15799999999999999999999998764
No 16
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=96.85 E-value=0.0012 Score=57.55 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=26.5
Q ss_pred cEEEEeeeeeeCCCCCCCceeEEEecCCCCC
Q psy18158 104 GKIYTFGSYRLGVHHKGADIDALCVAPRHVD 134 (654)
Q Consensus 104 ~kl~~FGSy~lGv~~p~SDID~l~v~p~~vs 134 (654)
..++.|||++-|-+.++||||++++.+...+
T Consensus 26 ~~v~LFGS~arG~~~~~SDiDl~V~~~~~~~ 56 (98)
T 1wot_A 26 VRVRVFGSVARGEAREDSDLDLLVAFEEGRT 56 (98)
T ss_dssp SSCEECSHHHHTCCCTTCCCEEEECCCSSCC
T ss_pred cEEEEEccccCCCCCCCCCEEEEEEeCCCCC
Confidence 4689999999999999999999998765344
No 17
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=96.68 E-value=0.0025 Score=55.22 Aligned_cols=28 Identities=36% Similarity=0.478 Sum_probs=25.9
Q ss_pred cEEEEeeeeeeCCCCCC-CceeEEEecCC
Q psy18158 104 GKIYTFGSYRLGVHHKG-ADIDALCVAPR 131 (654)
Q Consensus 104 ~kl~~FGSy~lGv~~p~-SDID~l~v~p~ 131 (654)
.+++.|||+.-|-+.++ ||||++++.+.
T Consensus 18 ~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 18 AEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred cEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 68999999999999999 99999998764
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=94.42 E-value=0.035 Score=56.78 Aligned_cols=54 Identities=20% Similarity=0.096 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCceeEEEecCC
Q psy18158 66 ELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPR 131 (654)
Q Consensus 66 E~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p~ 131 (654)
|.-.|+.+.+.|+++++...+ . +++ -.+|+.||||.-|-+.++||||++++...
T Consensus 15 ~~~~~q~Vq~eL~~ive~L~~----~--~~~------i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 15 ENLYFQGVQHTIARWVDRLRE----E--YAD------AVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH----H--CTT------EEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred hccChHHHHHHHHHHHHHHHH----h--cCC------ceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 334556666666665544322 1 221 15799999999999999999999999754
No 19
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=94.19 E-value=0.21 Score=52.68 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=77.1
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCCCCChh----hHHHHHHHHHhcCCCccceEecccCcccEE-EEEE-------
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRA----DYFSSFFEKLKTVDEVTDLRAVEEAFVPVI-KMNF------- 170 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~----~ff~~l~~~L~~~~~v~~l~~I~~A~VPII-Kf~~------- 170 (654)
+.++..-||||=|-.+ .+|||+++..|..-+.+ .++..+.+.|.+.+.|+.+......+.-++ ++..
T Consensus 172 ~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~~ 250 (335)
T 2fmp_A 172 EYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 250 (335)
T ss_dssp TCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCCC
T ss_pred CcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccCC
Confidence 4789999999999865 67999999888532222 577888889999888887766666654443 3322
Q ss_pred cCeeeeEEEeeccccCCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcC
Q psy18158 171 DGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVL 250 (654)
Q Consensus 171 ~GI~iDLsfa~l~~~~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~ 250 (654)
.|+.|||.++... + ..-.++-+-.+ +.| .|.++.||+++|+.=|-+
T Consensus 251 ~~~rVDl~~vp~~-------------~-----------------~~~aLl~fTGS-~~f---nr~lR~~A~~kG~kl~e~ 296 (335)
T 2fmp_A 251 PHRRIDIRLIPKD-------------Q-----------------YYCGVLYFTGS-DIF---NKNMRAHALEKGFTINEY 296 (335)
T ss_dssp CCEEEEEEECCGG-------------G-----------------HHHHHHHHHCC-HHH---HHHHHHHHHHTTEEECSS
T ss_pred CceEEEEEEECHH-------------H-----------------HHHHHHHhhCC-HHH---HHHHHHHHHHcCCccccc
Confidence 2899999987531 0 11122222222 223 367788999998877777
Q ss_pred Cc
Q psy18158 251 GY 252 (654)
Q Consensus 251 G~ 252 (654)
|.
T Consensus 297 Gl 298 (335)
T 2fmp_A 297 TI 298 (335)
T ss_dssp CE
T ss_pred cc
Confidence 75
No 20
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=93.70 E-value=0.37 Score=50.91 Aligned_cols=115 Identities=19% Similarity=0.227 Sum_probs=75.4
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecc-----cCcc-cEEEEEE---cCe
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVE-----EAFV-PVIKMNF---DGI 173 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~-----~A~V-PIIKf~~---~GI 173 (654)
+.++..-||||=|-.+ .+|||+++..|..-+...++..+.+.|.+.+.++.+.... ..+. =|.++.. .|+
T Consensus 169 ~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~~~ 247 (335)
T 2bcq_A 169 GLLCVACGSYRRGKAT-CGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHR 247 (335)
T ss_dssp TCEEEECHHHHTTCSE-ESSEEEEEECTTSSTTTTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCCCE
T ss_pred CcEEEEccccccCCCC-CCCeEEEEecCCchhhhhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCCCce
Confidence 4789999999999866 5699999998875555577888888999888887654331 1222 1112221 589
Q ss_pred eeeEEEeeccccCCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCc
Q psy18158 174 EIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGY 252 (654)
Q Consensus 174 ~iDLsfa~l~~~~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~ 252 (654)
.|||.++... + ..-.++-+-.+ + .-.|.++.||+++|+.=|-+|.
T Consensus 248 rVDl~~vp~~-------------~-----------------~g~ALl~fTGS-~---~fnr~lR~~A~~~G~kL~e~Gl 292 (335)
T 2bcq_A 248 RLDIIVVPYS-------------E-----------------FACALLYFTGS-A---HFNRSMRALAKTKGMSLSEHAL 292 (335)
T ss_dssp EEEEEECCGG-------------G-----------------HHHHHHHHHCC-H---HHHHHHHHHHHHTTCEECSSCE
T ss_pred EEEEEEECHH-------------H-----------------HHHHHHHhhCC-H---HHHHHHHHHHHHcCCCcccccc
Confidence 9999987531 0 11112222222 2 2336788999999987777775
No 21
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=93.50 E-value=0.073 Score=53.67 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=25.5
Q ss_pred cEEEEeeeeeeCCCCCCCceeEEEecCC
Q psy18158 104 GKIYTFGSYRLGVHHKGADIDALCVAPR 131 (654)
Q Consensus 104 ~kl~~FGSy~lGv~~p~SDID~l~v~p~ 131 (654)
..|+.|||+.-|-..++||||++++...
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 5799999999999999999999998764
No 22
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=91.87 E-value=0.28 Score=47.38 Aligned_cols=113 Identities=17% Similarity=0.249 Sum_probs=73.1
Q ss_pred ccccccCcEEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhc--CCCcc-ceEecccCcccEEEEEE--c
Q psy18158 97 TVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKT--VDEVT-DLRAVEEAFVPVIKMNF--D 171 (654)
Q Consensus 97 ~~~~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~--~~~v~-~l~~I~~A~VPIIKf~~--~ 171 (654)
+.++..|.++..-||||=|-.+- +|||+++..|. . ..+.+.|.+ .+.++ ++..-.+.++-+ ++.. .
T Consensus 25 ~~ik~~g~~v~iaGS~RRgket~-gDiDiLit~~~---~----~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~~~ 95 (174)
T 1jaj_A 25 QLIKILSKNIVAVGSLRREEKML-NDVDLLIIVPE---K----KLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWEKK 95 (174)
T ss_dssp EEEEECTTTEEEEEHHHHTCSEE-CCEEEEEEESS---H----HHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESSSC
T ss_pred ccccCCCcEEEEeccccCCCCCC-CCEEEEEecCC---H----HHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCCCC
Confidence 34445578899999999998665 59999998774 2 345666777 77777 665444555333 4433 6
Q ss_pred CeeeeEEEeeccccCCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCC
Q psy18158 172 GIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLG 251 (654)
Q Consensus 172 GI~iDLsfa~l~~~~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G 251 (654)
|+.|||.++... . ..-.++-+-.+ +.| .+.++.||+++|+.=|.+|
T Consensus 96 ~~rVDl~~vp~~------~------------------------fg~ALl~fTGS-k~h---n~~lR~~A~~kG~~L~e~G 141 (174)
T 1jaj_A 96 TYQLDLFTALAE------E------------------------KPYAIFHFTGP-VSY---LIRIRAALKKKNYKLNQYG 141 (174)
T ss_dssp CEEEEEEEEETT------C------------------------HHHHHHHHHSC-HHH---HHHHHHHHHHTTEEEETTE
T ss_pred ceEEEEEEeCHH------H------------------------HHHHHHHhHCC-HHH---HHHHHHHHHHcCCCcCccc
Confidence 899999998631 1 01112222222 223 3667789999998777677
Q ss_pred c
Q psy18158 252 Y 252 (654)
Q Consensus 252 ~ 252 (654)
.
T Consensus 142 l 142 (174)
T 1jaj_A 142 L 142 (174)
T ss_dssp E
T ss_pred c
Confidence 4
No 23
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=91.12 E-value=1.1 Score=47.79 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=40.6
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCcc
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVT 153 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~ 153 (654)
+.++..-||||=|--+ .+|||+++..|..-....++..+.+.|.+.+.|+
T Consensus 176 ~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 176 GATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQEVGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp TCEEEECHHHHTTCSE-ESEEEEEEECSSTTTTTTHHHHHHHHHHHTTCEE
T ss_pred CcEEEEccccccCCCc-cCCeEEEEecCChhhhhhHHHHHHHHHHhCCCee
Confidence 4789999999999866 5699999998875444568888888898887776
No 24
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=87.86 E-value=0.82 Score=47.38 Aligned_cols=99 Identities=13% Similarity=0.219 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCCCceeEEEecCC----CCC
Q psy18158 59 NVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPR----HVD 134 (654)
Q Consensus 59 ~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~SDID~l~v~p~----~vs 134 (654)
|+.|.---.+..+++++.|.+.+++ .+.+ --|..+||+..|-...-||||++++... ...
T Consensus 13 ~~~~~~~~m~~~~e~l~~I~~~~~~-----------d~~i-----~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~~~f~ 76 (287)
T 3jz0_A 13 GLVPRGSHMLKQKELIANVKNLTES-----------DERI-----TACMMYGSFTKGEGDQYSDIEFYIFLKHSITSNFD 76 (287)
T ss_dssp ---------CHHHHHHHHHHHHHHH-----------CTTE-----EEEEECSGGGTTCCCTTCCEEEEEEECGGGTTTCC
T ss_pred CcCCCCCCccCHHHHHHHHHHHHhc-----------CCCE-----EEEEEECCccCCCCCCccceeEEEEEcCcchhhhh
Confidence 4455555556666777776666543 1111 3588999999999889999999997643 112
Q ss_pred hhhHHHHHHHHHhcCCCccceEecccCcccEEEEEE-cCeeeeEEEeecc
Q psy18158 135 RADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNF-DGIEIDMLFARLA 183 (654)
Q Consensus 135 r~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~-~GI~iDLsfa~l~ 183 (654)
...+...|-.++.. .+..++- ..+.| +|+.|||.|..+.
T Consensus 77 ~~~Wl~~fG~~~~~---------f~~~~~~-~l~lF~Dg~riDl~l~~~~ 116 (287)
T 3jz0_A 77 SSNWLFDVAPYLML---------YKNEYGT-EVVIFDNLIRGEFHFLSEK 116 (287)
T ss_dssp HHHHHHHHCCEEEE---------EECTTSC-EEEEETTSCEEEEEEEEGG
T ss_pred hHHHHHHhhhhheE---------eecccce-EEEEecCCcEEEEEEeeHH
Confidence 22333333222211 1122222 23444 7999999999874
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=86.73 E-value=2.4 Score=45.46 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=37.9
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCCCCChhh--HHHHHHHHHhcCCCcc
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRAD--YFSSFFEKLKTVDEVT 153 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~--ff~~l~~~L~~~~~v~ 153 (654)
+.++..-||||=|--+ .+|||+|+..|..-.... ++..+.+.|.+.+.|+
T Consensus 196 ~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~ 247 (381)
T 1jms_A 196 DALVTMTGGFRRGKMT-GHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLL 247 (381)
T ss_dssp TCEEEECHHHHTTCSC-BSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CcEEEEccccccCCCC-cCCeEEEEeCCCccccchhhHHHHHHHHHHhCCCcc
Confidence 4789999999999866 569999998876432222 6777888888877763
No 26
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=86.48 E-value=4.7 Score=45.17 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=70.3
Q ss_pred CcEEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEeec
Q psy18158 103 GGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARL 182 (654)
Q Consensus 103 ~~kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l 182 (654)
..++..-||||=|-.+- +|||+++..|. . ..+.+.|.+.+.|.++......++-+ ++ -.|+.|||.++..
T Consensus 180 ~~~~~~~Gs~RRgke~~-gDiD~li~~~~---~----~~v~~~l~~~~~~~~~~~~g~~k~~~-~~-~~~~rvDl~~~~~ 249 (575)
T 3b0x_A 180 VERAELCGSARRYKDTV-GDLDFLVASRE---G----ERAVEGFVRLPQVKEVYAKGKERATV-FL-KNGLQVDLRVVPP 249 (575)
T ss_dssp CCEEEECHHHHTTCSEE-SSEEEEEECSS---H----HHHHHHHHTSTTEEEEEEECSSEEEE-EE-TTSCEEEEEEECG
T ss_pred CcEEEEccccccCCCcc-CCeEEEEeCCC---H----HHHHHHHHhCcchhhHhhcCCCceEE-Ec-cCCcEEEEEEECH
Confidence 47899999999998664 59999998774 2 24556777778887665444444333 11 2699999998863
Q ss_pred cccCCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCcc
Q psy18158 183 ALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYL 253 (654)
Q Consensus 183 ~~~~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~L 253 (654)
. + ..-.++-+-.+ + .-.|.++.||+++|+.=|.+|..
T Consensus 250 ~-------------~-----------------~~~al~~~TGs-~---~~n~~lR~~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 250 E-------------S-----------------YGAGLQYLTGS-A---AHSIRLRALAQEKGLKLSEYGVF 286 (575)
T ss_dssp G-------------G-----------------HHHHHHHHHCC-H---HHHHHHHHHHHHTTCEEETTEEE
T ss_pred H-------------H-----------------HHHHHHHhhCC-H---HHHHHHHHHHHHcCCCcchhhcc
Confidence 1 0 11122222222 2 23367889999999888888854
No 27
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=78.69 E-value=3.8 Score=44.68 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=36.8
Q ss_pred cCcEEEEeeeeeeCCCCCCCceeEEEecCCC---------CChhhHHHHHHHHHhc
Q psy18158 102 VGGKIYTFGSYRLGVHHKGADIDALCVAPRH---------VDRADYFSSFFEKLKT 148 (654)
Q Consensus 102 ~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~---------vsr~~ff~~l~~~L~~ 148 (654)
.+.-|+.+|||+-|=-.++||||++++.+.. ++...||..|.+.+.+
T Consensus 153 ~~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l~~ 208 (440)
T 1v4a_A 153 QPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 208 (440)
T ss_dssp CCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 4678999999999999999999999986632 3344788877766654
No 28
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=61.59 E-value=14 Score=41.02 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=36.6
Q ss_pred cCcEEEEeeeeeeCCCCCCCceeEEEecCCC----------CChhhHHHHHHHHHhc
Q psy18158 102 VGGKIYTFGSYRLGVHHKGADIDALCVAPRH----------VDRADYFSSFFEKLKT 148 (654)
Q Consensus 102 ~~~kl~~FGSy~lGv~~p~SDID~l~v~p~~----------vsr~~ff~~l~~~L~~ 148 (654)
.+.-|..+|+++-+=-..+||||++++.+.. ++...||..+.+.+.+
T Consensus 233 ~~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 233 RGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp CSEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred CCEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 4678999999999999999999999987642 2234788877766554
No 29
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=55.82 E-value=33 Score=32.45 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=42.4
Q ss_pred CcEEEEeeeeee---CCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcc--cEEEEEEcCeeeeE
Q psy18158 103 GGKIYTFGSYRL---GVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFV--PVIKMNFDGIEIDM 177 (654)
Q Consensus 103 ~~kl~~FGSy~l---Gv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~V--PIIKf~~~GI~iDL 177 (654)
+..-...|||.+ |+-.+.-|||+++- .+ =...+.++|.+. +......-++... -...+.+.|++|||
T Consensus 33 ~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~------~~-da~~~~~~L~~~-g~~~~~~~~~~~~~~~f~~~~i~~v~VDl 104 (169)
T 2fcl_A 33 XVNWVVTGSLSFALQGVPVEVHDIDIQTD------EE-GAYEIERIFSEF-VSXXVRFSSTEXICSHFGELIIDGIXVEI 104 (169)
T ss_dssp SCCEEEEHHHHHHHTTCCCCCCSEEEEEC------HH-HHHHHHHHTGGG-EEEEEEEEECSSEEEEEEEEEETTEEEEE
T ss_pred CCCEEEeHHHHHHHcCCCCCCCccEEEec------cc-CHHHHHHHHHHH-hhcccCCCccccccceeeEEeeCCEEEEe
Confidence 566778899976 77778899999772 12 234566677652 1111111122221 14456678999999
Q ss_pred EEe
Q psy18158 178 LFA 180 (654)
Q Consensus 178 sfa 180 (654)
...
T Consensus 105 m~~ 107 (169)
T 2fcl_A 105 MGD 107 (169)
T ss_dssp EEE
T ss_pred eec
Confidence 965
No 30
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=51.65 E-value=12 Score=38.43 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=34.2
Q ss_pred EEEEeeeeeeCC--CCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecc--------cCcccEEEEEE-cCe
Q psy18158 105 KIYTFGSYRLGV--HHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVE--------EAFVPVIKMNF-DGI 173 (654)
Q Consensus 105 kl~~FGSy~lGv--~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~--------~A~VPIIKf~~-~GI 173 (654)
-|+.-||...+- .-.-||+|+++++.. .+.|... ...|.+-..+-.++.-. .-.-|..-+.+ +|+
T Consensus 25 Av~l~GSr~n~~~~~D~fSDyDi~~vv~d---~~~~~~~-~~wl~~fg~~l~~~~~e~~~~~~~~~~~~~~~l~lf~dg~ 100 (294)
T 2pbe_A 25 LVTLEGSRTNRNIPPDNFQDYDISYFVTD---VESFKEN-DQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFEDGN 100 (294)
T ss_dssp EEEEC------------CCCEEEEEEESC---HHHHHTC-SGGGGGGCCEEEEECTTSCSSSCCCSTTCEEEEEEETTSC
T ss_pred EEEEecCCCCCCCCCCCcccceEEEEEcC---chHhhhh-HHHHHHHhhHHhhccccccccCcccCCCceeEEEEecCCc
Confidence 477889998855 777899999999764 2333321 11222211221111100 11113333444 699
Q ss_pred eeeEEEeecc
Q psy18158 174 EIDMLFARLA 183 (654)
Q Consensus 174 ~iDLsfa~l~ 183 (654)
.|||.|..+.
T Consensus 101 rIDl~~~~~~ 110 (294)
T 2pbe_A 101 KLDLTLIPIR 110 (294)
T ss_dssp EEEEEEEEGG
T ss_pred EEEEEEecHH
Confidence 9999999874
No 31
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=48.44 E-value=25 Score=39.43 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=58.1
Q ss_pred EEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEeecccc
Q psy18158 106 IYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALK 185 (654)
Q Consensus 106 l~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~ 185 (654)
+..-||||=|-.+- +|||+++.. . .+.. |.+.+.|+ .-.+.++-+ ++ .|+.|||.++...
T Consensus 182 ~~~~Gs~RR~~e~~-gDiD~li~~-~---~~~v-------l~~~~~v~---~~g~~k~~~-~~--~~~~vDl~~~~~~-- 241 (578)
T 2w9m_A 182 PAPAGDVRRGLETV-RAAELTVTG-T---PDDV-------LARLPELT---VQGDGVLSG-DY--EGVPVEIACAPAE-- 241 (578)
T ss_dssp CEECHHHHHTCSEE-SSEEEEEES-C---HHHH-------HHHCTTCE---EC---CEEE-EE--TTEEEEEEEECTT--
T ss_pred CEEecccccCCCcc-CCEEEEEec-C---hHHH-------HhcCccce---ecCCceEEE-EE--CCEEEEEEEECHH--
Confidence 78899999998665 599998886 2 2221 55566665 222333322 33 8999999988631
Q ss_pred CCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHH-HHHHHHHHHcCCCcCcCCcc
Q psy18158 186 EIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLAL-RTIKLWAKKHGIYSNVLGYL 253 (654)
Q Consensus 186 ~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~ll-r~IK~WAK~RgIysn~~G~L 253 (654)
. ..-.++-+-. .-. |.++.||++||+.=|-+|..
T Consensus 242 ----~------------------------~~~al~~~TG------~~n~~~lr~~A~~~g~~l~~~gl~ 276 (578)
T 2w9m_A 242 ----A------------------------RGALDLLRSG------EHFAGQVQAAAQARGFTLTAGGLS 276 (578)
T ss_dssp ----T------------------------HHHHHHHTSC------HHHHHHHHHHHHTTTCEEETTEEE
T ss_pred ----H------------------------HHHHHHHHhh------hhHHHHHHHHHHHcCCCcChhhcc
Confidence 0 0111222222 223 77889999999887878854
No 32
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase, translocation, single tranded RNA polymerase, RNA protein complex, processivity, heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} SCOP: e.69.1.1 PDB: 3er8_C* 3erc_C* 3owg_A 2ga9_D* 2gaf_D
Probab=25.21 E-value=32 Score=37.23 Aligned_cols=62 Identities=26% Similarity=0.467 Sum_probs=34.8
Q ss_pred HHhccCCCC-CCHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhCCCcccccccCcEEEEeeeeeeCCCCCC---CceeE
Q psy18158 53 ECLKPYNVS-ETDEELSSRMEV---LSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKG---ADIDA 125 (654)
Q Consensus 53 ~~L~~~~~~-ps~eE~~~R~~V---l~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~~FGSy~lGv~~p~---SDID~ 125 (654)
+.|+.+++. |++.+...|..| +..+.+++++.+++ + +-.+..||||.+-+-.|. +|||+
T Consensus 140 ~iL~synv~~~~~~~vmgRh~VSdLV~~V~klmeEyLrr----h----------Nk~CicYGSySlhlLNp~I~YgDIDi 205 (479)
T 3er9_B 140 DMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRR----H----------NKSCICYGSYSLYLINPNIRYGDIDI 205 (479)
T ss_dssp HHHHHHCCCC-----------CCTTHHHHHHHHHHHHHH----C----------TTTEEEESHHHHHTTCTTCCCCSCEE
T ss_pred HHHHhcccccCCcccccccccccHHHHHHHHHHHHHHHh----c----------CCCeEEeeceeeeecCCCcccCCcce
Confidence 455666654 454467777765 66666777776654 2 235789999988776665 99998
Q ss_pred EEe
Q psy18158 126 LCV 128 (654)
Q Consensus 126 l~v 128 (654)
+=.
T Consensus 206 lqT 208 (479)
T 3er9_B 206 LQT 208 (479)
T ss_dssp EES
T ss_pred eee
Confidence 543
Done!